Running as unit: rb-build-arm64_4-37288.service ==================================================================================== Fri Sep 27 06:03:14 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_4) on jenkins, called using "codethink02-arm64 codethink01-arm64" as arguments. Fri Sep 27 06:03:14 UTC 2024 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-wVoXTMch" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Sep 27 06:03:14 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink02-arm64.debian.net is marked as down. Fri Sep 27 06:03:14 UTC 2024 - checking via ssh if codethink02-arm64.debian.net is up. removed '/tmp/read-only-fs-test-RwJQkt' Fri Sep 27 06:03:15 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink01-arm64.debian.net is marked as down. Fri Sep 27 06:03:15 UTC 2024 - checking via ssh if codethink01-arm64.debian.net is up. removed '/tmp/read-only-fs-test-ncYHCR' ok, let's check if diamond-aligner is building anywhere yet… ok, diamond-aligner is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of diamond-aligner in unstable on arm64 on jenkins now. 1st build will be done on codethink02-arm64.debian.net. 2nd build will be done on codethink01-arm64.debian.net. ============================================================================= Fri Sep 27 06:03:29 UTC 2024 I: starting to build diamond-aligner/unstable/arm64 on jenkins on '2024-09-27 06:03' Fri Sep 27 06:03:29 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_4/37288/console.log 1727417009 arm64 unstable diamond-aligner Fri Sep 27 06:03:29 UTC 2024 I: Downloading source for unstable/diamond-aligner=2.1.9-1 --2024-09-27 06:03:30-- http://deb.debian.org/debian/pool/main/d/diamond-aligner/diamond-aligner_2.1.9-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2199 (2.1K) [text/prs.lines.tag] Saving to: ‘diamond-aligner_2.1.9-1.dsc’ 0K .. 100% 222M=0s 2024-09-27 06:03:30 (222 MB/s) - ‘diamond-aligner_2.1.9-1.dsc’ saved [2199/2199] --2024-09-27 06:03:30-- http://deb.debian.org/debian/pool/main/d/diamond-aligner/diamond-aligner_2.1.9-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2199 (2.1K) [text/prs.lines.tag] Saving to: ‘diamond-aligner_2.1.9-1.dsc’ 0K .. 100% 222M=0s 2024-09-27 06:03:30 (222 MB/s) - ‘diamond-aligner_2.1.9-1.dsc’ saved [2199/2199] Fri Sep 27 06:03:30 UTC 2024 I: diamond-aligner_2.1.9-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: diamond-aligner Binary: diamond-aligner Architecture: any-amd64 arm64 ppc64el s390x ia64 ppc64 riscv64 sparc64 loong64 Version: 2.1.9-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/bbuchfink/diamond Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/diamond-aligner Vcs-Git: https://salsa.debian.org/med-team/diamond-aligner.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, zlib1g-dev, debhelper Package-List: diamond-aligner deb science optional arch=any-amd64,arm64,ppc64el,s390x,ia64,ppc64,riscv64,sparc64,loong64 Checksums-Sha1: d574fc84b6a23287a8a6d6f644242462c6e63c91 4309956 diamond-aligner_2.1.9.orig.tar.xz 4afaa4d3277991b69cb5291deb0c22f16fdb0926 129068 diamond-aligner_2.1.9-1.debian.tar.xz Checksums-Sha256: 34d4324db7df9a898967bd1d22a16568cbf4c30237391932d2441a9dd9802a0d 4309956 diamond-aligner_2.1.9.orig.tar.xz 69714e16affb57dc840dc96bbdd63c803d74e4a13c07200d2687788e76cd1e2a 129068 diamond-aligner_2.1.9-1.debian.tar.xz Files: 77732a2d56b9b4e195015e11b0e01ff9 4309956 diamond-aligner_2.1.9.orig.tar.xz 0f1d0f1c7f08a307f67b0d7ad8843c49 129068 diamond-aligner_2.1.9-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmXDWmoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEeqQ//dYTxUYea088bJ+siCl10ccruzJ+DGbdP YVAbedqdJj9jo/gQyo8m2MR5CCISdkjdnRitz17HY+mVy+FeKb1Jk62KaHz3/UKY OOP6GFBbfyfcMzTj66XqZFvLFFBagb06HQ1JaHkzz5Vhp+32HCPuaCN+S6/14zt1 oB3RwU5MSAmtCDcq79DgqjNANajtEPGJETSw1qNitG6Rm05Ubu4KPJFuinlViVQE oJ/obq67XSIOG99KjGjSEw045GqkDyFmIxm+PEUyFj5W9Io7PEd6x1RSbtSdbuzq 12CHR8CCiDVudC+lpSsOkpBlXHxLgmD52eVi3l0oz/NtWxWG4jnxpxu1h+lKVR8g wfwoUbOR2RuUvtyV9Yhr4RUNNXOeDNnl1GphPYSlmhUMq5fsbbZ8m2YQQdntEtj2 WhVUdANoFhYEX1pfwLlTHjPntawTOEfwhvgFt73sp3IC5FppPGlzQDFXrlwNvd0T rO7MwqeOJEpw6Gq5fFuPqariRoi0sb9AFhp33sQNiOCpQwDc/1x4CoN1m/ZBXVAN V4O82qJ6d+xObNVZ2hXqZEsLSg8CBC9OlN/nxWJusz6PHAhFsjL6soZHt8esj8fJ dSR0EoiihSLyveg37EXMqeQia2FFs+43L4ghRBEX6B6FZ9vCoyGzBKBEgmfEWVuH BZApf+nbAhw= =6cpe -----END PGP SIGNATURE----- Fri Sep 27 06:03:30 UTC 2024 I: Checking whether the package is not for us Fri Sep 27 06:03:30 UTC 2024 I: Starting 1st build on remote node codethink02-arm64.debian.net. Fri Sep 27 06:03:30 UTC 2024 I: Preparing to do remote build '1' on codethink02-arm64.debian.net. Fri Sep 27 06:03:30 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink02-arm64.debian.net is marked as down. Fri Sep 27 06:03:30 UTC 2024 - checking via ssh if codethink02-arm64.debian.net is up. removed '/tmp/read-only-fs-test-I1UQCR' ==================================================================================== Fri Sep 27 06:03:31 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink02-arm64, called using "1 diamond-aligner unstable /srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq 2.1.9-1" as arguments. Fri Sep 27 06:03:31 UTC 2024 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-GjS4iTix" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Sep 27 06:03:32 UTC 2024 I: Downloading source for unstable/diamond-aligner=2.1.9-1 Reading package lists... NOTICE: 'diamond-aligner' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/diamond-aligner.git Please use: git clone https://salsa.debian.org/med-team/diamond-aligner.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 4441 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main diamond-aligner 2.1.9-1 (dsc) [2199 B] Get:2 http://deb.debian.org/debian unstable/main diamond-aligner 2.1.9-1 (tar) [4310 kB] Get:3 http://deb.debian.org/debian unstable/main diamond-aligner 2.1.9-1 (diff) [129 kB] Fetched 4441 kB in 0s (35.9 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'diamond-aligner' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/diamond-aligner.git Please use: git clone https://salsa.debian.org/med-team/diamond-aligner.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 4441 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main diamond-aligner 2.1.9-1 (dsc) [2199 B] Get:2 http://deb.debian.org/debian unstable/main diamond-aligner 2.1.9-1 (tar) [4310 kB] Get:3 http://deb.debian.org/debian unstable/main diamond-aligner 2.1.9-1 (diff) [129 kB] Fetched 4441 kB in 0s (35.9 MB/s) Download complete and in download only mode ============================================================================= Building diamond-aligner in unstable on arm64 on codethink02-arm64 now. Date: Fri Sep 27 07:03:32 BST 2024 Date UTC: Fri Sep 27 06:03:32 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Sep 26 18:03:32 -12 2024 I: pbuilder-time-stamp: 1727417012 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [diamond-aligner_2.1.9-1.dsc] I: copying [./diamond-aligner_2.1.9.orig.tar.xz] I: copying [./diamond-aligner_2.1.9-1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Feb 7 10:24:42 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./diamond-aligner_2.1.9-1.dsc: no acceptable signature found dpkg-source: info: extracting diamond-aligner in diamond-aligner-2.1.9 dpkg-source: info: unpacking diamond-aligner_2.1.9.orig.tar.xz dpkg-source: info: unpacking diamond-aligner_2.1.9-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/870888/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='699c8dfba7d74e83ba4f59bbebbe5707' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='870888' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq/pbuilderrc_w79p --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq/b1 --logfile b1/build.log diamond-aligner_2.1.9-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/870888/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, zlib1g-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19897 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 54 newly installed, 0 to remove and 0 not upgraded. Need to get 35.5 MB of archives. After unpacking 137 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-5 [61.3 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-5 [868 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-8 [96.6 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.1 [630 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-1 [323 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b4 [292 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.1-1 [22.8 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-3 [9112 B] Get: 26 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3 [174 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.63.0-1 [71.2 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.0-7 [208 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.10.1-1 [322 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.3-1 [90.2 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libjsoncpp25 arm64 1.9.5-6+b2 [73.2 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 librhash0 arm64 1.4.3-3+b1 [127 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.48.0-6 [142 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 cmake-data all 3.30.3-1 [2221 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 cmake arm64 3.30.3-1 [9398 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 48 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.191-2 [188 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB] Fetched 35.5 MB in 1s (67.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19897 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-5_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-5) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-5_arm64.deb ... Unpacking procps (2:4.0.4-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/diamond-aligner-2.1.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../diamond-aligner_2.1.9-1_source.changes dpkg-buildpackage: info: source package diamond-aligner dpkg-buildpackage: info: source version 2.1.9-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9' dh_auto_configure -- -DX86=OFF -DCMAKE_BUILD_TYPE=Release cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DX86=OFF -DCMAKE_BUILD_TYPE=Release .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. 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-mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_NEON -DARCH_ID=4 -D__ARM_NEON -D__aarch64__ -DEigen=Eigen_NEON -MD -MT CMakeFiles/arch_neon.dir/src/search/stage1_2.cpp.o -MF CMakeFiles/arch_neon.dir/src/search/stage1_2.cpp.o.d -o CMakeFiles/arch_neon.dir/src/search/stage1_2.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/search/stage1_2.cpp [ 2%] Building CXX object CMakeFiles/arch_neon.dir/src/tools/benchmark.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/swipe/banded_3frame_swipe.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/swipe/banded_3frame_swipe.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/swipe/banded_3frame_swipe.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/banded_3frame_swipe.cpp [ 2%] Building CXX object CMakeFiles/arch_generic.dir/src/tools/benchmark.cpp.o [ 3%] Building CXX object CMakeFiles/arch_generic.dir/src/search/stage1_2.cpp.o [ 3%] Building CXX object CMakeFiles/arch_neon.dir/src/dp/swipe/swipe_wrapper.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND 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-ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/tools/benchmark.cpp.o -MF CMakeFiles/arch_generic.dir/src/tools/benchmark.cpp.o.d -o CMakeFiles/arch_generic.dir/src/tools/benchmark.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/tools/benchmark.cpp /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_NEON -DARCH_ID=4 -D__ARM_NEON -D__aarch64__ -DEigen=Eigen_NEON -MD -MT CMakeFiles/arch_neon.dir/src/dp/swipe/swipe_wrapper.cpp.o -MF CMakeFiles/arch_neon.dir/src/dp/swipe/swipe_wrapper.cpp.o.d -o CMakeFiles/arch_neon.dir/src/dp/swipe/swipe_wrapper.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp [ 4%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/swipe/swipe_wrapper.cpp.o [ 3%] Building CXX object CMakeFiles/arch_generic.dir/src/masking/tantan.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/masking/tantan.cpp.o -MF CMakeFiles/arch_generic.dir/src/masking/tantan.cpp.o.d -o CMakeFiles/arch_generic.dir/src/masking/tantan.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/masking/tantan.cpp /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/swipe/swipe_wrapper.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/swipe/swipe_wrapper.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/swipe/swipe_wrapper.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp [ 5%] Building CXX object CMakeFiles/arch_neon.dir/src/masking/tantan.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_NEON -DARCH_ID=4 -D__ARM_NEON -D__aarch64__ -DEigen=Eigen_NEON -MD -MT CMakeFiles/arch_neon.dir/src/masking/tantan.cpp.o -MF CMakeFiles/arch_neon.dir/src/masking/tantan.cpp.o.d -o CMakeFiles/arch_neon.dir/src/masking/tantan.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/masking/tantan.cpp [ 6%] Building CXX object CMakeFiles/arch_neon.dir/src/dp/ungapped_simd.cpp.o [ 6%] Building CXX object CMakeFiles/arch_neon.dir/src/dp/scan_diags.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_NEON -DARCH_ID=4 -D__ARM_NEON -D__aarch64__ -DEigen=Eigen_NEON -MD -MT CMakeFiles/arch_neon.dir/src/dp/ungapped_simd.cpp.o -MF CMakeFiles/arch_neon.dir/src/dp/ungapped_simd.cpp.o.d -o CMakeFiles/arch_neon.dir/src/dp/ungapped_simd.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/ungapped_simd.cpp /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_NEON -DARCH_ID=4 -D__ARM_NEON -D__aarch64__ -DEigen=Eigen_NEON -MD -MT CMakeFiles/arch_neon.dir/src/dp/scan_diags.cpp.o -MF CMakeFiles/arch_neon.dir/src/dp/scan_diags.cpp.o.d -o CMakeFiles/arch_neon.dir/src/dp/scan_diags.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/scan_diags.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/cell_update.h:23, from /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:34: /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h: In instantiation of ‘void set_channel(ForwardCell&, int, typename ARCH_GENERIC::ScoreTraits::Score) [with Sv = int; typename ARCH_GENERIC::ScoreTraits::Score = int]’: /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:76:15: required from ‘void DP::Swipe::ARCH_GENERIC::Matrix::set_zero(int) [with Sv = ForwardCell]’ 76 | set_channel(hgap_[i], c, z); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:232:17: required from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, ForwardCell, VectorIdMask >]’ 232 | dp.set_zero(c); | ~~~~~~~~~~~^~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:141:61: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::dispatch_swipe(It, It, std::atomic*, Cbs, std::vector&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, ForwardCell, VectorIdMask >]’ 141 | return ::DP::Swipe::DISPATCH_ARCH::swipe(begin, end, next, composition_bias, overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:154:44: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::dispatch_swipe(It, It, std::atomic*, std::vector&, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, ForwardCell, VectorIdMask >]’ 154 | return dispatch_swipe(begin, end, next, NoCBS(), overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:177:38: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::dispatch_swipe(It, It, std::atomic*, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ 177 | return dispatch_swipe(begin, end, next, overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:277:32: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::swipe_threads(It, It, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ 277 | return dispatch_swipe(begin, end, &next, overflow, round, bin, p); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:341:35: required from ‘std::pair, std::vector > DP::BandedSwipe::ARCH_GENERIC::swipe_bin(unsigned int, It, It, int, DP::Params&) [with It = __gnu_cxx::__normal_iterator >]’ 341 | out = swipe_threads(begin, end, overflow, round, bin, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:397:21: required from here 397 | auto r = swipe_bin(bin, dp_targets[bin].begin(), dp_targets[bin].end(), 1, params); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h:100:21: warning: casting ‘ForwardCell’ to ‘int&’ does not use ‘ForwardCell::operator int32_t() const’ [-Wcast-user-defined] 100 | set_channel((Sv&)v, i, x); | ^~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h: In instantiation of ‘void set_channel(BackwardCell&, int, typename ARCH_GENERIC::ScoreTraits::Score) [with Sv = int; typename ARCH_GENERIC::ScoreTraits::Score = int]’: /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:76:15: required from ‘void DP::Swipe::ARCH_GENERIC::Matrix::set_zero(int) [with Sv = BackwardCell]’ 76 | set_channel(hgap_[i], c, z); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:232:17: required from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, BackwardCell, VectorIdMask >]’ 232 | dp.set_zero(c); | ~~~~~~~~~~~^~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:141:61: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::dispatch_swipe(It, It, std::atomic*, Cbs, std::vector&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, BackwardCell, VectorIdMask >]’ 141 | return ::DP::Swipe::DISPATCH_ARCH::swipe(begin, end, next, composition_bias, overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:154:44: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::dispatch_swipe(It, It, std::atomic*, std::vector&, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, BackwardCell, VectorIdMask >]’ 154 | return dispatch_swipe(begin, end, next, NoCBS(), overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:187:38: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::dispatch_swipe(It, It, std::atomic*, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ 187 | return dispatch_swipe(begin, end, next, overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:277:32: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::swipe_threads(It, It, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ 277 | return dispatch_swipe(begin, end, &next, overflow, round, bin, p); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:341:35: required from ‘std::pair, std::vector > DP::BandedSwipe::ARCH_GENERIC::swipe_bin(unsigned int, It, It, int, DP::Params&) [with It = __gnu_cxx::__normal_iterator >]’ 341 | out = swipe_threads(begin, end, overflow, round, bin, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:397:21: required from here 397 | auto r = swipe_bin(bin, dp_targets[bin].begin(), dp_targets[bin].end(), 1, params); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h:158:21: warning: casting ‘BackwardCell’ to ‘int&’ does not use ‘BackwardCell::operator int32_t() const’ [-Wcast-user-defined] 158 | set_channel((Sv&)v, i, x); | ^~~~~~ [ 6%] Building CXX object CMakeFiles/arch_neon.dir/src/dp/pfscan/pfscan.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_NEON -DARCH_ID=4 -D__ARM_NEON -D__aarch64__ -DEigen=Eigen_NEON -MD -MT CMakeFiles/arch_neon.dir/src/dp/pfscan/pfscan.cpp.o -MF CMakeFiles/arch_neon.dir/src/dp/pfscan/pfscan.cpp.o.d -o CMakeFiles/arch_neon.dir/src/dp/pfscan/pfscan.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/pfscan/pfscan.cpp [ 7%] Building CXX object CMakeFiles/arch_neon.dir/src/dp/swipe/anchored_wrapper.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_NEON -DARCH_ID=4 -D__ARM_NEON -D__aarch64__ -DEigen=Eigen_NEON -MD -MT CMakeFiles/arch_neon.dir/src/dp/swipe/anchored_wrapper.cpp.o -MF CMakeFiles/arch_neon.dir/src/dp/swipe/anchored_wrapper.cpp.o.d -o CMakeFiles/arch_neon.dir/src/dp/swipe/anchored_wrapper.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/anchored_wrapper.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/cell_update.h:23, from /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:34: /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h: In instantiation of ‘void set_channel(ForwardCell&, int, typename ARCH_NEON::ScoreTraits::Score) [with Sv = int; typename ARCH_NEON::ScoreTraits::Score = int]’: /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:76:15: required from ‘void DP::Swipe::ARCH_NEON::Matrix::set_zero(int) [with Sv = ForwardCell]’ 76 | set_channel(hgap_[i], c, z); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:232:17: required from ‘std::__cxx11::list DP::Swipe::ARCH_NEON::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, ForwardCell, VectorIdMask >]’ 232 | dp.set_zero(c); | ~~~~~~~~~~~^~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:141:61: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::dispatch_swipe(It, It, std::atomic*, Cbs, std::vector&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, ForwardCell, VectorIdMask >]’ 141 | return ::DP::Swipe::DISPATCH_ARCH::swipe(begin, end, next, composition_bias, overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:154:44: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::dispatch_swipe(It, It, std::atomic*, std::vector&, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, ForwardCell, VectorIdMask >]’ 154 | return dispatch_swipe(begin, end, next, NoCBS(), overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:177:38: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::dispatch_swipe(It, It, std::atomic*, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ 177 | return dispatch_swipe(begin, end, next, overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:277:32: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::swipe_threads(It, It, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ 277 | return dispatch_swipe(begin, end, &next, overflow, round, bin, p); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:341:35: required from ‘std::pair, std::vector > DP::BandedSwipe::ARCH_NEON::swipe_bin(unsigned int, It, It, int, DP::Params&) [with It = __gnu_cxx::__normal_iterator >]’ 341 | out = swipe_threads(begin, end, overflow, round, bin, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:397:21: required from here 397 | auto r = swipe_bin(bin, dp_targets[bin].begin(), dp_targets[bin].end(), 1, params); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h:100:21: warning: casting ‘ForwardCell’ to ‘int&’ does not use ‘ForwardCell::operator int32_t() const’ [-Wcast-user-defined] 100 | set_channel((Sv&)v, i, x); | ^~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h: In instantiation of ‘void set_channel(BackwardCell&, int, typename ARCH_NEON::ScoreTraits::Score) [with Sv = int; typename ARCH_NEON::ScoreTraits::Score = int]’: /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:76:15: required from ‘void DP::Swipe::ARCH_NEON::Matrix::set_zero(int) [with Sv = BackwardCell]’ 76 | set_channel(hgap_[i], c, z); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:232:17: required from ‘std::__cxx11::list DP::Swipe::ARCH_NEON::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, BackwardCell, VectorIdMask >]’ 232 | dp.set_zero(c); | ~~~~~~~~~~~^~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:141:61: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::dispatch_swipe(It, It, std::atomic*, Cbs, std::vector&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, BackwardCell, VectorIdMask >]’ 141 | return ::DP::Swipe::DISPATCH_ARCH::swipe(begin, end, next, composition_bias, overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:154:44: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::dispatch_swipe(It, It, std::atomic*, std::vector&, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, BackwardCell, VectorIdMask >]’ 154 | return dispatch_swipe(begin, end, next, NoCBS(), overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:187:38: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::dispatch_swipe(It, It, std::atomic*, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ 187 | return dispatch_swipe(begin, end, next, overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:277:32: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::swipe_threads(It, It, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ 277 | return dispatch_swipe(begin, end, &next, overflow, round, bin, p); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:341:35: required from ‘std::pair, std::vector > DP::BandedSwipe::ARCH_NEON::swipe_bin(unsigned int, It, It, int, DP::Params&) [with It = __gnu_cxx::__normal_iterator >]’ 341 | out = swipe_threads(begin, end, overflow, round, bin, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:397:21: required from here 397 | auto r = swipe_bin(bin, dp_targets[bin].begin(), dp_targets[bin].end(), 1, params); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h:158:21: warning: casting ‘BackwardCell’ to ‘int&’ does not use ‘BackwardCell::operator int32_t() const’ [-Wcast-user-defined] 158 | set_channel((Sv&)v, i, x); | ^~~~~~ [ 8%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/scan_diags.cpp [ 8%] Building CXX object CMakeFiles/arch_neon.dir/src/dp/score_profile.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_NEON -DARCH_ID=4 -D__ARM_NEON -D__aarch64__ -DEigen=Eigen_NEON -MD -MT CMakeFiles/arch_neon.dir/src/dp/score_profile.cpp.o -MF CMakeFiles/arch_neon.dir/src/dp/score_profile.cpp.o.d -o CMakeFiles/arch_neon.dir/src/dp/score_profile.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/score_profile.cpp [ 8%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/ungapped_simd.cpp [ 9%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/pfscan/pfscan.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/pfscan/pfscan.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/pfscan/pfscan.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/pfscan/pfscan.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/pfscan/pfscan.cpp [ 9%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/anchored_wrapper.cpp [ 10%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/score_profile.cpp In file included from /usr/include/c++/14/list:62, from /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:22: In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In file included from /usr/include/c++/14/list:62, from /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:22: In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_NEON::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_NEON::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_NEON::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_NEON::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_NEON::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_NEON::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_NEON::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_NEON::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_NEON::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' [ 10%] Built target arch_generic make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' [ 10%] Built target arch_neon make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/depend make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' cd /build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/diamond-aligner-2.1.9 /build/reproducible-path/diamond-aligner-2.1.9 /build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu/CMakeFiles/diamond.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/build make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' [ 11%] Building CXX object CMakeFiles/diamond.dir/src/run/main.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/run/main.cpp.o -MF CMakeFiles/diamond.dir/src/run/main.cpp.o.d -o CMakeFiles/diamond.dir/src/run/main.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/run/main.cpp [ 12%] Building CXX object CMakeFiles/diamond.dir/src/basic/config.cpp.o [ 12%] Building CXX object CMakeFiles/diamond.dir/src/stats/score_matrix.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/basic/config.cpp.o -MF CMakeFiles/diamond.dir/src/basic/config.cpp.o.d -o CMakeFiles/diamond.dir/src/basic/config.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/basic/config.cpp /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogprobproto.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogprobproto.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogprobproto.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprobproto.cpp [ 57%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_ioutil.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/njn_ioutil.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/njn_ioutil.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/njn_ioutil.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_ioutil.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:39, from /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.cpp:37: /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprob.hpp:110:37: warning: ‘virtual Njn::DynProgProb& Njn::DynProgProb::operator=(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 110 | virtual inline DynProgProb &operator= (const DynProgProb &dynProgProb_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:90:40: note: by ‘virtual Njn::DynProgProbLim& Njn::DynProgProbLim::operator=(const Njn::DynProgProbLim&)’ 90 | virtual inline DynProgProbLim &operator= (const DynProgProbLim &dynProgProbLim_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprob.hpp:124:22: warning: ‘virtual void Njn::DynProgProb::copy(size_t, const double* const*, size_t, long int, long int, long int, long int (*)(long int, size_t), size_t, const double*)’ was hidden [-Woverloaded-virtual=] 124 | virtual void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprob.hpp:116:29: warning: ‘virtual void Njn::DynProgProb::copy(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 116 | virtual inline void copy (const DynProgProb &dynProgProb_) | ^~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ [ 58%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstat.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstat.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstat.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstat.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_localmaxstat.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:39, from /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_localmaxstat.cpp:39: /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprob.hpp:110:37: warning: ‘virtual Njn::DynProgProb& Njn::DynProgProb::operator=(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 110 | virtual inline DynProgProb &operator= (const DynProgProb &dynProgProb_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:90:40: note: by ‘virtual Njn::DynProgProbLim& Njn::DynProgProbLim::operator=(const Njn::DynProgProbLim&)’ 90 | virtual inline DynProgProbLim &operator= (const DynProgProbLim &dynProgProbLim_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprob.hpp:124:22: warning: ‘virtual void Njn::DynProgProb::copy(size_t, const double* const*, size_t, long int, long int, long int, long int (*)(long int, size_t), size_t, const double*)’ was hidden [-Woverloaded-virtual=] 124 | virtual void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprob.hpp:116:29: warning: ‘virtual void Njn::DynProgProb::copy(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 116 | virtual inline void copy (const DynProgProb &dynProgProb_) | ^~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 58%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatmatrix.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatmatrix.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatmatrix.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatmatrix.cpp.o -c 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/build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_random.cpp [ 60%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alignment_evaluer.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alignment_evaluer.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alignment_evaluer.cpp.o -c 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/build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/sls_alp.cpp cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 61%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/sls_alp_data.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:39, from /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_localmaxstatutil.cpp:39: /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprob.hpp:110:37: warning: ‘virtual Njn::DynProgProb& Njn::DynProgProb::operator=(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 110 | virtual inline DynProgProb &operator= (const DynProgProb &dynProgProb_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:90:40: note: by ‘virtual Njn::DynProgProbLim& Njn::DynProgProbLim::operator=(const Njn::DynProgProbLim&)’ 90 | virtual inline DynProgProbLim &operator= (const DynProgProbLim &dynProgProbLim_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprob.hpp:124:22: warning: ‘virtual void Njn::DynProgProb::copy(size_t, const double* const*, size_t, long int, long int, long int, long int (*)(long int, size_t), size_t, const double*)’ was hidden [-Woverloaded-virtual=] 124 | virtual void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprob.hpp:116:29: warning: ‘virtual void Njn::DynProgProb::copy(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 116 | virtual inline void copy (const DynProgProb &dynProgProb_) | ^~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ [ 62%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/sls_alp_regression.cpp [ 62%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/sls_alp_sim.cpp [ 63%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_basic.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_basic.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_basic.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_basic.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/sls_basic.cpp [ 63%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_pvalues.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_pvalues.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_pvalues.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_pvalues.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/sls_pvalues.cpp cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 64%] Building CXX object 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CMakeFiles/arch_generic.dir/src/dp/pfscan/pfscan.cpp.o CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o CMakeFiles/arch_neon.dir/src/dp/swipe/banded_3frame_swipe.cpp.o CMakeFiles/arch_neon.dir/src/search/stage1_2.cpp.o CMakeFiles/arch_neon.dir/src/tools/benchmark.cpp.o CMakeFiles/arch_neon.dir/src/dp/swipe/swipe_wrapper.cpp.o CMakeFiles/arch_neon.dir/src/masking/tantan.cpp.o CMakeFiles/arch_neon.dir/src/dp/scan_diags.cpp.o CMakeFiles/arch_neon.dir/src/dp/ungapped_simd.cpp.o CMakeFiles/arch_neon.dir/src/dp/pfscan/pfscan.cpp.o CMakeFiles/arch_neon.dir/src/dp/swipe/anchored_wrapper.cpp.o CMakeFiles/arch_neon.dir/src/dp/score_profile.cpp.o -o diamond -lz make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' [100%] Built target diamond make[2]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9' cd debian/tests && PATH=/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games sh diamond-calls + mktemp -d + TESTDIR=/tmp/tmp.J27HjrolZa + diamond blastp --threads 1 --db test/C.faa.diamond --query test/E.faa --out /tmp/tmp.J27HjrolZa/E.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.02s] Algorithm: Double-indexed Building query histograms... [0.039s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.011s] Initializing temporary storage... [0s] Building reference histograms... [0.031s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.015s] Computing hash join... [0.008s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.011s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.02s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.011s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.004s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.005s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.021s] Building query seed array... [0.008s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.011s] Building query seed array... [0.011s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.024s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.029s] Building query seed array... [0.007s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.005s] Building query seed array... [0.009s] Computing hash join... [0.011s] Masking low complexity seeds... [0.006s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.021s] Building query seed array... [0.027s] Computing hash join... [0.003s] Masking low complexity seeds... [0.004s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.011s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.011s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.019s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.024s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.024s] Computing hash join... [0.008s] Masking low complexity seeds... [0.014s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.02s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.009s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.011s] Building query seed array... [0.016s] Computing hash join... [0.018s] Masking low complexity seeds... [0.015s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.006s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.016s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.016s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.017s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.014s] Building query seed array... [0.004s] Computing hash join... [0.008s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.021s] Building query seed array... [0.004s] Computing hash join... [0s] Masking low complexity seeds... [0.001s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0.004s] Masking low complexity seeds... [0.001s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.018s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.014s] Building query seed array... [0.011s] Computing hash join... [0.008s] Masking low complexity seeds... [0.007s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.028s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.019s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.032s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.035s] Computing hash join... [0.008s] Masking low complexity seeds... [0.009s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.024s] Computing hash join... [0.014s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.015s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.014s] Masking low complexity seeds... [0.005s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.02s] Building query seed array... [0.014s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.021s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.011s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.002s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.019s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.005s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.287s] Sorting trace points... [0s] Computing alignments... [0.289s] Deallocating buffers... [0s] Loading trace points... [0s] [0.578s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 5.047s Reported 77 pairwise alignments, 77 HSPs. 72 queries aligned. + diamond blastp --threads 1 --db test/E.faa.diamond --query test/C.faa --out /tmp/tmp.J27HjrolZa/C.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.023s] Algorithm: Double-indexed Building query histograms... [0.022s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.011s] Initializing temporary storage... [0s] Building reference histograms... [0.017s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.02s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.025s] Building query seed array... [0.024s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.028s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.012s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.024s] Computing hash join... [0.014s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.011s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.019s] Masking low complexity seeds... [0.012s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.015s] Computing hash join... [0.009s] Masking low complexity seeds... [0.01s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.02s] Computing hash join... [0.014s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.004s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.003s] Building query seed array... [0.008s] Computing hash join... [0.002s] Masking low complexity seeds... [0.001s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.01s] Building query seed array... [0.025s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.011s] Computing hash join... [0.001s] Masking low complexity seeds... [0.006s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.006s] Computing hash join... [0.003s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.004s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.004s] Building query seed array... [0.009s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.008s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.003s] Building query seed array... [0.011s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.024s] Computing hash join... [0.01s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.012s] Computing hash join... [0.01s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.021s] Building query seed array... [0.025s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.005s] Building query seed array... [0.002s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.01s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.026s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.009s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.026s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.012s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.016s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.02s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.025s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.011s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.015s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.033s] Building query seed array... [0.032s] Computing hash join... [0.011s] Masking low complexity seeds... [0.002s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.097s] Sorting trace points... [0s] Computing alignments... [0.075s] Deallocating buffers... [0.004s] Loading trace points... [0s] [0.178s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 4.654s Reported 41 pairwise alignments, 41 HSPs. 15 queries aligned. + diamond blastp --threads 1 --db test/C.faa.diamond --query test/L.faa --out /tmp/tmp.J27HjrolZa/L.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.052s] Algorithm: Double-indexed Building query histograms... [0.014s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.011s] Initializing temporary storage... [0s] Building reference histograms... [0.015s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.01s] Building query seed array... [0.011s] Computing hash join... [0.006s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.017s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.016s] Building query seed array... [0.023s] Computing hash join... [0.01s] Masking low complexity seeds... [0.017s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.016s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.022s] Computing hash join... [0.008s] Masking low complexity seeds... [0.004s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.017s] Building query seed array... [0.018s] Computing hash join... [0.008s] Masking low complexity seeds... [0.007s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.005s] Masking low complexity seeds... [0.007s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.017s] Computing hash join... [0.006s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.014s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.028s] Computing hash join... [0.011s] Masking low complexity seeds... [0.019s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.021s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.021s] Building query seed array... [0.013s] Computing hash join... [0.007s] Masking low complexity seeds... [0.015s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.006s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.008s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0.009s] Masking low complexity seeds... [0.001s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.012s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.011s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.032s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.012s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.017s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.004s] Building query seed array... [0.011s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.014s] Masking low complexity seeds... [0.005s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.015s] Computing hash join... [0s] Masking low complexity seeds... [0.003s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.009s] Building query seed array... [0.012s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.014s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.017s] Building query seed array... [0.021s] Computing hash join... [0.008s] Masking low complexity seeds... [0.015s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.018s] Computing hash join... [0.008s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.009s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.017s] Building query seed array... [0.026s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.017s] Computing hash join... [0.014s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.016s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.024s] Building query seed array... [0.011s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0.01s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.009s] Building query seed array... [0.003s] Computing hash join... [0.003s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.011s] Computing hash join... [0s] Masking low complexity seeds... [0.007s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.005s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.009s] Computing hash join... [0.002s] Masking low complexity seeds... [0.011s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.008s] Building query seed array... [0.018s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.284s] Sorting trace points... [0s] Computing alignments... [0.152s] Deallocating buffers... [0.006s] Loading trace points... [0s] [0.444s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 4.909s Reported 64 pairwise alignments, 64 HSPs. 33 queries aligned. + diamond blastp --threads 1 --db test/L.faa.diamond --query test/C.faa --out /tmp/tmp.J27HjrolZa/C.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.04s] Algorithm: Double-indexed Building query histograms... [0.017s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.001s] Initializing temporary storage... [0s] Building reference histograms... [0.012s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.01s] Building query seed array... [0.011s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.015s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.003s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.005s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.009s] Computing hash join... [0s] Masking low complexity seeds... [0.001s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.009s] Masking low complexity seeds... [0s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.01s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.021s] Building query seed array... [0.005s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.016s] Building query seed array... [0.026s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.01s] Building query seed array... [0.015s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.004s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.016s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.011s] Building query seed array... [0.028s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.017s] Building query seed array... [0.005s] Computing hash join... [0.001s] Masking low complexity seeds... [0.006s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.015s] Building query seed array... [0.011s] Computing hash join... [0.008s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.003s] Computing hash join... [0.002s] Masking low complexity seeds... [0.005s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.009s] Building query seed array... [0.004s] Computing hash join... [0.01s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.02s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.016s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.027s] Computing hash join... [0.008s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.012s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.028s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0.013s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.005s] Building query seed array... [0.005s] Computing hash join... [0.002s] Masking low complexity seeds... [0.002s] Searching alignments... [0.003s] Deallocating memory... [0.001s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.308s] Sorting trace points... [0s] Computing alignments... [0.28s] Deallocating buffers... [0.007s] Loading trace points... [0s] [0.597s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 5.313s Reported 133 pairwise alignments, 133 HSPs. 109 queries aligned. + diamond blastp --threads 1 --db test/C.faa.diamond --query test/M.faa --out /tmp/tmp.J27HjrolZa/M.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.039s] Algorithm: Double-indexed Building query histograms... [0.031s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.011s] Initializing temporary storage... [0s] Building reference histograms... [0.031s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.025s] Building query seed array... [0.025s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.006s] Building query seed array... [0.015s] Computing hash join... [0.014s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.005s] Building query seed array... [0.007s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.01s] Building query seed array... [0.008s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.016s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.013s] Computing hash join... [0.01s] Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.015s] Computing hash join... [0.003s] Masking low complexity seeds... [0.002s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.02s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.016s] Computing hash join... [0.014s] Masking low complexity seeds... [0.008s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.02s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.016s] Computing hash join... [0.003s] Masking low complexity seeds... [0.004s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.041s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.022s] Computing hash join... [0.003s] Masking low complexity seeds... [0.005s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.01s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0.002s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.004s] Building query seed array... [0.01s] Computing hash join... [0.003s] Masking low complexity seeds... [0.002s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.003s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.007s] Computing hash join... [0.008s] Masking low complexity seeds... [0.007s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.014s] Computing hash join... [0s] Masking low complexity seeds... [0.007s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.011s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.005s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.004s] Building query seed array... [0.009s] Computing hash join... [0.014s] Masking low complexity seeds... [0.002s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.01s] Building query seed array... [0.011s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.008s] Computing hash join... [0.003s] Masking low complexity seeds... [0.001s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.004s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.009s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.015s] Computing hash join... [0s] Masking low complexity seeds... [0.001s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.005s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0.002s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.218s] Sorting trace points... [0s] Computing alignments... [0.152s] Deallocating buffers... [0s] Loading trace points... [0s] [0.373s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 4.845s Reported 62 pairwise alignments, 62 HSPs. 33 queries aligned. + diamond blastp --threads 1 --db test/M.faa.diamond --query test/C.faa --out /tmp/tmp.J27HjrolZa/C.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.049s] Algorithm: Double-indexed Building query histograms... [0.036s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.011s] Initializing temporary storage... [0s] Building reference histograms... [0.04s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.016s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.005s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.01s] Computing hash join... [0.003s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.008s] Computing hash join... [0s] Masking low complexity seeds... [0.001s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.008s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.017s] Computing hash join... [0.007s] Masking low complexity seeds... [0.01s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0.002s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.01s] Computing hash join... [0.002s] Masking low complexity seeds... [0.01s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.004s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.006s] Building query seed array... [0.011s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.002s] Computing hash join... [0.003s] Masking low complexity seeds... [0.008s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.009s] Building query seed array... [0.004s] Computing hash join... [0.004s] Masking low complexity seeds... [0.001s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.017s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.006s] Computing hash join... [0.007s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.004s] Computing hash join... [0.002s] Masking low complexity seeds... [0.001s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.006s] Building query seed array... [0.006s] Computing hash join... [0s] Masking low complexity seeds... [0.002s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0.001s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.012s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.004s] Building query seed array... [0.018s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.004s] Building query seed array... [0.018s] Computing hash join... [0.005s] Masking low complexity seeds... [0.001s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.015s] Computing hash join... [0.004s] Masking low complexity seeds... [0.003s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0.007s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.015s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0.004s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.021s] Building query seed array... [0.023s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.005s] Building query seed array... [0.01s] Computing hash join... [0.004s] Masking low complexity seeds... [0.006s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.015s] Computing hash join... [0.003s] Masking low complexity seeds... [0.006s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.017s] Building query seed array... [0.004s] Computing hash join... [0.002s] Masking low complexity seeds... [0.009s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.009s] Building query seed array... [0.004s] Computing hash join... [0.009s] Masking low complexity seeds... [0.013s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.004s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.008s] Computing hash join... [0.003s] Masking low complexity seeds... [0.002s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0.01s] Masking low complexity seeds... [0.006s] Searching alignments... [0.003s] Deallocating memory... [0.001s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.214s] Sorting trace points... [0s] Computing alignments... [0.175s] Deallocating buffers... [0s] Loading trace points... [0s] [0.391s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 3.844s Reported 131 pairwise alignments, 131 HSPs. 109 queries aligned. + diamond blastp --ignore-warnings --threads 1 --db test/C.faa.diamond --query test/C2.faa --out /tmp/tmp.J27HjrolZa/C2.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.002s] Algorithm: Double-indexed Building query histograms... [0.002s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.003s] Initializing temporary storage... [0.002s] Building reference histograms... [0.015s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.006s] Building query seed array... [0.005s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.015s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.015s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.016s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.006s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.024s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.011s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.002s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.015s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.031s] Computing hash join... [0.016s] Masking low complexity seeds... [0.007s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.018s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.02s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.024s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.02s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.01s] Building query seed array... [0.012s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.035s] Sorting trace points... [0s] Computing alignments... [0.015s] Deallocating buffers... [0.007s] Loading trace points... [0s] [0.059s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 5.082s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/C.faa --out /tmp/tmp.J27HjrolZa/C.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0.004s] Masking queries... [0.047s] Algorithm: Double-indexed Building query histograms... [0.031s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.015s] Initializing temporary storage... [0s] Building reference histograms... [0.019s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.035s] Building query seed array... [0.008s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.011s] Building query seed array... [0.009s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.014s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.023s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.01s] Building query seed array... [0.031s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.02s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.019s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.015s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.005s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.024s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.009s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.02s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.011s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.023s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.019s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.023s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.004s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.011s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.006s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0.008s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.011s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.011s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.011s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.039s] Sorting trace points... [0s] Computing alignments... [0.015s] Deallocating buffers... [0.007s] Loading trace points... [0s] [0.063s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 3.837s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/E.faa.diamond --query test/L.faa --out /tmp/tmp.J27HjrolZa/L.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.052s] Algorithm: Double-indexed Building query histograms... [0.035s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.003s] Initializing temporary storage... [0s] Building reference histograms... [0.009s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.035s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.02s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.034s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.016s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.036s] Building query seed array... [0.018s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.017s] Computing hash join... [0.006s] Masking low complexity seeds... [0.001s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.01s] Masking low complexity seeds... [0.013s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.035s] Building query seed array... [0.028s] Computing hash join... [0.005s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.023s] Computing hash join... [0.019s] Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.035s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.035s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.022s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0.006s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.006s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.031s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.031s] Computing hash join... [0.014s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.026s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.039s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.011s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.024s] Building query seed array... [0.036s] Computing hash join... [0s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.024s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.019s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.02s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0.005s] Masking low complexity seeds... [0.007s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.011s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.071s] Sorting trace points... [0s] Computing alignments... [0.36s] Deallocating buffers... [0s] Loading trace points... [0s] [0.434s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 4.153s Reported 489 pairwise alignments, 489 HSPs. 32 queries aligned. + diamond blastp --threads 1 --db test/L.faa.diamond --query test/E.faa --out /tmp/tmp.J27HjrolZa/E.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.022s] Algorithm: Double-indexed Building query histograms... [0.009s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.003s] Initializing temporary storage... [0s] Building reference histograms... [0.005s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.002s] Computing hash join... [0.02s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.008s] Computing hash join... [0s] Masking low complexity seeds... [0.016s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.016s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.004s] Building query seed array... [0.016s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.017s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.02s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.01s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.011s] Building query seed array... [0.011s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.021s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.019s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.02s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.027s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.035s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.025s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.024s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.039s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.028s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.016s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0.007s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.006s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.008s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.013s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.183s] Sorting trace points... [0s] Computing alignments... [0.567s] Deallocating buffers... [0s] Loading trace points... [0s] [0.752s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 5.797s Reported 1173 pairwise alignments, 1173 HSPs. 72 queries aligned. + diamond blastp --threads 1 --db test/E.faa.diamond --query test/M.faa --out /tmp/tmp.J27HjrolZa/M.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.042s] Algorithm: Double-indexed Building query histograms... [0.023s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.01s] Initializing temporary storage... [0s] Building reference histograms... [0.036s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.01s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.016s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.016s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.004s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.02s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.025s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.008s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.017s] Building query seed array... [0.022s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.016s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.01s] Computing hash join... [0.007s] Masking low complexity seeds... [0.002s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.017s] Building query seed array... [0.04s] Computing hash join... [0.004s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.016s] Computing hash join... [0.01s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.009s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.017s] Computing hash join... [0.014s] Masking low complexity seeds... [0.007s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.004s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.019s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.02s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.02s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.018s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.015s] Computing hash join... [0.003s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.011s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0.019s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.011s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.016s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.016s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.011s] Computing hash join... [0.003s] Masking low complexity seeds... [0.007s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.267s] Sorting trace points... [0s] Computing alignments... [0.543s] Deallocating buffers... [0.007s] Loading trace points... [0s] [0.819s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 5.675s Reported 489 pairwise alignments, 489 HSPs. 32 queries aligned. + diamond blastp --threads 1 --db test/M.faa.diamond --query test/E.faa --out /tmp/tmp.J27HjrolZa/E.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.02s] Algorithm: Double-indexed Building query histograms... [0.035s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.007s] Initializing temporary storage... [0s] Building reference histograms... [0.027s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.008s] Masking low complexity seeds... [0.008s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.02s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.02s] Computing hash join... [0.015s] Masking low complexity seeds... [0.004s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0.007s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.004s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.018s] Computing hash join... [0.009s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.02s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.009s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.01s] Computing hash join... [0s] Masking low complexity seeds... [0.008s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.019s] Computing hash join... [0.008s] Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.011s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.009s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.011s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.02s] Computing hash join... [0.006s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.017s] Building query seed array... [0.022s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0.007s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.023s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.024s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.03s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.004s] Masking low complexity seeds... [0.007s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.031s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.038s] Building query seed array... [0.008s] Computing hash join... [0.016s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.011s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.004s] Building query seed array... [0.004s] Computing hash join... [0.004s] Masking low complexity seeds... [0.008s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.017s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.01s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.004s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.011s] Building query seed array... [0.025s] Computing hash join... [0.006s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.02s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.028s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.02s] Computing hash join... [0.008s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.002s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.017s] Building query seed array... [0.018s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.02s] Building query seed array... [0.02s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.016s] Building query seed array... [0.019s] Computing hash join... [0.008s] Masking low complexity seeds... [0.015s] Searching alignments... [0.009s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.334s] Sorting trace points... [0s] Computing alignments... [0.611s] Deallocating buffers... [0s] Loading trace points... [0s] [0.947s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 5.214s Reported 1173 pairwise alignments, 1173 HSPs. 72 queries aligned. + diamond blastp --ignore-warnings --threads 1 --db test/E.faa.diamond --query test/C2.faa --out /tmp/tmp.J27HjrolZa/C2.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0s] Algorithm: Double-indexed Building query histograms... [0.018s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.014s] Initializing temporary storage... [0s] Building reference histograms... [0.035s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.017s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.018s] Building query seed array... [0.015s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.007s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.015s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.005s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.011s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.004s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.006s] Building query seed array... [0.009s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.02s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.011s] Building query seed array... [0.011s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.018s] Building query seed array... [0.014s] Computing hash join... [0.009s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.008s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.004s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.018s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.007s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.026s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.004s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.018s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.024s] Building query seed array... [0.022s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.019s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.023s] Computing hash join... [0.005s] Masking low complexity seeds... [0.014s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.015s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.027s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.025s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.013s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.031s] Sorting trace points... [0s] Computing alignments... [0.011s] Deallocating buffers... [0.003s] Loading trace points... [0s] [0.047s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 5.126s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/E.faa --out /tmp/tmp.J27HjrolZa/E.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.026s] Algorithm: Double-indexed Building query histograms... [0.043s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.003s] Initializing temporary storage... [0s] Building reference histograms... [0.031s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.01s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.018s] Building query seed array... [0.008s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.012s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.011s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.002s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.011s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.018s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.015s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.015s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.016s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0.001s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.008s] Building query seed array... [0.019s] Computing hash join... [0.008s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0.005s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.011s] Building query seed array... [0.007s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.024s] Computing hash join... [0s] Masking low complexity seeds... [0.001s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.02s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.007s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.028s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.009s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.003s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.018s] Computing hash join... [0.001s] Masking low complexity seeds... [0.004s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.026s] Computing hash join... [0.008s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.011s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.035s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.005s] Building query seed array... [0.008s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.015s] Computing hash join... [0.019s] Masking low complexity seeds... [0.003s] Searching alignments... [0.021s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.034s] Sorting trace points... [0s] Computing alignments... [0.015s] Deallocating buffers... [0.007s] Loading trace points... [0s] [0.059s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 4.743s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/L.faa.diamond --query test/M.faa --out /tmp/tmp.J27HjrolZa/M.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0.004s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.042s] Algorithm: Double-indexed Building query histograms... [0.031s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.011s] Initializing temporary storage... [0s] Building reference histograms... [0.035s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.024s] Computing hash join... [0.01s] Masking low complexity seeds... [0.012s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.021s] Computing hash join... [0.014s] Masking low complexity seeds... [0.019s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.014s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.02s] Building query seed array... [0.022s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.012s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.022s] Computing hash join... [0.013s] Masking low complexity seeds... [0.008s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.014s] Building query seed array... [0.016s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.016s] Building query seed array... [0.02s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.021s] Building query seed array... [0.022s] Computing hash join... [0.01s] Masking low complexity seeds... [0.009s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.016s] Building query seed array... [0.02s] Computing hash join... [0.008s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.024s] Building query seed array... [0.019s] Computing hash join... [0.008s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.017s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.02s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.004s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.015s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.035s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.032s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.007s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.008s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.016s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.015s] Computing hash join... [0.008s] Masking low complexity seeds... [0.01s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.015s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.011s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0.001s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.005s] Building query seed array... [0.017s] Computing hash join... [0.003s] Masking low complexity seeds... [0.004s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.006s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.017s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.016s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.008s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.02s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.003s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.004s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.018s] Building query seed array... [0.012s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.005s] Building query seed array... [0.014s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.016s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.02s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.031s] Computing hash join... [0.004s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.005s] Building query seed array... [0.005s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.02s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.024s] Building query seed array... [0.03s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.283s] Sorting trace points... [0s] Computing alignments... [0.241s] Deallocating buffers... [0s] Loading trace points... [0s] [0.525s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 5.149s Reported 390 pairwise alignments, 390 HSPs. 39 queries aligned. + diamond blastp --threads 1 --db test/M.faa.diamond --query test/L.faa --out /tmp/tmp.J27HjrolZa/L.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.042s] Algorithm: Double-indexed Building query histograms... [0.031s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.007s] Initializing temporary storage... [0s] Building reference histograms... [0.031s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.015s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.016s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.004s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.016s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.016s] Computing hash join... [0.007s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0.008s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.024s] Building query seed array... [0.02s] Computing hash join... [0.006s] Masking low complexity seeds... [0.008s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.018s] Computing hash join... [0.008s] Masking low complexity seeds... [0.014s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.02s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.02s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.004s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.004s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.012s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0.002s] Masking low complexity seeds... [0.007s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.005s] Building query seed array... [0.019s] Computing hash join... [0.01s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0.005s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.011s] Computing hash join... [0.007s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.015s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.005s] Building query seed array... [0.018s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.016s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.016s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.007s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.02s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.02s] Building query seed array... [0.007s] Computing hash join... [0.011s] Masking low complexity seeds... [0.004s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.007s] Computing hash join... [0.008s] Masking low complexity seeds... [0.003s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.007s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.011s] Computing hash join... [0.003s] Masking low complexity seeds... [0.004s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.011s] Building query seed array... [0.012s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.018s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.02s] Computing hash join... [0.015s] Masking low complexity seeds... [0.013s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.01s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.004s] Masking low complexity seeds... [0.007s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.009s] Computing hash join... [0.004s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.02s] Building query seed array... [0.016s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.02s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.016s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.009s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.023s] Computing hash join... [0s] Masking low complexity seeds... [0.01s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.032s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.02s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.007s] Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.02s] Computing hash join... [0.014s] Masking low complexity seeds... [0.004s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.016s] Building query seed array... [0.016s] Computing hash join... [0.001s] Masking low complexity seeds... [0.005s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.02s] Building query seed array... [0.027s] Computing hash join... [0.012s] Masking low complexity seeds... [0.015s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.02s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.021s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.024s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.016s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.02s] Building query seed array... [0.02s] Computing hash join... [0.015s] Masking low complexity seeds... [0.008s] Searching alignments... [0.013s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.292s] Sorting trace points... [0s] Computing alignments... [0.229s] Deallocating buffers... [0s] Loading trace points... [0s] [0.523s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 4.619s Reported 390 pairwise alignments, 390 HSPs. 40 queries aligned. + diamond blastp --ignore-warnings --threads 1 --db test/L.faa.diamond --query test/C2.faa --out /tmp/tmp.J27HjrolZa/C2.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0.001s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.013s] Algorithm: Double-indexed Building query histograms... [0.001s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.001s] Initializing temporary storage... [0s] Building reference histograms... [0.005s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.028s] Building query seed array... [0.016s] Computing hash join... [0.007s] Masking low complexity seeds... [0.012s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.011s] Building query seed array... [0.032s] Computing hash join... [0.015s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.018s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.016s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.02s] Computing hash join... [0.004s] Masking low complexity seeds... [0.012s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.011s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.015s] Computing hash join... [0.004s] Masking low complexity seeds... [0.002s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.011s] Building query seed array... [0.011s] Computing hash join... [0.003s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.032s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.003s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.004s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.028s] Building query seed array... [0.033s] Computing hash join... [0.004s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.024s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.022s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.011s] Computing hash join... [0.003s] Masking low complexity seeds... [0.008s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.016s] Building query seed array... [0.015s] Computing hash join... [0.008s] Masking low complexity seeds... [0.012s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.015s] Computing hash join... [0.008s] Masking low complexity seeds... [0.003s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.015s] Computing hash join... [0.004s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.016s] Building query seed array... [0.015s] Computing hash join... [0.004s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.016s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.004s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.021s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.039s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.016s] Building query seed array... [0.015s] Computing hash join... [0.004s] Masking low complexity seeds... [0.003s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.009s] Computing hash join... [0s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.02s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.013s] Computing hash join... [0.006s] Masking low complexity seeds... [0.004s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.004s] Masking low complexity seeds... [0.015s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.016s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.024s] Computing hash join... [0.003s] Masking low complexity seeds... [0.007s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.019s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.003s] Computing hash join... [0.001s] Masking low complexity seeds... [0.003s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.015s] Computing hash join... [0.009s] Masking low complexity seeds... [0.01s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.02s] Building query seed array... [0.004s] Computing hash join... [0s] Masking low complexity seeds... [0.003s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.015s] Computing hash join... [0.004s] Masking low complexity seeds... [0.003s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.016s] Computing hash join... [0.003s] Masking low complexity seeds... [0.007s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.01s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.031s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.016s] Building query seed array... [0.004s] Computing hash join... [0.006s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.01s] Computing hash join... [0s] Masking low complexity seeds... [0.015s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.015s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.008s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.022s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.016s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.025s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.03s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.007s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.01s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.011s] Computing hash join... [0.003s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.018s] Sorting trace points... [0s] Computing alignments... [0.003s] Deallocating buffers... [0s] Loading trace points... [0s] [0.023s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 3.769s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/L.faa --out /tmp/tmp.J27HjrolZa/L.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.037s] Algorithm: Double-indexed Building query histograms... [0.007s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.001s] Initializing temporary storage... [0s] Building reference histograms... [0.001s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.006s] Building query seed array... [0.012s] Computing hash join... [0.006s] Masking low complexity seeds... [0.002s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.008s] Computing hash join... [0.003s] Masking low complexity seeds... [0.004s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.026s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.019s] Computing hash join... [0.004s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.015s] Building query seed array... [0.016s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.016s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.02s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.018s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.003s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.011s] Building query seed array... [0.007s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.007s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.004s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.015s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.009s] Building query seed array... [0.009s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.016s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.009s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.007s] Computing hash join... [0.008s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.008s] Building query seed array... [0.015s] Computing hash join... [0.003s] Masking low complexity seeds... [0.008s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.015s] Computing hash join... [0.003s] Masking low complexity seeds... [0.012s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.016s] Building query seed array... [0.021s] Computing hash join... [0.01s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.019s] Computing hash join... [0.004s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.008s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.003s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.02s] Building query seed array... [0.011s] Computing hash join... [0.004s] Masking low complexity seeds... [0.001s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.031s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.015s] Building query seed array... [0.02s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.016s] Building query seed array... [0.022s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.02s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.018s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.01s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.004s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.016s] Building query seed array... [0.019s] Computing hash join... [0.009s] Masking low complexity seeds... [0.013s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.011s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.01s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.021s] Building query seed array... [0.019s] Computing hash join... [0.004s] Masking low complexity seeds... [0.007s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.017s] Computing hash join... [0.01s] Masking low complexity seeds... [0.004s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.021s] Building query seed array... [0.011s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.02s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.024s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.011s] Building query seed array... [0.016s] Computing hash join... [0.008s] Masking low complexity seeds... [0.008s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.012s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.018s] Computing hash join... [0.005s] Masking low complexity seeds... [0.006s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.015s] Computing hash join... [0s] Masking low complexity seeds... [0.001s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.009s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.038s] Sorting trace points... [0s] Computing alignments... [0.011s] Deallocating buffers... [0.007s] Loading trace points... [0s] [0.059s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 4.005s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --ignore-warnings --threads 1 --db test/M.faa.diamond --query test/C2.faa --out /tmp/tmp.J27HjrolZa/C2.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.008s] Algorithm: Double-indexed Building query histograms... [0.023s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.011s] Initializing temporary storage... [0.001s] Building reference histograms... [0.018s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.004s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.013s] Computing hash join... [0.018s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.016s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.016s] Computing hash join... [0.011s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.02s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0.002s] Searching alignments... [0s] Deallocating memory... [0.001s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.016s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.028s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.004s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.035s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.007s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.011s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.011s] Building query seed array... [0.032s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.009s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.016s] Computing hash join... [0.009s] Masking low complexity seeds... [0.012s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.009s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.041s] Building query seed array... [0.012s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.011s] Computing hash join... [0.001s] Masking low complexity seeds... [0.011s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.013s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.012s] Computing hash join... [0.007s] Masking low complexity seeds... [0.012s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.02s] Computing hash join... [0.008s] Masking low complexity seeds... [0.007s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.02s] Building query seed array... [0.015s] Computing hash join... [0.004s] Masking low complexity seeds... [0.003s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.016s] Computing hash join... [0.003s] Masking low complexity seeds... [0.004s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.012s] Computing hash join... [0.008s] Masking low complexity seeds... [0.007s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.028s] Building query seed array... [0.011s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.029s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.007s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.01s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.018s] Computing hash join... [0.005s] Masking low complexity seeds... [0.002s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.008s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0.007s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.008s] Computing hash join... [0.002s] Masking low complexity seeds... [0.003s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.01s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.007s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.016s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.018s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.007s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0.011s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.013s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.011s] Computing hash join... [0.008s] Masking low complexity seeds... [0.012s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.02s] Building query seed array... [0.027s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.011s] Masking low complexity seeds... [0.004s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.002s] Sorting trace points... [0s] Computing alignments... [0.003s] Deallocating buffers... [0s] Loading trace points... [0s] [0.006s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 3.656s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/M.faa --out /tmp/tmp.J27HjrolZa/M.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.019s] Algorithm: Double-indexed Building query histograms... [0.027s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.008s] Initializing temporary storage... [0s] Building reference histograms... [0.019s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.009s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.015s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.025s] Computing hash join... [0.014s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.015s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.01s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.023s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0.003s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.019s] Computing hash join... [0.004s] Masking low complexity seeds... [0.003s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.025s] Computing hash join... [0.006s] Masking low complexity seeds... [0.019s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0.001s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.018s] Computing hash join... [0.004s] Masking low complexity seeds... [0.008s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.008s] Building query seed array... [0.014s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.016s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.021s] Computing hash join... [0.014s] Masking low complexity seeds... [0.007s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.009s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.026s] Computing hash join... [0.009s] Masking low complexity seeds... [0.008s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.018s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.02s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.023s] Masking low complexity seeds... [0.003s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.01s] Building query seed array... [0.007s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.015s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.007s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.024s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.011s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.019s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.019s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.024s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.026s] Computing hash join... [0.009s] Masking low complexity seeds... [0.014s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.025s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.046s] Sorting trace points... [0s] Computing alignments... [0.015s] Deallocating buffers... [0.007s] Loading trace points... [0s] [0.071s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 4.868s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + rm -rf /tmp/tmp.J27HjrolZa make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/diamond-aligner/ cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/diamond-aligner-2.1.9/debian/diamond-aligner AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/diamond-aligner-2.1.9 -B/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/diamond-aligner-2.1.9/debian/diamond-aligner/usr/bin/diamond make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9' dh_compress --exclude=.pdf make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9' dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'diamond-aligner-dbgsym' in '../diamond-aligner-dbgsym_2.1.9-1_arm64.deb'. dpkg-deb: building package 'diamond-aligner' in '../diamond-aligner_2.1.9-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../diamond-aligner_2.1.9-1_arm64.buildinfo dpkg-genchanges --build=binary -O../diamond-aligner_2.1.9-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/870888 and its subdirectories I: Current time: Thu Sep 26 18:10:27 -12 2024 I: pbuilder-time-stamp: 1727417427 Fri Sep 27 06:10:27 UTC 2024 I: Signing ./b1/diamond-aligner_2.1.9-1_arm64.buildinfo as diamond-aligner_2.1.9-1_arm64.buildinfo.asc Fri Sep 27 06:10:27 UTC 2024 I: Signed ./b1/diamond-aligner_2.1.9-1_arm64.buildinfo as ./b1/diamond-aligner_2.1.9-1_arm64.buildinfo.asc Fri Sep 27 06:10:28 UTC 2024 - build #1 for diamond-aligner/unstable/arm64 on codethink02-arm64 done. Starting cleanup. All cleanup done. Fri Sep 27 06:10:28 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-GjS4iTix, removing. /srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Sep 27 06:10 b1 drwxr-xr-x 2 jenkins jenkins 4096 Sep 27 06:03 b2 -rw-r--r-- 1 jenkins jenkins 2199 Feb 7 2024 diamond-aligner_2.1.9-1.dsc -rw------- 1 jenkins jenkins 3364 Sep 27 06:03 rbuildlog.Q3qctgr /srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq/b1: total 41616 -rw-r--r-- 1 jenkins jenkins 670354 Sep 27 06:10 build.log -rw-r--r-- 1 jenkins jenkins 35484716 Sep 27 06:10 diamond-aligner-dbgsym_2.1.9-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 129068 Sep 27 06:10 diamond-aligner_2.1.9-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2199 Sep 27 06:10 diamond-aligner_2.1.9-1.dsc -rw-r--r-- 1 jenkins jenkins 5940 Sep 27 06:10 diamond-aligner_2.1.9-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 6822 Sep 27 06:10 diamond-aligner_2.1.9-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1428 Sep 27 06:10 diamond-aligner_2.1.9-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 1935264 Sep 27 06:10 diamond-aligner_2.1.9-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 1543 Sep 27 06:10 diamond-aligner_2.1.9-1_source.changes -rw-r--r-- 1 jenkins jenkins 4309956 Sep 27 06:10 diamond-aligner_2.1.9.orig.tar.xz /srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq/b2: total 0 Fri Sep 27 06:10:39 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Sep 26 18:03:32 -12 2024 I: pbuilder-time-stamp: 1727417012 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [diamond-aligner_2.1.9-1.dsc] I: copying [./diamond-aligner_2.1.9.orig.tar.xz] I: copying [./diamond-aligner_2.1.9-1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Feb 7 10:24:42 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./diamond-aligner_2.1.9-1.dsc: no acceptable signature found dpkg-source: info: extracting diamond-aligner in diamond-aligner-2.1.9 dpkg-source: info: unpacking diamond-aligner_2.1.9.orig.tar.xz dpkg-source: info: unpacking diamond-aligner_2.1.9-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/870888/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='699c8dfba7d74e83ba4f59bbebbe5707' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='870888' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq/pbuilderrc_w79p --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq/b1 --logfile b1/build.log diamond-aligner_2.1.9-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/870888/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, zlib1g-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19897 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 54 newly installed, 0 to remove and 0 not upgraded. Need to get 35.5 MB of archives. After unpacking 137 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-5 [61.3 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-5 [868 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-8 [96.6 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.1 [630 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-1 [323 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b4 [292 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.1-1 [22.8 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-3 [9112 B] Get: 26 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3 [174 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.63.0-1 [71.2 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.0-7 [208 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.10.1-1 [322 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.3-1 [90.2 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libjsoncpp25 arm64 1.9.5-6+b2 [73.2 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 librhash0 arm64 1.4.3-3+b1 [127 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.48.0-6 [142 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 cmake-data all 3.30.3-1 [2221 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 cmake arm64 3.30.3-1 [9398 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 48 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.191-2 [188 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB] Fetched 35.5 MB in 1s (67.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19897 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-5_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-5) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-5_arm64.deb ... Unpacking procps (2:4.0.4-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.2-8_arm64.deb ... Unpacking bsdextrautils (2.40.2-8) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../10-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/diamond-aligner-2.1.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../diamond-aligner_2.1.9-1_source.changes dpkg-buildpackage: info: source package diamond-aligner dpkg-buildpackage: info: source version 2.1.9-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9' dh_auto_configure -- -DX86=OFF -DCMAKE_BUILD_TYPE=Release cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DX86=OFF -DCMAKE_BUILD_TYPE=Release .. 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-Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/swipe/banded_3frame_swipe.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/swipe/banded_3frame_swipe.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/swipe/banded_3frame_swipe.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/banded_3frame_swipe.cpp [ 2%] Building CXX object CMakeFiles/arch_generic.dir/src/tools/benchmark.cpp.o [ 3%] Building CXX object CMakeFiles/arch_generic.dir/src/search/stage1_2.cpp.o [ 3%] Building CXX object CMakeFiles/arch_neon.dir/src/dp/swipe/swipe_wrapper.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_NEON -DARCH_ID=4 -D__ARM_NEON -D__aarch64__ -DEigen=Eigen_NEON -MD -MT CMakeFiles/arch_neon.dir/src/tools/benchmark.cpp.o -MF CMakeFiles/arch_neon.dir/src/tools/benchmark.cpp.o.d -o CMakeFiles/arch_neon.dir/src/tools/benchmark.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/tools/benchmark.cpp /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/search/stage1_2.cpp.o -MF CMakeFiles/arch_generic.dir/src/search/stage1_2.cpp.o.d -o CMakeFiles/arch_generic.dir/src/search/stage1_2.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/search/stage1_2.cpp /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/tools/benchmark.cpp.o -MF CMakeFiles/arch_generic.dir/src/tools/benchmark.cpp.o.d -o CMakeFiles/arch_generic.dir/src/tools/benchmark.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/tools/benchmark.cpp /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_NEON -DARCH_ID=4 -D__ARM_NEON -D__aarch64__ -DEigen=Eigen_NEON -MD -MT CMakeFiles/arch_neon.dir/src/dp/swipe/swipe_wrapper.cpp.o -MF CMakeFiles/arch_neon.dir/src/dp/swipe/swipe_wrapper.cpp.o.d -o CMakeFiles/arch_neon.dir/src/dp/swipe/swipe_wrapper.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp [ 4%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/swipe/swipe_wrapper.cpp.o [ 3%] Building CXX object CMakeFiles/arch_generic.dir/src/masking/tantan.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/masking/tantan.cpp.o -MF CMakeFiles/arch_generic.dir/src/masking/tantan.cpp.o.d -o CMakeFiles/arch_generic.dir/src/masking/tantan.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/masking/tantan.cpp /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/swipe/swipe_wrapper.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/swipe/swipe_wrapper.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/swipe/swipe_wrapper.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp [ 5%] Building CXX object CMakeFiles/arch_neon.dir/src/masking/tantan.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_NEON -DARCH_ID=4 -D__ARM_NEON -D__aarch64__ -DEigen=Eigen_NEON -MD -MT CMakeFiles/arch_neon.dir/src/masking/tantan.cpp.o -MF CMakeFiles/arch_neon.dir/src/masking/tantan.cpp.o.d -o CMakeFiles/arch_neon.dir/src/masking/tantan.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/masking/tantan.cpp [ 6%] Building CXX object CMakeFiles/arch_neon.dir/src/dp/ungapped_simd.cpp.o [ 6%] Building CXX object CMakeFiles/arch_neon.dir/src/dp/scan_diags.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_NEON -DARCH_ID=4 -D__ARM_NEON -D__aarch64__ -DEigen=Eigen_NEON -MD -MT CMakeFiles/arch_neon.dir/src/dp/ungapped_simd.cpp.o -MF CMakeFiles/arch_neon.dir/src/dp/ungapped_simd.cpp.o.d -o CMakeFiles/arch_neon.dir/src/dp/ungapped_simd.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/ungapped_simd.cpp /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_NEON -DARCH_ID=4 -D__ARM_NEON -D__aarch64__ -DEigen=Eigen_NEON -MD -MT CMakeFiles/arch_neon.dir/src/dp/scan_diags.cpp.o -MF CMakeFiles/arch_neon.dir/src/dp/scan_diags.cpp.o.d -o CMakeFiles/arch_neon.dir/src/dp/scan_diags.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/scan_diags.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/cell_update.h:23, from /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:34: /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h: In instantiation of ‘void set_channel(ForwardCell&, int, typename ARCH_GENERIC::ScoreTraits::Score) [with Sv = int; typename ARCH_GENERIC::ScoreTraits::Score = int]’: /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:76:15: required from ‘void DP::Swipe::ARCH_GENERIC::Matrix::set_zero(int) [with Sv = ForwardCell]’ 76 | set_channel(hgap_[i], c, z); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:232:17: required from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, ForwardCell, VectorIdMask >]’ 232 | dp.set_zero(c); | ~~~~~~~~~~~^~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:141:61: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::dispatch_swipe(It, It, std::atomic*, Cbs, std::vector&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, ForwardCell, VectorIdMask >]’ 141 | return ::DP::Swipe::DISPATCH_ARCH::swipe(begin, end, next, composition_bias, overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:154:44: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::dispatch_swipe(It, It, std::atomic*, std::vector&, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, ForwardCell, VectorIdMask >]’ 154 | return dispatch_swipe(begin, end, next, NoCBS(), overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:177:38: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::dispatch_swipe(It, It, std::atomic*, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ 177 | return dispatch_swipe(begin, end, next, overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:277:32: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::swipe_threads(It, It, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ 277 | return dispatch_swipe(begin, end, &next, overflow, round, bin, p); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:341:35: required from ‘std::pair, std::vector > DP::BandedSwipe::ARCH_GENERIC::swipe_bin(unsigned int, It, It, int, DP::Params&) [with It = __gnu_cxx::__normal_iterator >]’ 341 | out = swipe_threads(begin, end, overflow, round, bin, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:397:21: required from here 397 | auto r = swipe_bin(bin, dp_targets[bin].begin(), dp_targets[bin].end(), 1, params); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h:100:21: warning: casting ‘ForwardCell’ to ‘int&’ does not use ‘ForwardCell::operator int32_t() const’ [-Wcast-user-defined] 100 | set_channel((Sv&)v, i, x); | ^~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h: In instantiation of ‘void set_channel(BackwardCell&, int, typename ARCH_GENERIC::ScoreTraits::Score) [with Sv = int; typename ARCH_GENERIC::ScoreTraits::Score = int]’: /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:76:15: required from ‘void DP::Swipe::ARCH_GENERIC::Matrix::set_zero(int) [with Sv = BackwardCell]’ 76 | set_channel(hgap_[i], c, z); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:232:17: required from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, BackwardCell, VectorIdMask >]’ 232 | dp.set_zero(c); | ~~~~~~~~~~~^~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:141:61: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::dispatch_swipe(It, It, std::atomic*, Cbs, std::vector&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, BackwardCell, VectorIdMask >]’ 141 | return ::DP::Swipe::DISPATCH_ARCH::swipe(begin, end, next, composition_bias, overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:154:44: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::dispatch_swipe(It, It, std::atomic*, std::vector&, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, BackwardCell, VectorIdMask >]’ 154 | return dispatch_swipe(begin, end, next, NoCBS(), overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:187:38: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::dispatch_swipe(It, It, std::atomic*, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ 187 | return dispatch_swipe(begin, end, next, overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:277:32: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::swipe_threads(It, It, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ 277 | return dispatch_swipe(begin, end, &next, overflow, round, bin, p); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:341:35: required from ‘std::pair, std::vector > DP::BandedSwipe::ARCH_GENERIC::swipe_bin(unsigned int, It, It, int, DP::Params&) [with It = __gnu_cxx::__normal_iterator >]’ 341 | out = swipe_threads(begin, end, overflow, round, bin, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:397:21: required from here 397 | auto r = swipe_bin(bin, dp_targets[bin].begin(), dp_targets[bin].end(), 1, params); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h:158:21: warning: casting ‘BackwardCell’ to ‘int&’ does not use ‘BackwardCell::operator int32_t() const’ [-Wcast-user-defined] 158 | set_channel((Sv&)v, i, x); | ^~~~~~ [ 6%] Building CXX object CMakeFiles/arch_neon.dir/src/dp/pfscan/pfscan.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_NEON -DARCH_ID=4 -D__ARM_NEON -D__aarch64__ -DEigen=Eigen_NEON -MD -MT CMakeFiles/arch_neon.dir/src/dp/pfscan/pfscan.cpp.o -MF CMakeFiles/arch_neon.dir/src/dp/pfscan/pfscan.cpp.o.d -o CMakeFiles/arch_neon.dir/src/dp/pfscan/pfscan.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/pfscan/pfscan.cpp [ 7%] Building CXX object CMakeFiles/arch_neon.dir/src/dp/swipe/anchored_wrapper.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_NEON -DARCH_ID=4 -D__ARM_NEON -D__aarch64__ -DEigen=Eigen_NEON -MD -MT CMakeFiles/arch_neon.dir/src/dp/swipe/anchored_wrapper.cpp.o -MF CMakeFiles/arch_neon.dir/src/dp/swipe/anchored_wrapper.cpp.o.d -o CMakeFiles/arch_neon.dir/src/dp/swipe/anchored_wrapper.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/anchored_wrapper.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/cell_update.h:23, from /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:34: /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h: In instantiation of ‘void set_channel(ForwardCell&, int, typename ARCH_NEON::ScoreTraits::Score) [with Sv = int; typename ARCH_NEON::ScoreTraits::Score = int]’: /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:76:15: required from ‘void DP::Swipe::ARCH_NEON::Matrix::set_zero(int) [with Sv = ForwardCell]’ 76 | set_channel(hgap_[i], c, z); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:232:17: required from ‘std::__cxx11::list DP::Swipe::ARCH_NEON::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, ForwardCell, VectorIdMask >]’ 232 | dp.set_zero(c); | ~~~~~~~~~~~^~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:141:61: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::dispatch_swipe(It, It, std::atomic*, Cbs, std::vector&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, ForwardCell, VectorIdMask >]’ 141 | return ::DP::Swipe::DISPATCH_ARCH::swipe(begin, end, next, composition_bias, overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:154:44: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::dispatch_swipe(It, It, std::atomic*, std::vector&, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, ForwardCell, VectorIdMask >]’ 154 | return dispatch_swipe(begin, end, next, NoCBS(), overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:177:38: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::dispatch_swipe(It, It, std::atomic*, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ 177 | return dispatch_swipe(begin, end, next, overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:277:32: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::swipe_threads(It, It, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ 277 | return dispatch_swipe(begin, end, &next, overflow, round, bin, p); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:341:35: required from ‘std::pair, std::vector > DP::BandedSwipe::ARCH_NEON::swipe_bin(unsigned int, It, It, int, DP::Params&) [with It = __gnu_cxx::__normal_iterator >]’ 341 | out = swipe_threads(begin, end, overflow, round, bin, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:397:21: required from here 397 | auto r = swipe_bin(bin, dp_targets[bin].begin(), dp_targets[bin].end(), 1, params); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h:100:21: warning: casting ‘ForwardCell’ to ‘int&’ does not use ‘ForwardCell::operator int32_t() const’ [-Wcast-user-defined] 100 | set_channel((Sv&)v, i, x); | ^~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h: In instantiation of ‘void set_channel(BackwardCell&, int, typename ARCH_NEON::ScoreTraits::Score) [with Sv = int; typename ARCH_NEON::ScoreTraits::Score = int]’: /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:76:15: required from ‘void DP::Swipe::ARCH_NEON::Matrix::set_zero(int) [with Sv = BackwardCell]’ 76 | set_channel(hgap_[i], c, z); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:232:17: required from ‘std::__cxx11::list DP::Swipe::ARCH_NEON::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, BackwardCell, VectorIdMask >]’ 232 | dp.set_zero(c); | ~~~~~~~~~~~^~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:141:61: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::dispatch_swipe(It, It, std::atomic*, Cbs, std::vector&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, BackwardCell, VectorIdMask >]’ 141 | return ::DP::Swipe::DISPATCH_ARCH::swipe(begin, end, next, composition_bias, overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:154:44: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::dispatch_swipe(It, It, std::atomic*, std::vector&, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, BackwardCell, VectorIdMask >]’ 154 | return dispatch_swipe(begin, end, next, NoCBS(), overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:187:38: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::dispatch_swipe(It, It, std::atomic*, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ 187 | return dispatch_swipe(begin, end, next, overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:277:32: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::swipe_threads(It, It, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ 277 | return dispatch_swipe(begin, end, &next, overflow, round, bin, p); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:341:35: required from ‘std::pair, std::vector > DP::BandedSwipe::ARCH_NEON::swipe_bin(unsigned int, It, It, int, DP::Params&) [with It = __gnu_cxx::__normal_iterator >]’ 341 | out = swipe_threads(begin, end, overflow, round, bin, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:397:21: required from here 397 | auto r = swipe_bin(bin, dp_targets[bin].begin(), dp_targets[bin].end(), 1, params); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h:158:21: warning: casting ‘BackwardCell’ to ‘int&’ does not use ‘BackwardCell::operator int32_t() const’ [-Wcast-user-defined] 158 | set_channel((Sv&)v, i, x); | ^~~~~~ [ 8%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/scan_diags.cpp [ 8%] Building CXX object CMakeFiles/arch_neon.dir/src/dp/score_profile.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_NEON -DARCH_ID=4 -D__ARM_NEON -D__aarch64__ -DEigen=Eigen_NEON -MD -MT CMakeFiles/arch_neon.dir/src/dp/score_profile.cpp.o -MF CMakeFiles/arch_neon.dir/src/dp/score_profile.cpp.o.d -o CMakeFiles/arch_neon.dir/src/dp/score_profile.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/score_profile.cpp [ 8%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/ungapped_simd.cpp [ 9%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/pfscan/pfscan.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/pfscan/pfscan.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/pfscan/pfscan.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/pfscan/pfscan.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/pfscan/pfscan.cpp [ 9%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/anchored_wrapper.cpp [ 10%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/score_profile.cpp In file included from /usr/include/c++/14/list:62, from /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:22: In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In file included from /usr/include/c++/14/list:62, from /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:22: In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_NEON::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_NEON::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_NEON::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_NEON::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_NEON::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_NEON::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_NEON::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_NEON::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_NEON::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' [ 10%] Built target arch_generic make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' [ 10%] Built target arch_neon make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/depend make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' cd 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-ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/run/main.cpp.o -MF CMakeFiles/diamond.dir/src/run/main.cpp.o.d -o CMakeFiles/diamond.dir/src/run/main.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/run/main.cpp [ 12%] Building CXX object CMakeFiles/diamond.dir/src/basic/config.cpp.o [ 12%] Building CXX object CMakeFiles/diamond.dir/src/stats/score_matrix.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/basic/config.cpp.o -MF CMakeFiles/diamond.dir/src/basic/config.cpp.o.d -o CMakeFiles/diamond.dir/src/basic/config.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/basic/config.cpp /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/stats/score_matrix.cpp.o -MF CMakeFiles/diamond.dir/src/stats/score_matrix.cpp.o.d -o CMakeFiles/diamond.dir/src/stats/score_matrix.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/stats/score_matrix.cpp [ 13%] Building CXX object CMakeFiles/diamond.dir/src/data/queries.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time 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-Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/data/seed_histogram.cpp.o -MF CMakeFiles/diamond.dir/src/data/seed_histogram.cpp.o.d -o CMakeFiles/diamond.dir/src/data/seed_histogram.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/data/seed_histogram.cpp [ 14%] Building CXX object CMakeFiles/diamond.dir/src/output/daa/daa_record.cpp.o [ 14%] Building CXX object CMakeFiles/diamond.dir/src/util/command_line_parser.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra 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-Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/njn_ioutil.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/njn_ioutil.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/njn_ioutil.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_ioutil.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:39, from /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.cpp:37: /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprob.hpp:110:37: warning: ‘virtual Njn::DynProgProb& Njn::DynProgProb::operator=(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 110 | virtual inline DynProgProb &operator= (const DynProgProb &dynProgProb_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:90:40: note: by ‘virtual Njn::DynProgProbLim& Njn::DynProgProbLim::operator=(const Njn::DynProgProbLim&)’ 90 | virtual inline DynProgProbLim &operator= (const DynProgProbLim &dynProgProbLim_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprob.hpp:124:22: warning: ‘virtual void Njn::DynProgProb::copy(size_t, const double* const*, size_t, long int, long int, long int, long int (*)(long int, size_t), size_t, const double*)’ was hidden [-Woverloaded-virtual=] 124 | virtual void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprob.hpp:116:29: warning: ‘virtual void Njn::DynProgProb::copy(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 116 | virtual inline void copy (const DynProgProb &dynProgProb_) | ^~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ [ 58%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstat.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstat.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstat.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstat.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_localmaxstat.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:39, from /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_localmaxstat.cpp:39: /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprob.hpp:110:37: warning: ‘virtual Njn::DynProgProb& Njn::DynProgProb::operator=(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 110 | virtual inline DynProgProb &operator= (const DynProgProb &dynProgProb_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:90:40: note: by ‘virtual Njn::DynProgProbLim& Njn::DynProgProbLim::operator=(const Njn::DynProgProbLim&)’ 90 | virtual inline DynProgProbLim &operator= (const DynProgProbLim &dynProgProbLim_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprob.hpp:124:22: warning: ‘virtual void Njn::DynProgProb::copy(size_t, const double* const*, size_t, long int, long int, long int, long int (*)(long int, size_t), size_t, const double*)’ was hidden [-Woverloaded-virtual=] 124 | virtual void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprob.hpp:116:29: warning: ‘virtual void Njn::DynProgProb::copy(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 116 | virtual inline void copy (const DynProgProb &dynProgProb_) | ^~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 58%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatmatrix.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatmatrix.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatmatrix.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatmatrix.cpp.o -c 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/build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_localmaxstatutil.cpp [ 59%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_random.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/njn_random.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/njn_random.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/njn_random.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_random.cpp [ 60%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alignment_evaluer.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alignment_evaluer.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alignment_evaluer.cpp.o -c 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/build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/sls_alp.cpp cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 61%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/sls_alp_data.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:39, from /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_localmaxstatutil.cpp:39: /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprob.hpp:110:37: warning: ‘virtual Njn::DynProgProb& Njn::DynProgProb::operator=(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 110 | virtual inline DynProgProb &operator= (const DynProgProb &dynProgProb_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:90:40: note: by ‘virtual Njn::DynProgProbLim& Njn::DynProgProbLim::operator=(const Njn::DynProgProbLim&)’ 90 | virtual inline DynProgProbLim &operator= (const DynProgProbLim &dynProgProbLim_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprob.hpp:124:22: warning: ‘virtual void Njn::DynProgProb::copy(size_t, const double* const*, size_t, long int, long int, long int, long int (*)(long int, size_t), size_t, const double*)’ was hidden [-Woverloaded-virtual=] 124 | virtual void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprob.hpp:116:29: warning: ‘virtual void Njn::DynProgProb::copy(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 116 | virtual inline void copy (const DynProgProb &dynProgProb_) | ^~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ [ 62%] Building CXX object 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64%] Building CXX object CMakeFiles/diamond.dir/src/align/global_ranking/extend.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/align/global_ranking/extend.cpp.o -MF CMakeFiles/diamond.dir/src/align/global_ranking/extend.cpp.o.d -o CMakeFiles/diamond.dir/src/align/global_ranking/extend.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/align/global_ranking/extend.cpp [ 65%] Building 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-mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/align/short.cpp.o -MF CMakeFiles/diamond.dir/src/align/short.cpp.o.d -o CMakeFiles/diamond.dir/src/align/short.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/align/short.cpp [ 99%] Building CXX object CMakeFiles/diamond.dir/src/tools/tsv.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra 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CMakeFiles/arch_generic.dir/src/dp/pfscan/pfscan.cpp.o CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o CMakeFiles/arch_neon.dir/src/dp/swipe/banded_3frame_swipe.cpp.o CMakeFiles/arch_neon.dir/src/search/stage1_2.cpp.o CMakeFiles/arch_neon.dir/src/tools/benchmark.cpp.o CMakeFiles/arch_neon.dir/src/dp/swipe/swipe_wrapper.cpp.o CMakeFiles/arch_neon.dir/src/masking/tantan.cpp.o CMakeFiles/arch_neon.dir/src/dp/scan_diags.cpp.o CMakeFiles/arch_neon.dir/src/dp/ungapped_simd.cpp.o CMakeFiles/arch_neon.dir/src/dp/pfscan/pfscan.cpp.o CMakeFiles/arch_neon.dir/src/dp/swipe/anchored_wrapper.cpp.o CMakeFiles/arch_neon.dir/src/dp/score_profile.cpp.o -o diamond -lz make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' [100%] Built target diamond make[2]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9' cd debian/tests && PATH=/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games sh diamond-calls + mktemp -d + TESTDIR=/tmp/tmp.J27HjrolZa + diamond blastp --threads 1 --db test/C.faa.diamond --query test/E.faa --out /tmp/tmp.J27HjrolZa/E.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.02s] Algorithm: Double-indexed Building query histograms... [0.039s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.011s] Initializing temporary storage... [0s] Building reference histograms... [0.031s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.015s] Computing hash join... [0.008s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.011s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.02s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.011s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.004s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.005s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.021s] Building query seed array... [0.008s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.011s] Building query seed array... [0.011s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.024s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.029s] Building query seed array... [0.007s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.005s] Building query seed array... [0.009s] Computing hash join... [0.011s] Masking low complexity seeds... [0.006s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.021s] Building query seed array... [0.027s] Computing hash join... [0.003s] Masking low complexity seeds... [0.004s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.011s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.011s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.019s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.024s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.024s] Computing hash join... [0.008s] Masking low complexity seeds... [0.014s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.02s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.009s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.011s] Building query seed array... [0.016s] Computing hash join... [0.018s] Masking low complexity seeds... [0.015s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.006s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.016s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.016s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.017s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.014s] Building query seed array... [0.004s] Computing hash join... [0.008s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.021s] Building query seed array... [0.004s] Computing hash join... [0s] Masking low complexity seeds... [0.001s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0.004s] Masking low complexity seeds... [0.001s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.018s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.014s] Building query seed array... [0.011s] Computing hash join... [0.008s] Masking low complexity seeds... [0.007s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.028s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.019s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.032s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.035s] Computing hash join... [0.008s] Masking low complexity seeds... [0.009s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.024s] Computing hash join... [0.014s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.015s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.014s] Masking low complexity seeds... [0.005s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.02s] Building query seed array... [0.014s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.021s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.011s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.002s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.019s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.005s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.287s] Sorting trace points... [0s] Computing alignments... [0.289s] Deallocating buffers... [0s] Loading trace points... [0s] [0.578s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 5.047s Reported 77 pairwise alignments, 77 HSPs. 72 queries aligned. + diamond blastp --threads 1 --db test/E.faa.diamond --query test/C.faa --out /tmp/tmp.J27HjrolZa/C.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.023s] Algorithm: Double-indexed Building query histograms... [0.022s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.011s] Initializing temporary storage... [0s] Building reference histograms... [0.017s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.02s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.025s] Building query seed array... [0.024s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.028s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.012s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.024s] Computing hash join... [0.014s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.011s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.019s] Masking low complexity seeds... [0.012s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.015s] Computing hash join... [0.009s] Masking low complexity seeds... [0.01s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.02s] Computing hash join... [0.014s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.004s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.003s] Building query seed array... [0.008s] Computing hash join... [0.002s] Masking low complexity seeds... [0.001s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.01s] Building query seed array... [0.025s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.011s] Computing hash join... [0.001s] Masking low complexity seeds... [0.006s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.006s] Computing hash join... [0.003s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.004s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.004s] Building query seed array... [0.009s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.008s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.003s] Building query seed array... [0.011s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.024s] Computing hash join... [0.01s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.012s] Computing hash join... [0.01s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.021s] Building query seed array... [0.025s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.005s] Building query seed array... [0.002s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.01s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.026s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.009s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.026s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.012s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.016s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.02s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.025s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.011s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.015s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.033s] Building query seed array... [0.032s] Computing hash join... [0.011s] Masking low complexity seeds... [0.002s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.097s] Sorting trace points... [0s] Computing alignments... [0.075s] Deallocating buffers... [0.004s] Loading trace points... [0s] [0.178s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 4.654s Reported 41 pairwise alignments, 41 HSPs. 15 queries aligned. + diamond blastp --threads 1 --db test/C.faa.diamond --query test/L.faa --out /tmp/tmp.J27HjrolZa/L.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.052s] Algorithm: Double-indexed Building query histograms... [0.014s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.011s] Initializing temporary storage... [0s] Building reference histograms... [0.015s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.01s] Building query seed array... [0.011s] Computing hash join... [0.006s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.017s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.016s] Building query seed array... [0.023s] Computing hash join... [0.01s] Masking low complexity seeds... [0.017s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.016s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.022s] Computing hash join... [0.008s] Masking low complexity seeds... [0.004s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.017s] Building query seed array... [0.018s] Computing hash join... [0.008s] Masking low complexity seeds... [0.007s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.005s] Masking low complexity seeds... [0.007s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.017s] Computing hash join... [0.006s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.014s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.028s] Computing hash join... [0.011s] Masking low complexity seeds... [0.019s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.021s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.021s] Building query seed array... [0.013s] Computing hash join... [0.007s] Masking low complexity seeds... [0.015s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.006s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.013s] Computing hash join... [0.008s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0.009s] Masking low complexity seeds... [0.001s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.012s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.011s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.032s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.012s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.017s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.004s] Building query seed array... [0.011s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.013s] Computing hash join... [0.014s] Masking low complexity seeds... [0.005s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.015s] Computing hash join... [0s] Masking low complexity seeds... [0.003s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.009s] Building query seed array... [0.012s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.014s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.017s] Building query seed array... [0.021s] Computing hash join... [0.008s] Masking low complexity seeds... [0.015s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.018s] Computing hash join... [0.008s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.009s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.017s] Building query seed array... [0.026s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.017s] Computing hash join... [0.014s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.016s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.024s] Building query seed array... [0.011s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0.01s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.009s] Building query seed array... [0.003s] Computing hash join... [0.003s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.011s] Computing hash join... [0s] Masking low complexity seeds... [0.007s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.005s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.009s] Computing hash join... [0.002s] Masking low complexity seeds... [0.011s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.008s] Building query seed array... [0.018s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.284s] Sorting trace points... [0s] Computing alignments... [0.152s] Deallocating buffers... [0.006s] Loading trace points... [0s] [0.444s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 4.909s Reported 64 pairwise alignments, 64 HSPs. 33 queries aligned. + diamond blastp --threads 1 --db test/L.faa.diamond --query test/C.faa --out /tmp/tmp.J27HjrolZa/C.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.04s] Algorithm: Double-indexed Building query histograms... [0.017s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.001s] Initializing temporary storage... [0s] Building reference histograms... [0.012s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.01s] Building query seed array... [0.011s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.015s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.003s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.005s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.009s] Computing hash join... [0s] Masking low complexity seeds... [0.001s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.009s] Masking low complexity seeds... [0s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.01s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.021s] Building query seed array... [0.005s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.016s] Building query seed array... [0.026s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.01s] Building query seed array... [0.015s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.004s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.016s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.011s] Building query seed array... [0.028s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.017s] Building query seed array... [0.005s] Computing hash join... [0.001s] Masking low complexity seeds... [0.006s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.015s] Building query seed array... [0.011s] Computing hash join... [0.008s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.003s] Computing hash join... [0.002s] Masking low complexity seeds... [0.005s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.009s] Building query seed array... [0.004s] Computing hash join... [0.01s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.02s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.016s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.027s] Computing hash join... [0.008s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.012s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.028s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.012s] Computing hash join... [0.001s] Masking low complexity seeds... [0.013s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.005s] Building query seed array... [0.005s] Computing hash join... [0.002s] Masking low complexity seeds... [0.002s] Searching alignments... [0.003s] Deallocating memory... [0.001s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.308s] Sorting trace points... [0s] Computing alignments... [0.28s] Deallocating buffers... [0.007s] Loading trace points... [0s] [0.597s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 5.313s Reported 133 pairwise alignments, 133 HSPs. 109 queries aligned. + diamond blastp --threads 1 --db test/C.faa.diamond --query test/M.faa --out /tmp/tmp.J27HjrolZa/M.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.039s] Algorithm: Double-indexed Building query histograms... [0.031s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.011s] Initializing temporary storage... [0s] Building reference histograms... [0.031s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.025s] Building query seed array... [0.025s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.006s] Building query seed array... [0.015s] Computing hash join... [0.014s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.005s] Building query seed array... [0.007s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.01s] Building query seed array... [0.008s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.016s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.013s] Computing hash join... [0.01s] Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.015s] Computing hash join... [0.003s] Masking low complexity seeds... [0.002s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.02s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.016s] Computing hash join... [0.014s] Masking low complexity seeds... [0.008s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.02s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.016s] Computing hash join... [0.003s] Masking low complexity seeds... [0.004s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.041s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.022s] Computing hash join... [0.003s] Masking low complexity seeds... [0.005s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.01s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0.002s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.004s] Building query seed array... [0.01s] Computing hash join... [0.003s] Masking low complexity seeds... [0.002s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.003s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.007s] Computing hash join... [0.008s] Masking low complexity seeds... [0.007s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.014s] Computing hash join... [0s] Masking low complexity seeds... [0.007s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.011s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.005s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.004s] Building query seed array... [0.009s] Computing hash join... [0.014s] Masking low complexity seeds... [0.002s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.01s] Building query seed array... [0.011s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.008s] Computing hash join... [0.003s] Masking low complexity seeds... [0.001s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.004s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.009s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.015s] Computing hash join... [0s] Masking low complexity seeds... [0.001s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.005s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0.002s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.218s] Sorting trace points... [0s] Computing alignments... [0.152s] Deallocating buffers... [0s] Loading trace points... [0s] [0.373s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 4.845s Reported 62 pairwise alignments, 62 HSPs. 33 queries aligned. + diamond blastp --threads 1 --db test/M.faa.diamond --query test/C.faa --out /tmp/tmp.J27HjrolZa/C.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.049s] Algorithm: Double-indexed Building query histograms... [0.036s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.011s] Initializing temporary storage... [0s] Building reference histograms... [0.04s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.016s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.005s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.01s] Computing hash join... [0.003s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.008s] Computing hash join... [0s] Masking low complexity seeds... [0.001s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.008s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.017s] Computing hash join... [0.007s] Masking low complexity seeds... [0.01s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0.002s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.01s] Computing hash join... [0.002s] Masking low complexity seeds... [0.01s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.004s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.006s] Building query seed array... [0.011s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.002s] Computing hash join... [0.003s] Masking low complexity seeds... [0.008s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.009s] Building query seed array... [0.004s] Computing hash join... [0.004s] Masking low complexity seeds... [0.001s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.017s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.006s] Computing hash join... [0.007s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.004s] Computing hash join... [0.002s] Masking low complexity seeds... [0.001s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.006s] Building query seed array... [0.006s] Computing hash join... [0s] Masking low complexity seeds... [0.002s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0.001s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.012s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.004s] Building query seed array... [0.018s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.004s] Building query seed array... [0.018s] Computing hash join... [0.005s] Masking low complexity seeds... [0.001s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.015s] Computing hash join... [0.004s] Masking low complexity seeds... [0.003s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0.007s] Searching alignments... [0.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.015s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0.004s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.021s] Building query seed array... [0.023s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.005s] Building query seed array... [0.01s] Computing hash join... [0.004s] Masking low complexity seeds... [0.006s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.015s] Computing hash join... [0.003s] Masking low complexity seeds... [0.006s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.017s] Building query seed array... [0.004s] Computing hash join... [0.002s] Masking low complexity seeds... [0.009s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.009s] Building query seed array... [0.004s] Computing hash join... [0.009s] Masking low complexity seeds... [0.013s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.004s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.008s] Computing hash join... [0.003s] Masking low complexity seeds... [0.002s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0.01s] Masking low complexity seeds... [0.006s] Searching alignments... [0.003s] Deallocating memory... [0.001s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.214s] Sorting trace points... [0s] Computing alignments... [0.175s] Deallocating buffers... [0s] Loading trace points... [0s] [0.391s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 3.844s Reported 131 pairwise alignments, 131 HSPs. 109 queries aligned. + diamond blastp --ignore-warnings --threads 1 --db test/C.faa.diamond --query test/C2.faa --out /tmp/tmp.J27HjrolZa/C2.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.002s] Algorithm: Double-indexed Building query histograms... [0.002s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.003s] Initializing temporary storage... [0.002s] Building reference histograms... [0.015s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.006s] Building query seed array... [0.005s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.015s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.015s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.016s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.006s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.024s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.011s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.002s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.015s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.031s] Computing hash join... [0.016s] Masking low complexity seeds... [0.007s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.018s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.02s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.024s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.02s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.01s] Building query seed array... [0.012s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.035s] Sorting trace points... [0s] Computing alignments... [0.015s] Deallocating buffers... [0.007s] Loading trace points... [0s] [0.059s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 5.082s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/C.faa --out /tmp/tmp.J27HjrolZa/C.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0.004s] Masking queries... [0.047s] Algorithm: Double-indexed Building query histograms... [0.031s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.015s] Initializing temporary storage... [0s] Building reference histograms... [0.019s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.035s] Building query seed array... [0.008s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.011s] Building query seed array... [0.009s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.014s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.023s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.01s] Building query seed array... [0.031s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.02s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.019s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.015s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.005s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.024s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.009s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.02s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.011s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.023s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.019s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.023s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.004s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.011s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.006s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0.008s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.011s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.011s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.011s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.039s] Sorting trace points... [0s] Computing alignments... [0.015s] Deallocating buffers... [0.007s] Loading trace points... [0s] [0.063s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 3.837s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/E.faa.diamond --query test/L.faa --out /tmp/tmp.J27HjrolZa/L.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.052s] Algorithm: Double-indexed Building query histograms... [0.035s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.003s] Initializing temporary storage... [0s] Building reference histograms... [0.009s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.035s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.02s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.034s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.016s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.036s] Building query seed array... [0.018s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.017s] Computing hash join... [0.006s] Masking low complexity seeds... [0.001s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.01s] Masking low complexity seeds... [0.013s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.035s] Building query seed array... [0.028s] Computing hash join... [0.005s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.023s] Computing hash join... [0.019s] Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.035s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.035s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.022s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0.006s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.006s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.031s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.031s] Computing hash join... [0.014s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.026s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.039s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.011s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.024s] Building query seed array... [0.036s] Computing hash join... [0s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.024s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.019s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.02s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0.005s] Masking low complexity seeds... [0.007s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.011s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.071s] Sorting trace points... [0s] Computing alignments... [0.36s] Deallocating buffers... [0s] Loading trace points... [0s] [0.434s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 4.153s Reported 489 pairwise alignments, 489 HSPs. 32 queries aligned. + diamond blastp --threads 1 --db test/L.faa.diamond --query test/E.faa --out /tmp/tmp.J27HjrolZa/E.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.022s] Algorithm: Double-indexed Building query histograms... [0.009s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.003s] Initializing temporary storage... [0s] Building reference histograms... [0.005s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.002s] Computing hash join... [0.02s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.008s] Computing hash join... [0s] Masking low complexity seeds... [0.016s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.016s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.004s] Building query seed array... [0.016s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.017s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.02s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.01s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.011s] Building query seed array... [0.011s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.003s] Building query seed array... [0.002s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.021s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.019s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.02s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.027s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.035s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.025s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.024s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.039s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.028s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.016s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0.007s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.006s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.008s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.013s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.183s] Sorting trace points... [0s] Computing alignments... [0.567s] Deallocating buffers... [0s] Loading trace points... [0s] [0.752s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 5.797s Reported 1173 pairwise alignments, 1173 HSPs. 72 queries aligned. + diamond blastp --threads 1 --db test/E.faa.diamond --query test/M.faa --out /tmp/tmp.J27HjrolZa/M.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.042s] Algorithm: Double-indexed Building query histograms... [0.023s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.01s] Initializing temporary storage... [0s] Building reference histograms... [0.036s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.01s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.016s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.016s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.004s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.02s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.025s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.008s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.017s] Building query seed array... [0.022s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.016s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.01s] Computing hash join... [0.007s] Masking low complexity seeds... [0.002s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.017s] Building query seed array... [0.04s] Computing hash join... [0.004s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.016s] Computing hash join... [0.01s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.009s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.017s] Computing hash join... [0.014s] Masking low complexity seeds... [0.007s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.004s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.019s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.02s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.02s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.018s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.015s] Computing hash join... [0.003s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.011s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0.019s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.011s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.016s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.016s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.011s] Computing hash join... [0.003s] Masking low complexity seeds... [0.007s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.267s] Sorting trace points... [0s] Computing alignments... [0.543s] Deallocating buffers... [0.007s] Loading trace points... [0s] [0.819s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 5.675s Reported 489 pairwise alignments, 489 HSPs. 32 queries aligned. + diamond blastp --threads 1 --db test/M.faa.diamond --query test/E.faa --out /tmp/tmp.J27HjrolZa/E.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.02s] Algorithm: Double-indexed Building query histograms... [0.035s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.007s] Initializing temporary storage... [0s] Building reference histograms... [0.027s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.008s] Masking low complexity seeds... [0.008s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.02s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.02s] Computing hash join... [0.015s] Masking low complexity seeds... [0.004s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0.007s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.004s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.018s] Computing hash join... [0.009s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.02s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.009s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.01s] Computing hash join... [0s] Masking low complexity seeds... [0.008s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.019s] Computing hash join... [0.008s] Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.011s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.009s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.027s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.011s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.02s] Computing hash join... [0.006s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.017s] Building query seed array... [0.022s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0.007s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.023s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.024s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.03s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.004s] Masking low complexity seeds... [0.007s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.031s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.038s] Building query seed array... [0.008s] Computing hash join... [0.016s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.011s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.004s] Building query seed array... [0.004s] Computing hash join... [0.004s] Masking low complexity seeds... [0.008s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.017s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.01s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.004s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.011s] Building query seed array... [0.025s] Computing hash join... [0.006s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.02s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.028s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.02s] Computing hash join... [0.008s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.002s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.017s] Building query seed array... [0.018s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.02s] Building query seed array... [0.02s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.016s] Building query seed array... [0.019s] Computing hash join... [0.008s] Masking low complexity seeds... [0.015s] Searching alignments... [0.009s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.334s] Sorting trace points... [0s] Computing alignments... [0.611s] Deallocating buffers... [0s] Loading trace points... [0s] [0.947s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 5.214s Reported 1173 pairwise alignments, 1173 HSPs. 72 queries aligned. + diamond blastp --ignore-warnings --threads 1 --db test/E.faa.diamond --query test/C2.faa --out /tmp/tmp.J27HjrolZa/C2.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0s] Algorithm: Double-indexed Building query histograms... [0.018s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.014s] Initializing temporary storage... [0s] Building reference histograms... [0.035s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.017s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.018s] Building query seed array... [0.015s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.007s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.015s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.005s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.011s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.004s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.006s] Building query seed array... [0.009s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.02s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.011s] Building query seed array... [0.011s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.018s] Building query seed array... [0.014s] Computing hash join... [0.009s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.008s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.004s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.018s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.007s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.026s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.004s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.018s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.024s] Building query seed array... [0.022s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.019s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.023s] Computing hash join... [0.005s] Masking low complexity seeds... [0.014s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.015s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.027s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.025s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.013s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.031s] Sorting trace points... [0s] Computing alignments... [0.011s] Deallocating buffers... [0.003s] Loading trace points... [0s] [0.047s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 5.126s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/E.faa --out /tmp/tmp.J27HjrolZa/E.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.026s] Algorithm: Double-indexed Building query histograms... [0.043s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.003s] Initializing temporary storage... [0s] Building reference histograms... [0.031s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.01s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.018s] Building query seed array... [0.008s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.012s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.011s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.002s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.011s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.018s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.015s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.015s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.016s] Building query seed array... [0.013s] Computing hash join... [0.001s] Masking low complexity seeds... [0.001s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.008s] Building query seed array... [0.019s] Computing hash join... [0.008s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.003s] Computing hash join... [0.005s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.011s] Building query seed array... [0.007s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.024s] Computing hash join... [0s] Masking low complexity seeds... [0.001s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.02s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.007s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.028s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.009s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.003s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.018s] Computing hash join... [0.001s] Masking low complexity seeds... [0.004s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.026s] Computing hash join... [0.008s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.011s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.035s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.005s] Building query seed array... [0.008s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.015s] Computing hash join... [0.019s] Masking low complexity seeds... [0.003s] Searching alignments... [0.021s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.034s] Sorting trace points... [0s] Computing alignments... [0.015s] Deallocating buffers... [0.007s] Loading trace points... [0s] [0.059s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 4.743s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/L.faa.diamond --query test/M.faa --out /tmp/tmp.J27HjrolZa/M.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0.004s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.042s] Algorithm: Double-indexed Building query histograms... [0.031s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.011s] Initializing temporary storage... [0s] Building reference histograms... [0.035s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.024s] Computing hash join... [0.01s] Masking low complexity seeds... [0.012s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.021s] Computing hash join... [0.014s] Masking low complexity seeds... [0.019s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.014s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.02s] Building query seed array... [0.022s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.012s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.022s] Computing hash join... [0.013s] Masking low complexity seeds... [0.008s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.014s] Building query seed array... [0.016s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.016s] Building query seed array... [0.02s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.021s] Building query seed array... [0.022s] Computing hash join... [0.01s] Masking low complexity seeds... [0.009s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.016s] Building query seed array... [0.02s] Computing hash join... [0.008s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.024s] Building query seed array... [0.019s] Computing hash join... [0.008s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.017s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.02s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.004s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.015s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.035s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.032s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.007s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.008s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.016s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.015s] Computing hash join... [0.008s] Masking low complexity seeds... [0.01s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.015s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.011s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0.001s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.005s] Building query seed array... [0.017s] Computing hash join... [0.003s] Masking low complexity seeds... [0.004s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.006s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.017s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.016s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.008s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.02s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.003s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.004s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.018s] Building query seed array... [0.012s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.005s] Building query seed array... [0.014s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.016s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.02s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.031s] Computing hash join... [0.004s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.005s] Building query seed array... [0.005s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.02s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.024s] Building query seed array... [0.03s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.283s] Sorting trace points... [0s] Computing alignments... [0.241s] Deallocating buffers... [0s] Loading trace points... [0s] [0.525s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 5.149s Reported 390 pairwise alignments, 390 HSPs. 39 queries aligned. + diamond blastp --threads 1 --db test/M.faa.diamond --query test/L.faa --out /tmp/tmp.J27HjrolZa/L.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.042s] Algorithm: Double-indexed Building query histograms... [0.031s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.007s] Initializing temporary storage... [0s] Building reference histograms... [0.031s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.015s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.016s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.004s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.016s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.016s] Computing hash join... [0.007s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0.008s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.024s] Building query seed array... [0.02s] Computing hash join... [0.006s] Masking low complexity seeds... [0.008s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.018s] Computing hash join... [0.008s] Masking low complexity seeds... [0.014s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.02s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.02s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.004s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.004s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.012s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0.002s] Masking low complexity seeds... [0.007s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.005s] Building query seed array... [0.019s] Computing hash join... [0.01s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0.005s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.011s] Computing hash join... [0.007s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.015s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.005s] Building query seed array... [0.018s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.016s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.016s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.007s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.02s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.02s] Building query seed array... [0.007s] Computing hash join... [0.011s] Masking low complexity seeds... [0.004s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.007s] Computing hash join... [0.008s] Masking low complexity seeds... [0.003s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.007s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.011s] Computing hash join... [0.003s] Masking low complexity seeds... [0.004s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.011s] Building query seed array... [0.012s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.018s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.02s] Computing hash join... [0.015s] Masking low complexity seeds... [0.013s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.01s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.004s] Masking low complexity seeds... [0.007s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.009s] Computing hash join... [0.004s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.02s] Building query seed array... [0.016s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.02s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.016s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.009s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.023s] Computing hash join... [0s] Masking low complexity seeds... [0.01s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.032s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.02s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.007s] Searching alignments... [0.025s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.02s] Computing hash join... [0.014s] Masking low complexity seeds... [0.004s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.016s] Building query seed array... [0.016s] Computing hash join... [0.001s] Masking low complexity seeds... [0.005s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.02s] Building query seed array... [0.027s] Computing hash join... [0.012s] Masking low complexity seeds... [0.015s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.02s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.021s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.024s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.016s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.02s] Building query seed array... [0.02s] Computing hash join... [0.015s] Masking low complexity seeds... [0.008s] Searching alignments... [0.013s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.292s] Sorting trace points... [0s] Computing alignments... [0.229s] Deallocating buffers... [0s] Loading trace points... [0s] [0.523s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 4.619s Reported 390 pairwise alignments, 390 HSPs. 40 queries aligned. + diamond blastp --ignore-warnings --threads 1 --db test/L.faa.diamond --query test/C2.faa --out /tmp/tmp.J27HjrolZa/C2.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0.001s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.013s] Algorithm: Double-indexed Building query histograms... [0.001s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.001s] Initializing temporary storage... [0s] Building reference histograms... [0.005s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.028s] Building query seed array... [0.016s] Computing hash join... [0.007s] Masking low complexity seeds... [0.012s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.011s] Building query seed array... [0.032s] Computing hash join... [0.015s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.018s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.016s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.02s] Computing hash join... [0.004s] Masking low complexity seeds... [0.012s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.011s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.015s] Computing hash join... [0.004s] Masking low complexity seeds... [0.002s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.011s] Building query seed array... [0.011s] Computing hash join... [0.003s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.032s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.006s] Computing hash join... [0.001s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.003s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.004s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.028s] Building query seed array... [0.033s] Computing hash join... [0.004s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.024s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.022s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.011s] Computing hash join... [0.003s] Masking low complexity seeds... [0.008s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.016s] Building query seed array... [0.015s] Computing hash join... [0.008s] Masking low complexity seeds... [0.012s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.015s] Computing hash join... [0.008s] Masking low complexity seeds... [0.003s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.015s] Computing hash join... [0.004s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.016s] Building query seed array... [0.015s] Computing hash join... [0.004s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.016s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.004s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.021s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.039s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.016s] Building query seed array... [0.015s] Computing hash join... [0.004s] Masking low complexity seeds... [0.003s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.009s] Computing hash join... [0s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.02s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.013s] Computing hash join... [0.006s] Masking low complexity seeds... [0.004s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.004s] Masking low complexity seeds... [0.015s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.016s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.024s] Computing hash join... [0.003s] Masking low complexity seeds... [0.007s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.019s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.003s] Computing hash join... [0.001s] Masking low complexity seeds... [0.003s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.015s] Computing hash join... [0.009s] Masking low complexity seeds... [0.01s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.02s] Building query seed array... [0.004s] Computing hash join... [0s] Masking low complexity seeds... [0.003s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.015s] Computing hash join... [0.004s] Masking low complexity seeds... [0.003s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.016s] Computing hash join... [0.003s] Masking low complexity seeds... [0.007s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.01s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.031s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.016s] Building query seed array... [0.004s] Computing hash join... [0.006s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.01s] Computing hash join... [0s] Masking low complexity seeds... [0.015s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.015s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.008s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.022s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.016s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.025s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.03s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.007s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.01s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.011s] Computing hash join... [0.003s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.018s] Sorting trace points... [0s] Computing alignments... [0.003s] Deallocating buffers... [0s] Loading trace points... [0s] [0.023s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 3.769s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/L.faa --out /tmp/tmp.J27HjrolZa/L.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.037s] Algorithm: Double-indexed Building query histograms... [0.007s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.001s] Initializing temporary storage... [0s] Building reference histograms... [0.001s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.006s] Building query seed array... [0.012s] Computing hash join... [0.006s] Masking low complexity seeds... [0.002s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.008s] Computing hash join... [0.003s] Masking low complexity seeds... [0.004s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.026s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.019s] Computing hash join... [0.004s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.015s] Building query seed array... [0.016s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.016s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.02s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.018s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.003s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.011s] Building query seed array... [0.007s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.007s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.004s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.015s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.009s] Building query seed array... [0.009s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.016s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.009s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.007s] Computing hash join... [0.008s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.008s] Building query seed array... [0.015s] Computing hash join... [0.003s] Masking low complexity seeds... [0.008s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.015s] Computing hash join... [0.003s] Masking low complexity seeds... [0.012s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.016s] Building query seed array... [0.021s] Computing hash join... [0.01s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.019s] Computing hash join... [0.004s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.008s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.003s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.02s] Building query seed array... [0.011s] Computing hash join... [0.004s] Masking low complexity seeds... [0.001s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.031s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.015s] Building query seed array... [0.02s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.016s] Building query seed array... [0.022s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.02s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.018s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.01s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.004s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.016s] Building query seed array... [0.019s] Computing hash join... [0.009s] Masking low complexity seeds... [0.013s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.011s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.01s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.021s] Building query seed array... [0.019s] Computing hash join... [0.004s] Masking low complexity seeds... [0.007s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.017s] Computing hash join... [0.01s] Masking low complexity seeds... [0.004s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.021s] Building query seed array... [0.011s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.02s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.024s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.011s] Building query seed array... [0.016s] Computing hash join... [0.008s] Masking low complexity seeds... [0.008s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.012s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.018s] Computing hash join... [0.005s] Masking low complexity seeds... [0.006s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.015s] Computing hash join... [0s] Masking low complexity seeds... [0.001s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.009s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.038s] Sorting trace points... [0s] Computing alignments... [0.011s] Deallocating buffers... [0.007s] Loading trace points... [0s] [0.059s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 4.005s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --ignore-warnings --threads 1 --db test/M.faa.diamond --query test/C2.faa --out /tmp/tmp.J27HjrolZa/C2.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.008s] Algorithm: Double-indexed Building query histograms... [0.023s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.011s] Initializing temporary storage... [0.001s] Building reference histograms... [0.018s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.004s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.013s] Computing hash join... [0.018s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.016s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.016s] Computing hash join... [0.011s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.02s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0.002s] Searching alignments... [0s] Deallocating memory... [0.001s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.016s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.028s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.004s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.035s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.007s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.011s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.011s] Building query seed array... [0.032s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.009s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.016s] Computing hash join... [0.009s] Masking low complexity seeds... [0.012s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.009s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.041s] Building query seed array... [0.012s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.011s] Computing hash join... [0.001s] Masking low complexity seeds... [0.011s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.013s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.012s] Computing hash join... [0.007s] Masking low complexity seeds... [0.012s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.02s] Computing hash join... [0.008s] Masking low complexity seeds... [0.007s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.02s] Building query seed array... [0.015s] Computing hash join... [0.004s] Masking low complexity seeds... [0.003s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.016s] Computing hash join... [0.003s] Masking low complexity seeds... [0.004s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.012s] Computing hash join... [0.008s] Masking low complexity seeds... [0.007s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.028s] Building query seed array... [0.011s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.029s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.007s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.01s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.018s] Computing hash join... [0.005s] Masking low complexity seeds... [0.002s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.008s] Building query seed array... [0.007s] Computing hash join... [0.001s] Masking low complexity seeds... [0.007s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.008s] Computing hash join... [0.002s] Masking low complexity seeds... [0.003s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.01s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.007s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.016s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.018s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.007s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0.011s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.013s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.011s] Computing hash join... [0.008s] Masking low complexity seeds... [0.012s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.02s] Building query seed array... [0.027s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.007s] Computing hash join... [0.011s] Masking low complexity seeds... [0.004s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.002s] Sorting trace points... [0s] Computing alignments... [0.003s] Deallocating buffers... [0s] Loading trace points... [0s] [0.006s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 3.656s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/M.faa --out /tmp/tmp.J27HjrolZa/M.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.J27HjrolZa #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.019s] Algorithm: Double-indexed Building query histograms... [0.027s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.008s] Initializing temporary storage... [0s] Building reference histograms... [0.019s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.009s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.015s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.025s] Computing hash join... [0.014s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.015s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.01s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.023s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0.003s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.019s] Computing hash join... [0.004s] Masking low complexity seeds... [0.003s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.025s] Computing hash join... [0.006s] Masking low complexity seeds... [0.019s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0.001s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.018s] Computing hash join... [0.004s] Masking low complexity seeds... [0.008s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.008s] Building query seed array... [0.014s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.016s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.021s] Computing hash join... [0.014s] Masking low complexity seeds... [0.007s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.009s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.026s] Computing hash join... [0.009s] Masking low complexity seeds... [0.008s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.018s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.02s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.023s] Masking low complexity seeds... [0.003s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.01s] Building query seed array... [0.007s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.015s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.007s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.024s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.011s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.019s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.019s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.024s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.026s] Computing hash join... [0.009s] Masking low complexity seeds... [0.014s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.025s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.046s] Sorting trace points... [0s] Computing alignments... [0.015s] Deallocating buffers... [0.007s] Loading trace points... [0s] [0.071s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 4.868s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + rm -rf /tmp/tmp.J27HjrolZa make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/diamond-aligner/ cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/diamond-aligner-2.1.9/debian/diamond-aligner AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/diamond-aligner-2.1.9 -B/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/diamond-aligner-2.1.9/debian/diamond-aligner/usr/bin/diamond make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9' dh_compress --exclude=.pdf make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9' dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'diamond-aligner-dbgsym' in '../diamond-aligner-dbgsym_2.1.9-1_arm64.deb'. dpkg-deb: building package 'diamond-aligner' in '../diamond-aligner_2.1.9-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../diamond-aligner_2.1.9-1_arm64.buildinfo dpkg-genchanges --build=binary -O../diamond-aligner_2.1.9-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/870888 and its subdirectories I: Current time: Thu Sep 26 18:10:27 -12 2024 I: pbuilder-time-stamp: 1727417427 Fri Sep 27 06:10:40 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink01-arm64.debian.net. Fri Sep 27 06:10:40 UTC 2024 I: Preparing to do remote build '2' on codethink01-arm64.debian.net. Fri Sep 27 06:10:40 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink01-arm64.debian.net is marked as down. Fri Sep 27 06:10:40 UTC 2024 - checking via ssh if codethink01-arm64.debian.net is up. removed '/tmp/read-only-fs-test-io6dJk' ==================================================================================== Thu Oct 30 12:33:40 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink01-arm64, called using "2 diamond-aligner unstable /srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq 2.1.9-1" as arguments. Thu Oct 30 12:33:40 UTC 2025 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-bMmuV4EK" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Oct 30 12:33:40 UTC 2025 I: Downloading source for unstable/diamond-aligner=2.1.9-1 Reading package lists... NOTICE: 'diamond-aligner' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/diamond-aligner.git Please use: git clone https://salsa.debian.org/med-team/diamond-aligner.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 4441 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main diamond-aligner 2.1.9-1 (dsc) [2199 B] Get:2 http://deb.debian.org/debian unstable/main diamond-aligner 2.1.9-1 (tar) [4310 kB] Get:3 http://deb.debian.org/debian unstable/main diamond-aligner 2.1.9-1 (diff) [129 kB] Fetched 4441 kB in 0s (116 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'diamond-aligner' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/diamond-aligner.git Please use: git clone https://salsa.debian.org/med-team/diamond-aligner.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 4441 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main diamond-aligner 2.1.9-1 (dsc) [2199 B] Get:2 http://deb.debian.org/debian unstable/main diamond-aligner 2.1.9-1 (tar) [4310 kB] Get:3 http://deb.debian.org/debian unstable/main diamond-aligner 2.1.9-1 (diff) [129 kB] Fetched 4441 kB in 0s (116 MB/s) Download complete and in download only mode ============================================================================= Re-Building diamond-aligner in unstable on arm64 on codethink01-arm64 now. Date: Thu Oct 30 12:33:40 GMT 2025 Date UTC: Thu Oct 30 12:33:40 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq/pbuilderrc_Bhk2 + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' diamond-aligner = debian-installer -o diamond-aligner = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' diamond-aligner = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq/pbuilderrc_Bhk2 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq/b2 --logfile b2/build.log diamond-aligner_2.1.9-1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Oct 31 02:33:40 +14 2025 I: pbuilder-time-stamp: 1761827620 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [diamond-aligner_2.1.9-1.dsc] I: copying [./diamond-aligner_2.1.9.orig.tar.xz] I: copying [./diamond-aligner_2.1.9-1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Feb 7 10:24:42 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./diamond-aligner_2.1.9-1.dsc: no acceptable signature found dpkg-source: info: extracting diamond-aligner in diamond-aligner-2.1.9 dpkg-source: info: unpacking diamond-aligner_2.1.9.orig.tar.xz dpkg-source: info: unpacking diamond-aligner_2.1.9-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3249741/tmp/hooks/D01_modify_environment starting debug: Running on codethink01-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 30 12:33 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3249741/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3249741/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=1d36eb72fade43408b7134ae53b41f18 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3249741 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq/pbuilderrc_Bhk2 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq/b2 --logfile b2/build.log diamond-aligner_2.1.9-1.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3249741/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, zlib1g-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19897 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 54 newly installed, 0 to remove and 0 not upgraded. Need to get 35.5 MB of archives. After unpacking 137 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-5 [61.3 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-5 [868 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-8 [96.6 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.1 [630 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-1 [323 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b4 [292 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.1-1 [22.8 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-3 [9112 B] Get: 26 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3 [174 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.63.0-1 [71.2 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.0-7 [208 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.10.1-1 [322 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.3-1 [90.2 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libjsoncpp25 arm64 1.9.5-6+b2 [73.2 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 librhash0 arm64 1.4.3-3+b1 [127 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.48.0-6 [142 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 cmake-data all 3.30.3-1 [2221 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 cmake arm64 3.30.3-1 [9398 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 48 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.191-2 [188 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB] Fetched 35.5 MB in 0s (101 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19897 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-5_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-5) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-5_arm64.deb ... Unpacking procps (2:4.0.4-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3249741/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/3249741/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/diamond-aligner-2.1.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../diamond-aligner_2.1.9-1_source.changes dpkg-buildpackage: info: source package diamond-aligner dpkg-buildpackage: info: source version 2.1.9-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9' dh_auto_configure -- -DX86=OFF -DCMAKE_BUILD_TYPE=Release cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DX86=OFF -DCMAKE_BUILD_TYPE=Release .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of ptrdiff_t -- Check size of ptrdiff_t - done -- Check size of int -- Check size of int - done -- Performing Test HAS_GNUPP14 -- Performing Test HAS_GNUPP14 - Success -- 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-Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_NEON -DARCH_ID=4 -D__ARM_NEON -D__aarch64__ -DEigen=Eigen_NEON -MD -MT CMakeFiles/arch_neon.dir/src/search/stage1_2.cpp.o -MF CMakeFiles/arch_neon.dir/src/search/stage1_2.cpp.o.d -o CMakeFiles/arch_neon.dir/src/search/stage1_2.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/search/stage1_2.cpp [ 3%] Building CXX object CMakeFiles/arch_neon.dir/src/tools/benchmark.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong 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CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/scan_diags.cpp /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_NEON -DARCH_ID=4 -D__ARM_NEON -D__aarch64__ -DEigen=Eigen_NEON -MD -MT CMakeFiles/arch_neon.dir/src/masking/tantan.cpp.o -MF CMakeFiles/arch_neon.dir/src/masking/tantan.cpp.o.d -o CMakeFiles/arch_neon.dir/src/masking/tantan.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/masking/tantan.cpp /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/ungapped_simd.cpp [ 7%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/pfscan/pfscan.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/pfscan/pfscan.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/pfscan/pfscan.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/pfscan/pfscan.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/pfscan/pfscan.cpp [ 7%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/anchored_wrapper.cpp [ 8%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/score_profile.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/cell_update.h:23, from /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:34: /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h: In instantiation of ‘void set_channel(ForwardCell&, int, typename ARCH_NEON::ScoreTraits::Score) [with Sv = int; typename ARCH_NEON::ScoreTraits::Score = int]’: /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:76:15: required from ‘void DP::Swipe::ARCH_NEON::Matrix::set_zero(int) [with Sv = ForwardCell]’ 76 | set_channel(hgap_[i], c, z); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:232:17: required from ‘std::__cxx11::list DP::Swipe::ARCH_NEON::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, ForwardCell, VectorIdMask >]’ 232 | dp.set_zero(c); | ~~~~~~~~~~~^~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:141:61: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::dispatch_swipe(It, It, std::atomic*, Cbs, std::vector&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, ForwardCell, VectorIdMask >]’ 141 | return ::DP::Swipe::DISPATCH_ARCH::swipe(begin, end, next, composition_bias, overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:154:44: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::dispatch_swipe(It, It, std::atomic*, std::vector&, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, ForwardCell, VectorIdMask >]’ 154 | return dispatch_swipe(begin, end, next, NoCBS(), overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:177:38: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::dispatch_swipe(It, It, std::atomic*, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ 177 | return dispatch_swipe(begin, end, next, overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:277:32: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::swipe_threads(It, It, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ 277 | return dispatch_swipe(begin, end, &next, overflow, round, bin, p); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:341:35: required from ‘std::pair, std::vector > DP::BandedSwipe::ARCH_NEON::swipe_bin(unsigned int, It, It, int, DP::Params&) [with It = __gnu_cxx::__normal_iterator >]’ 341 | out = swipe_threads(begin, end, overflow, round, bin, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:397:21: required from here 397 | auto r = swipe_bin(bin, dp_targets[bin].begin(), dp_targets[bin].end(), 1, params); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h:100:21: warning: casting ‘ForwardCell’ to ‘int&’ does not use ‘ForwardCell::operator int32_t() const’ [-Wcast-user-defined] 100 | set_channel((Sv&)v, i, x); | ^~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h: In instantiation of ‘void set_channel(BackwardCell&, int, typename ARCH_NEON::ScoreTraits::Score) [with Sv = int; typename ARCH_NEON::ScoreTraits::Score = int]’: /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:76:15: required from ‘void DP::Swipe::ARCH_NEON::Matrix::set_zero(int) [with Sv = BackwardCell]’ 76 | set_channel(hgap_[i], c, z); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:232:17: required from ‘std::__cxx11::list DP::Swipe::ARCH_NEON::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, BackwardCell, VectorIdMask >]’ 232 | dp.set_zero(c); | ~~~~~~~~~~~^~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:141:61: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::dispatch_swipe(It, It, std::atomic*, Cbs, std::vector&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, BackwardCell, VectorIdMask >]’ 141 | return ::DP::Swipe::DISPATCH_ARCH::swipe(begin, end, next, composition_bias, overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:154:44: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::dispatch_swipe(It, It, std::atomic*, std::vector&, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, BackwardCell, VectorIdMask >]’ 154 | return dispatch_swipe(begin, end, next, NoCBS(), overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:187:38: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::dispatch_swipe(It, It, std::atomic*, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ 187 | return dispatch_swipe(begin, end, next, overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:277:32: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::swipe_threads(It, It, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ 277 | return dispatch_swipe(begin, end, &next, overflow, round, bin, p); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:341:35: required from ‘std::pair, std::vector > DP::BandedSwipe::ARCH_NEON::swipe_bin(unsigned int, It, It, int, DP::Params&) [with It = __gnu_cxx::__normal_iterator >]’ 341 | out = swipe_threads(begin, end, overflow, round, bin, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:397:21: required from here 397 | auto r = swipe_bin(bin, dp_targets[bin].begin(), dp_targets[bin].end(), 1, params); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h:158:21: warning: casting ‘BackwardCell’ to ‘int&’ does not use ‘BackwardCell::operator int32_t() const’ [-Wcast-user-defined] 158 | set_channel((Sv&)v, i, x); | ^~~~~~ In file included from /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/cell_update.h:23, from /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:34: /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h: In instantiation of ‘void set_channel(ForwardCell&, int, typename ARCH_GENERIC::ScoreTraits::Score) [with Sv = int; typename ARCH_GENERIC::ScoreTraits::Score = int]’: /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:76:15: required from ‘void DP::Swipe::ARCH_GENERIC::Matrix::set_zero(int) [with Sv = ForwardCell]’ 76 | set_channel(hgap_[i], c, z); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:232:17: required from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, ForwardCell, VectorIdMask >]’ 232 | dp.set_zero(c); | ~~~~~~~~~~~^~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:141:61: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::dispatch_swipe(It, It, std::atomic*, Cbs, std::vector&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, ForwardCell, VectorIdMask >]’ 141 | return ::DP::Swipe::DISPATCH_ARCH::swipe(begin, end, next, composition_bias, overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:154:44: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::dispatch_swipe(It, It, std::atomic*, std::vector&, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, ForwardCell, VectorIdMask >]’ 154 | return dispatch_swipe(begin, end, next, NoCBS(), overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:177:38: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::dispatch_swipe(It, It, std::atomic*, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ 177 | return dispatch_swipe(begin, end, next, overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:277:32: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::swipe_threads(It, It, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ 277 | return dispatch_swipe(begin, end, &next, overflow, round, bin, p); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:341:35: required from ‘std::pair, std::vector > DP::BandedSwipe::ARCH_GENERIC::swipe_bin(unsigned int, It, It, int, DP::Params&) [with It = __gnu_cxx::__normal_iterator >]’ 341 | out = swipe_threads(begin, end, overflow, round, bin, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:397:21: required from here 397 | auto r = swipe_bin(bin, dp_targets[bin].begin(), dp_targets[bin].end(), 1, params); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h:100:21: warning: casting ‘ForwardCell’ to ‘int&’ does not use ‘ForwardCell::operator int32_t() const’ [-Wcast-user-defined] 100 | set_channel((Sv&)v, i, x); | ^~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h: In instantiation of ‘void set_channel(BackwardCell&, int, typename ARCH_GENERIC::ScoreTraits::Score) [with Sv = int; typename ARCH_GENERIC::ScoreTraits::Score = int]’: /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:76:15: required from ‘void DP::Swipe::ARCH_GENERIC::Matrix::set_zero(int) [with Sv = BackwardCell]’ 76 | set_channel(hgap_[i], c, z); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:232:17: required from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, BackwardCell, VectorIdMask >]’ 232 | dp.set_zero(c); | ~~~~~~~~~~~^~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:141:61: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::dispatch_swipe(It, It, std::atomic*, Cbs, std::vector&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, BackwardCell, VectorIdMask >]’ 141 | return ::DP::Swipe::DISPATCH_ARCH::swipe(begin, end, next, composition_bias, overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:154:44: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::dispatch_swipe(It, It, std::atomic*, std::vector&, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, BackwardCell, VectorIdMask >]’ 154 | return dispatch_swipe(begin, end, next, NoCBS(), overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:187:38: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::dispatch_swipe(It, It, std::atomic*, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ 187 | return dispatch_swipe(begin, end, next, overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:277:32: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::swipe_threads(It, It, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ 277 | return dispatch_swipe(begin, end, &next, overflow, round, bin, p); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:341:35: required from ‘std::pair, std::vector > DP::BandedSwipe::ARCH_GENERIC::swipe_bin(unsigned int, It, It, int, DP::Params&) [with It = __gnu_cxx::__normal_iterator >]’ 341 | out = swipe_threads(begin, end, overflow, round, bin, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:397:21: required from here 397 | auto r = swipe_bin(bin, dp_targets[bin].begin(), dp_targets[bin].end(), 1, params); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h:158:21: warning: casting ‘BackwardCell’ to ‘int&’ does not use ‘BackwardCell::operator int32_t() const’ [-Wcast-user-defined] 158 | set_channel((Sv&)v, i, x); | ^~~~~~ [ 8%] Building CXX object CMakeFiles/arch_neon.dir/src/dp/scan_diags.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_NEON -DARCH_ID=4 -D__ARM_NEON -D__aarch64__ -DEigen=Eigen_NEON -MD -MT CMakeFiles/arch_neon.dir/src/dp/scan_diags.cpp.o -MF CMakeFiles/arch_neon.dir/src/dp/scan_diags.cpp.o.d -o CMakeFiles/arch_neon.dir/src/dp/scan_diags.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/scan_diags.cpp [ 9%] Building CXX object CMakeFiles/arch_neon.dir/src/dp/ungapped_simd.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_NEON -DARCH_ID=4 -D__ARM_NEON -D__aarch64__ -DEigen=Eigen_NEON -MD -MT CMakeFiles/arch_neon.dir/src/dp/ungapped_simd.cpp.o -MF CMakeFiles/arch_neon.dir/src/dp/ungapped_simd.cpp.o.d -o CMakeFiles/arch_neon.dir/src/dp/ungapped_simd.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/ungapped_simd.cpp [ 9%] Building CXX object CMakeFiles/arch_neon.dir/src/dp/pfscan/pfscan.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_NEON -DARCH_ID=4 -D__ARM_NEON -D__aarch64__ -DEigen=Eigen_NEON -MD -MT CMakeFiles/arch_neon.dir/src/dp/pfscan/pfscan.cpp.o -MF CMakeFiles/arch_neon.dir/src/dp/pfscan/pfscan.cpp.o.d -o CMakeFiles/arch_neon.dir/src/dp/pfscan/pfscan.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/pfscan/pfscan.cpp [ 10%] Building CXX object CMakeFiles/arch_neon.dir/src/dp/swipe/anchored_wrapper.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_NEON -DARCH_ID=4 -D__ARM_NEON -D__aarch64__ -DEigen=Eigen_NEON -MD -MT CMakeFiles/arch_neon.dir/src/dp/swipe/anchored_wrapper.cpp.o -MF CMakeFiles/arch_neon.dir/src/dp/swipe/anchored_wrapper.cpp.o.d -o CMakeFiles/arch_neon.dir/src/dp/swipe/anchored_wrapper.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/anchored_wrapper.cpp [ 10%] Building CXX object CMakeFiles/arch_neon.dir/src/dp/score_profile.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_NEON -DARCH_ID=4 -D__ARM_NEON -D__aarch64__ -DEigen=Eigen_NEON -MD -MT CMakeFiles/arch_neon.dir/src/dp/score_profile.cpp.o -MF CMakeFiles/arch_neon.dir/src/dp/score_profile.cpp.o.d -o CMakeFiles/arch_neon.dir/src/dp/score_profile.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/score_profile.cpp In file included from /usr/include/c++/14/list:62, from /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:22: In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_NEON::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_NEON::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_NEON::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_NEON::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_NEON::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_NEON::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_NEON::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_NEON::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_NEON::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In file included from /usr/include/c++/14/list:62, from /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:22: In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' [ 10%] Built target arch_generic make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' [ 10%] Built target arch_neon make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/depend make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' cd /build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/diamond-aligner-2.1.9 /build/reproducible-path/diamond-aligner-2.1.9 /build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu/CMakeFiles/diamond.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/build make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' [ 11%] Building CXX object CMakeFiles/diamond.dir/src/run/main.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/run/main.cpp.o -MF CMakeFiles/diamond.dir/src/run/main.cpp.o.d -o CMakeFiles/diamond.dir/src/run/main.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/run/main.cpp [ 12%] Building CXX object CMakeFiles/diamond.dir/src/stats/score_matrix.cpp.o [ 12%] Building CXX object CMakeFiles/diamond.dir/src/basic/config.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard 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CMakeFiles/diamond.dir/src/data/seed_histogram.cpp.o -MF CMakeFiles/diamond.dir/src/data/seed_histogram.cpp.o.d -o CMakeFiles/diamond.dir/src/data/seed_histogram.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/data/seed_histogram.cpp [ 14%] Building CXX object CMakeFiles/diamond.dir/src/output/daa/daa_record.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/output/daa/daa_record.cpp.o 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-Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogprobproto.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogprobproto.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogprobproto.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprobproto.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:39, from /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.cpp:37: /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprob.hpp:110:37: warning: ‘virtual Njn::DynProgProb& Njn::DynProgProb::operator=(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 110 | virtual inline DynProgProb &operator= (const DynProgProb &dynProgProb_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:90:40: note: by ‘virtual Njn::DynProgProbLim& Njn::DynProgProbLim::operator=(const Njn::DynProgProbLim&)’ 90 | virtual inline DynProgProbLim &operator= (const DynProgProbLim &dynProgProbLim_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprob.hpp:124:22: warning: ‘virtual void Njn::DynProgProb::copy(size_t, const double* const*, size_t, long int, long int, long int, long int (*)(long int, size_t), size_t, const double*)’ was hidden [-Woverloaded-virtual=] 124 | virtual void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprob.hpp:116:29: warning: ‘virtual void Njn::DynProgProb::copy(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 116 | virtual inline void copy (const DynProgProb &dynProgProb_) | ^~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ [ 57%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_ioutil.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/njn_ioutil.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/njn_ioutil.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/njn_ioutil.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_ioutil.cpp [ 58%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstat.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstat.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstat.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstat.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_localmaxstat.cpp cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 58%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatmatrix.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatmatrix.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatmatrix.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatmatrix.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_localmaxstatmatrix.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:39, from /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_localmaxstat.cpp:39: /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprob.hpp:110:37: warning: ‘virtual Njn::DynProgProb& Njn::DynProgProb::operator=(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 110 | virtual inline DynProgProb &operator= (const DynProgProb &dynProgProb_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:90:40: note: by ‘virtual Njn::DynProgProbLim& Njn::DynProgProbLim::operator=(const Njn::DynProgProbLim&)’ 90 | virtual inline DynProgProbLim &operator= (const DynProgProbLim &dynProgProbLim_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprob.hpp:124:22: warning: ‘virtual void Njn::DynProgProb::copy(size_t, const double* const*, size_t, long int, long int, long int, long int (*)(long int, size_t), size_t, const double*)’ was hidden [-Woverloaded-virtual=] 124 | virtual void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprob.hpp:116:29: warning: ‘virtual void Njn::DynProgProb::copy(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 116 | virtual inline void copy (const DynProgProb &dynProgProb_) | ^~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ [ 59%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatutil.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatutil.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_localmaxstatutil.cpp [ 59%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_random.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/njn_random.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/njn_random.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/njn_random.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_random.cpp cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 60%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alignment_evaluer.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alignment_evaluer.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alignment_evaluer.cpp.o -c 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/build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/sls_alp.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:39, from /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_localmaxstatutil.cpp:39: /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprob.hpp:110:37: warning: ‘virtual Njn::DynProgProb& Njn::DynProgProb::operator=(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 110 | virtual inline DynProgProb &operator= (const DynProgProb &dynProgProb_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:90:40: note: by ‘virtual Njn::DynProgProbLim& Njn::DynProgProbLim::operator=(const Njn::DynProgProbLim&)’ 90 | virtual inline DynProgProbLim &operator= (const DynProgProbLim &dynProgProbLim_) | ^~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprob.hpp:124:22: warning: ‘virtual void Njn::DynProgProb::copy(size_t, const double* const*, size_t, long int, long int, long int, long int (*)(long int, size_t), size_t, const double*)’ was hidden [-Woverloaded-virtual=] 124 | virtual void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprob.hpp:116:29: warning: ‘virtual void Njn::DynProgProb::copy(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] 116 | virtual inline void copy (const DynProgProb &dynProgProb_) | ^~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ [ 61%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/sls_alp_data.cpp cc1plus: note: unrecognized command-line option ‘-Wno-unknown-warning-option’ may have been intended to silence earlier diagnostics [ 62%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/sls_alp_regression.cpp [ 62%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/sls_alp_sim.cpp [ 63%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_basic.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_basic.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_basic.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_basic.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/sls_basic.cpp [ 63%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_pvalues.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_pvalues.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_pvalues.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_pvalues.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/sls_pvalues.cpp [ 64%] Building CXX object CMakeFiles/diamond.dir/src/align/global_ranking/global_ranking.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/align/global_ranking/global_ranking.cpp.o -MF CMakeFiles/diamond.dir/src/align/global_ranking/global_ranking.cpp.o.d -o CMakeFiles/diamond.dir/src/align/global_ranking/global_ranking.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/align/global_ranking/global_ranking.cpp [ 64%] Building CXX object CMakeFiles/diamond.dir/src/align/global_ranking/extend.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON 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CMakeFiles/arch_generic.dir/src/dp/pfscan/pfscan.cpp.o CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o CMakeFiles/arch_neon.dir/src/dp/swipe/banded_3frame_swipe.cpp.o CMakeFiles/arch_neon.dir/src/search/stage1_2.cpp.o CMakeFiles/arch_neon.dir/src/tools/benchmark.cpp.o CMakeFiles/arch_neon.dir/src/dp/swipe/swipe_wrapper.cpp.o CMakeFiles/arch_neon.dir/src/masking/tantan.cpp.o CMakeFiles/arch_neon.dir/src/dp/scan_diags.cpp.o CMakeFiles/arch_neon.dir/src/dp/ungapped_simd.cpp.o CMakeFiles/arch_neon.dir/src/dp/pfscan/pfscan.cpp.o CMakeFiles/arch_neon.dir/src/dp/swipe/anchored_wrapper.cpp.o CMakeFiles/arch_neon.dir/src/dp/score_profile.cpp.o -o diamond -lz make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' [100%] Built target diamond make[2]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9' cd debian/tests && PATH=/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path sh diamond-calls ++ mktemp -d + TESTDIR=/tmp/tmp.5la2s1Wo43 + diamond blastp --threads 1 --db test/C.faa.diamond --query test/E.faa --out /tmp/tmp.5la2s1Wo43/E.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.032s] Algorithm: Double-indexed Building query histograms... [0.046s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.015s] Initializing temporary storage... [0s] Building reference histograms... [0.039s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.027s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.016s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.038s] Building query seed array... [0.031s] Computing hash join... [0.007s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.024s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.012s] Masking low complexity seeds... [0.012s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.031s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.03s] Computing hash join... [0.003s] Masking low complexity seeds... [0.016s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.002s] Computing hash join... [0.003s] Masking low complexity seeds... [0.004s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.019s] Computing hash join... [0.014s] Masking low complexity seeds... [0.013s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.031s] Computing hash join... [0.003s] Masking low complexity seeds... [0.012s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.034s] Building query seed array... [0.028s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.013s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0.004s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.027s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.035s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.028s] Computing hash join... [0.014s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.016s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.029s] Building query seed array... [0.025s] Computing hash join... [0.006s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.02s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.029s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.005s] Building query seed array... [0.019s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.025s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.034s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.035s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.027s] Computing hash join... [0.006s] Masking low complexity seeds... [0.013s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.028s] Computing hash join... [0.006s] Masking low complexity seeds... [0.012s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.027s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.003s] Building query seed array... [0.01s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.02s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.019s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.025s] Building query seed array... [0.03s] Computing hash join... [0.009s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.027s] Computing hash join... [0.008s] Masking low complexity seeds... [0.012s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.013s] Masking low complexity seeds... [0.013s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.034s] Building query seed array... [0.016s] Computing hash join... [0.013s] Masking low complexity seeds... [0.011s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.017s] Building query seed array... [0.033s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.02s] Building query seed array... [0.016s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.45s] Sorting trace points... [0s] Computing alignments... [0.399s] Deallocating buffers... [0.007s] Loading trace points... [0s] [0.859s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 6.658s Reported 77 pairwise alignments, 77 HSPs. 72 queries aligned. + diamond blastp --threads 1 --db test/E.faa.diamond --query test/C.faa --out /tmp/tmp.5la2s1Wo43/C.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.054s] Algorithm: Double-indexed Building query histograms... [0.035s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.015s] Initializing temporary storage... [0s] Building reference histograms... [0.048s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.014s] Building query seed array... [0.032s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.017s] Building query seed array... [0.035s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.028s] Computing hash join... [0.015s] Masking low complexity seeds... [0.004s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.031s] Computing hash join... [0.013s] Masking low complexity seeds... [0.014s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.017s] Building query seed array... [0.031s] Computing hash join... [0.016s] Masking low complexity seeds... [0.01s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.035s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.028s] Building query seed array... [0.018s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0.012s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.02s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.019s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.016s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0.003s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.016s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0.012s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.028s] Building query seed array... [0.029s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.031s] Computing hash join... [0.012s] Masking low complexity seeds... [0.002s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.028s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.004s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.008s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.028s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.024s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.028s] Building query seed array... [0.03s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.032s] Building query seed array... [0.021s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.032s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.001s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.128s] Sorting trace points... [0s] Computing alignments... [0.079s] Deallocating buffers... [0.004s] Loading trace points... [0s] [0.213s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 6.445s Reported 41 pairwise alignments, 41 HSPs. 15 queries aligned. + diamond blastp --threads 1 --db test/C.faa.diamond --query test/L.faa --out /tmp/tmp.5la2s1Wo43/L.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.047s] Algorithm: Double-indexed Building query histograms... [0.027s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.005s] Initializing temporary storage... [0s] Building reference histograms... [0.008s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.035s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.018s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.031s] Computing hash join... [0.012s] Masking low complexity seeds... [0.013s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.015s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.017s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.028s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.028s] Building query seed array... [0.035s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.028s] Computing hash join... [0.014s] Masking low complexity seeds... [0.009s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0.002s] Masking low complexity seeds... [0.001s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.035s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.034s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.032s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.014s] Computing hash join... [0.005s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.029s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.025s] Building query seed array... [0.047s] Computing hash join... [0.035s] Masking low complexity seeds... [0.004s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.021s] Building query seed array... [0.03s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.009s] Masking low complexity seeds... [0.003s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.013s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0s] Masking low complexity seeds... [0.001s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.016s] Building query seed array... [0.026s] Computing hash join... [0.012s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.014s] Computing hash join... [0.011s] Masking low complexity seeds... [0.004s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.004s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.025s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.015s] Computing hash join... [0.015s] Masking low complexity seeds... [0.027s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.022s] Computing hash join... [0.006s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.017s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.362s] Sorting trace points... [0s] Computing alignments... [0.179s] Deallocating buffers... [0.003s] Loading trace points... [0s] [0.547s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 6.582s Reported 64 pairwise alignments, 64 HSPs. 33 queries aligned. + diamond blastp --threads 1 --db test/L.faa.diamond --query test/C.faa --out /tmp/tmp.5la2s1Wo43/C.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.055s] Algorithm: Double-indexed Building query histograms... [0.035s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.015s] Initializing temporary storage... [0s] Building reference histograms... [0.035s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.021s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.011s] Building query seed array... [0.031s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.032s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.016s] Masking low complexity seeds... [0.016s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.029s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.032s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.035s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.007s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.034s] Building query seed array... [0.007s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.011s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.015s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.031s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.016s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.032s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.029s] Computing hash join... [0.014s] Masking low complexity seeds... [0.012s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.011s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.024s] Computing hash join... [0.014s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.032s] Building query seed array... [0.031s] Computing hash join... [0.012s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.007s] Masking low complexity seeds... [0.012s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.031s] Computing hash join... [0.008s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.028s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.007s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.032s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.005s] Searching alignments... [0.001s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.521s] Sorting trace points... [0s] Computing alignments... [0.305s] Deallocating buffers... [0s] Loading trace points... [0s] [0.827s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 7.397s Reported 133 pairwise alignments, 133 HSPs. 109 queries aligned. + diamond blastp --threads 1 --db test/C.faa.diamond --query test/M.faa --out /tmp/tmp.5la2s1Wo43/M.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.046s] Algorithm: Double-indexed Building query histograms... [0.035s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.015s] Initializing temporary storage... [0s] Building reference histograms... [0.035s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.007s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.035s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.022s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.028s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.028s] Computing hash join... [0.016s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.014s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.035s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.028s] Building query seed array... [0.026s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.015s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.013s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.011s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.034s] Computing hash join... [0.016s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.016s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.021s] Building query seed array... [0.028s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.016s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.001s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.009s] Building query seed array... [0.029s] Computing hash join... [0.015s] Masking low complexity seeds... [0.013s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.001s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.362s] Sorting trace points... [0s] Computing alignments... [0.171s] Deallocating buffers... [0.004s] Loading trace points... [0s] [0.539s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 7.392s Reported 62 pairwise alignments, 62 HSPs. 33 queries aligned. + diamond blastp --threads 1 --db test/M.faa.diamond --query test/C.faa --out /tmp/tmp.5la2s1Wo43/C.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.058s] Algorithm: Double-indexed Building query histograms... [0.039s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.013s] Initializing temporary storage... [0s] Building reference histograms... [0.034s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.034s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.016s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.024s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.027s] Computing hash join... [0.005s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.007s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.014s] Masking low complexity seeds... [0.009s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.012s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.028s] Building query seed array... [0.03s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.012s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.016s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0.004s] Masking low complexity seeds... [0.005s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.009s] Computing hash join... [0.01s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.026s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.035s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.008s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.011s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.506s] Sorting trace points... [0s] Computing alignments... [0.232s] Deallocating buffers... [0s] Loading trace points... [0s] [0.74s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 6.517s Reported 131 pairwise alignments, 131 HSPs. 109 queries aligned. + diamond blastp --ignore-warnings --threads 1 --db test/C.faa.diamond --query test/C2.faa --out /tmp/tmp.5la2s1Wo43/C2.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0s] Algorithm: Double-indexed Building query histograms... [0.001s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.011s] Initializing temporary storage... [0s] Building reference histograms... [0.024s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.019s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.009s] Building query seed array... [0.011s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.014s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.019s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.014s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.006s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.032s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.013s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.024s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.007s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.011s] Building query seed array... [0.011s] Computing hash join... [0.011s] Masking low complexity seeds... [0.009s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.012s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.042s] Building query seed array... [0.035s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.012s] Masking low complexity seeds... [0.012s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.016s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.015s] Building query seed array... [0.027s] Computing hash join... [0.004s] Masking low complexity seeds... [0.003s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.043s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.016s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.028s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.031s] Computing hash join... [0.012s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.024s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.018s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.028s] Building query seed array... [0.034s] Computing hash join... [0.014s] Masking low complexity seeds... [0.009s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.043s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.01s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.01s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.007s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.017s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.046s] Sorting trace points... [0s] Computing alignments... [0.007s] Deallocating buffers... [0.007s] Loading trace points... [0s] [0.063s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 5.724s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/C.faa --out /tmp/tmp.5la2s1Wo43/C.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.053s] Algorithm: Double-indexed Building query histograms... [0.027s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.007s] Initializing temporary storage... [0s] Building reference histograms... [0.031s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.032s] Computing hash join... [0.014s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.034s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.031s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.005s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.027s] Computing hash join... [0.027s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.001s] Masking low complexity seeds... [0.004s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.032s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.028s] Building query seed array... [0.031s] Computing hash join... [0.019s] Masking low complexity seeds... [0.012s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.006s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.027s] Computing hash join... [0.012s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.01s] Building query seed array... [0.011s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.009s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.011s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.034s] Building query seed array... [0.035s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.017s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.015s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.011s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.012s] Masking low complexity seeds... [0.01s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.025s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.015s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.035s] Building query seed array... [0.029s] Computing hash join... [0.014s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.028s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.01s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.046s] Sorting trace points... [0s] Computing alignments... [0.015s] Deallocating buffers... [0.007s] Loading trace points... [0s] [0.071s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 5.931s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/E.faa.diamond --query test/L.faa --out /tmp/tmp.5la2s1Wo43/L.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.046s] Algorithm: Double-indexed Building query histograms... [0.039s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.015s] Initializing temporary storage... [0s] Building reference histograms... [0.043s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.029s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.008s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0.002s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.029s] Building query seed array... [0.023s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.011s] Building query seed array... [0.011s] Computing hash join... [0.001s] Masking low complexity seeds... [0.004s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.003s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.017s] Building query seed array... [0.023s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.004s] Building query seed array... [0.018s] Computing hash join... [0.009s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.003s] Building query seed array... [0.003s] Computing hash join... [0.001s] Masking low complexity seeds... [0.002s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.006s] Building query seed array... [0.004s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.008s] Building query seed array... [0.005s] Computing hash join... [0.003s] Masking low complexity seeds... [0.005s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.03s] Computing hash join... [0.003s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.034s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.012s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.031s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.028s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.005s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.032s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.034s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.021s] Computing hash join... [0.014s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.024s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.355s] Sorting trace points... [0s] Computing alignments... [0.49s] Deallocating buffers... [0s] Loading trace points... [0s] [0.848s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 6.111s Reported 489 pairwise alignments, 489 HSPs. 32 queries aligned. + diamond blastp --threads 1 --db test/L.faa.diamond --query test/E.faa --out /tmp/tmp.5la2s1Wo43/E.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.008s] Algorithm: Double-indexed Building query histograms... [0.009s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.001s] Initializing temporary storage... [0s] Building reference histograms... [0.004s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.031s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.015s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.036s] Computing hash join... [0.014s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.008s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.031s] Computing hash join... [0.016s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.029s] Building query seed array... [0.028s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.019s] Masking low complexity seeds... [0.011s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.014s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.028s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.005s] Building query seed array... [0.014s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.018s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.011s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.015s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.035s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.015s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.039s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.019s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.021s] Computing hash join... [0.003s] Masking low complexity seeds... [0.001s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.004s] Building query seed array... [0.013s] Computing hash join... [0.019s] Masking low complexity seeds... [0.003s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0.001s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.031s] Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.004s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.014s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.007s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.012s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.007s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.005s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.451s] Sorting trace points... [0s] Computing alignments... [1.119s] Deallocating buffers... [0.007s] Loading trace points... [0s] [1.58s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 6.929s Reported 1173 pairwise alignments, 1173 HSPs. 72 queries aligned. + diamond blastp --threads 1 --db test/E.faa.diamond --query test/M.faa --out /tmp/tmp.5la2s1Wo43/M.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.045s] Algorithm: Double-indexed Building query histograms... [0.023s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.015s] Initializing temporary storage... [0s] Building reference histograms... [0.035s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.043s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.018s] Building query seed array... [0.031s] Computing hash join... [0.007s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.011s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.029s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.018s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.013s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.003s] Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.017s] Building query seed array... [0.03s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.012s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.003s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0.007s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.032s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.014s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.03s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.008s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.03s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.01s] Building query seed array... [0.015s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.012s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.024s] Computing hash join... [0.005s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.011s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.02s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.031s] Computing hash join... [0.012s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.013s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.051s] Sorting trace points... [0s] Computing alignments... [0.607s] Deallocating buffers... [0.004s] Loading trace points... [0s] [0.664s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 6.601s Reported 489 pairwise alignments, 489 HSPs. 32 queries aligned. + diamond blastp --threads 1 --db test/M.faa.diamond --query test/E.faa --out /tmp/tmp.5la2s1Wo43/E.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.032s] Algorithm: Double-indexed Building query histograms... [0.047s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.015s] Initializing temporary storage... [0s] Building reference histograms... [0.036s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.014s] Masking low complexity seeds... [0.008s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.009s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.015s] Computing hash join... [0.014s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.013s] Masking low complexity seeds... [0.014s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.009s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0.002s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.035s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.024s] Building query seed array... [0.028s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.028s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.02s] Building query seed array... [0.023s] Computing hash join... [0.006s] Masking low complexity seeds... [0.008s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.019s] Computing hash join... [0.019s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.009s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.02s] Building query seed array... [0.032s] Computing hash join... [0.01s] Masking low complexity seeds... [0.003s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.006s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.018s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.024s] Computing hash join... [0.014s] Masking low complexity seeds... [0.007s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.025s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.024s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.018s] Building query seed array... [0.024s] Computing hash join... [0.01s] Masking low complexity seeds... [0.007s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.018s] Building query seed array... [0.02s] Computing hash join... [0.014s] Masking low complexity seeds... [0.007s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.016s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.033s] Building query seed array... [0.028s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.02s] Computing hash join... [0.01s] Masking low complexity seeds... [0.011s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.022s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.004s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.025s] Computing hash join... [0.014s] Masking low complexity seeds... [0.008s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.032s] Building query seed array... [0.016s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.358s] Sorting trace points... [0s] Computing alignments... [1.21s] Deallocating buffers... [0.003s] Loading trace points... [0s] [1.575s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 7.596s Reported 1173 pairwise alignments, 1173 HSPs. 72 queries aligned. + diamond blastp --ignore-warnings --threads 1 --db test/E.faa.diamond --query test/C2.faa --out /tmp/tmp.5la2s1Wo43/C2.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.012s] Algorithm: Double-indexed Building query histograms... [0.022s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.013s] Initializing temporary storage... [0s] Building reference histograms... [0.045s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.017s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.022s] Computing hash join... [0.012s] Masking low complexity seeds... [0.012s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.026s] Computing hash join... [0.006s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.025s] Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.005s] Building query seed array... [0.004s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.009s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.012s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.024s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.014s] Masking low complexity seeds... [0.003s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.011s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.012s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.018s] Computing hash join... [0.012s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.019s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.021s] Computing hash join... [0.014s] Masking low complexity seeds... [0.004s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.011s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.022s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.022s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.034s] Building query seed array... [0.035s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.024s] Computing hash join... [0.006s] Masking low complexity seeds... [0.015s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.006s] Computing hash join... [0.016s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.024s] Building query seed array... [0.014s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.018s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.024s] Building query seed array... [0.002s] Computing hash join... [0.009s] Masking low complexity seeds... [0.01s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.014s] Computing hash join... [0.003s] Masking low complexity seeds... [0.008s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.024s] Computing hash join... [0.016s] Masking low complexity seeds... [0.007s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.015s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.03s] Computing hash join... [0.011s] Masking low complexity seeds... [0.002s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.025s] Building query seed array... [0.024s] Computing hash join... [0s] Masking low complexity seeds... [0.001s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.003s] Building query seed array... [0.012s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.006s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.029s] Building query seed array... [0.026s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.02s] Building query seed array... [0.019s] Computing hash join... [0.006s] Masking low complexity seeds... [0.012s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.018s] Building query seed array... [0.015s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.038s] Building query seed array... [0.011s] Computing hash join... [0.003s] Masking low complexity seeds... [0.019s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.011s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.004s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.029s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.02s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.022s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0.005s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.014s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.004s] Building query seed array... [0.004s] Computing hash join... [0.001s] Masking low complexity seeds... [0.003s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.018s] Building query seed array... [0.008s] Computing hash join... [0.007s] Masking low complexity seeds... [0.015s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.022s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.026s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.024s] Building query seed array... [0.028s] Computing hash join... [0.014s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.025s] Building query seed array... [0.022s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.024s] Computing hash join... [0.019s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.032s] Computing hash join... [0.007s] Masking low complexity seeds... [0.012s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.028s] Building query seed array... [0.015s] Computing hash join... [0.016s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.031s] Sorting trace points... [0s] Computing alignments... [0.014s] Deallocating buffers... [0.003s] Loading trace points... [0s] [0.051s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 4.648s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/E.faa --out /tmp/tmp.5la2s1Wo43/E.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.026s] Algorithm: Double-indexed Building query histograms... [0.055s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.015s] Initializing temporary storage... [0s] Building reference histograms... [0.024s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.029s] Building query seed array... [0.021s] Computing hash join... [0.01s] Masking low complexity seeds... [0.015s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.025s] Building query seed array... [0.031s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.024s] Computing hash join... [0.01s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.025s] Computing hash join... [0.014s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.028s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.015s] Computing hash join... [0.012s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.014s] Computing hash join... [0.01s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.012s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.021s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.027s] Computing hash join... [0.012s] Masking low complexity seeds... [0.012s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.025s] Building query seed array... [0.028s] Computing hash join... [0.012s] Masking low complexity seeds... [0.014s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.001s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.016s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0.004s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.018s] Computing hash join... [0.009s] Masking low complexity seeds... [0.012s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.013s] Building query seed array... [0.032s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.009s] Building query seed array... [0.029s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.006s] Building query seed array... [0.028s] Computing hash join... [0.008s] Masking low complexity seeds... [0.01s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.012s] Masking low complexity seeds... [0.015s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.026s] Computing hash join... [0.008s] Masking low complexity seeds... [0.008s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.01s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.012s] Masking low complexity seeds... [0.014s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.031s] Computing hash join... [0.003s] Masking low complexity seeds... [0.001s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.039s] Computing hash join... [0.008s] Masking low complexity seeds... [0.012s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.025s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.024s] Computing hash join... [0.01s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.03s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.025s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.024s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.023s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.024s] Computing hash join... [0.014s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.008s] Masking low complexity seeds... [0.012s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.025s] Computing hash join... [0s] Masking low complexity seeds... [0.001s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.021s] Building query seed array... [0.028s] Computing hash join... [0.01s] Masking low complexity seeds... [0.008s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.024s] Building query seed array... [0.027s] Computing hash join... [0.008s] Masking low complexity seeds... [0.019s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.012s] Masking low complexity seeds... [0.019s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.018s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.012s] Building query seed array... [0.011s] Computing hash join... [0.01s] Masking low complexity seeds... [0.012s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.012s] Building query seed array... [0.013s] Computing hash join... [0.014s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.018s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.016s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.032s] Computing hash join... [0.01s] Masking low complexity seeds... [0.015s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.021s] Computing hash join... [0.01s] Masking low complexity seeds... [0.02s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0.012s] Masking low complexity seeds... [0.007s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.028s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.028s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.004s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.034s] Building query seed array... [0.022s] Computing hash join... [0.005s] Masking low complexity seeds... [0.007s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.018s] Computing hash join... [0.003s] Masking low complexity seeds... [0.004s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.023s] Computing hash join... [0.016s] Masking low complexity seeds... [0.011s] Searching alignments... [0.017s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.031s] Sorting trace points... [0s] Computing alignments... [0.012s] Deallocating buffers... [0s] Loading trace points... [0s] [0.046s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 5.498s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/L.faa.diamond --query test/M.faa --out /tmp/tmp.5la2s1Wo43/M.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.046s] Algorithm: Double-indexed Building query histograms... [0.031s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.015s] Initializing temporary storage... [0s] Building reference histograms... [0.023s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.017s] Building query seed array... [0.027s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.02s] Computing hash join... [0.01s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.02s] Building query seed array... [0.019s] Computing hash join... [0.012s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.021s] Building query seed array... [0.02s] Computing hash join... [0.008s] Masking low complexity seeds... [0.007s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.011s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.01s] Building query seed array... [0.031s] Computing hash join... [0.008s] Masking low complexity seeds... [0.003s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.017s] Building query seed array... [0.019s] Computing hash join... [0.02s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.024s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.021s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.008s] Computing hash join... [0.008s] Masking low complexity seeds... [0.015s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.019s] Computing hash join... [0.008s] Masking low complexity seeds... [0.007s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.019s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.02s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.028s] Computing hash join... [0.007s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.024s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.014s] Building query seed array... [0.021s] Computing hash join... [0.005s] Masking low complexity seeds... [0s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.012s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.02s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.008s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.027s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.012s] Masking low complexity seeds... [0.007s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.014s] Building query seed array... [0.024s] Computing hash join... [0.01s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.02s] Computing hash join... [0.01s] Masking low complexity seeds... [0.013s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.024s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.012s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.024s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.01s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.012s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.017s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.004s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.024s] Computing hash join... [0.014s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.007s] Computing hash join... [0.012s] Masking low complexity seeds... [0.015s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.024s] Computing hash join... [0.015s] Masking low complexity seeds... [0.008s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.031s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.027s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.005s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0.011s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.034s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.016s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.025s] Building query seed array... [0.015s] Computing hash join... [0.006s] Masking low complexity seeds... [0.003s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.007s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.035s] Computing hash join... [0.015s] Masking low complexity seeds... [0.008s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.012s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.011s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.028s] Computing hash join... [0.016s] Masking low complexity seeds... [0.01s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.025s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.014s] Building query seed array... [0.008s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.024s] Computing hash join... [0.019s] Masking low complexity seeds... [0.011s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.011s] Computing hash join... [0.003s] Masking low complexity seeds... [0.007s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.02s] Computing hash join... [0.014s] Masking low complexity seeds... [0.011s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.021s] Building query seed array... [0.008s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.017s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.319s] Sorting trace points... [0s] Computing alignments... [0.405s] Deallocating buffers... [0s] Loading trace points... [0s] [0.728s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 5.976s Reported 390 pairwise alignments, 390 HSPs. 39 queries aligned. + diamond blastp --threads 1 --db test/M.faa.diamond --query test/L.faa --out /tmp/tmp.5la2s1Wo43/L.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0.003s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.049s] Algorithm: Double-indexed Building query histograms... [0.035s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.015s] Initializing temporary storage... [0s] Building reference histograms... [0.031s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.03s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.025s] Building query seed array... [0.019s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.007s] Computing hash join... [0s] Masking low complexity seeds... [0.001s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.024s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.008s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.024s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.025s] Computing hash join... [0.01s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.024s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.018s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.02s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.004s] Building query seed array... [0.004s] Computing hash join... [0.002s] Masking low complexity seeds... [0.001s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0.012s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.011s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.031s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.012s] Computing hash join... [0.003s] Masking low complexity seeds... [0.012s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.008s] Building query seed array... [0.02s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.024s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.01s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.011s] Computing hash join... [0.007s] Masking low complexity seeds... [0.005s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.001s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.02s] Building query seed array... [0.007s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.024s] Computing hash join... [0.014s] Masking low complexity seeds... [0.012s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.02s] Building query seed array... [0.022s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.024s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.008s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.024s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.028s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.024s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.028s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0.008s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.024s] Building query seed array... [0.024s] Computing hash join... [0.01s] Masking low complexity seeds... [0.014s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.024s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.016s] Building query seed array... [0.011s] Computing hash join... [0.012s] Masking low complexity seeds... [0.014s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0.007s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.016s] Building query seed array... [0.027s] Computing hash join... [0.012s] Masking low complexity seeds... [0.015s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.024s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.001s] Building query seed array... [0.024s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.018s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.022s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.025s] Building query seed array... [0.02s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.024s] Computing hash join... [0.01s] Masking low complexity seeds... [0.015s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.024s] Computing hash join... [0.015s] Masking low complexity seeds... [0.008s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.031s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.007s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.028s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.031s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.024s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.017s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.362s] Sorting trace points... [0s] Computing alignments... [0.411s] Deallocating buffers... [0s] Loading trace points... [0s] [0.775s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 6.059s Reported 390 pairwise alignments, 390 HSPs. 40 queries aligned. + diamond blastp --ignore-warnings --threads 1 --db test/L.faa.diamond --query test/C2.faa --out /tmp/tmp.5la2s1Wo43/C2.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0.004s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.013s] Algorithm: Double-indexed Building query histograms... [0.021s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.015s] Initializing temporary storage... [0s] Building reference histograms... [0.039s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.028s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.029s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.011s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.016s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.024s] Building query seed array... [0.022s] Computing hash join... [0.019s] Masking low complexity seeds... [0.007s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.024s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.025s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.008s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.025s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.019s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.028s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.013s] Building query seed array... [0.015s] Computing hash join... [0.012s] Masking low complexity seeds... [0.012s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.019s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.022s] Computing hash join... [0.012s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.016s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.012s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.008s] Building query seed array... [0.027s] Computing hash join... [0.01s] Masking low complexity seeds... [0.013s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.028s] Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.026s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.025s] Building query seed array... [0.032s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.008s] Masking low complexity seeds... [0.012s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.024s] Computing hash join... [0.007s] Masking low complexity seeds... [0.012s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.015s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.013s] Building query seed array... [0.015s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.029s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.027s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.024s] Building query seed array... [0.025s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.014s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.015s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.01s] Building query seed array... [0s] Computing hash join... [0.011s] Masking low complexity seeds... [0.019s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.007s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.009s] Masking low complexity seeds... [0.001s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0.007s] Masking low complexity seeds... [0.015s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.031s] Computing hash join... [0.012s] Masking low complexity seeds... [0.007s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.017s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.04s] Sorting trace points... [0s] Computing alignments... [0.019s] Deallocating buffers... [0.007s] Loading trace points... [0s] [0.068s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 5.782s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/L.faa --out /tmp/tmp.5la2s1Wo43/L.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.05s] Algorithm: Double-indexed Building query histograms... [0.005s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.002s] Initializing temporary storage... [0s] Building reference histograms... [0.009s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.024s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.024s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.024s] Building query seed array... [0.02s] Computing hash join... [0.018s] Masking low complexity seeds... [0.012s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.011s] Computing hash join... [0s] Masking low complexity seeds... [0.012s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.018s] Building query seed array... [0.027s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.023s] Masking low complexity seeds... [0.012s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.008s] Masking low complexity seeds... [0.006s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.019s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.016s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.026s] Computing hash join... [0.005s] Masking low complexity seeds... [0.015s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.02s] Building query seed array... [0.022s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.028s] Building query seed array... [0.02s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.011s] Building query seed array... [0.004s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.024s] Computing hash join... [0.015s] Masking low complexity seeds... [0.01s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.025s] Building query seed array... [0.029s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.02s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.008s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.02s] Building query seed array... [0.016s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.015s] Building query seed array... [0.016s] Computing hash join... [0.011s] Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.02s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.015s] Building query seed array... [0.007s] Computing hash join... [0s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.007s] Building query seed array... [0.008s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.012s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.024s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.022s] Computing hash join... [0.017s] Masking low complexity seeds... [0.005s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.006s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.018s] Computing hash join... [0.006s] Masking low complexity seeds... [0.009s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.018s] Building query seed array... [0.025s] Computing hash join... [0.013s] Masking low complexity seeds... [0.011s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.021s] Building query seed array... [0.024s] Computing hash join... [0.009s] Masking low complexity seeds... [0.003s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.018s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.007s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.016s] Building query seed array... [0.027s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.02s] Computing hash join... [0.012s] Masking low complexity seeds... [0.007s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.02s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.031s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.028s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.024s] Building query seed array... [0.028s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.016s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.024s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.04s] Sorting trace points... [0s] Computing alignments... [0.009s] Deallocating buffers... [0s] Loading trace points... [0s] [0.05s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 4.974s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --ignore-warnings --threads 1 --db test/M.faa.diamond --query test/C2.faa --out /tmp/tmp.5la2s1Wo43/C2.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.008s] Algorithm: Double-indexed Building query histograms... [0.026s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.011s] Initializing temporary storage... [0s] Building reference histograms... [0.031s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.031s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.02s] Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.02s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.011s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.019s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.024s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.028s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0.02s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.02s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.024s] Building query seed array... [0.023s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.024s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.004s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.015s] Building query seed array... [0.011s] Computing hash join... [0.004s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.016s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.016s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.024s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.007s] Computing hash join... [0.004s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.015s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.007s] Building query seed array... [0.012s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0s] Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.007s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.007s] Computing hash join... [0.003s] Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.031s] Computing hash join... [0.008s] Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.016s] Building query seed array... [0.023s] Computing hash join... [0.012s] Masking low complexity seeds... [0.008s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.011s] Computing hash join... [0.004s] Masking low complexity seeds... [0.004s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.019s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.02s] Building query seed array... [0.019s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.024s] Computing hash join... [0.015s] Masking low complexity seeds... [0.003s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.005s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.01s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.028s] Building query seed array... [0.007s] Computing hash join... [0.011s] Masking low complexity seeds... [0.005s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.001s] Building query seed array... [0.016s] Computing hash join... [0.003s] Masking low complexity seeds... [0.004s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.011s] Building query seed array... [0.011s] Computing hash join... [0.004s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.022s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.027s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.02s] Building query seed array... [0.023s] Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.02s] Building query seed array... [0.027s] Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.024s] Building query seed array... [0.018s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.024s] Building query seed array... [0.043s] Computing hash join... [0.016s] Masking low complexity seeds... [0.014s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.022s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.003s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.028s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.034s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.027s] Computing hash join... [0.007s] Masking low complexity seeds... [0.015s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.018s] Building query seed array... [0.027s] Computing hash join... [0.016s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.012s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.011s] Building query seed array... [0.006s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.001s] Building query seed array... [0.015s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.029s] Computing hash join... [0.012s] Masking low complexity seeds... [0.012s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.008s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.028s] Building query seed array... [0.027s] Computing hash join... [0.008s] Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.026s] Sorting trace points... [0s] Computing alignments... [0.015s] Deallocating buffers... [0.007s] Loading trace points... [0s] [0.051s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 5.03s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/M.faa --out /tmp/tmp.5la2s1Wo43/M.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0.003s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] Masking queries... [0.055s] Algorithm: Double-indexed Building query histograms... [0.035s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.015s] Initializing temporary storage... [0s] Building reference histograms... [0.031s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.004s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.028s] Building query seed array... [0.024s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.036s] Building query seed array... [0.035s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. Building reference seed array... [0.028s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.034s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.024s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.024s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.015s] Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.015s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.027s] Computing hash join... [0.031s] Masking low complexity seeds... [0.008s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.027s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.027s] Building query seed array... [0.024s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.028s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.028s] Building query seed array... [0.03s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.014s] Masking low complexity seeds... [0.015s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. Building reference seed array... [0.018s] Building query seed array... [0.028s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.029s] Building query seed array... [0.024s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.012s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. Building reference seed array... [0.033s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.012s] Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.026s] Building query seed array... [0.031s] Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.016s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.01s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.027s] Building query seed array... [0.03s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.019s] Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.014s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. Building reference seed array... [0.024s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.024s] Computing hash join... [0.023s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.02s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.033s] Building query seed array... [0.015s] Computing hash join... [0.011s] Masking low complexity seeds... [0s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. Building reference seed array... [0.011s] Building query seed array... [0.012s] Computing hash join... [0.011s] Masking low complexity seeds... [0.023s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0.019s] Building query seed array... [0.02s] Computing hash join... [0.014s] Masking low complexity seeds... [0.027s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.03s] Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. Building reference seed array... [0.027s] Building query seed array... [0.035s] Computing hash join... [0.015s] Masking low complexity seeds... [0.019s] Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.024s] Building query seed array... [0.031s] Computing hash join... [0.007s] Masking low complexity seeds... [0.015s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.03s] Building query seed array... [0.026s] Computing hash join... [0.017s] Masking low complexity seeds... [0.019s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.021s] Computing hash join... [0.014s] Masking low complexity seeds... [0.019s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.024s] Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.019s] Masking low complexity seeds... [0.008s] Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0.023s] Building query seed array... [0.043s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.023s] Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.024s] Building query seed array... [0.004s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.012s] Building query seed array... [0.015s] Computing hash join... [0.012s] Masking low complexity seeds... [0.018s] Searching alignments... [0.009s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.042s] Sorting trace points... [0s] Computing alignments... [0.015s] Deallocating buffers... [0.004s] Loading trace points... [0s] [0.063s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] Total time = 6.389s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. + rm -rf /tmp/tmp.5la2s1Wo43 make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/diamond-aligner/ cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/diamond-aligner-2.1.9/debian/diamond-aligner AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/diamond-aligner-2.1.9 -B/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/diamond-aligner-2.1.9/debian/diamond-aligner/usr/bin/diamond make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9' dh_compress --exclude=.pdf make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9' dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'diamond-aligner-dbgsym' in '../diamond-aligner-dbgsym_2.1.9-1_arm64.deb'. dpkg-deb: building package 'diamond-aligner' in '../diamond-aligner_2.1.9-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../diamond-aligner_2.1.9-1_arm64.buildinfo dpkg-genchanges --build=binary -O../diamond-aligner_2.1.9-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3249741/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3249741/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3249741 and its subdirectories I: Current time: Fri Oct 31 02:41:59 +14 2025 I: pbuilder-time-stamp: 1761828119 + false + set +x Thu Oct 30 12:41:59 UTC 2025 I: Signing ./b2/diamond-aligner_2.1.9-1_arm64.buildinfo as diamond-aligner_2.1.9-1_arm64.buildinfo.asc Thu Oct 30 12:41:59 UTC 2025 I: Signed ./b2/diamond-aligner_2.1.9-1_arm64.buildinfo as ./b2/diamond-aligner_2.1.9-1_arm64.buildinfo.asc Thu Oct 30 12:42:00 UTC 2025 - build #2 for diamond-aligner/unstable/arm64 on codethink01-arm64 done. Starting cleanup. All cleanup done. Thu Oct 30 12:42:00 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-bMmuV4EK, removing. /srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq: total 676 drwxr-xr-x 2 jenkins jenkins 4096 Sep 27 06:10 b1 drwxr-xr-x 2 jenkins jenkins 4096 Sep 27 06:19 b2 -rw-r--r-- 1 jenkins jenkins 2199 Feb 7 2024 diamond-aligner_2.1.9-1.dsc -rw------- 1 jenkins jenkins 674019 Sep 27 06:10 rbuildlog.Q3qctgr /srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq/b1: total 41636 -rw-r--r-- 1 jenkins jenkins 670354 Sep 27 06:10 build.log -rw-r--r-- 1 jenkins jenkins 35484716 Sep 27 06:10 diamond-aligner-dbgsym_2.1.9-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 129068 Sep 27 06:10 diamond-aligner_2.1.9-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2199 Sep 27 06:10 diamond-aligner_2.1.9-1.dsc -rw-r--r-- 1 jenkins jenkins 5940 Sep 27 06:10 diamond-aligner_2.1.9-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 6822 Sep 27 06:10 diamond-aligner_2.1.9-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1428 Sep 27 06:10 diamond-aligner_2.1.9-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 1935264 Sep 27 06:10 diamond-aligner_2.1.9-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 1543 Sep 27 06:10 diamond-aligner_2.1.9-1_source.changes -rw-r--r-- 1 jenkins jenkins 4309956 Sep 27 06:10 diamond-aligner_2.1.9.orig.tar.xz /srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq/b2: total 41576 -rw-r--r-- 1 jenkins jenkins 673102 Sep 27 06:19 build.log -rw-r--r-- 1 jenkins jenkins 35484716 Sep 27 06:19 diamond-aligner-dbgsym_2.1.9-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 129068 Sep 27 06:19 diamond-aligner_2.1.9-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2199 Sep 27 06:19 diamond-aligner_2.1.9-1.dsc -rw-r--r-- 1 jenkins jenkins 5940 Sep 27 06:19 diamond-aligner_2.1.9-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 6822 Sep 27 06:19 diamond-aligner_2.1.9-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1428 Sep 27 06:19 diamond-aligner_2.1.9-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 1935264 Sep 27 06:19 diamond-aligner_2.1.9-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 1543 Sep 27 06:19 diamond-aligner_2.1.9-1_source.changes -rw-r--r-- 1 jenkins jenkins 4309956 Sep 27 06:19 diamond-aligner_2.1.9.orig.tar.xz Fri Sep 27 06:19:03 UTC 2024 I: Deleting $TMPDIR on codethink01-arm64.debian.net. Fri Sep 27 06:19:04 UTC 2024 I: diamond-aligner_2.1.9-1_arm64.changes: Format: 1.8 Date: Wed, 07 Feb 2024 11:17:49 +0100 Source: diamond-aligner Binary: diamond-aligner diamond-aligner-dbgsym Architecture: arm64 Version: 2.1.9-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: diamond-aligner - accelerated BLAST compatible local sequence aligner Changes: diamond-aligner (2.1.9-1) unstable; urgency=medium . * New upstream version Checksums-Sha1: c3125aa017c6fb8c192441d444f79d325ef5e1d2 35484716 diamond-aligner-dbgsym_2.1.9-1_arm64.deb 36bab26c46578059f148c33686993944fc2f6213 5940 diamond-aligner_2.1.9-1_arm64.buildinfo b23efd1c4e3af24206af4ccafc8b39ff0b23fefb 1935264 diamond-aligner_2.1.9-1_arm64.deb Checksums-Sha256: cdfd25c9cb3052f6080ce17ee922fa28ee6f3cc5de9e9bf82a091a151d45e15f 35484716 diamond-aligner-dbgsym_2.1.9-1_arm64.deb a72a0de000180232ab0ae1c37f867a7d0660169b735f33c9ba67edade1f0afb2 5940 diamond-aligner_2.1.9-1_arm64.buildinfo 61eb1467ae29ab9118d198269a277c1e52871cfebd9982ffa4d2ec88b5beaa22 1935264 diamond-aligner_2.1.9-1_arm64.deb Files: 0e445629b89d3b6dae20ebc633c21a22 35484716 debug optional diamond-aligner-dbgsym_2.1.9-1_arm64.deb bb07d076fa65cc63d0dd0e38371c9011 5940 science optional diamond-aligner_2.1.9-1_arm64.buildinfo 268b3fc1be1e09a1363e683dbae48bcc 1935264 science optional diamond-aligner_2.1.9-1_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/diamond-aligner_2.1.9-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/diamond-aligner_2.1.9-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/diamond-aligner_2.1.9-1.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/diamond-aligner_2.1.9-1.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/arm64/diamond-aligner_2.1.9-1_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/diamond-aligner_2.1.9-1.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-09-27 06:10:29.007968530 +0000 +++ b2/build.log 2024-09-27 06:19:02.690145781 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Sep 26 18:03:32 -12 2024 -I: pbuilder-time-stamp: 1727417012 +I: Current time: Fri Oct 31 02:33:40 +14 2025 +I: pbuilder-time-stamp: 1761827620 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: unpacking diamond-aligner_2.1.9-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/870888/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3249741/tmp/hooks/D01_modify_environment starting +debug: Running on codethink01-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 30 12:33 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3249741/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3249741/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='699c8dfba7d74e83ba4f59bbebbe5707' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='870888' - PS1='# ' - PS2='> ' + INVOCATION_ID=1d36eb72fade43408b7134ae53b41f18 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3249741 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq/pbuilderrc_w79p --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq/b1 --logfile b1/build.log diamond-aligner_2.1.9-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq/pbuilderrc_Bhk2 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq/b2 --logfile b2/build.log diamond-aligner_2.1.9-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink02-arm64 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/870888/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3249741/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -167,7 +199,7 @@ Get: 52 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB] -Fetched 35.5 MB in 1s (67.7 MB/s) +Fetched 35.5 MB in 0s (101 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19897 files and directories currently installed.) @@ -398,7 +430,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/diamond-aligner-2.1.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../diamond-aligner_2.1.9-1_source.changes +I: user script /srv/workspace/pbuilder/3249741/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3249741/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/diamond-aligner-2.1.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../diamond-aligner_2.1.9-1_source.changes dpkg-buildpackage: info: source package diamond-aligner dpkg-buildpackage: info: source version 2.1.9-1 dpkg-buildpackage: info: source distribution unstable @@ -454,7 +490,7 @@ -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE --- Configuring done (4.4s) +-- Configuring done (4.1s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -484,57 +520,63 @@ make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' cd /build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/diamond-aligner-2.1.9 /build/reproducible-path/diamond-aligner-2.1.9 /build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu/CMakeFiles/arch_neon.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' -make -f CMakeFiles/arch_neon.dir/build.make CMakeFiles/arch_neon.dir/build +make -f CMakeFiles/arch_generic.dir/build.make CMakeFiles/arch_generic.dir/build make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' -make -f CMakeFiles/arch_generic.dir/build.make CMakeFiles/arch_generic.dir/build +make -f CMakeFiles/arch_neon.dir/build.make CMakeFiles/arch_neon.dir/build make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' -[ 1%] Building CXX object CMakeFiles/arch_neon.dir/src/dp/swipe/banded_3frame_swipe.cpp.o -[ 1%] Building CXX object CMakeFiles/arch_neon.dir/src/search/stage1_2.cpp.o -/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time 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-ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_NEON -DARCH_ID=4 -D__ARM_NEON -D__aarch64__ -DEigen=Eigen_NEON -MD -MT CMakeFiles/arch_neon.dir/src/dp/scan_diags.cpp.o -MF CMakeFiles/arch_neon.dir/src/dp/scan_diags.cpp.o.d -o CMakeFiles/arch_neon.dir/src/dp/scan_diags.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/scan_diags.cpp +/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/ungapped_simd.cpp +[ 7%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/pfscan/pfscan.cpp.o +/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/pfscan/pfscan.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/pfscan/pfscan.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/pfscan/pfscan.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/pfscan/pfscan.cpp +[ 7%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o +/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/anchored_wrapper.cpp +[ 8%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o +/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/score_profile.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/cell_update.h:23, from /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:34: -/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h: In instantiation of ‘void set_channel(ForwardCell&, int, typename ARCH_GENERIC::ScoreTraits::Score) [with Sv = int; typename ARCH_GENERIC::ScoreTraits::Score = int]’: -/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:76:15: required from ‘void DP::Swipe::ARCH_GENERIC::Matrix::set_zero(int) [with Sv = ForwardCell]’ +/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h: In instantiation of ‘void set_channel(ForwardCell&, int, typename ARCH_NEON::ScoreTraits::Score) [with Sv = int; typename ARCH_NEON::ScoreTraits::Score = int]’: +/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:76:15: required from ‘void DP::Swipe::ARCH_NEON::Matrix::set_zero(int) [with Sv = ForwardCell]’ 76 | set_channel(hgap_[i], c, z); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ -/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:232:17: required from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, ForwardCell, VectorIdMask >]’ +/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:232:17: required from ‘std::__cxx11::list DP::Swipe::ARCH_NEON::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, ForwardCell, VectorIdMask >]’ 232 | dp.set_zero(c); | ~~~~~~~~~~~^~~ -/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:141:61: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::dispatch_swipe(It, It, std::atomic*, Cbs, std::vector&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, ForwardCell, VectorIdMask >]’ +/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:141:61: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::dispatch_swipe(It, It, std::atomic*, Cbs, std::vector&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, ForwardCell, VectorIdMask >]’ 141 | return ::DP::Swipe::DISPATCH_ARCH::swipe(begin, end, next, composition_bias, overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:154:44: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::dispatch_swipe(It, It, std::atomic*, std::vector&, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, ForwardCell, VectorIdMask >]’ +/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:154:44: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::dispatch_swipe(It, It, std::atomic*, std::vector&, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, ForwardCell, VectorIdMask >]’ 154 | return dispatch_swipe(begin, end, next, NoCBS(), overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:177:38: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::dispatch_swipe(It, It, std::atomic*, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ +/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:177:38: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::dispatch_swipe(It, It, std::atomic*, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ 177 | return dispatch_swipe(begin, end, next, overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:277:32: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::swipe_threads(It, It, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ +/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:277:32: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::swipe_threads(It, It, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ 277 | return dispatch_swipe(begin, end, &next, overflow, round, bin, p); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:341:35: required from ‘std::pair, std::vector > DP::BandedSwipe::ARCH_GENERIC::swipe_bin(unsigned int, It, It, int, DP::Params&) [with It = __gnu_cxx::__normal_iterator >]’ +/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:341:35: required from ‘std::pair, std::vector > DP::BandedSwipe::ARCH_NEON::swipe_bin(unsigned int, It, It, int, DP::Params&) [with It = __gnu_cxx::__normal_iterator >]’ 341 | out = swipe_threads(begin, end, overflow, round, bin, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:397:21: required from here @@ -543,26 +585,26 @@ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h:100:21: warning: casting ‘ForwardCell’ to ‘int&’ does not use ‘ForwardCell::operator int32_t() const’ [-Wcast-user-defined] 100 | set_channel((Sv&)v, i, x); | ^~~~~~ -/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h: In instantiation of ‘void set_channel(BackwardCell&, int, typename ARCH_GENERIC::ScoreTraits::Score) [with Sv = int; typename ARCH_GENERIC::ScoreTraits::Score = int]’: -/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:76:15: required from ‘void DP::Swipe::ARCH_GENERIC::Matrix::set_zero(int) [with Sv = BackwardCell]’ +/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h: In instantiation of ‘void set_channel(BackwardCell&, int, typename ARCH_NEON::ScoreTraits::Score) [with Sv = int; typename ARCH_NEON::ScoreTraits::Score = int]’: +/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:76:15: required from ‘void DP::Swipe::ARCH_NEON::Matrix::set_zero(int) [with Sv = BackwardCell]’ 76 | set_channel(hgap_[i], c, z); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ -/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:232:17: required from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, BackwardCell, VectorIdMask >]’ +/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:232:17: required from ‘std::__cxx11::list DP::Swipe::ARCH_NEON::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, BackwardCell, VectorIdMask >]’ 232 | dp.set_zero(c); | ~~~~~~~~~~~^~~ -/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:141:61: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::dispatch_swipe(It, It, std::atomic*, Cbs, std::vector&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, BackwardCell, VectorIdMask >]’ +/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:141:61: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::dispatch_swipe(It, It, std::atomic*, Cbs, std::vector&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, BackwardCell, VectorIdMask >]’ 141 | return ::DP::Swipe::DISPATCH_ARCH::swipe(begin, end, next, composition_bias, overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:154:44: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::dispatch_swipe(It, It, std::atomic*, std::vector&, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, BackwardCell, VectorIdMask >]’ +/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:154:44: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::dispatch_swipe(It, It, std::atomic*, std::vector&, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, BackwardCell, VectorIdMask >]’ 154 | return dispatch_swipe(begin, end, next, NoCBS(), overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:187:38: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::dispatch_swipe(It, It, std::atomic*, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ +/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:187:38: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::dispatch_swipe(It, It, std::atomic*, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ 187 | return dispatch_swipe(begin, end, next, overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:277:32: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::swipe_threads(It, It, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ +/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:277:32: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::swipe_threads(It, It, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ 277 | return dispatch_swipe(begin, end, &next, overflow, round, bin, p); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:341:35: required from ‘std::pair, std::vector > DP::BandedSwipe::ARCH_GENERIC::swipe_bin(unsigned int, It, It, int, DP::Params&) [with It = __gnu_cxx::__normal_iterator >]’ +/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:341:35: required from ‘std::pair, std::vector > DP::BandedSwipe::ARCH_NEON::swipe_bin(unsigned int, It, It, int, DP::Params&) [with It = __gnu_cxx::__normal_iterator >]’ 341 | out = swipe_threads(begin, end, overflow, round, bin, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:397:21: required from here @@ -571,32 +613,28 @@ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h:158:21: warning: casting ‘BackwardCell’ to ‘int&’ does not use ‘BackwardCell::operator int32_t() const’ [-Wcast-user-defined] 158 | set_channel((Sv&)v, i, x); | ^~~~~~ -[ 6%] Building CXX object CMakeFiles/arch_neon.dir/src/dp/pfscan/pfscan.cpp.o -/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_NEON -DARCH_ID=4 -D__ARM_NEON -D__aarch64__ -DEigen=Eigen_NEON -MD -MT CMakeFiles/arch_neon.dir/src/dp/pfscan/pfscan.cpp.o -MF CMakeFiles/arch_neon.dir/src/dp/pfscan/pfscan.cpp.o.d -o CMakeFiles/arch_neon.dir/src/dp/pfscan/pfscan.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/pfscan/pfscan.cpp -[ 7%] Building CXX object CMakeFiles/arch_neon.dir/src/dp/swipe/anchored_wrapper.cpp.o -/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_NEON -DARCH_ID=4 -D__ARM_NEON -D__aarch64__ -DEigen=Eigen_NEON -MD -MT CMakeFiles/arch_neon.dir/src/dp/swipe/anchored_wrapper.cpp.o -MF CMakeFiles/arch_neon.dir/src/dp/swipe/anchored_wrapper.cpp.o.d -o CMakeFiles/arch_neon.dir/src/dp/swipe/anchored_wrapper.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/anchored_wrapper.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/cell_update.h:23, from /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:34: -/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h: In instantiation of ‘void set_channel(ForwardCell&, int, typename ARCH_NEON::ScoreTraits::Score) [with Sv = int; typename ARCH_NEON::ScoreTraits::Score = int]’: -/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:76:15: required from ‘void DP::Swipe::ARCH_NEON::Matrix::set_zero(int) [with Sv = ForwardCell]’ +/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h: In instantiation of ‘void set_channel(ForwardCell&, int, typename ARCH_GENERIC::ScoreTraits::Score) [with Sv = int; typename ARCH_GENERIC::ScoreTraits::Score = int]’: +/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:76:15: required from ‘void DP::Swipe::ARCH_GENERIC::Matrix::set_zero(int) [with Sv = ForwardCell]’ 76 | set_channel(hgap_[i], c, z); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ -/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:232:17: required from ‘std::__cxx11::list DP::Swipe::ARCH_NEON::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, ForwardCell, VectorIdMask >]’ +/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:232:17: required from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, ForwardCell, VectorIdMask >]’ 232 | dp.set_zero(c); | ~~~~~~~~~~~^~~ -/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:141:61: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::dispatch_swipe(It, It, std::atomic*, Cbs, std::vector&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, ForwardCell, VectorIdMask >]’ +/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:141:61: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::dispatch_swipe(It, It, std::atomic*, Cbs, std::vector&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, ForwardCell, VectorIdMask >]’ 141 | return ::DP::Swipe::DISPATCH_ARCH::swipe(begin, end, next, composition_bias, overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:154:44: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::dispatch_swipe(It, It, std::atomic*, std::vector&, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, ForwardCell, VectorIdMask >]’ +/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:154:44: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::dispatch_swipe(It, It, std::atomic*, std::vector&, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, ForwardCell, VectorIdMask >]’ 154 | return dispatch_swipe(begin, end, next, NoCBS(), overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:177:38: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::dispatch_swipe(It, It, std::atomic*, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ +/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:177:38: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::dispatch_swipe(It, It, std::atomic*, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ 177 | return dispatch_swipe(begin, end, next, overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:277:32: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::swipe_threads(It, It, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ +/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:277:32: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::swipe_threads(It, It, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ 277 | return dispatch_swipe(begin, end, &next, overflow, round, bin, p); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:341:35: required from ‘std::pair, std::vector > DP::BandedSwipe::ARCH_NEON::swipe_bin(unsigned int, It, It, int, DP::Params&) [with It = __gnu_cxx::__normal_iterator >]’ +/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:341:35: required from ‘std::pair, std::vector > DP::BandedSwipe::ARCH_GENERIC::swipe_bin(unsigned int, It, It, int, DP::Params&) [with It = __gnu_cxx::__normal_iterator >]’ 341 | out = swipe_threads(begin, end, overflow, round, bin, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:397:21: required from here @@ -605,26 +643,26 @@ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h:100:21: warning: casting ‘ForwardCell’ to ‘int&’ does not use ‘ForwardCell::operator int32_t() const’ [-Wcast-user-defined] 100 | set_channel((Sv&)v, i, x); | ^~~~~~ -/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h: In instantiation of ‘void set_channel(BackwardCell&, int, typename ARCH_NEON::ScoreTraits::Score) [with Sv = int; typename ARCH_NEON::ScoreTraits::Score = int]’: -/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:76:15: required from ‘void DP::Swipe::ARCH_NEON::Matrix::set_zero(int) [with Sv = BackwardCell]’ +/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h: In instantiation of ‘void set_channel(BackwardCell&, int, typename ARCH_GENERIC::ScoreTraits::Score) [with Sv = int; typename ARCH_GENERIC::ScoreTraits::Score = int]’: +/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:76:15: required from ‘void DP::Swipe::ARCH_GENERIC::Matrix::set_zero(int) [with Sv = BackwardCell]’ 76 | set_channel(hgap_[i], c, z); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ -/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:232:17: required from ‘std::__cxx11::list DP::Swipe::ARCH_NEON::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, BackwardCell, VectorIdMask >]’ +/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:232:17: required from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, BackwardCell, VectorIdMask >]’ 232 | dp.set_zero(c); | ~~~~~~~~~~~^~~ -/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:141:61: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::dispatch_swipe(It, It, std::atomic*, Cbs, std::vector&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, BackwardCell, VectorIdMask >]’ +/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:141:61: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::dispatch_swipe(It, It, std::atomic*, Cbs, std::vector&, DP::Params&) [with Sv = int; Cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, BackwardCell, VectorIdMask >]’ 141 | return ::DP::Swipe::DISPATCH_ARCH::swipe(begin, end, next, composition_bias, overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:154:44: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::dispatch_swipe(It, It, std::atomic*, std::vector&, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, BackwardCell, VectorIdMask >]’ +/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:154:44: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::dispatch_swipe(It, It, std::atomic*, std::vector&, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, BackwardCell, VectorIdMask >]’ 154 | return dispatch_swipe(begin, end, next, NoCBS(), overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:187:38: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::dispatch_swipe(It, It, std::atomic*, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ +/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:187:38: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::dispatch_swipe(It, It, std::atomic*, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ 187 | return dispatch_swipe(begin, end, next, overflow, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:277:32: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_NEON::swipe_threads(It, It, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ +/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:277:32: required from ‘std::__cxx11::list DP::BandedSwipe::ARCH_GENERIC::swipe_threads(It, It, std::vector&, int, int, DP::Params&) [with Sv = int; It = __gnu_cxx::__normal_iterator >]’ 277 | return dispatch_swipe(begin, end, &next, overflow, round, bin, p); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:341:35: required from ‘std::pair, std::vector > DP::BandedSwipe::ARCH_NEON::swipe_bin(unsigned int, It, It, int, DP::Params&) [with It = __gnu_cxx::__normal_iterator >]’ +/build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:341:35: required from ‘std::pair, std::vector > DP::BandedSwipe::ARCH_GENERIC::swipe_bin(unsigned int, It, It, int, DP::Params&) [with It = __gnu_cxx::__normal_iterator >]’ 341 | out = swipe_threads(begin, end, overflow, round, bin, p); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:397:21: required from here @@ -633,56 +671,54 @@ /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/stat_cell.h:158:21: warning: casting ‘BackwardCell’ to ‘int&’ does not use ‘BackwardCell::operator int32_t() const’ [-Wcast-user-defined] 158 | set_channel((Sv&)v, i, x); | ^~~~~~ -[ 8%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o -/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/scan_diags.cpp -[ 8%] Building CXX object CMakeFiles/arch_neon.dir/src/dp/score_profile.cpp.o +[ 8%] Building CXX object CMakeFiles/arch_neon.dir/src/dp/scan_diags.cpp.o +/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_NEON -DARCH_ID=4 -D__ARM_NEON -D__aarch64__ -DEigen=Eigen_NEON -MD -MT CMakeFiles/arch_neon.dir/src/dp/scan_diags.cpp.o -MF CMakeFiles/arch_neon.dir/src/dp/scan_diags.cpp.o.d -o CMakeFiles/arch_neon.dir/src/dp/scan_diags.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/scan_diags.cpp +[ 9%] Building CXX object CMakeFiles/arch_neon.dir/src/dp/ungapped_simd.cpp.o +/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_NEON -DARCH_ID=4 -D__ARM_NEON -D__aarch64__ -DEigen=Eigen_NEON -MD -MT CMakeFiles/arch_neon.dir/src/dp/ungapped_simd.cpp.o -MF CMakeFiles/arch_neon.dir/src/dp/ungapped_simd.cpp.o.d -o CMakeFiles/arch_neon.dir/src/dp/ungapped_simd.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/ungapped_simd.cpp +[ 9%] Building CXX object CMakeFiles/arch_neon.dir/src/dp/pfscan/pfscan.cpp.o +/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_NEON -DARCH_ID=4 -D__ARM_NEON -D__aarch64__ -DEigen=Eigen_NEON -MD -MT CMakeFiles/arch_neon.dir/src/dp/pfscan/pfscan.cpp.o -MF CMakeFiles/arch_neon.dir/src/dp/pfscan/pfscan.cpp.o.d -o CMakeFiles/arch_neon.dir/src/dp/pfscan/pfscan.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/pfscan/pfscan.cpp +[ 10%] Building CXX object CMakeFiles/arch_neon.dir/src/dp/swipe/anchored_wrapper.cpp.o +/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_NEON -DARCH_ID=4 -D__ARM_NEON -D__aarch64__ -DEigen=Eigen_NEON -MD -MT CMakeFiles/arch_neon.dir/src/dp/swipe/anchored_wrapper.cpp.o -MF CMakeFiles/arch_neon.dir/src/dp/swipe/anchored_wrapper.cpp.o.d -o CMakeFiles/arch_neon.dir/src/dp/swipe/anchored_wrapper.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/anchored_wrapper.cpp +[ 10%] Building CXX object CMakeFiles/arch_neon.dir/src/dp/score_profile.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_NEON -DARCH_ID=4 -D__ARM_NEON -D__aarch64__ -DEigen=Eigen_NEON -MD -MT CMakeFiles/arch_neon.dir/src/dp/score_profile.cpp.o -MF CMakeFiles/arch_neon.dir/src/dp/score_profile.cpp.o.d -o CMakeFiles/arch_neon.dir/src/dp/score_profile.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/score_profile.cpp -[ 8%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o -/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/ungapped_simd.cpp -[ 9%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/pfscan/pfscan.cpp.o -/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/pfscan/pfscan.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/pfscan/pfscan.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/pfscan/pfscan.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/pfscan/pfscan.cpp -[ 9%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o -/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/anchored_wrapper.cpp -[ 10%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o -/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/score_profile.cpp In file included from /usr/include/c++/14/list:62, from /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/swipe_wrapper.cpp:22: In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, - inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12: + inlined from ‘DP::Swipe::ARCH_NEON::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, - inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, - inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: + inlined from ‘DP::Swipe::ARCH_NEON::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, + inlined from ‘std::__cxx11::list DP::Swipe::ARCH_NEON::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, - inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, - inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: + inlined from ‘DP::Swipe::ARCH_NEON::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, + inlined from ‘std::__cxx11::list DP::Swipe::ARCH_NEON::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, - inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, - inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: + inlined from ‘DP::Swipe::ARCH_NEON::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, + inlined from ‘std::__cxx11::list DP::Swipe::ARCH_NEON::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, - inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, - inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: + inlined from ‘DP::Swipe::ARCH_NEON::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, + inlined from ‘std::__cxx11::list DP::Swipe::ARCH_NEON::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ @@ -691,39 +727,39 @@ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, - inlined from ‘DP::Swipe::ARCH_NEON::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12: + inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, - inlined from ‘DP::Swipe::ARCH_NEON::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, - inlined from ‘std::__cxx11::list DP::Swipe::ARCH_NEON::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: + inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, + inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, - inlined from ‘DP::Swipe::ARCH_NEON::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, - inlined from ‘std::__cxx11::list DP::Swipe::ARCH_NEON::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: + inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, + inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = StringSetBase::ConstIterator; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, - inlined from ‘DP::Swipe::ARCH_NEON::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, - inlined from ‘std::__cxx11::list DP::Swipe::ARCH_NEON::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: + inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, + inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ In function ‘typename __gnu_cxx::__enable_if::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’, inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:998:21, inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = int*; _Tp = int]’ at /usr/include/c++/14/bits/stl_algobase.h:1029:20, - inlined from ‘DP::Swipe::ARCH_NEON::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, - inlined from ‘std::__cxx11::list DP::Swipe::ARCH_NEON::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: + inlined from ‘DP::Swipe::ARCH_GENERIC::Matrix::Matrix(int, int) [with Sv = int]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_matrix.h:64:12, + inlined from ‘std::__cxx11::list DP::Swipe::ARCH_GENERIC::swipe(It, It, std::atomic*, _cbs, std::vector&, DP::Params&) [with _sv = int; _cbs = DP::NoCBS; It = __gnu_cxx::__normal_iterator >; Cfg = SwipeConfig, int, DummyIdMask >]’ at /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/full_swipe.h:155:9: /usr/include/c++/14/bits/stl_algobase.h:952:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 952 | *__first = __tmp; | ~~~~~~~~~^~~~~~~ @@ -743,8 +779,8 @@ make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' [ 11%] Building CXX object CMakeFiles/diamond.dir/src/run/main.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 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101 | virtual inline void copy ( | ^~~~ +[ 57%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_ioutil.cpp.o +/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/njn_ioutil.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/njn_ioutil.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/njn_ioutil.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_ioutil.cpp [ 58%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstat.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstat.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstat.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstat.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_localmaxstat.cpp +cc1plus: note: unrecognized command-line option 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/build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:39, from /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_localmaxstatutil.cpp:39: /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprob.hpp:110:37: warning: ‘virtual Njn::DynProgProb& Njn::DynProgProb::operator=(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] @@ -993,6 +1027,9 @@ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ +[ 61%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o +/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/stats/hauser_correction.cpp.o -MF CMakeFiles/diamond.dir/src/stats/hauser_correction.cpp.o.d -o CMakeFiles/diamond.dir/src/stats/hauser_correction.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/stats/hauser_correction.cpp [ 74%] Building CXX object CMakeFiles/diamond.dir/src/stats/matrix_adjust.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG 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CMakeFiles/diamond.dir/src/stats/hauser_correction.cpp.o.d -o CMakeFiles/diamond.dir/src/stats/hauser_correction.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/stats/hauser_correction.cpp [ 74%] Building CXX object CMakeFiles/diamond.dir/src/stats/matrix_adjust_eigen.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_NEON -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/stats/matrix_adjust_eigen.cpp.o -MF CMakeFiles/diamond.dir/src/stats/matrix_adjust_eigen.cpp.o.d -o CMakeFiles/diamond.dir/src/stats/matrix_adjust_eigen.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/stats/matrix_adjust_eigen.cpp [ 75%] Building CXX object CMakeFiles/diamond.dir/src/data/index.cpp.o @@ -1151,17 +1187,17 @@ make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9' -cd debian/tests && PATH=/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games sh diamond-calls -+ mktemp -d -+ TESTDIR=/tmp/tmp.J27HjrolZa -+ diamond blastp --threads 1 --db test/C.faa.diamond --query test/E.faa --out /tmp/tmp.J27HjrolZa/E.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive +cd debian/tests && PATH=/build/reproducible-path/diamond-aligner-2.1.9/obj-aarch64-linux-gnu:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path sh diamond-calls +++ mktemp -d ++ TESTDIR=/tmp/tmp.5la2s1Wo43 ++ diamond blastp --threads 1 --db test/C.faa.diamond --query test/E.faa --out /tmp/tmp.5la2s1Wo43/E.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.J27HjrolZa +Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) @@ -1169,471 +1205,471 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.02s] +Masking queries... [0.032s] Algorithm: Double-indexed -Building query histograms... [0.039s] +Building query histograms... [0.046s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.011s] +Masking reference... [0.015s] Initializing temporary storage... [0s] -Building reference histograms... [0.031s] +Building reference histograms... [0.039s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.018s] -Building query seed array... [0.015s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.02s] -Computing hash join... [0.007s] +Building reference seed array... [0.018s] +Building query seed array... [0.027s] +Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.011s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.007s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.02s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.038s] +Building query seed array... [0.031s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.011s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.004s] +Building reference seed array... [0.024s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.016s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.021s] -Building query seed array... [0.008s] +Building reference seed array... [0.023s] +Building query seed array... [0.031s] Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.003s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.011s] -Building query seed array... [0.011s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.012s] +Building query seed array... [0.03s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.016s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.015s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.024s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.013s] +Building query seed array... [0.002s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.004s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0.019s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.013s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.029s] -Building query seed array... [0.007s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Building reference seed array... [0.027s] +Building query seed array... [0.031s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.018s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.005s] +Building reference seed array... [0.034s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.009s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.002s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.021s] -Building query seed array... [0.027s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.003s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.011s] -Building query seed array... [0.015s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.012s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.018s] -Building query seed array... [0.011s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0.004s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] +Building reference seed array... [0.015s] +Building query seed array... [0.027s] +Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.019s] +Building reference seed array... [0.035s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.024s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.012s] +Building reference seed array... [0.03s] +Building query seed array... [0.028s] +Computing hash join... [0.014s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.024s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.011s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.023s] +Building reference seed array... [0.007s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Searching alignments... [0.004s] Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.012s] -Building query seed array... [0.027s] +Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. +Building reference seed array... [0.001s] +Building query seed array... [0.012s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] +Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.029s] +Building query seed array... [0.025s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.013s] +Building reference seed array... [0.026s] +Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.007s] +Building reference seed array... [0.027s] +Building query seed array... [0.02s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.022s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.02s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.014s] +Building reference seed array... [0.03s] +Building query seed array... [0.029s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.001s] +Building reference seed array... [0.005s] +Building query seed array... [0.019s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.011s] -Building query seed array... [0.016s] -Computing hash join... [0.018s] +Building reference seed array... [0.013s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.006s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.03s] -Building query seed array... [0.023s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.014s] +Building reference seed array... [0.025s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.006s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.016s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.034s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.007s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.027s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.016s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.013s] +Building reference seed array... [0.031s] +Building query seed array... [0.035s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.017s] +Building reference seed array... [0.031s] Building query seed array... [0.023s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.011s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.014s] -Building query seed array... [0.004s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.015s] +Building query seed array... [0.019s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.021s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0.001s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.018s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.027s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.014s] -Building query seed array... [0.011s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.007s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.028s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.019s] -Searching alignments... [0.009s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.032s] -Building query seed array... [0.023s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.026s] +Building query seed array... [0.028s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.012s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.022s] -Building query seed array... [0.035s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.016s] +Building reference seed array... [0.03s] +Building query seed array... [0.027s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.031s] -Building query seed array... [0.031s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0.003s] +Building query seed array... [0.01s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.018s] -Building query seed array... [0.024s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.02s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.015s] +Building reference seed array... [0.031s] +Building query seed array... [0.019s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.003s] +Masking low complexity seeds... [0.012s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.015s] -Building query seed array... [0.027s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.031s] +Building reference seed array... [0.026s] +Building query seed array... [0.02s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.009s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.019s] +Building reference seed array... [0.012s] Building query seed array... [0.019s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.005s] -Searching alignments... [0.013s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.025s] +Building query seed array... [0.03s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0.001s] +Masking low complexity seeds... [0s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.019s] +Building query seed array... [0.027s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.02s] -Building query seed array... [0.014s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.021s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.005s] +Building reference seed array... [0.034s] +Building query seed array... [0.016s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.011s] -Building query seed array... [0.023s] +Building reference seed array... [0.017s] +Building query seed array... [0.033s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.002s] -Searching alignments... [0.027s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.019s] -Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.017s] Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.013s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.003s] +Building reference seed array... [0.02s] +Building query seed array... [0.016s] +Computing hash join... [0.001s] +Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.015s] -Building query seed array... [0.005s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.009s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.287s] +Computing alignments... Loading trace points... [0.45s] Sorting trace points... [0s] -Computing alignments... [0.289s] -Deallocating buffers... [0s] +Computing alignments... [0.399s] +Deallocating buffers... [0.007s] Loading trace points... [0s] - [0.578s] + [0.859s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -1643,17 +1679,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 5.047s +Total time = 6.658s Reported 77 pairwise alignments, 77 HSPs. 72 queries aligned. -+ diamond blastp --threads 1 --db test/E.faa.diamond --query test/C.faa --out /tmp/tmp.J27HjrolZa/C.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/E.faa.diamond --query test/C.faa --out /tmp/tmp.5la2s1Wo43/C.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.J27HjrolZa +Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) @@ -1661,471 +1697,471 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.023s] +Masking queries... [0.054s] Algorithm: Double-indexed -Building query histograms... [0.022s] +Building query histograms... [0.035s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.011s] +Masking reference... [0.015s] Initializing temporary storage... [0s] -Building reference histograms... [0.017s] +Building reference histograms... [0.048s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.02s] -Building query seed array... [0.023s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] +Building reference seed array... [0.014s] +Building query seed array... [0.032s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.012s] Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. +Building reference seed array... [0.017s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.025s] -Building query seed array... [0.024s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.028s] -Computing hash join... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] +Building reference seed array... [0.03s] +Building query seed array... [0.028s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.015s] +Masking low complexity seeds... [0.004s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.015s] +Building query seed array... [0.031s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.012s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.024s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.022s] +Building query seed array... [0.019s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.018s] -Building query seed array... [0.02s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.03s] -Building query seed array... [0.011s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.017s] +Building query seed array... [0.031s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.019s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.007s] +Building reference seed array... [0.035s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.015s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.02s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.028s] +Building query seed array... [0.018s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.014s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] +Building reference seed array... [0.03s] +Building query seed array... [0.019s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.018s] -Building query seed array... [0.002s] +Building reference seed array... [0.013s] +Building query seed array... [0.003s] Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.02s] +Building query seed array... [0.027s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.003s] -Building query seed array... [0.008s] -Computing hash join... [0.002s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0.002s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.01s] -Building query seed array... [0.025s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.011s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.011s] +Building reference seed array... [0.026s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.006s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.009s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.008s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.006s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.003s] -Building query seed array... [0.011s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.023s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.012s] -Building query seed array... [0.027s] +Building reference seed array... [0.026s] +Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.008s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. Building reference seed array... [0.026s] -Building query seed array... [0.024s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.026s] +Building reference seed array... [0.03s] Building query seed array... [0.027s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.015s] +Building reference seed array... [0.03s] +Building query seed array... [0.016s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.012s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.021s] -Building query seed array... [0.025s] +Building reference seed array... [0.016s] +Building query seed array... [0.027s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] Masking low complexity seeds... [0.012s] -Searching alignments... [0.014s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.018s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.028s] +Building query seed array... [0.029s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.003s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.014s] -Building query seed array... [0.023s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.012s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.004s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.01s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.012s] -Building query seed array... [0.026s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] +Building reference seed array... [0.026s] +Building query seed array... [0.031s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.002s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.009s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.015s] -Building query seed array... [0.026s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.028s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.023s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.012s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.016s] -Building query seed array... [0.027s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.02s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.021s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.013s] -Building query seed array... [0.025s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. +Building reference seed array... [0.004s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.03s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.013s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.026s] +Building reference seed array... [0.023s] Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.013s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.018s] -Building query seed array... [0.011s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.017s] +Building reference seed array... [0.031s] +Building query seed array... [0.008s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.022s] -Building query seed array... [0.02s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.013s] +Building reference seed array... [0.028s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.024s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.012s] +Building reference seed array... [0.028s] +Building query seed array... [0.03s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.009s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.033s] -Building query seed array... [0.032s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.002s] -Searching alignments... [0.007s] +Building reference seed array... [0.032s] +Building query seed array... [0.021s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. Building reference seed array... [0.031s] -Building query seed array... [0.027s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.012s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.032s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.001s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.097s] +Computing alignments... Loading trace points... [0.128s] Sorting trace points... [0s] -Computing alignments... [0.075s] +Computing alignments... [0.079s] Deallocating buffers... [0.004s] Loading trace points... [0s] - [0.178s] + [0.213s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -2135,17 +2171,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 4.654s +Total time = 6.445s Reported 41 pairwise alignments, 41 HSPs. 15 queries aligned. -+ diamond blastp --threads 1 --db test/C.faa.diamond --query test/L.faa --out /tmp/tmp.J27HjrolZa/L.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/C.faa.diamond --query test/L.faa --out /tmp/tmp.5la2s1Wo43/L.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.J27HjrolZa +Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) @@ -2153,471 +2189,471 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.052s] +Masking queries... [0.047s] Algorithm: Double-indexed -Building query histograms... [0.014s] +Building query histograms... [0.027s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.011s] +Masking reference... [0.005s] Initializing temporary storage... [0s] -Building reference histograms... [0.015s] +Building reference histograms... [0.008s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.01s] -Building query seed array... [0.011s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Building reference seed array... [0.023s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.015s] -Building query seed array... [0.017s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.024s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.016s] -Building query seed array... [0.023s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.017s] -Searching alignments... [0.007s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.016s] -Building query seed array... [0.023s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Building reference seed array... [0.018s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.013s] -Building query seed array... [0.022s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.006s] +Building reference seed array... [0.026s] +Building query seed array... [0.031s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.017s] -Building query seed array... [0.018s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.005s] +Building reference seed array... [0.018s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.022s] -Building query seed array... [0.027s] -Computing hash join... [0.005s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.004s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.014s] -Building query seed array... [0.017s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.007s] +Building reference seed array... [0.03s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.014s] -Building query seed array... [0.027s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.028s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.019s] -Searching alignments... [0.006s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.021s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.021s] -Building query seed array... [0.013s] -Computing hash join... [0.007s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.007s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.009s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.006s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.013s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0.016s] +Building reference seed array... [0.03s] +Building query seed array... [0.015s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.015s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.011s] +Building reference seed array... [0.015s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.011s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.022s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.012s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.02s] +Building reference seed array... [0.013s] +Building query seed array... [0.017s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.032s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.027s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.007s] -Building query seed array... [0.023s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.022s] -Building query seed array... [0.017s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.011s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.015s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.007s] -Building query seed array... [0.013s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.005s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.013s] -Building query seed array... [0.015s] -Computing hash join... [0s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.028s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.009s] -Building query seed array... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.011s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.018s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.007s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0.002s] +Masking low complexity seeds... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.015s] +Building reference seed array... [0.016s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.026s] +Building reference seed array... [0.022s] Building query seed array... [0.023s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.012s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.026s] +Building reference seed array... [0.023s] Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.015s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.018s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0.031s] +Building query seed array... [0.035s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.019s] +Building reference seed array... [0.034s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.026s] -Building query seed array... [0.023s] +Building query seed array... [0.032s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.006s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.017s] -Building query seed array... [0.021s] -Computing hash join... [0.008s] +Building reference seed array... [0.015s] +Building query seed array... [0.019s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.01s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.02s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.01s] +Building reference seed array... [0.023s] +Building query seed array... [0.014s] +Computing hash join... [0.005s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.008s] +Building reference seed array... [0.029s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.015s] -Building query seed array... [0.018s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0s] -Searching alignments... [0.01s] +Building reference seed array... [0.022s] +Building query seed array... [0.015s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.008s] +Building reference seed array... [0.019s] +Building query seed array... [0.02s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.017s] -Building query seed array... [0.026s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.013s] +Building reference seed array... [0.025s] +Building query seed array... [0.047s] +Computing hash join... [0.035s] +Masking low complexity seeds... [0.004s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] +Building reference seed array... [0.021s] +Building query seed array... [0.03s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.026s] +Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.027s] +Building query seed array... [0.027s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.027s] +Building query seed array... [0.013s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.017s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.015s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.027s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.016s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.015s] -Building query seed array... [0.031s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.022s] +Building query seed array... [0.007s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.026s] +Building reference seed array... [0.03s] Building query seed array... [0.023s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] +Masking low complexity seeds... [0.003s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.024s] -Building query seed array... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.016s] +Masking low complexity seeds... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] +Building reference seed array... [0.016s] +Building query seed array... [0.026s] Computing hash join... [0.012s] -Masking low complexity seeds... [0.011s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.031s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.013s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.013s] +Building reference seed array... [0.003s] +Building query seed array... [0.014s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.004s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.014s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.013s] +Building reference seed array... [0.027s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.013s] +Masking low complexity seeds... [0.004s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.015s] -Building query seed array... [0.007s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.009s] -Building query seed array... [0.003s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0s] -Searching alignments... [0.01s] +Building reference seed array... [0.025s] +Building query seed array... [0.015s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.007s] -Building query seed array... [0.011s] -Computing hash join... [0s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.015s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.001s] -Computing hash join... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.022s] +Computing hash join... [0.006s] Masking low complexity seeds... [0s] -Searching alignments... [0.004s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.009s] -Computing hash join... [0.002s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.001s] +Building reference seed array... [0.017s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.008s] -Building query seed array... [0.018s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0.005s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.284s] +Computing alignments... Loading trace points... [0.362s] Sorting trace points... [0s] -Computing alignments... [0.152s] -Deallocating buffers... [0.006s] +Computing alignments... [0.179s] +Deallocating buffers... [0.003s] Loading trace points... [0s] - [0.444s] + [0.547s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -2627,17 +2663,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 4.909s +Total time = 6.582s Reported 64 pairwise alignments, 64 HSPs. 33 queries aligned. -+ diamond blastp --threads 1 --db test/L.faa.diamond --query test/C.faa --out /tmp/tmp.J27HjrolZa/C.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/L.faa.diamond --query test/C.faa --out /tmp/tmp.5la2s1Wo43/C.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.J27HjrolZa +Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) @@ -2645,471 +2681,471 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.04s] +Masking queries... [0.055s] Algorithm: Double-indexed -Building query histograms... [0.017s] +Building query histograms... [0.035s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.001s] +Masking reference... [0.015s] Initializing temporary storage... [0s] -Building reference histograms... [0.012s] +Building reference histograms... [0.035s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.01s] -Building query seed array... [0.011s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.007s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.015s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.03s] -Building query seed array... [0.015s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.003s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.003s] -Building query seed array... [0.003s] +Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. +Building reference seed array... [0.021s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.005s] +Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. +Building reference seed array... [0.002s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. +Building reference seed array... [0.011s] +Building query seed array... [0.031s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] +Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. +Building reference seed array... [0.031s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0.002s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.027s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.009s] -Computing hash join... [0s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.029s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.031s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.018s] -Building query seed array... [0.015s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.003s] +Building reference seed array... [0.03s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.007s] -Building query seed array... [0.015s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.007s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.03s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0s] -Searching alignments... [0.007s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.012s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.021s] -Building query seed array... [0.005s] +Building reference seed array... [0.034s] +Building query seed array... [0.007s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.016s] -Building query seed array... [0.026s] -Computing hash join... [0.011s] +Building reference seed array... [0.026s] +Building query seed array... [0.011s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.015s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.01s] -Building query seed array... [0.015s] -Computing hash join... [0.002s] -Masking low complexity seeds... [0s] -Searching alignments... [0.007s] +Building reference seed array... [0.022s] +Building query seed array... [0.031s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.001s] +Building reference seed array... [0.015s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.024s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.016s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.016s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.02s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] +Building reference seed array... [0.031s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] +Building reference seed array... [0.031s] +Building query seed array... [0.029s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.012s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.015s] +Building query seed array... [0.011s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.019s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.011s] -Building query seed array... [0.028s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.014s] +Building reference seed array... [0.031s] +Building query seed array... [0.024s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] +Building reference seed array... [0.032s] +Building query seed array... [0.031s] +Computing hash join... [0.012s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.026s] +Building reference seed array... [0.027s] Building query seed array... [0.023s] -Computing hash join... [0.011s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.022s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.007s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.004s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.01s] Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.018s] -Building query seed array... [0.023s] -Computing hash join... [0.003s] +Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. +Building reference seed array... [0.019s] +Building query seed array... [0.031s] +Computing hash join... [0.008s] Masking low complexity seeds... [0.003s] -Searching alignments... [0.006s] +Searching alignments... [0.011s] +Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.017s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.007s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.015s] -Building query seed array... [0.011s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.013s] -Building query seed array... [0.003s] -Computing hash join... [0.002s] -Masking low complexity seeds... [0.005s] -Searching alignments... [0.006s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.009s] -Building query seed array... [0.004s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.015s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.02s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.009s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.005s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.007s] -Building query seed array... [0.016s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.005s] +Building reference seed array... [0.026s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.027s] -Computing hash join... [0.008s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] +Building reference seed array... [0.026s] +Building query seed array... [0.007s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.018s] +Building query seed array... [0.019s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. Building reference seed array... [0.026s] -Building query seed array... [0.023s] +Building query seed array... [0.031s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Masking low complexity seeds... [0.008s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.012s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.02s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.017s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.013s] +Building reference seed array... [0.022s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.028s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.015s] -Building query seed array... [0.012s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0.013s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.018s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.005s] -Computing hash join... [0.002s] -Masking low complexity seeds... [0.002s] -Searching alignments... [0.003s] -Deallocating memory... [0.001s] +Building reference seed array... [0.022s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.005s] +Searching alignments... [0.001s] +Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.308s] +Computing alignments... Loading trace points... [0.521s] Sorting trace points... [0s] -Computing alignments... [0.28s] -Deallocating buffers... [0.007s] +Computing alignments... [0.305s] +Deallocating buffers... [0s] Loading trace points... [0s] - [0.597s] + [0.827s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -3119,17 +3155,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 5.313s +Total time = 7.397s Reported 133 pairwise alignments, 133 HSPs. 109 queries aligned. -+ diamond blastp --threads 1 --db test/C.faa.diamond --query test/M.faa --out /tmp/tmp.J27HjrolZa/M.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/C.faa.diamond --query test/M.faa --out /tmp/tmp.5la2s1Wo43/M.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.J27HjrolZa +Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) @@ -3137,471 +3173,471 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.039s] +Masking queries... [0.046s] Algorithm: Double-indexed -Building query histograms... [0.031s] +Building query histograms... [0.035s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.011s] +Masking reference... [0.015s] Initializing temporary storage... [0s] -Building reference histograms... [0.031s] +Building reference histograms... [0.035s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.025s] -Building query seed array... [0.025s] +Building reference seed array... [0.023s] +Building query seed array... [0.007s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.035s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.022s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] +Building reference seed array... [0.03s] +Building query seed array... [0.028s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] +Building query seed array... [0.028s] +Computing hash join... [0.016s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] +Building reference seed array... [0.031s] +Building query seed array... [0.027s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.015s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.001s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.006s] -Building query seed array... [0.015s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.03s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.007s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] +Building reference seed array... [0.028s] +Building query seed array... [0.026s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.015s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.01s] -Building query seed array... [0.008s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.016s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.007s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.013s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.003s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.015s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.002s] -Searching alignments... [0.001s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.02s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.02s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] +Building reference seed array... [0.023s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] +Building reference seed array... [0.027s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.022s] -Building query seed array... [0.024s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.023s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.022s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.011s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.014s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.02s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.007s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.015s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.008s] +Building reference seed array... [0.03s] +Building query seed array... [0.034s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.016s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.014s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building query seed array... [0.019s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.02s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.006s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.016s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.014s] +Building reference seed array... [0.018s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.041s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.004s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.022s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.005s] -Searching alignments... [0.009s] +Building reference seed array... [0.021s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.01s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0.002s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.01s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.002s] -Searching alignments... [0.01s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.003s] -Building query seed array... [0.023s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.009s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.007s] -Building query seed array... [0.02s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.005s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.015s] -Building query seed array... [0.007s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.001s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.012s] -Building query seed array... [0.014s] -Computing hash join... [0s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.007s] -Building query seed array... [0.007s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.013s] +Building reference seed array... [0.03s] +Building query seed array... [0.016s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.015s] -Building query seed array... [0.023s] +Building reference seed array... [0.018s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.002s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.011s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.019s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.003s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.009s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.002s] -Searching alignments... [0s] +Building reference seed array... [0.009s] +Building query seed array... [0.029s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.01s] -Building query seed array... [0.011s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.008s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0.007s] +Building reference seed array... [0.027s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.006s] +Building reference seed array... [0.03s] +Building query seed array... [0.019s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.009s] -Building query seed array... [0.019s] -Computing hash join... [0.003s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.009s] +Searching alignments... [0.017s] Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.015s] -Computing hash join... [0s] +Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.001s] Searching alignments... [0s] Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. +Building reference seed array... [0.014s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.013s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.001s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0.006s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0.002s] +Building reference seed array... [0.027s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.218s] +Computing alignments... Loading trace points... [0.362s] Sorting trace points... [0s] -Computing alignments... [0.152s] -Deallocating buffers... [0s] +Computing alignments... [0.171s] +Deallocating buffers... [0.004s] Loading trace points... [0s] - [0.373s] + [0.539s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -3611,17 +3647,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 4.845s +Total time = 7.392s Reported 62 pairwise alignments, 62 HSPs. 33 queries aligned. -+ diamond blastp --threads 1 --db test/M.faa.diamond --query test/C.faa --out /tmp/tmp.J27HjrolZa/C.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/M.faa.diamond --query test/C.faa --out /tmp/tmp.5la2s1Wo43/C.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.J27HjrolZa +Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) @@ -3629,471 +3665,471 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.049s] +Masking queries... [0.058s] Algorithm: Double-indexed -Building query histograms... [0.036s] +Building query histograms... [0.039s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.011s] +Masking reference... [0.013s] Initializing temporary storage... [0s] -Building reference histograms... [0.04s] +Building reference histograms... [0.034s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.034s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.02s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.001s] +Building reference seed array... [0.031s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.012s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] +Building reference seed array... [0.03s] +Building query seed array... [0.024s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.022s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.016s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.005s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.018s] -Building query seed array... [0.01s] -Computing hash join... [0.003s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.015s] -Building query seed array... [0.008s] -Computing hash join... [0s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0.002s] +Building reference seed array... [0.016s] +Building query seed array... [0.027s] +Computing hash join... [0.005s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.008s] -Building query seed array... [0.007s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] Computing hash join... [0.001s] Masking low complexity seeds... [0s] -Searching alignments... [0.005s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.013s] -Building query seed array... [0.017s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.012s] +Building reference seed array... [0.002s] +Building query seed array... [0.007s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0.002s] -Searching alignments... [0.002s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.01s] -Computing hash join... [0.002s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.003s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.006s] -Building query seed array... [0.011s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.016s] -Building query seed array... [0.002s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.011s] +Building reference seed array... [0.026s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.009s] -Building query seed array... [0.004s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.017s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.007s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.03s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.006s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.004s] -Computing hash join... [0.002s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0.002s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.006s] -Building query seed array... [0.006s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] Computing hash join... [0s] -Masking low complexity seeds... [0.002s] +Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.014s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] +Building reference seed array... [0.012s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0s] +Building reference seed array... [0.016s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.012s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.006s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.018s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.018s] -Computing hash join... [0.005s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.006s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.015s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0.004s] +Masking low complexity seeds... [0.005s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.009s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.027s] +Building query seed array... [0.026s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.023s] +Building reference seed array... [0.027s] Building query seed array... [0.031s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.005s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.007s] -Building query seed array... [0.007s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.005s] +Building reference seed array... [0.031s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.015s] -Building query seed array... [0.015s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.029s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.015s] -Building query seed array... [0.019s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.008s] +Building reference seed array... [0.026s] +Building query seed array... [0.008s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.021s] -Building query seed array... [0.023s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0.004s] +Building reference seed array... [0.011s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.01s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.008s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.016s] -Building query seed array... [0.015s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.004s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.017s] -Building query seed array... [0.004s] -Computing hash join... [0.002s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.006s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.009s] -Building query seed array... [0.004s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.013s] -Searching alignments... [0.009s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.012s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.005s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.015s] -Building query seed array... [0.015s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.008s] +Building reference seed array... [0.019s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.008s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.002s] -Searching alignments... [0.001s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.003s] -Deallocating memory... [0.001s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] +Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.214s] +Computing alignments... Loading trace points... [0.506s] Sorting trace points... [0s] -Computing alignments... [0.175s] +Computing alignments... [0.232s] Deallocating buffers... [0s] Loading trace points... [0s] - [0.391s] + [0.74s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -4103,17 +4139,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 3.844s +Total time = 6.517s Reported 131 pairwise alignments, 131 HSPs. 109 queries aligned. -+ diamond blastp --ignore-warnings --threads 1 --db test/C.faa.diamond --query test/C2.faa --out /tmp/tmp.J27HjrolZa/C2.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --ignore-warnings --threads 1 --db test/C.faa.diamond --query test/C2.faa --out /tmp/tmp.5la2s1Wo43/C2.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.J27HjrolZa +Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) @@ -4121,471 +4157,471 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.002s] +Masking queries... [0s] Algorithm: Double-indexed -Building query histograms... [0.002s] +Building query histograms... [0.001s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.003s] -Initializing temporary storage... [0.002s] -Building reference histograms... [0.015s] +Masking reference... [0.011s] +Initializing temporary storage... [0s] +Building reference histograms... [0.024s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.006s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] +Building reference seed array... [0.03s] +Building query seed array... [0.019s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.012s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.015s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.011s] +Building reference seed array... [0.009s] +Building query seed array... [0.011s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.019s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.007s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.015s] +Building reference seed array... [0.019s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] +Building reference seed array... [0.031s] +Building query seed array... [0.027s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] +Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.016s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.019s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.007s] +Building query seed array... [0.019s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.023s] +Building reference seed array... [0.031s] Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.006s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] +Building reference seed array... [0.027s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] +Building reference seed array... [0.03s] +Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.006s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.007s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.024s] -Building query seed array... [0s] +Building reference seed array... [0.007s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.011s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] +Building reference seed array... [0.013s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.027s] +Building reference seed array... [0.03s] Building query seed array... [0.031s] -Computing hash join... [0.011s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.027s] +Building query seed array... [0.024s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.012s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.03s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.026s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.027s] +Building reference seed array... [0.018s] Building query seed array... [0.027s] -Computing hash join... [0.011s] +Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.018s] -Building query seed array... [0.023s] +Building reference seed array... [0.016s] +Building query seed array... [0.027s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.023s] +Building query seed array... [0.007s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.011s] +Building reference seed array... [0.011s] +Building query seed array... [0.011s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.018s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] +Building reference seed array... [0.023s] +Building query seed array... [0.019s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.012s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.042s] +Building query seed array... [0.035s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.014s] +Building reference seed array... [0.023s] +Building query seed array... [0.027s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] +Building reference seed array... [0.027s] +Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.022s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.002s] -Searching alignments... [0.004s] +Building reference seed array... [0.027s] +Building query seed array... [0.016s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.023s] +Building reference seed array... [0.015s] +Building query seed array... [0.027s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.009s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.015s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building query seed array... [0.027s] +Computing hash join... [0.004s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0s] +Building reference seed array... [0.015s] +Building query seed array... [0.043s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.014s] +Building reference seed array... [0.023s] +Building query seed array... [0.016s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. Building reference seed array... [0.027s] -Building query seed array... [0.031s] -Computing hash join... [0.016s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0s] +Building query seed array... [0.028s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.014s] -Building query seed array... [0.018s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.014s] -Building query seed array... [0.02s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.024s] +Building reference seed array... [0.018s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.013s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.026s] +Building reference seed array... [0.03s] Building query seed array... [0.027s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] +Building reference seed array... [0.023s] +Building query seed array... [0.031s] +Computing hash join... [0.012s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.024s] +Building query seed array... [0.019s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.007s] +Building query seed array... [0.019s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.018s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.017s] +Building reference seed array... [0.028s] +Building query seed array... [0.034s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.043s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.01s] +Building query seed array... [0.007s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.019s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.01s] +Building query seed array... [0.007s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.014s] -Building query seed array... [0.027s] -Computing hash join... [0.007s] +Building reference seed array... [0.022s] +Building query seed array... [0.007s] +Computing hash join... [0.003s] Masking low complexity seeds... [0.007s] -Searching alignments... [0s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.02s] -Building query seed array... [0.019s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.017s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.01s] -Building query seed array... [0.012s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.035s] +Computing alignments... Loading trace points... [0.046s] Sorting trace points... [0s] -Computing alignments... [0.015s] +Computing alignments... [0.007s] Deallocating buffers... [0.007s] Loading trace points... [0s] - [0.059s] + [0.063s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -4595,401 +4631,401 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 5.082s +Total time = 5.724s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/C.faa --out /tmp/tmp.J27HjrolZa/C.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/C.faa --out /tmp/tmp.5la2s1Wo43/C.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.J27HjrolZa +Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] -Loading query sequences... [0.004s] -Masking queries... [0.047s] +Loading query sequences... [0s] +Masking queries... [0.053s] Algorithm: Double-indexed -Building query histograms... [0.031s] +Building query histograms... [0.027s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.015s] +Masking reference... [0.007s] Initializing temporary storage... [0s] -Building reference histograms... [0.019s] +Building reference histograms... [0.031s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.035s] -Building query seed array... [0.008s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.032s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.031s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.007s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.011s] -Building query seed array... [0.009s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.023s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.013s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] +Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. +Building reference seed array... [0.005s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.014s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.015s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.031s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.015s] +Building query seed array... [0.027s] +Computing hash join... [0.027s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.019s] +Building reference seed array... [0.027s] Building query seed array... [0.023s] -Computing hash join... [0.023s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Computing hash join... [0.001s] +Masking low complexity seeds... [0.004s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.013s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.023s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.032s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.007s] -Building query seed array... [0.023s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.01s] -Building query seed array... [0.031s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0.006s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.02s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] +Building reference seed array... [0.013s] +Building query seed array... [0.019s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.019s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.007s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.031s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.015s] +Building reference seed array... [0.03s] Building query seed array... [0.027s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.019s] -Searching alignments... [0.011s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.015s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.015s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.01s] +Building query seed array... [0.011s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.024s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.005s] -Searching alignments... [0.013s] +Building reference seed array... [0.023s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.03s] -Building query seed array... [0.024s] +Building reference seed array... [0.011s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.009s] -Building query seed array... [0.027s] +Building reference seed array... [0.034s] +Building query seed array... [0.035s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.019s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Building reference seed array... [0.007s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.02s] +Building reference seed array... [0.017s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.015s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.011s] -Building query seed array... [0.015s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.023s] -Searching alignments... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.031s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.019s] -Searching alignments... [0.006s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.006s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.027s] -Computing hash join... [0.023s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. Building reference seed array... [0.031s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0s] Building query seed array... [0.011s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.019s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.031s] +Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. +Building reference seed array... [0.031s] +Building query seed array... [0.023s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.019s] -Searching alignments... [0.01s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. +Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. Building reference seed array... [0.031s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.004s] +Building query seed array... [0.031s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.013s] Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.023s] +Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. +Building reference seed array... [0.03s] Building query seed array... [0.031s] -Computing hash join... [0.011s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.015s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. +Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] Computing hash join... [0s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.008s] +Masking low complexity seeds... [0s] +Searching alignments... [0.005s] Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] +Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. +Building reference seed array... [0.022s] +Building query seed array... [0.025s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. +Building reference seed array... [0.015s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.013s] +Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. +Building reference seed array... [0.035s] +Building query seed array... [0.029s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] +Building reference seed array... [0.01s] +Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0s] Building query seed array... [0.001s] -Computing hash join... [0s] +Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] @@ -4998,86 +5034,86 @@ Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.011s] +Building reference seed array... [0.031s] Building query seed array... [0.031s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.003s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.027s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.015s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.005s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.011s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.006s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.011s] -Building query seed array... [0.027s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.017s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0.031s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.039s] +Computing alignments... Loading trace points... [0.046s] Sorting trace points... [0s] Computing alignments... [0.015s] Deallocating buffers... [0.007s] Loading trace points... [0s] - [0.063s] + [0.071s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -5087,17 +5123,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 3.837s +Total time = 5.931s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --threads 1 --db test/E.faa.diamond --query test/L.faa --out /tmp/tmp.J27HjrolZa/L.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/E.faa.diamond --query test/L.faa --out /tmp/tmp.5la2s1Wo43/L.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.J27HjrolZa +Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) @@ -5105,471 +5141,471 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.052s] +Masking queries... [0.046s] Algorithm: Double-indexed -Building query histograms... [0.035s] +Building query histograms... [0.039s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.003s] +Masking reference... [0.015s] Initializing temporary storage... [0s] -Building reference histograms... [0.009s] +Building reference histograms... [0.043s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.013s] -Building query seed array... [0.035s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.005s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.027s] -Computing hash join... [0.019s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.01s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.02s] +Building reference seed array... [0.03s] Building query seed array... [0.031s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.027s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.023s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.034s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.016s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.036s] -Building query seed array... [0.018s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.013s] -Building query seed array... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.029s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.011s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.017s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0.016s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.015s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.013s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] Searching alignments... [0.003s] Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.035s] -Building query seed array... [0.028s] -Computing hash join... [0.005s] +Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.001s] +Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. +Building reference seed array... [0.008s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.002s] +Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. +Building reference seed array... [0.003s] Building query seed array... [0.001s] Computing hash join... [0s] +Masking low complexity seeds... [0.002s] +Searching alignments... [0.016s] +Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. +Building reference seed array... [0.029s] +Building query seed array... [0.023s] +Computing hash join... [0.001s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. +Building reference seed array... [0.011s] +Building query seed array... [0.011s] +Computing hash join... [0.001s] +Masking low complexity seeds... [0.004s] +Searching alignments... [0s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] +Building reference seed array... [0.003s] +Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] +Building reference seed array... [0.017s] +Building query seed array... [0.023s] +Computing hash join... [0.002s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.007s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.019s] -Searching alignments... [0.006s] +Building reference seed array... [0.004s] +Building query seed array... [0.018s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.013s] -Building query seed array... [0.023s] -Computing hash join... [0.019s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.035s] -Building query seed array... [0.031s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Building reference seed array... [0.003s] +Building query seed array... [0.003s] +Computing hash join... [0.001s] +Masking low complexity seeds... [0.002s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.031s] -Building query seed array... [0.035s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.006s] +Building query seed array... [0.004s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.03s] -Building query seed array... [0.022s] +Building reference seed array... [0.001s] +Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. +Building reference seed array... [0.008s] +Building query seed array... [0.005s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.005s] +Searching alignments... [0.008s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0.006s] +Building reference seed array... [0.031s] +Building query seed array... [0.03s] +Computing hash join... [0.003s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.013s] +Building reference seed array... [0.034s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.023s] +Building reference seed array... [0.03s] Building query seed array... [0.031s] -Computing hash join... [0.019s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.019s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.007s] +Building reference seed array... [0.03s] Building query seed array... [0.031s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.015s] -Building query seed array... [0.026s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.031s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.015s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.039s] -Building query seed array... [0.019s] +Building reference seed array... [0.003s] +Building query seed array... [0.012s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] +Masking low complexity seeds... [0.003s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.007s] +Building query seed array... [0.007s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.007s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.011s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.004s] +Building reference seed array... [0.019s] +Building query seed array... [0.031s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.024s] -Building query seed array... [0.036s] -Computing hash join... [0s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. Building reference seed array... [0.031s] -Building query seed array... [0.027s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.023s] +Building reference seed array... [0.031s] Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.027s] +Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.01s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.015s] -Building query seed array... [0.024s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.028s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.015s] +Building reference seed array... [0.03s] Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.019s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.02s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0.005s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.005s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.001s] +Building reference seed array... [0.012s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] +Building reference seed array... [0.002s] +Building query seed array... [0.005s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.003s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.007s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.002s] +Building reference seed array... [0.015s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.011s] +Building reference seed array... [0.002s] Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.015s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.021s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.024s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.009s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.071s] +Computing alignments... Loading trace points... [0.355s] Sorting trace points... [0s] -Computing alignments... [0.36s] +Computing alignments... [0.49s] Deallocating buffers... [0s] Loading trace points... [0s] - [0.434s] + [0.848s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -5579,17 +5615,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 4.153s +Total time = 6.111s Reported 489 pairwise alignments, 489 HSPs. 32 queries aligned. -+ diamond blastp --threads 1 --db test/L.faa.diamond --query test/E.faa --out /tmp/tmp.J27HjrolZa/E.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/L.faa.diamond --query test/E.faa --out /tmp/tmp.5la2s1Wo43/E.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.J27HjrolZa +Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) @@ -5597,471 +5633,471 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.022s] +Masking queries... [0.008s] Algorithm: Double-indexed Building query histograms... [0.009s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.003s] +Masking reference... [0.001s] Initializing temporary storage... [0s] -Building reference histograms... [0.005s] +Building reference histograms... [0.004s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.001s] Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.012s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.023s] +Building reference seed array... [0.001s] Building query seed array... [0.002s] -Computing hash join... [0.02s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.015s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.015s] -Building query seed array... [0.024s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.019s] -Computing hash join... [0.003s] +Building reference seed array... [0.014s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Building reference seed array... [0.023s] +Building query seed array... [0.015s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.036s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.009s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.008s] -Computing hash join... [0s] -Masking low complexity seeds... [0.016s] +Building reference seed array... [0.03s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.023s] +Building query seed array... [0.027s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.026s] -Building query seed array... [0.016s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building query seed array... [0.031s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.016s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.009s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.017s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] +Building reference seed array... [0.029s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] +Building reference seed array... [0.027s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.027s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.014s] +Building query seed array... [0.019s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.02s] -Building query seed array... [0.023s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.01s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.015s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] +Building reference seed array... [0.028s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.011s] -Building query seed array... [0.011s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] -Computing hash join... [0.002s] +Building reference seed array... [0.005s] +Building query seed array... [0.014s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.012s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.021s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.018s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] +Building reference seed array... [0.011s] +Building query seed array... [0.031s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.019s] -Searching alignments... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.007s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] +Building reference seed array... [0.014s] +Building query seed array... [0.015s] +Computing hash join... [0.003s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.023s] -Building query seed array... [0.027s] +Building query seed array... [0.035s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] +Building query seed array... [0.015s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.019s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.039s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.02s] -Building query seed array... [0.019s] +Building reference seed array... [0.018s] +Building query seed array... [0.031s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.016s] -Building query seed array... [0.027s] +Building reference seed array... [0.018s] +Building query seed array... [0.021s] Computing hash join... [0.003s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Masking low complexity seeds... [0.001s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.035s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.004s] +Building query seed array... [0.013s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.003s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.013s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] +Building reference seed array... [0.016s] +Building query seed array... [0.031s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.025s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.024s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.022s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.001s] +Building query seed array... [0.004s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.014s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.039s] +Building reference seed array... [0.031s] Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.017s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.028s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.019s] +Building reference seed array... [0.031s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.016s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.006s] +Building reference seed array... [0.007s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.006s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.012s] -Building query seed array... [0.027s] +Building reference seed array... [0.019s] +Building query seed array... [0.019s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.017s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.027s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.013s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.005s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.183s] +Computing alignments... Loading trace points... [0.451s] Sorting trace points... [0s] -Computing alignments... [0.567s] -Deallocating buffers... [0s] +Computing alignments... [1.119s] +Deallocating buffers... [0.007s] Loading trace points... [0s] - [0.752s] + [1.58s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -6071,17 +6107,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 5.797s +Total time = 6.929s Reported 1173 pairwise alignments, 1173 HSPs. 72 queries aligned. -+ diamond blastp --threads 1 --db test/E.faa.diamond --query test/M.faa --out /tmp/tmp.J27HjrolZa/M.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/E.faa.diamond --query test/M.faa --out /tmp/tmp.5la2s1Wo43/M.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.J27HjrolZa +Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) @@ -6089,471 +6125,471 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.042s] +Masking queries... [0.045s] Algorithm: Double-indexed Building query histograms... [0.023s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.01s] +Masking reference... [0.015s] Initializing temporary storage... [0s] -Building reference histograms... [0.036s] +Building reference histograms... [0.035s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.01s] +Building reference seed array... [0.043s] Building query seed array... [0.027s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.016s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.007s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.016s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.004s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.027s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.003s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.007s] +Building reference seed array... [0.018s] +Building query seed array... [0.031s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.011s] +Building reference seed array... [0.011s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.02s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.008s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.025s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.014s] +Building reference seed array... [0.013s] +Building query seed array... [0.029s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.017s] -Building query seed array... [0.022s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.019s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.016s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.008s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.018s] -Building query seed array... [0.01s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.002s] -Searching alignments... [0.009s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.017s] -Building query seed array... [0.04s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.016s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.007s] +Building reference seed array... [0.018s] +Building query seed array... [0.019s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.015s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.009s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.009s] -Building query seed array... [0.023s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.004s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.017s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.003s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.007s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.019s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.013s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.02s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.003s] +Building query seed array... [0.003s] +Computing hash join... [0.002s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.019s] -Searching alignments... [0.011s] +Building reference seed array... [0.017s] +Building query seed array... [0.03s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.003s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.02s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.031s] +Building reference seed array... [0.03s] Building query seed array... [0.031s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.003s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.02s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.031s] +Building query seed array... [0.032s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.006s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.02s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.03s] +Building query seed array... [0.019s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0.014s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0.013s] +Building query seed array... [0.03s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.027s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Building reference seed array... [0.008s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Building reference seed array... [0.015s] +Building query seed array... [0.03s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.018s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Building reference seed array... [0.01s] +Building query seed array... [0.015s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Building reference seed array... [0.03s] +Building query seed array... [0.019s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.02s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.009s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.02s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.015s] -Computing hash join... [0.003s] +Building reference seed array... [0.031s] +Building query seed array... [0.024s] +Computing hash join... [0.005s] Masking low complexity seeds... [0s] -Searching alignments... [0.005s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.007s] -Building query seed array... [0.015s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Building reference seed array... [0.013s] +Building query seed array... [0.011s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0.019s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.011s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.005s] +Building reference seed array... [0.02s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.018s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.019s] -Searching alignments... [0.017s] +Building query seed array... [0.031s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.015s] -Building query seed array... [0.011s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.005s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.016s] -Building query seed array... [0.015s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.009s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.02s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.016s] -Building query seed array... [0.023s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.02s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.022s] -Building query seed array... [0.027s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.012s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] Computing hash join... [0.003s] -Masking low complexity seeds... [0.007s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.017s] Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.267s] +Computing alignments... Loading trace points... [0.051s] Sorting trace points... [0s] -Computing alignments... [0.543s] -Deallocating buffers... [0.007s] +Computing alignments... [0.607s] +Deallocating buffers... [0.004s] Loading trace points... [0s] - [0.819s] + [0.664s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -6563,17 +6599,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 5.675s +Total time = 6.601s Reported 489 pairwise alignments, 489 HSPs. 32 queries aligned. -+ diamond blastp --threads 1 --db test/M.faa.diamond --query test/E.faa --out /tmp/tmp.J27HjrolZa/E.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/M.faa.diamond --query test/E.faa --out /tmp/tmp.5la2s1Wo43/E.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.J27HjrolZa +Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) @@ -6581,471 +6617,471 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.02s] +Masking queries... [0.032s] Algorithm: Double-indexed -Building query histograms... [0.035s] +Building query histograms... [0.047s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.007s] +Masking reference... [0.015s] Initializing temporary storage... [0s] -Building reference histograms... [0.027s] +Building reference histograms... [0.036s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.022s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.007s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.02s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.007s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.02s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.002s] +Building reference seed array... [0.018s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.013s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.014s] Masking low complexity seeds... [0.008s] -Searching alignments... [0.003s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.007s] -Building query seed array... [0.015s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. Building reference seed array... [0.019s] -Building query seed array... [0.023s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.007s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.018s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.007s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.02s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.009s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.002s] +Building query seed array... [0.015s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.007s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.005s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.009s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.007s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.01s] -Computing hash join... [0s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.003s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.007s] +Building reference seed array... [0.03s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.015s] +Building reference seed array... [0.026s] +Building query seed array... [0.009s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.011s] +Building reference seed array... [0.03s] Building query seed array... [0.003s] Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Masking low complexity seeds... [0.002s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.013s] -Building query seed array... [0.023s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.035s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.009s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.027s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.015s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] +Building reference seed array... [0.024s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.007s] +Building reference seed array... [0.027s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.02s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.011s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.022s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.02s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.007s] +Building reference seed array... [0.03s] +Building query seed array... [0.028s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.017s] -Building query seed array... [0.022s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.014s] +Building reference seed array... [0.02s] +Building query seed array... [0.023s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.022s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0.027s] +Building query seed array... [0.019s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.023s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.009s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.024s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.004s] +Building reference seed array... [0.02s] +Building query seed array... [0.032s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.03s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.009s] +Building reference seed array... [0.001s] +Building query seed array... [0.006s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0.023s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.018s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.019s] +Building query seed array... [0.024s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.012s] -Building query seed array... [0.023s] +Building reference seed array... [0.025s] +Building query seed array... [0.024s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.027s] +Building reference seed array... [0.024s] +Building query seed array... [0.023s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.031s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.015s] +Building reference seed array... [0.018s] +Building query seed array... [0.024s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.007s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.022s] -Building query seed array... [0.027s] +Building reference seed array... [0.027s] +Building query seed array... [0.02s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.012s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.012s] -Building query seed array... [0.019s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.013s] +Building reference seed array... [0.023s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.038s] -Building query seed array... [0.008s] -Computing hash join... [0.016s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.02s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.011s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.018s] +Building query seed array... [0.02s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.004s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.009s] +Building reference seed array... [0.019s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.017s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.007s] +Building reference seed array... [0.022s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.01s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.01s] +Building reference seed array... [0.022s] +Building query seed array... [0.016s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.011s] -Building query seed array... [0.025s] -Computing hash join... [0.006s] +Building reference seed array... [0.022s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.02s] +Building reference seed array... [0.022s] Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.013s] +Building reference seed array... [0.022s] +Building query seed array... [0.02s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.028s] -Building query seed array... [0.023s] +Building reference seed array... [0.022s] +Building query seed array... [0.02s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.006s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.02s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.015s] +Building reference seed array... [0.033s] +Building query seed array... [0.028s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.007s] -Building query seed array... [0.012s] -Computing hash join... [0.012s] +Building reference seed array... [0.023s] +Building query seed array... [0.02s] +Computing hash join... [0.01s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.005s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. Building reference seed array... [0.018s] -Building query seed array... [0.02s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.002s] -Searching alignments... [0.019s] +Building query seed array... [0.022s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.017s] -Building query seed array... [0.018s] -Computing hash join... [0.011s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.004s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.02s] -Building query seed array... [0.02s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.008s] +Building reference seed array... [0.027s] +Building query seed array... [0.025s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.016s] -Building query seed array... [0.019s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.009s] +Building reference seed array... [0.032s] +Building query seed array... [0.016s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.013s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.334s] +Computing alignments... Loading trace points... [0.358s] Sorting trace points... [0s] -Computing alignments... [0.611s] -Deallocating buffers... [0s] +Computing alignments... [1.21s] +Deallocating buffers... [0.003s] Loading trace points... [0s] - [0.947s] + [1.575s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -7055,17 +7091,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 5.214s +Total time = 7.596s Reported 1173 pairwise alignments, 1173 HSPs. 72 queries aligned. -+ diamond blastp --ignore-warnings --threads 1 --db test/E.faa.diamond --query test/C2.faa --out /tmp/tmp.J27HjrolZa/C2.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --ignore-warnings --threads 1 --db test/E.faa.diamond --query test/C2.faa --out /tmp/tmp.5la2s1Wo43/C2.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.J27HjrolZa +Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) @@ -7073,471 +7109,471 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0s] +Masking queries... [0.012s] Algorithm: Double-indexed -Building query histograms... [0.018s] +Building query histograms... [0.022s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.014s] +Masking reference... [0.013s] Initializing temporary storage... [0s] -Building reference histograms... [0.035s] +Building reference histograms... [0.045s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.008s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. Building reference seed array... [0.017s] -Building query seed array... [0.019s] +Building query seed array... [0.023s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] +Searching alignments... [0.012s] +Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. +Building reference seed array... [0.027s] +Building query seed array... [0.022s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.012s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.019s] +Building query seed array... [0.026s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.018s] -Building query seed array... [0.015s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Building reference seed array... [0.025s] +Building query seed array... [0.001s] +Computing hash join... [0.001s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.03s] -Building query seed array... [0.023s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0.005s] +Building query seed array... [0.004s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.012s] -Building query seed array... [0.015s] +Building reference seed array... [0.003s] +Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.009s] +Building query seed array... [0.023s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.023s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.011s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.024s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] +Building reference seed array... [0.026s] +Building query seed array... [0.027s] +Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.024s] -Computing hash join... [0.011s] +Building reference seed array... [0.022s] +Building query seed array... [0.011s] +Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.016s] +Building reference seed array... [0.026s] +Building query seed array... [0.012s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.023s] +Building query seed array... [0.018s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.031s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.011s] +Building reference seed array... [0.026s] +Building query seed array... [0.019s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.005s] +Building query seed array... [0.021s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.004s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.004s] +Building reference seed array... [0.011s] +Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.006s] -Building query seed array... [0.009s] +Building reference seed array... [0.013s] +Building query seed array... [0.022s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Masking low complexity seeds... [0.008s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.023s] Building query seed array... [0.023s] -Computing hash join... [0.011s] +Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.02s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Building reference seed array... [0.027s] +Building query seed array... [0.022s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] +Building reference seed array... [0.034s] +Building query seed array... [0.035s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.011s] -Building query seed array... [0.011s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.003s] +Building reference seed array... [0.022s] +Building query seed array... [0.024s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.018s] -Building query seed array... [0.014s] -Computing hash join... [0.009s] +Building reference seed array... [0.026s] +Building query seed array... [0.006s] +Computing hash join... [0.016s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.024s] +Building query seed array... [0.014s] +Computing hash join... [0.001s] +Masking low complexity seeds... [0s] +Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.018s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.012s] -Building query seed array... [0.004s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.024s] +Building query seed array... [0.002s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.018s] -Building query seed array... [0.031s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.019s] +Building reference seed array... [0.023s] +Building query seed array... [0.014s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.003s] +Building query seed array... [0.024s] +Computing hash join... [0.016s] Masking low complexity seeds... [0.007s] -Searching alignments... [0.001s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.013s] -Building query seed array... [0.026s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.018s] +Building query seed array... [0.015s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.015s] +Building reference seed array... [0.019s] +Building query seed array... [0.03s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.002s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.03s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.025s] +Building query seed array... [0.024s] +Computing hash join... [0s] +Masking low complexity seeds... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.011s] +Building reference seed array... [0.003s] +Building query seed array... [0.012s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.015s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.006s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] +Building reference seed array... [0.029s] +Building query seed array... [0.026s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.022s] +Building reference seed array... [0.026s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.02s] +Building query seed array... [0.019s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.012s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. Building reference seed array... [0.018s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] +Building query seed array... [0.015s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.038s] +Building query seed array... [0.011s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.018s] +Building query seed array... [0.011s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.022s] +Building reference seed array... [0.027s] Building query seed array... [0.023s] -Computing hash join... [0.011s] +Computing hash join... [0.004s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] +Building reference seed array... [0.029s] +Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.026s] +Building reference seed array... [0.03s] Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. Building reference seed array... [0.022s] -Building query seed array... [0.023s] +Building query seed array... [0.019s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.024s] -Building query seed array... [0.022s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.021s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. Building reference seed array... [0.026s] -Building query seed array... [0.023s] +Building query seed array... [0.02s] Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. +Building reference seed array... [0.022s] +Building query seed array... [0.022s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.019s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0.005s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.013s] -Building query seed array... [0.023s] -Computing hash join... [0.005s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.013s] +Building reference seed array... [0.014s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] +Building reference seed array... [0.004s] +Building query seed array... [0.004s] +Computing hash join... [0.001s] +Masking low complexity seeds... [0.003s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.018s] +Building query seed array... [0.008s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] +Building reference seed array... [0.031s] +Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] +Building reference seed array... [0.023s] +Building query seed array... [0.022s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] +Building reference seed array... [0.023s] +Building query seed array... [0.026s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.026s] +Building reference seed array... [0.023s] Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.003s] +Building reference seed array... [0.024s] +Building query seed array... [0.028s] +Computing hash join... [0.014s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.009s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.009s] +Building reference seed array... [0.025s] +Building query seed array... [0.022s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.031s] +Building reference seed array... [0.03s] Building query seed array... [0.027s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.015s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.027s] +Building reference seed array... [0.023s] Building query seed array... [0.023s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.017s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.007s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.013s] +Building reference seed array... [0.03s] +Building query seed array... [0.024s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.019s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.022s] +Building query seed array... [0.032s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.024s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.023s] +Building query seed array... [0.015s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.025s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.02s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.012s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] +Building reference seed array... [0.028s] +Building query seed array... [0.015s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] Computing alignments... Loading trace points... [0.031s] Sorting trace points... [0s] -Computing alignments... [0.011s] +Computing alignments... [0.014s] Deallocating buffers... [0.003s] Loading trace points... [0s] - [0.047s] + [0.051s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -7547,17 +7583,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 5.126s +Total time = 4.648s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/E.faa --out /tmp/tmp.J27HjrolZa/E.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/E.faa --out /tmp/tmp.5la2s1Wo43/E.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.J27HjrolZa +Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) @@ -7567,469 +7603,469 @@ Loading query sequences... [0s] Masking queries... [0.026s] Algorithm: Double-indexed -Building query histograms... [0.043s] +Building query histograms... [0.055s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.003s] +Masking reference... [0.015s] Initializing temporary storage... [0s] -Building reference histograms... [0.031s] +Building reference histograms... [0.024s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.003s] +Building reference seed array... [0.029s] +Building query seed array... [0.021s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.01s] -Building query seed array... [0.015s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] +Building reference seed array... [0.025s] +Building query seed array... [0.031s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.018s] -Building query seed array... [0.008s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.024s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.012s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.025s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.012s] -Computing hash join... [0.007s] +Building reference seed array... [0.03s] +Building query seed array... [0.028s] +Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Searching alignments... [0.019s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.019s] +Building query seed array... [0.015s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] +Building reference seed array... [0.022s] +Building query seed array... [0.027s] +Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.026s] +Building reference seed array... [0.022s] Building query seed array... [0.023s] -Computing hash join... [0.015s] +Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.014s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.023s] +Building reference seed array... [0.03s] Building query seed array... [0.023s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.015s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] +Building reference seed array... [0.026s] +Building query seed array... [0.02s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.015s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.02s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.011s] +Building reference seed array... [0.027s] Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] +Building reference seed array... [0.021s] +Building query seed array... [0.02s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.019s] +Building query seed array... [0.027s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.025s] +Building query seed array... [0.028s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.014s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] +Building reference seed array... [0.026s] +Building query seed array... [0.024s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Masking low complexity seeds... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.002s] -Searching alignments... [0s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.011s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] +Building query seed array... [0.016s] +Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. +Building reference seed array... [0.015s] +Building query seed array... [0.019s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.004s] +Searching alignments... [0.015s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.019s] +Building query seed array... [0.018s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] +Building reference seed array... [0.013s] +Building query seed array... [0.032s] +Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.031s] -Building query seed array... [0.027s] +Building reference seed array... [0.009s] +Building query seed array... [0.029s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.012s] -Building query seed array... [0.018s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] +Building reference seed array... [0.006s] +Building query seed array... [0.028s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.01s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.015s] -Building query seed array... [0.015s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.011s] +Building reference seed array... [0.022s] +Building query seed array... [0.027s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.015s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.007s] +Building reference seed array... [0.023s] +Building query seed array... [0.026s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.016s] -Building query seed array... [0.013s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0.002s] +Building reference seed array... [0.026s] +Building query seed array... [0.019s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.008s] -Building query seed array... [0.019s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.007s] +Building reference seed array... [0.01s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0.002s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.027s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.003s] +Building reference seed array... [0.026s] +Building query seed array... [0.031s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.001s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] -Computing hash join... [0.005s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.007s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.011s] -Building query seed array... [0.007s] +Building reference seed array... [0.019s] +Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. +Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0.026s] -Building query seed array... [0.024s] -Computing hash join... [0s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0s] +Building query seed array... [0.039s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.006s] +Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. +Building reference seed array... [0.018s] +Building query seed array... [0.015s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.025s] +Building query seed array... [0.019s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.015s] +Building reference seed array... [0.019s] +Building query seed array... [0.024s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.022s] -Building query seed array... [0.019s] +Building reference seed array... [0.023s] +Building query seed array... [0.03s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] +Building reference seed array... [0.025s] +Building query seed array... [0.024s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Masking low complexity seeds... [0.007s] Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.02s] -Building query seed array... [0.023s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0.022s] +Building query seed array... [0.024s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.022s] +Building query seed array... [0.019s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.023s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] +Building reference seed array... [0.026s] +Building query seed array... [0.024s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.011s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] +Building reference seed array... [0.018s] +Building query seed array... [0.027s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.022s] +Building query seed array... [0.027s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.013s] +Building reference seed array... [0.03s] +Building query seed array... [0.025s] +Computing hash join... [0s] +Masking low complexity seeds... [0.001s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.012s] +Building reference seed array... [0.021s] +Building query seed array... [0.028s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.028s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.024s] +Building query seed array... [0.027s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] +Building reference seed array... [0.023s] +Building query seed array... [0.027s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.019s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] +Building reference seed array... [0.018s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] +Building reference seed array... [0.014s] +Building query seed array... [0.019s] +Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.031s] -Building query seed array... [0.023s] +Building reference seed array... [0.018s] +Building query seed array... [0.024s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.013s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.012s] +Building query seed array... [0.011s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.012s] +Building reference seed array... [0.012s] +Building query seed array... [0.013s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.009s] +Building reference seed array... [0.018s] +Building query seed array... [0.027s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.005s] +Building reference seed array... [0.03s] +Building query seed array... [0.032s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.019s] -Computing hash join... [0.015s] +Building reference seed array... [0.014s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.017s] +Building reference seed array... [0.023s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.018s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.021s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.02s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.026s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.013s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.015s] +Building reference seed array... [0.026s] +Building query seed array... [0.028s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.007s] -Building query seed array... [0.019s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.013s] +Building reference seed array... [0.022s] +Building query seed array... [0.028s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.013s] +Building reference seed array... [0.014s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.004s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.011s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0s] +Building reference seed array... [0.034s] +Building query seed array... [0.022s] +Computing hash join... [0.005s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.035s] -Computing hash join... [0.002s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.007s] +Building query seed array... [0.018s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.004s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.008s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.011s] +Building reference seed array... [0.023s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.015s] -Computing hash join... [0.019s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.021s] +Building reference seed array... [0.03s] +Building query seed array... [0.023s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.017s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.034s] +Computing alignments... Loading trace points... [0.031s] Sorting trace points... [0s] -Computing alignments... [0.015s] -Deallocating buffers... [0.007s] +Computing alignments... [0.012s] +Deallocating buffers... [0s] Loading trace points... [0s] - [0.059s] + [0.046s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -8039,489 +8075,489 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 4.743s +Total time = 5.498s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --threads 1 --db test/L.faa.diamond --query test/M.faa --out /tmp/tmp.J27HjrolZa/M.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/L.faa.diamond --query test/M.faa --out /tmp/tmp.5la2s1Wo43/M.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.J27HjrolZa +Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 -Opening the database... [0.004s] +Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.042s] +Masking queries... [0.046s] Algorithm: Double-indexed Building query histograms... [0.031s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.011s] +Masking reference... [0.015s] Initializing temporary storage... [0s] -Building reference histograms... [0.035s] +Building reference histograms... [0.023s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] +Building reference seed array... [0.017s] +Building query seed array... [0.027s] +Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.019s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.024s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.015s] +Building reference seed array... [0.018s] +Building query seed array... [0.023s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.027s] +Building reference seed array... [0.023s] Building query seed array... [0.023s] -Computing hash join... [0.011s] +Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.021s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.019s] -Searching alignments... [0.015s] +Building reference seed array... [0.023s] +Building query seed array... [0.02s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] +Building reference seed array... [0.015s] +Building query seed array... [0.015s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] +Building reference seed array... [0.02s] +Building query seed array... [0.019s] Computing hash join... [0.012s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.013s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.02s] -Building query seed array... [0.022s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Building reference seed array... [0.021s] +Building query seed array... [0.02s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.019s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] Computing hash join... [0.007s] -Masking low complexity seeds... [0.012s] +Masking low complexity seeds... [0.003s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.031s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.007s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0.019s] -Building query seed array... [0.022s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.015s] +Building query seed array... [0.011s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.01s] +Building query seed array... [0.031s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] +Building reference seed array... [0.017s] +Building query seed array... [0.019s] +Computing hash join... [0.02s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.014s] -Building query seed array... [0.016s] +Building reference seed array... [0.024s] +Building query seed array... [0.015s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.03s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] +Building reference seed array... [0.021s] +Building query seed array... [0.007s] +Computing hash join... [0.003s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.015s] +Building query seed array... [0.008s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.019s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.026s] +Building reference seed array... [0.019s] Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.016s] -Building query seed array... [0.02s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.015s] +Building reference seed array... [0.023s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.021s] -Building query seed array... [0.022s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.006s] +Building reference seed array... [0.02s] +Building query seed array... [0.019s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.023s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.016s] -Building query seed array... [0.02s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.024s] -Building query seed array... [0.019s] -Computing hash join... [0.008s] +Building reference seed array... [0.03s] +Building query seed array... [0.028s] +Computing hash join... [0.007s] Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. +Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. Building reference seed array... [0.022s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] +Building query seed array... [0.024s] +Computing hash join... [0.007s] Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Searching alignments... [0.015s] +Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. +Building reference seed array... [0.014s] +Building query seed array... [0.021s] +Computing hash join... [0.005s] +Masking low complexity seeds... [0s] +Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.02s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.006s] +Building reference seed array... [0.001s] +Building query seed array... [0.012s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.017s] -Building query seed array... [0.015s] -Computing hash join... [0.007s] +Building reference seed array... [0.02s] +Building query seed array... [0.023s] +Computing hash join... [0.003s] Masking low complexity seeds... [0.008s] -Searching alignments... [0.018s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.02s] -Building query seed array... [0.019s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.004s] +Building reference seed array... [0.007s] +Building query seed array... [0.027s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] +Building reference seed array... [0.019s] +Building query seed array... [0.019s] Computing hash join... [0.012s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.014s] -Building query seed array... [0.015s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.007s] +Building reference seed array... [0.027s] +Building query seed array... [0.02s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.035s] -Building query seed array... [0.015s] -Computing hash join... [0.007s] +Building reference seed array... [0.014s] +Building query seed array... [0.024s] +Computing hash join... [0.01s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.032s] -Building query seed array... [0.023s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0.022s] +Building query seed array... [0.02s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.016s] +Building reference seed array... [0.024s] +Building query seed array... [0.023s] Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.013s] Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.015s] +Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. +Building reference seed array... [0.024s] +Building query seed array... [0.023s] Computing hash join... [0.008s] Masking low complexity seeds... [0.01s] -Searching alignments... [0.011s] +Searching alignments... [0.014s] +Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. +Building reference seed array... [0.023s] +Building query seed array... [0.012s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.016s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.004s] +Building reference seed array... [0.017s] +Building query seed array... [0.015s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.015s] -Building query seed array... [0.007s] -Computing hash join... [0.004s] +Building reference seed array... [0.019s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.003s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.012s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0.003s] +Building reference seed array... [0.019s] +Building query seed array... [0.019s] +Computing hash join... [0.004s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.017s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.005s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.022s] -Building query seed array... [0.007s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.007s] +Building reference seed array... [0.019s] +Building query seed array... [0.024s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.017s] -Computing hash join... [0.007s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] -Searching alignments... [0.006s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.016s] -Building query seed array... [0.015s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.007s] +Building reference seed array... [0.022s] +Building query seed array... [0.019s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.013s] -Building query seed array... [0.008s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.006s] +Building reference seed array... [0.022s] +Building query seed array... [0.007s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.016s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.013s] +Building reference seed array... [0.022s] +Building query seed array... [0.024s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0.026s] +Building query seed array... [0.031s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.02s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.01s] +Building reference seed array... [0.03s] +Building query seed array... [0.027s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.003s] +Building reference seed array... [0.022s] +Building query seed array... [0.019s] Computing hash join... [0.011s] Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.016s] -Building query seed array... [0.007s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.005s] +Building reference seed array... [0.005s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.018s] -Building query seed array... [0.012s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.013s] +Building reference seed array... [0.022s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.014s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] +Building reference seed array... [0.034s] +Building query seed array... [0.019s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.016s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.009s] +Building reference seed array... [0.025s] +Building query seed array... [0.015s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.009s] +Building reference seed array... [0.016s] +Building query seed array... [0.007s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.015s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.009s] +Building reference seed array... [0.013s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.016s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Building reference seed array... [0.027s] +Building query seed array... [0.027s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.008s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.02s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.009s] +Building reference seed array... [0.015s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.008s] +Building reference seed array... [0.011s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.009s] +Building reference seed array... [0.026s] +Building query seed array... [0.028s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.015s] -Building query seed array... [0.031s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Building reference seed array... [0.031s] +Building query seed array... [0.025s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.022s] -Building query seed array... [0.019s] +Building reference seed array... [0.014s] +Building query seed array... [0.008s] Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.003s] +Building reference seed array... [0.027s] +Building query seed array... [0.024s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.003s] +Building reference seed array... [0.023s] +Building query seed array... [0.02s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.005s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.003s] +Building reference seed array... [0.03s] +Building query seed array... [0.011s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.02s] -Building query seed array... [0.007s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.009s] +Building reference seed array... [0.018s] +Building query seed array... [0.02s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.024s] -Building query seed array... [0.03s] +Building reference seed array... [0.023s] +Building query seed array... [0.027s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.013s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Building reference seed array... [0.021s] +Building query seed array... [0.008s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.017s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.283s] +Computing alignments... Loading trace points... [0.319s] Sorting trace points... [0s] -Computing alignments... [0.241s] +Computing alignments... [0.405s] Deallocating buffers... [0s] Loading trace points... [0s] - [0.525s] + [0.728s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -8531,489 +8567,489 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 5.149s +Total time = 5.976s Reported 390 pairwise alignments, 390 HSPs. 39 queries aligned. -+ diamond blastp --threads 1 --db test/M.faa.diamond --query test/L.faa --out /tmp/tmp.J27HjrolZa/L.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/M.faa.diamond --query test/L.faa --out /tmp/tmp.5la2s1Wo43/L.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.J27HjrolZa +Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 -Opening the database... [0s] +Opening the database... [0.003s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.042s] +Masking queries... [0.049s] Algorithm: Double-indexed -Building query histograms... [0.031s] +Building query histograms... [0.035s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.007s] +Masking reference... [0.015s] Initializing temporary storage... [0s] Building reference histograms... [0.031s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.015s] +Building query seed array... [0.03s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.018s] +Building reference seed array... [0.025s] Building query seed array... [0.019s] -Computing hash join... [0.007s] +Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.016s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.022s] +Building query seed array... [0.007s] +Computing hash join... [0s] +Masking low complexity seeds... [0.001s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.015s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.019s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.02s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.023s] +Building query seed array... [0.024s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.007s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.016s] -Building query seed array... [0.015s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Building reference seed array... [0.008s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.016s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0s] -Searching alignments... [0.003s] +Building reference seed array... [0.024s] +Building query seed array... [0.023s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.01s] +Building reference seed array... [0.027s] +Building query seed array... [0.025s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.016s] -Building query seed array... [0.019s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.006s] +Building reference seed array... [0.024s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.012s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.006s] +Building reference seed array... [0.018s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.024s] +Building reference seed array... [0.023s] Building query seed array... [0.02s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.015s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.007s] -Building query seed array... [0.018s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.014s] +Building reference seed array... [0.004s] +Building query seed array... [0.004s] +Computing hash join... [0.002s] +Masking low complexity seeds... [0.001s] +Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.02s] -Building query seed array... [0.015s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.003s] +Building query seed array... [0.012s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.02s] -Building query seed array... [0.023s] +Building reference seed array... [0.03s] +Building query seed array... [0.011s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.004s] +Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.031s] +Building query seed array... [0.015s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.019s] +Building reference seed array... [0.015s] Building query seed array... [0.012s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.01s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.007s] -Building query seed array... [0.001s] -Computing hash join... [0.002s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0.008s] +Building query seed array... [0.02s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.019s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0s] -Searching alignments... [0.006s] +Building reference seed array... [0.024s] +Building query seed array... [0.023s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.01s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.011s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.005s] Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.001s] +Building reference seed array... [0.007s] Building query seed array... [0.001s] -Computing hash join... [0.005s] -Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.011s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Building reference seed array... [0.02s] +Building query seed array... [0.007s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.015s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.003s] +Building reference seed array... [0.023s] +Building query seed array... [0.024s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.007s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.003s] +Building reference seed array... [0.027s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.018s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.007s] +Building reference seed array... [0.02s] +Building query seed array... [0.022s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.007s] -Building query seed array... [0.007s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.024s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.016s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.015s] +Building reference seed array... [0.024s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] +Building reference seed array... [0.023s] +Building query seed array... [0.027s] Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.016s] +Building reference seed array... [0.028s] Building query seed array... [0.023s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.003s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.03s] +Building query seed array... [0.02s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] +Building reference seed array... [0.023s] +Building query seed array... [0.019s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.006s] +Building reference seed array... [0.023s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.02s] -Building query seed array... [0.019s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.006s] +Building reference seed array... [0.026s] +Building query seed array... [0.024s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.02s] -Building query seed array... [0.007s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.003s] +Building reference seed array... [0.028s] +Building query seed array... [0.023s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.007s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.003s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.015s] -Building query seed array... [0.007s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.027s] +Building query seed array... [0.019s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.011s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.009s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.012s] -Building query seed array... [0.02s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.014s] +Building reference seed array... [0.024s] +Building query seed array... [0.024s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.011s] -Building query seed array... [0.012s] -Computing hash join... [0.007s] +Building reference seed array... [0.027s] +Building query seed array... [0.024s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.003s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.018s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] +Building reference seed array... [0.023s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.02s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.013s] -Searching alignments... [0.012s] +Building reference seed array... [0.016s] +Building query seed array... [0.011s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.014s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.007s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.004s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] Masking low complexity seeds... [0.007s] -Searching alignments... [0.004s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.007s] -Building query seed array... [0.009s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.016s] +Building query seed array... [0.027s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.02s] -Building query seed array... [0.016s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.009s] +Building reference seed array... [0.019s] +Building query seed array... [0.024s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.018s] -Building query seed array... [0.02s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.013s] +Building reference seed array... [0.001s] +Building query seed array... [0.024s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.018s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.022s] -Building query seed array... [0.031s] -Computing hash join... [0.015s] +Building reference seed array... [0.023s] +Building query seed array... [0.022s] +Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.009s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.016s] -Building query seed array... [0.023s] +Building reference seed array... [0.027s] +Building query seed array... [0.031s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.016s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.016s] -Building query seed array... [0.023s] -Computing hash join... [0s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.008s] +Building reference seed array... [0.023s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.032s] -Building query seed array... [0.027s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.008s] +Building reference seed array... [0.025s] +Building query seed array... [0.02s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.02s] -Building query seed array... [0.019s] +Building reference seed array... [0.026s] +Building query seed array... [0.024s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.025s] +Building query seed array... [0.02s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.021s] +Building reference seed array... [0.031s] +Building query seed array... [0.024s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.023s] -Building query seed array... [0.02s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.008s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.016s] -Building query seed array... [0.016s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0.005s] -Searching alignments... [0.008s] +Building reference seed array... [0.027s] +Building query seed array... [0.024s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.02s] -Building query seed array... [0.027s] -Computing hash join... [0.012s] +Building reference seed array... [0.018s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.012s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.02s] +Building reference seed array... [0.023s] Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.006s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.013s] +Building reference seed array... [0.031s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.003s] +Building reference seed array... [0.027s] +Building query seed array... [0.007s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.007s] -Building query seed array... [0.021s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.024s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Building reference seed array... [0.03s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.012s] -Building query seed array... [0.016s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Building reference seed array... [0.026s] +Building query seed array... [0.031s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.02s] -Building query seed array... [0.02s] +Building reference seed array... [0.027s] +Building query seed array... [0.024s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.013s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.292s] +Computing alignments... Loading trace points... [0.362s] Sorting trace points... [0s] -Computing alignments... [0.229s] +Computing alignments... [0.411s] Deallocating buffers... [0s] Loading trace points... [0s] - [0.523s] + [0.775s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -9023,19 +9059,19 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 4.619s +Total time = 6.059s Reported 390 pairwise alignments, 390 HSPs. 40 queries aligned. -+ diamond blastp --ignore-warnings --threads 1 --db test/L.faa.diamond --query test/C2.faa --out /tmp/tmp.J27HjrolZa/C2.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --ignore-warnings --threads 1 --db test/L.faa.diamond --query test/C2.faa --out /tmp/tmp.5la2s1Wo43/C2.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.J27HjrolZa +Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 -Opening the database... [0.001s] +Opening the database... [0.004s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) Block size = 2000000000 Opening the input file... [0s] @@ -9043,469 +9079,469 @@ Loading query sequences... [0s] Masking queries... [0.013s] Algorithm: Double-indexed -Building query histograms... [0.001s] +Building query histograms... [0.021s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.001s] +Masking reference... [0.015s] Initializing temporary storage... [0s] -Building reference histograms... [0.005s] +Building reference histograms... [0.039s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.028s] -Building query seed array... [0.016s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.007s] +Building reference seed array... [0.027s] +Building query seed array... [0.028s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.011s] -Building query seed array... [0.032s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0s] -Searching alignments... [0.004s] +Building reference seed array... [0.029s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.018s] -Building query seed array... [0.015s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.007s] +Building reference seed array... [0.026s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0.011s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.016s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.03s] -Building query seed array... [0.016s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.015s] +Building reference seed array... [0.022s] +Building query seed array... [0.023s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.02s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.006s] +Building reference seed array... [0.024s] +Building query seed array... [0.022s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.011s] -Building query seed array... [0.007s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.007s] +Building reference seed array... [0.022s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.012s] -Building query seed array... [0.019s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.007s] +Building reference seed array... [0.022s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.02s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.024s] +Building query seed array... [0.023s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.015s] -Building query seed array... [0.007s] -Computing hash join... [0.003s] +Building reference seed array... [0.025s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.007s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.007s] -Building query seed array... [0.015s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.002s] -Searching alignments... [0.007s] +Building reference seed array... [0.025s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.011s] -Building query seed array... [0.011s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.007s] +Building reference seed array... [0.022s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.032s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.023s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.003s] +Building reference seed array... [0.022s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.007s] -Building query seed array... [0.006s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.026s] +Building query seed array... [0.027s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.015s] -Building query seed array... [0.007s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.003s] +Building reference seed array... [0.026s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.016s] -Building query seed array... [0.004s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.007s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.028s] -Building query seed array... [0.033s] -Computing hash join... [0.004s] +Building reference seed array... [0.027s] +Building query seed array... [0.023s] +Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.015s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.011s] +Building reference seed array... [0.022s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.024s] +Building reference seed array... [0.026s] Building query seed array... [0.023s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.011s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.013s] -Building query seed array... [0.022s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.007s] +Building reference seed array... [0.028s] +Building query seed array... [0.019s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.011s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.006s] +Building reference seed array... [0.027s] +Building query seed array... [0.023s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.016s] +Building reference seed array... [0.013s] Building query seed array... [0.015s] -Computing hash join... [0.008s] +Computing hash join... [0.012s] Masking low complexity seeds... [0.012s] -Searching alignments... [0.01s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0.023s] -Building query seed array... [0.015s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.008s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.018s] -Building query seed array... [0.015s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.007s] +Building reference seed array... [0.026s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.016s] -Building query seed array... [0.015s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.016s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.004s] +Building reference seed array... [0.027s] +Building query seed array... [0.019s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building query seed array... [0.022s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.022s] -Building query seed array... [0.021s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.007s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.007s] -Building query seed array... [0.015s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.007s] +Building reference seed array... [0.026s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.039s] +Building reference seed array... [0.026s] Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.011s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.016s] -Building query seed array... [0.015s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.003s] +Building reference seed array... [0.008s] +Building query seed array... [0.027s] +Computing hash join... [0.01s] +Masking low complexity seeds... [0.013s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.016s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.006s] +Building reference seed array... [0.028s] +Building query seed array... [0.019s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.009s] -Computing hash join... [0s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.011s] +Building reference seed array... [0.027s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.02s] -Building query seed array... [0.019s] -Computing hash join... [0.003s] +Building reference seed array... [0.023s] +Building query seed array... [0.027s] +Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.007s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. Building reference seed array... [0.027s] -Building query seed array... [0.007s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.018s] +Building query seed array... [0.026s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.015s] -Building query seed array... [0.013s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.006s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.004s] +Building reference seed array... [0.026s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.01s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.007s] -Building query seed array... [0.016s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.007s] +Building reference seed array... [0.022s] +Building query seed array... [0.023s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.015s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.006s] +Building reference seed array... [0.025s] +Building query seed array... [0.032s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.016s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.009s] +Building reference seed array... [0.026s] +Building query seed array... [0.027s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.024s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.006s] +Building reference seed array... [0.022s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.005s] +Building reference seed array... [0.026s] +Building query seed array... [0.024s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.007s] -Building query seed array... [0.003s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.001s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.015s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.005s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.02s] -Building query seed array... [0.004s] -Computing hash join... [0s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.005s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.031s] +Building reference seed array... [0.013s] Building query seed array... [0.015s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.003s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.016s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.007s] +Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. +Building reference seed array... [0.027s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.01s] +Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. +Building reference seed array... [0.029s] Building query seed array... [0.023s] -Computing hash join... [0.003s] +Computing hash join... [0.012s] Masking low complexity seeds... [0.011s] +Searching alignments... [0.017s] +Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. +Building reference seed array... [0.026s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.031s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.005s] +Building reference seed array... [0.03s] +Building query seed array... [0.027s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.016s] -Building query seed array... [0.004s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.013s] +Building reference seed array... [0.024s] +Building query seed array... [0.025s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.015s] -Building query seed array... [0.01s] -Computing hash join... [0s] +Building reference seed array... [0.014s] +Building query seed array... [0.015s] +Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.006s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.015s] -Building query seed array... [0.015s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.005s] +Building reference seed array... [0.022s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.008s] +Building reference seed array... [0.026s] Building query seed array... [0.023s] Computing hash join... [0.012s] -Masking low complexity seeds... [0.011s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.022s] +Building reference seed array... [0.022s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.016s] +Building reference seed array... [0.027s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.025s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.013s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.027s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.006s] +Building reference seed array... [0.01s] +Building query seed array... [0s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.015s] -Building query seed array... [0.03s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.005s] +Building reference seed array... [0.026s] +Building query seed array... [0.007s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.007s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.013s] +Building reference seed array... [0.027s] +Building query seed array... [0.027s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.001s] +Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.015s] -Building query seed array... [0.007s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0s] -Searching alignments... [0.005s] +Building reference seed array... [0.003s] +Building query seed array... [0s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.01s] -Building query seed array... [0.007s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.013s] +Building reference seed array... [0.022s] +Building query seed array... [0.031s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.011s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.017s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.018s] +Computing alignments... Loading trace points... [0.04s] Sorting trace points... [0s] -Computing alignments... [0.003s] -Deallocating buffers... [0s] +Computing alignments... [0.019s] +Deallocating buffers... [0.007s] Loading trace points... [0s] - [0.023s] + [0.068s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -9515,17 +9551,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 3.769s +Total time = 5.782s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/L.faa --out /tmp/tmp.J27HjrolZa/L.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/L.faa --out /tmp/tmp.5la2s1Wo43/L.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.J27HjrolZa +Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) @@ -9533,471 +9569,471 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.037s] +Masking queries... [0.05s] Algorithm: Double-indexed -Building query histograms... [0.007s] +Building query histograms... [0.005s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.001s] +Masking reference... [0.002s] Initializing temporary storage... [0s] -Building reference histograms... [0.001s] +Building reference histograms... [0.009s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.006s] -Building query seed array... [0.012s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.002s] -Searching alignments... [0.001s] +Building reference seed array... [0.031s] +Building query seed array... [0.024s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.014s] -Building query seed array... [0.008s] -Computing hash join... [0.003s] +Building reference seed array... [0.026s] +Building query seed array... [0.027s] +Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] -Searching alignments... [0.015s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] +Building query seed array... [0.024s] +Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] +Building reference seed array... [0.015s] +Building query seed array... [0.02s] +Computing hash join... [0.007s] Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.026s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.007s] +Building reference seed array... [0.024s] +Building query seed array... [0.02s] +Computing hash join... [0.018s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.012s] -Building query seed array... [0.019s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.007s] +Building reference seed array... [0.027s] +Building query seed array... [0.011s] +Computing hash join... [0s] +Masking low complexity seeds... [0.012s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.015s] -Building query seed array... [0.016s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.018s] +Building query seed array... [0.027s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.016s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.007s] +Building reference seed array... [0.023s] +Building query seed array... [0.027s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.02s] -Computing hash join... [0.008s] +Building reference seed array... [0.023s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.007s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.015s] +Building reference seed array... [0.022s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.019s] +Building reference seed array... [0.022s] Building query seed array... [0.023s] -Computing hash join... [0.007s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. Building reference seed array... [0.019s] Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.005s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.006s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.016s] +Building reference seed array... [0.026s] Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.007s] +Building reference seed array... [0.023s] +Building query seed array... [0.016s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.018s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.003s] +Building reference seed array... [0.023s] +Building query seed array... [0.026s] +Computing hash join... [0.005s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.003s] -Building query seed array... [0.007s] -Computing hash join... [0.003s] +Building reference seed array... [0.02s] +Building query seed array... [0.022s] +Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] -Searching alignments... [0.007s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.007s] -Building query seed array... [0.007s] -Computing hash join... [0.003s] +Building reference seed array... [0.031s] +Building query seed array... [0.02s] +Computing hash join... [0.007s] Masking low complexity seeds... [0.003s] -Searching alignments... [0.003s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.007s] -Building query seed array... [0.007s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.003s] +Building reference seed array... [0.028s] +Building query seed array... [0.02s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.011s] -Building query seed array... [0.007s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.003s] +Building reference seed array... [0.026s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.015s] -Building query seed array... [0.007s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.003s] +Building reference seed array... [0.011s] +Building query seed array... [0.004s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.012s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.024s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.01s] Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.015s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.007s] +Building reference seed array... [0.025s] +Building query seed array... [0.029s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.007s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.003s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.015s] +Building reference seed array... [0.015s] +Building query seed array... [0.02s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Masking low complexity seeds... [0.007s] Searching alignments... [0.007s] Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. +Building reference seed array... [0.02s] +Building query seed array... [0.023s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.01s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.009s] -Building query seed array... [0.009s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.001s] +Building reference seed array... [0.02s] +Building query seed array... [0.016s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.016s] -Building query seed array... [0.015s] +Building reference seed array... [0.015s] +Building query seed array... [0.016s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Masking low complexity seeds... [0.004s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.013s] +Building reference seed array... [0.019s] +Building query seed array... [0.019s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.018s] -Building query seed array... [0.007s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.007s] +Building reference seed array... [0.031s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.008s] -Building query seed array... [0.015s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.008s] +Building reference seed array... [0.023s] +Building query seed array... [0.027s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.007s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.011s] +Building reference seed array... [0.02s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.012s] -Building query seed array... [0.015s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.011s] +Building reference seed array... [0.015s] +Building query seed array... [0.007s] +Computing hash join... [0s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.015s] +Building reference seed array... [0.007s] +Building query seed array... [0.008s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.019s] +Building reference seed array... [0.007s] +Building query seed array... [0.027s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.016s] -Building query seed array... [0.021s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.007s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.012s] -Building query seed array... [0.019s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Building reference seed array... [0.026s] +Building query seed array... [0.023s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.015s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.014s] +Building reference seed array... [0.022s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.018s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.008s] -Building query seed array... [0.007s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.009s] +Building reference seed array... [0.024s] +Building query seed array... [0.015s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.02s] -Building query seed array... [0.011s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0.008s] +Building reference seed array... [0.019s] +Building query seed array... [0.022s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.005s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.007s] -Building query seed array... [0.031s] +Building reference seed array... [0.022s] +Building query seed array... [0.02s] Computing hash join... [0.007s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.022s] +Masking low complexity seeds... [0.006s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] +Building reference seed array... [0.018s] +Building query seed array... [0.018s] +Computing hash join... [0.006s] +Masking low complexity seeds... [0.009s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.02s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.006s] +Building reference seed array... [0.018s] +Building query seed array... [0.025s] +Computing hash join... [0.013s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.015s] -Building query seed array... [0.02s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.021s] +Building query seed array... [0.024s] +Computing hash join... [0.009s] +Masking low complexity seeds... [0.003s] Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.009s] +Building reference seed array... [0.022s] +Building query seed array... [0.019s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.016s] -Building query seed array... [0.022s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.009s] +Building reference seed array... [0.018s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.02s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.013s] +Building reference seed array... [0.015s] +Building query seed array... [0.007s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] +Building reference seed array... [0.016s] +Building query seed array... [0.027s] +Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.018s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.004s] +Building reference seed array... [0.026s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.01s] -Building query seed array... [0.027s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.004s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.007s] +Building reference seed array... [0.023s] +Building query seed array... [0.023s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0s] Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.016s] -Building query seed array... [0.019s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.013s] -Searching alignments... [0.014s] +Building reference seed array... [0.019s] +Building query seed array... [0.02s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.02s] +Building reference seed array... [0.019s] +Building query seed array... [0.027s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.005s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.007s] -Building query seed array... [0.011s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.009s] +Building reference seed array... [0.023s] +Building query seed array... [0.019s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.01s] -Building query seed array... [0.001s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.02s] +Building query seed array... [0.023s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.021s] -Building query seed array... [0.019s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0.027s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.017s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.015s] +Building reference seed array... [0.027s] +Building query seed array... [0.031s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.021s] -Building query seed array... [0.011s] +Building reference seed array... [0.027s] +Building query seed array... [0.028s] Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.005s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.022s] -Building query seed array... [0.02s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.006s] +Building reference seed array... [0.023s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.024s] +Building reference seed array... [0.024s] +Building query seed array... [0.028s] Computing hash join... [0.007s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.001s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.011s] +Building reference seed array... [0.027s] Building query seed array... [0.016s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.004s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.031s] -Building query seed array... [0.012s] Computing hash join... [0.007s] -Masking low complexity seeds... [0.008s] +Masking low complexity seeds... [0.011s] Searching alignments... [0.009s] Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. +Building reference seed array... [0.024s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.005s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.016s] -Building query seed array... [0.018s] -Computing hash join... [0.005s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.01s] +Building reference seed array... [0.015s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.015s] -Computing hash join... [0s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] +Building query seed array... [0.027s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] Searching alignments... [0.009s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.038s] +Computing alignments... Loading trace points... [0.04s] Sorting trace points... [0s] -Computing alignments... [0.011s] -Deallocating buffers... [0.007s] +Computing alignments... [0.009s] +Deallocating buffers... [0s] Loading trace points... [0s] - [0.059s] + [0.05s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -10007,17 +10043,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 4.005s +Total time = 4.974s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --ignore-warnings --threads 1 --db test/M.faa.diamond --query test/C2.faa --out /tmp/tmp.J27HjrolZa/C2.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --ignore-warnings --threads 1 --db test/M.faa.diamond --query test/C2.faa --out /tmp/tmp.5la2s1Wo43/C2.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.J27HjrolZa +Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) @@ -10027,469 +10063,469 @@ Loading query sequences... [0s] Masking queries... [0.008s] Algorithm: Double-indexed -Building query histograms... [0.023s] +Building query histograms... [0.026s] Seeking in database... [0s] Loading reference sequences... [0s] Masking reference... [0.011s] -Initializing temporary storage... [0.001s] -Building reference histograms... [0.018s] +Initializing temporary storage... [0s] +Building reference histograms... [0.031s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.027s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.011s] +Building reference seed array... [0.023s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.013s] -Computing hash join... [0.018s] -Masking low complexity seeds... [0.004s] +Building reference seed array... [0.027s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.007s] +Building reference seed array... [0.023s] +Building query seed array... [0.031s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.016s] +Building reference seed array... [0.02s] Building query seed array... [0.019s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.007s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.016s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.007s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.011s] Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. +Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0.02s] -Building query seed array... [0.007s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0.002s] +Building query seed array... [0.027s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0s] Searching alignments... [0s] -Deallocating memory... [0.001s] +Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. +Building reference seed array... [0.011s] +Building query seed array... [0.015s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.007s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.023s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.019s] +Building query seed array... [0.02s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.016s] +Building reference seed array... [0.024s] Building query seed array... [0.019s] Computing hash join... [0.007s] Masking low complexity seeds... [0.004s] -Searching alignments... [0.007s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.028s] +Building reference seed array... [0.028s] +Building query seed array... [0.027s] Computing hash join... [0.007s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.02s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.011s] +Building reference seed array... [0.02s] +Building query seed array... [0.023s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.035s] -Building query seed array... [0.024s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.02s] +Building query seed array... [0.023s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.007s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.003s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.011s] +Building reference seed array... [0.024s] +Building query seed array... [0.023s] Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.007s] Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.011s] -Building query seed array... [0.032s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.015s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.015s] -Building query seed array... [0.015s] +Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. +Building reference seed array... [0.03s] +Building query seed array... [0.02s] Computing hash join... [0.007s] Masking low complexity seeds... [0.008s] -Searching alignments... [0.01s] +Searching alignments... [0.011s] Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] +Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. +Building reference seed array... [0.024s] +Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.008s] -Searching alignments... [0.011s] +Searching alignments... [0.006s] Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. +Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.004s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] Masking low complexity seeds... [0.004s] +Searching alignments... [0.011s] +Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. +Building reference seed array... [0.015s] +Building query seed array... [0.011s] +Computing hash join... [0.004s] +Masking low complexity seeds... [0s] +Searching alignments... [0.01s] +Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. +Building reference seed array... [0.016s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.024s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.006s] +Building reference seed array... [0.016s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.02s] +Building reference seed array... [0.024s] +Building query seed array... [0.015s] Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.031s] -Building query seed array... [0.02s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.007s] +Computing hash join... [0.004s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.027s] +Building query seed array... [0.015s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.016s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.013s] +Building reference seed array... [0.007s] +Building query seed array... [0.012s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.026s] +Building reference seed array... [0.019s] Building query seed array... [0.023s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.007s] +Building query seed array... [0.019s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.013s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.022s] +Building query seed array... [0.007s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.007s] -Building query seed array... [0.02s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.002s] +Building reference seed array... [0.026s] +Building query seed array... [0.031s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.016s] +Building query seed array... [0.023s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.041s] -Building query seed array... [0.012s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.026s] +Building reference seed array... [0.023s] Building query seed array... [0.011s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0.011s] +Computing hash join... [0.004s] +Masking low complexity seeds... [0.004s] Searching alignments... [0.006s] Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. +Building reference seed array... [0.019s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.014s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.026s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.02s] +Building query seed array... [0.019s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.015s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] +Building reference seed array... [0.027s] +Building query seed array... [0.027s] +Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.02s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.013s] -Searching alignments... [0.013s] +Building reference seed array... [0.027s] +Building query seed array... [0.024s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.02s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.005s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.012s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.01s] +Building reference seed array... [0.01s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. Building reference seed array... [0.027s] -Building query seed array... [0.019s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.02s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0.028s] +Building query seed array... [0.007s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.005s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.02s] -Building query seed array... [0.015s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.006s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.019s] +Building reference seed array... [0.001s] Building query seed array... [0.016s] Computing hash join... [0.003s] Masking low complexity seeds... [0.004s] -Searching alignments... [0.005s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.012s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.007s] Searching alignments... [0.006s] Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.028s] +Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. +Building reference seed array... [0.011s] Building query seed array... [0.011s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] +Computing hash join... [0.004s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.01s] +Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. +Building reference seed array... [0.027s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.008s] Searching alignments... [0.013s] Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. +Building reference seed array... [0.03s] +Building query seed array... [0.023s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.01s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.027s] +Building reference seed array... [0.022s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.01s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.029s] +Building reference seed array... [0.03s] Building query seed array... [0.023s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.022s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.027s] +Building query seed array... [0.02s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.022s] -Building query seed array... [0.007s] +Building reference seed array... [0.02s] +Building query seed array... [0.023s] Computing hash join... [0.007s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.01s] -Building query seed array... [0.002s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.02s] +Building query seed array... [0.027s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.002s] +Building reference seed array... [0.024s] Building query seed array... [0.018s] -Computing hash join... [0.005s] -Masking low complexity seeds... [0.002s] -Searching alignments... [0.001s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] +Building reference seed array... [0.024s] +Building query seed array... [0.043s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.014s] Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.008s] -Building query seed array... [0.007s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0s] +Building reference seed array... [0.022s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.003s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.012s] -Building query seed array... [0.008s] -Computing hash join... [0.002s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.028s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.01s] -Building query seed array... [0.007s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.006s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.016s] -Computing hash join... [0.015s] +Building reference seed array... [0.034s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.013s] Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. +Building reference seed array... [0.031s] +Building query seed array... [0.027s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0.018s] -Building query seed array... [0.007s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.005s] +Building query seed array... [0.027s] +Computing hash join... [0.016s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. Building reference seed array... [0.027s] -Building query seed array... [0.003s] -Computing hash join... [0s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.005s] +Building query seed array... [0.027s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.02s] -Computing hash join... [0.011s] +Building reference seed array... [0.003s] +Building query seed array... [0s] +Computing hash join... [0.001s] Masking low complexity seeds... [0s] -Searching alignments... [0.003s] +Searching alignments... [0.01s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.002s] -Building query seed array... [0.013s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.011s] +Building query seed array... [0.006s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.011s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.015s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.015s] -Building query seed array... [0.023s] +Building reference seed array... [0.026s] +Building query seed array... [0.029s] Computing hash join... [0.012s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.02s] -Building query seed array... [0.027s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.02s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.015s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.026s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Building reference seed array... [0.026s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.005s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.007s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0s] +Building reference seed array... [0.028s] +Building query seed array... [0.027s] +Computing hash join... [0.008s] +Masking low complexity seeds... [0.007s] +Searching alignments... [0.009s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.002s] +Computing alignments... Loading trace points... [0.026s] Sorting trace points... [0s] -Computing alignments... [0.003s] -Deallocating buffers... [0s] +Computing alignments... [0.015s] +Deallocating buffers... [0.007s] Loading trace points... [0s] - [0.006s] + [0.051s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -10499,489 +10535,489 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 3.656s +Total time = 5.03s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/M.faa --out /tmp/tmp.J27HjrolZa/M.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/M.faa --out /tmp/tmp.5la2s1Wo43/M.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.J27HjrolZa +Temporary directory: /tmp/tmp.5la2s1Wo43 #Target sequences to report alignments for: 25 -Opening the database... [0s] +Opening the database... [0.003s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.019s] +Masking queries... [0.055s] Algorithm: Double-indexed -Building query histograms... [0.027s] +Building query histograms... [0.035s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.008s] +Masking reference... [0.015s] Initializing temporary storage... [0s] -Building reference histograms... [0.019s] +Building reference histograms... [0.031s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.01s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.02s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] +Building reference seed array... [0.026s] +Building query seed array... [0.027s] +Computing hash join... [0.004s] +Masking low complexity seeds... [0.011s] Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.015s] +Building reference seed array... [0.028s] +Building query seed array... [0.024s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.019s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] +Building reference seed array... [0.036s] +Building query seed array... [0.035s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.023s] +Building reference seed array... [0.028s] Building query seed array... [0.031s] -Computing hash join... [0.011s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] +Building reference seed array... [0.034s] +Building query seed array... [0.031s] Computing hash join... [0.015s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.016s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. Building reference seed array... [0.027s] -Building query seed array... [0.025s] -Computing hash join... [0.014s] +Building query seed array... [0.024s] +Computing hash join... [0.008s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.026s] +Building reference seed array... [0.031s] Building query seed array... [0.024s] -Computing hash join... [0.011s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.008s] +Searching alignments... [0.011s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.015s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Building reference seed array... [0s] +Building query seed array... [0.02s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] +Building reference seed array... [0.027s] +Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.015s] -Computing hash join... [0.015s] +Building reference seed array... [0.027s] +Building query seed array... [0.024s] +Computing hash join... [0.011s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.01s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. Building reference seed array... [0.03s] -Building query seed array... [0.023s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building query seed array... [0.015s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.027s] +Computing hash join... [0.031s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.031s] +Building query seed array... [0.027s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.024s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.031s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.018s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] +Building reference seed array... [0.028s] +Building query seed array... [0.03s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.022s] -Building query seed array... [0.019s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.008s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Building reference seed array... [0.018s] +Building query seed array... [0.028s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.031s] -Building query seed array... [0.025s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.019s] -Searching alignments... [0.015s] +Building reference seed array... [0.029s] +Building query seed array... [0.024s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.033s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.012s] +Searching alignments... [0.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Building reference seed array... [0.026s] +Building query seed array... [0.031s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.001s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0.002s] +Building reference seed array... [0.022s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.018s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.022s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.016s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.008s] -Building query seed array... [0.014s] -Computing hash join... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.016s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.021s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.007s] +Building reference seed array... [0.01s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. Building reference seed array... [0.03s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.015s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.027s] +Building query seed array... [0.03s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.007s] -Building query seed array... [0.026s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.006s] +Building reference seed array... [0.03s] +Building query seed array... [0.019s] +Computing hash join... [0.003s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.018s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.014s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.008s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.02s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] +Building reference seed array... [0.031s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] +Building reference seed array... [0.024s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.023s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.009s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.01s] -Building query seed array... [0.007s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0s] +Building reference seed array... [0.023s] +Building query seed array... [0.024s] +Computing hash join... [0.023s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0s] -Building query seed array... [0.001s] -Computing hash join... [0s] -Masking low complexity seeds... [0s] -Searching alignments... [0.011s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.015s] -Building query seed array... [0.019s] +Building reference seed array... [0.03s] +Building query seed array... [0.02s] Computing hash join... [0.015s] Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] +Searching alignments... [0.01s] +Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. +Building reference seed array... [0.033s] +Building query seed array... [0.015s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0s] +Searching alignments... [0.007s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.017s] +Building reference seed array... [0.011s] +Building query seed array... [0.012s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.023s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.023s] +Building reference seed array... [0.022s] Building query seed array... [0.027s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.031s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.013s] +Building reference seed array... [0.019s] +Building query seed array... [0.02s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.027s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.013s] -Deallocating memory... [0s] -Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.026s] +Building reference seed array... [0.03s] Building query seed array... [0.024s] -Computing hash join... [0.007s] +Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Searching alignments... [0.009s] +Deallocating memory... [0s] +Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. +Building reference seed array... [0.027s] +Building query seed array... [0.035s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.012s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.011s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.024s] +Building query seed array... [0.031s] +Computing hash join... [0.007s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0.03s] -Building query seed array... [0.019s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.017s] +Building query seed array... [0.026s] +Computing hash join... [0.017s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.022s] -Building query seed array... [0.02s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.021s] +Building reference seed array... [0.023s] +Building query seed array... [0.021s] +Computing hash join... [0.014s] +Masking low complexity seeds... [0.019s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] +Building reference seed array... [0.023s] +Building query seed array... [0.024s] +Computing hash join... [0.015s] Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.019s] -Searching alignments... [0.013s] +Building reference seed array... [0.03s] +Building query seed array... [0.031s] +Computing hash join... [0.019s] +Masking low complexity seeds... [0.008s] +Searching alignments... [0.021s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.022s] -Building query seed array... [0.024s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.021s] +Building reference seed array... [0.026s] +Building query seed array... [0.023s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.011s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.026s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.013s] +Building reference seed array... [0.026s] +Building query seed array... [0.027s] +Computing hash join... [0.011s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.009s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.013s] +Building reference seed array... [0.023s] +Building query seed array... [0.043s] +Computing hash join... [0.015s] +Masking low complexity seeds... [0.015s] +Searching alignments... [0.017s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.027s] +Building reference seed array... [0.023s] +Building query seed array... [0.031s] Computing hash join... [0.011s] Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Searching alignments... [0.013s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.025s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.013s] +Building reference seed array... [0.024s] +Building query seed array... [0.004s] +Computing hash join... [0.001s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.013s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.006s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.03s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.013s] +Building reference seed array... [0.012s] +Building query seed array... [0.015s] +Computing hash join... [0.012s] +Masking low complexity seeds... [0.018s] +Searching alignments... [0.009s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.046s] +Computing alignments... Loading trace points... [0.042s] Sorting trace points... [0s] Computing alignments... [0.015s] -Deallocating buffers... [0.007s] +Deallocating buffers... [0.004s] Loading trace points... [0s] - [0.071s] + [0.063s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -10991,10 +11027,10 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 4.868s +Total time = 6.389s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ rm -rf /tmp/tmp.J27HjrolZa ++ rm -rf /tmp/tmp.5la2s1Wo43 make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9' create-stamp debian/debhelper-build-stamp dh_prep @@ -11044,12 +11080,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3249741/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3249741/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/870888 and its subdirectories -I: Current time: Thu Sep 26 18:10:27 -12 2024 -I: pbuilder-time-stamp: 1727417427 +I: removing directory /srv/workspace/pbuilder/3249741 and its subdirectories +I: Current time: Fri Oct 31 02:41:59 +14 2025 +I: pbuilder-time-stamp: 1761828119 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/diamond-aligner_2.1.9-1.diff: 94.5% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/diamond-aligner_2.1.9-1.diff.gz b2/build.log: 95.1% -- replaced with stdout Compressing the 1st log... b1/build.log: 95.1% -- replaced with stdout Fri Sep 27 06:19:06 UTC 2024 I: diffoscope 277 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_diamond-aligner_unstable_arm64_1727417946 + touch /var/log/reproducible-builds/diffoscope_stamp_diamond-aligner_unstable_arm64_1727417946 + RESULT=0 + systemd-run '--description=diffoscope on diamond-aligner/2.1.9-1 in unstable/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_4-37288 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq --run-session -c jenkins-reproducible-unstable-diffoscope-610b9975-0c95-41ca-a31a-0b29f0c21c1e -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq/dbd-tmp-uNvmNAr ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq/diamond-aligner_2.1.9-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq/diamond-aligner_2.1.9-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq/diamond-aligner_2.1.9-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq/b1/diamond-aligner_2.1.9-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq/b2/diamond-aligner_2.1.9-1_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_4-37288.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq/diamond-aligner_2.1.9-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq/diamond-aligner_2.1.9-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq/diamond-aligner_2.1.9-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq/b1/diamond-aligner_2.1.9-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.4bXzRojq/b2/diamond-aligner_2.1.9-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.867s) 0.867s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.436s) 0.436s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1.265s CPU time consumed: 1.260s _ _ _ _ _ __| (_) __ _ _ __ ___ ___ _ __ __| | __ _| (_) __ _ _ __ ___ / _` | |/ _` | '_ ` _ \ / _ \| '_ \ / _` |_____ / _` | | |/ _` | '_ \ / _ \ | (_| | | (_| | | | | | | (_) | | | | (_| |_____| (_| | | | (_| | | | | __/ \__,_|_|\__,_|_| |_| |_|\___/|_| |_|\__,_| \__,_|_|_|\__, |_| |_|\___| |___/ _ __ | '__| | | |_| Fri Sep 27 06:19:07 UTC 2024 I: diffoscope 277 found no differences in the changes files, and a .buildinfo file also exists. Fri Sep 27 06:19:07 UTC 2024 I: diamond-aligner from unstable built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-09-27 06:19:08] INFO: Starting at 2024-09-27 06:19:08.490830 [2024-09-27 06:19:08] INFO: Generating the pages of 1 package(s) [2024-09-27 06:19:08] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/arm64/diamond-aligner didn't produce a buildlog, even though it has been built. [2024-09-27 06:19:08] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/diamond-aligner_2.1.9-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/diamond-aligner_2.1.9-1.diff.gz is missing [2024-09-27 06:19:08] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/diamond-aligner_2.1.9-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/diamond-aligner_2.1.9-1.diff.gz is missing [2024-09-27 06:19:08] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/diamond-aligner_2.1.9-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/diamond-aligner_2.1.9-1.diff.gz is missing [2024-09-27 06:19:08] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/diamond-aligner_2.1.9-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/diamond-aligner_2.1.9-1.diff.gz is missing [2024-09-27 06:19:09] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/diamond-aligner_2.1.3-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/diamond-aligner_2.1.3-1.diff.gz is missing [2024-09-27 06:19:09] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/diamond-aligner_2.1.3-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/diamond-aligner_2.1.3-1.diff.gz is missing [2024-09-27 06:19:09] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/diamond-aligner_2.0.7-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/diamond-aligner_2.0.7-1.diff.gz is missing [2024-09-27 06:19:09] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/diamond-aligner_2.0.7-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/diamond-aligner_2.0.7-1.diff.gz is missing [2024-09-27 06:19:09] INFO: Finished at 2024-09-27 06:19:09.086068, took: 0:00:00.595243 Fri Sep 27 06:19:09 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/arm64/diamond-aligner.html Fri Sep 27 06:19:09 UTC 2024 I: Submitting .buildinfo files to external archives: Fri Sep 27 06:19:09 UTC 2024 I: Submitting 8.0K b1/diamond-aligner_2.1.9-1_arm64.buildinfo.asc https://buildinfo.debian.net/36bab26c46578059f148c33686993944fc2f6213/diamond-aligner_2.1.9-1_arm64 Fri Sep 27 06:19:10 UTC 2024 I: Submitting 8.0K b2/diamond-aligner_2.1.9-1_arm64.buildinfo.asc https://buildinfo.debian.net/429481ca7d295718d983eff5e91fb851007fa474/diamond-aligner_2.1.9-1_arm64 Fri Sep 27 06:19:11 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Sep 27 06:19:11 UTC 2024 I: Done submitting .buildinfo files. Fri Sep 27 06:19:11 UTC 2024 I: Removing signed diamond-aligner_2.1.9-1_arm64.buildinfo.asc files: removed './b1/diamond-aligner_2.1.9-1_arm64.buildinfo.asc' removed './b2/diamond-aligner_2.1.9-1_arm64.buildinfo.asc' 1727417951 arm64 unstable diamond-aligner Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/diamond-aligner_2.1.9-1.rbuild.log: 94.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/diamond-aligner_2.1.9-1.rbuild.log.gz [2024-09-27 06:19:11] INFO: Starting at 2024-09-27 06:19:11.442944 [2024-09-27 06:19:11] INFO: Generating the pages of 1 package(s) [2024-09-27 06:19:11] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/diamond-aligner_2.1.9-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/diamond-aligner_2.1.9-1.diff.gz is missing [2024-09-27 06:19:11] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/diamond-aligner_2.1.9-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/diamond-aligner_2.1.9-1.diff.gz is missing [2024-09-27 06:19:11] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/diamond-aligner_2.1.9-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/diamond-aligner_2.1.9-1.diff.gz is missing [2024-09-27 06:19:11] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/diamond-aligner_2.1.9-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/diamond-aligner_2.1.9-1.diff.gz is missing [2024-09-27 06:19:11] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/diamond-aligner_2.1.3-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/diamond-aligner_2.1.3-1.diff.gz is missing [2024-09-27 06:19:11] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/diamond-aligner_2.1.3-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/diamond-aligner_2.1.3-1.diff.gz is missing [2024-09-27 06:19:12] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/diamond-aligner_2.0.7-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/diamond-aligner_2.0.7-1.diff.gz is missing [2024-09-27 06:19:12] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/diamond-aligner_2.0.7-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/diamond-aligner_2.0.7-1.diff.gz is missing [2024-09-27 06:19:12] INFO: Finished at 2024-09-27 06:19:12.045525, took: 0:00:00.602587 All cleanup done. Fri Sep 27 06:19:12 UTC 2024 - total duration: 0h 15m 53s. Fri Sep 27 06:19:12 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-wVoXTMch, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 15min 57.479s CPU time consumed: 13.714s