Running as unit: rb-build-arm64_4-37307.service ==================================================================================== Fri Sep 27 07:23:04 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_4) on jenkins, called using "codethink02-arm64 codethink01-arm64" as arguments. Fri Sep 27 07:23:04 UTC 2024 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-x2sSACFB" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Sep 27 07:23:04 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink02-arm64.debian.net is marked as down. Fri Sep 27 07:23:04 UTC 2024 - checking via ssh if codethink02-arm64.debian.net is up. removed '/tmp/read-only-fs-test-fJvVTK' Fri Sep 27 07:23:05 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink01-arm64.debian.net is marked as down. Fri Sep 27 07:23:05 UTC 2024 - checking via ssh if codethink01-arm64.debian.net is up. removed '/tmp/read-only-fs-test-QXG32z' ok, let's check if ngmlr is building anywhere yet… ok, ngmlr is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of ngmlr in trixie on arm64 on jenkins now. 1st build will be done on codethink02-arm64.debian.net. 2nd build will be done on codethink01-arm64.debian.net. ============================================================================= Fri Sep 27 07:23:15 UTC 2024 I: starting to build ngmlr/trixie/arm64 on jenkins on '2024-09-27 07:23' Fri Sep 27 07:23:15 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_4/37307/console.log 1727421795 arm64 trixie ngmlr Fri Sep 27 07:23:15 UTC 2024 I: Downloading source for trixie/ngmlr=0.2.7+git20210816.a2a31fb+dfsg-2 --2024-09-27 07:23:16-- http://deb.debian.org/debian/pool/main/n/ngmlr/ngmlr_0.2.7%2bgit20210816.a2a31fb%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2209 (2.2K) [text/prs.lines.tag] Saving to: ‘ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc’ 0K .. 100% 264M=0s 2024-09-27 07:23:16 (264 MB/s) - ‘ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc’ saved [2209/2209] --2024-09-27 07:23:16-- http://deb.debian.org/debian/pool/main/n/ngmlr/ngmlr_0.2.7%2bgit20210816.a2a31fb%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2209 (2.2K) [text/prs.lines.tag] Saving to: ‘ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc’ 0K .. 100% 264M=0s 2024-09-27 07:23:16 (264 MB/s) - ‘ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc’ saved [2209/2209] Fri Sep 27 07:23:16 UTC 2024 I: ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: ngmlr Binary: ngmlr Architecture: any Version: 0.2.7+git20210816.a2a31fb+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Nilesh Patra Homepage: https://github.com/philres/ngmlr Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/ngmlr Vcs-Git: https://salsa.debian.org/med-team/ngmlr.git Testsuite: autopkgtest Testsuite-Triggers: bedtools, samtools Build-Depends: debhelper-compat (= 13), cmake, zlib1g-dev, libssw-dev, libtclap-dev, libhts-dev, libsimde-dev Package-List: ngmlr deb science optional arch=any Checksums-Sha1: 162e7971ec0b0a830c2ff517f2fe83ccc36b30fd 667893 ngmlr_0.2.7+git20210816.a2a31fb+dfsg.orig.tar.gz d242cf198d0aa22b3ff3f682707f72a2424b8352 8084 ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.debian.tar.xz Checksums-Sha256: df7d9a0074b4d5d307258b8f23e1df2960f6af071bac07c41e64d38ef442592d 667893 ngmlr_0.2.7+git20210816.a2a31fb+dfsg.orig.tar.gz e919ef334b228ca2e49701a28f0a5f40939a1fb0d3c5a0fe83032ca14d32cba1 8084 ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.debian.tar.xz Files: 3f5470714ec6bf26aa5e24df22e66b92 667893 ngmlr_0.2.7+git20210816.a2a31fb+dfsg.orig.tar.gz 2efd9c80430797646299ab17ae555b6c 8084 ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmFoIRoSHG5pbGVzaEBk ZWJpYW4ub3JnAAoJEAC650s0M2nx4XkP/3Ia0pduXZczXZ4lJp65pwxVe6kj6ENu iTUenTZUJuKigqMmSExqNR+isiCIuc9azXOoSImsEQgV5ioNECb7o7D6n0EfjIpz 4wgqAxzS+PtPbdjd3mYMU6tSUNOdGfU3H3Ruzh83G1X/E3QmpHqiig4A2oQ4775D gp5TzI80ibdd7JGPSvrxQv3dZ7fWkLMoFFSkn2DKES9Nt6X4ohsiAUs0TADkbVu0 1+QCJXqG+BguGEK1XDac9imKJ9NaVA+rTBjRoQaEbAGfwX5HICjhRnayY4d0oDU8 k74DVUFdgRkMd7bzYdBpxVtYwjkLXisXP5lIsrIEwQDBZvL6lxFMHK/UHU946vC7 S+8Fn3c4L8lCpOcuKLv0z48YyvmCUFMy+jgQuw/Nx2obyjAvP7BpKcRg8yQKBqfX 1Bbdu0r3s0Lv8lzYs/8Ui6Ww4g2E9U9YApTnjmkiyGk/rpg9RHbfBSbNwVZBu2zs nKPSVrSAyeKWFuOpZZFNowhuvFkuytVB7l9N68AAa8LkgwPV7sgjXeL+pU4zWqxv iayLUFirV10K5zIBh7+N4eqXg2/yLAs4vYZ51EUrTP3gLYFly85YDx2oIB6Hd3OK yCEoULFyePmcy5cAVn6SPiLii10xwNfmAYvfdoaytaaG1/wPLU8Bb2q7fL4lSe+/ JMcxrCSbuMh6 =kL8F -----END PGP SIGNATURE----- Fri Sep 27 07:23:16 UTC 2024 I: Checking whether the package is not for us Fri Sep 27 07:23:16 UTC 2024 I: Starting 1st build on remote node codethink02-arm64.debian.net. Fri Sep 27 07:23:16 UTC 2024 I: Preparing to do remote build '1' on codethink02-arm64.debian.net. Fri Sep 27 07:23:16 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink02-arm64.debian.net is marked as down. Fri Sep 27 07:23:16 UTC 2024 - checking via ssh if codethink02-arm64.debian.net is up. removed '/tmp/read-only-fs-test-1J5Guv' ==================================================================================== Fri Sep 27 07:23:17 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink02-arm64, called using "1 ngmlr trixie /srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO 0.2.7+git20210816.a2a31fb+dfsg-2" as arguments. Fri Sep 27 07:23:17 UTC 2024 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-TmeIz5OX" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Sep 27 07:23:18 UTC 2024 I: Downloading source for trixie/ngmlr=0.2.7+git20210816.a2a31fb+dfsg-2 Reading package lists... NOTICE: 'ngmlr' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ngmlr.git Please use: git clone https://salsa.debian.org/med-team/ngmlr.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 678 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main ngmlr 0.2.7+git20210816.a2a31fb+dfsg-2 (dsc) [2209 B] Get:2 http://deb.debian.org/debian trixie/main ngmlr 0.2.7+git20210816.a2a31fb+dfsg-2 (tar) [668 kB] Get:3 http://deb.debian.org/debian trixie/main ngmlr 0.2.7+git20210816.a2a31fb+dfsg-2 (diff) [8084 B] Fetched 678 kB in 0s (8131 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'ngmlr' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ngmlr.git Please use: git clone https://salsa.debian.org/med-team/ngmlr.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 678 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main ngmlr 0.2.7+git20210816.a2a31fb+dfsg-2 (dsc) [2209 B] Get:2 http://deb.debian.org/debian trixie/main ngmlr 0.2.7+git20210816.a2a31fb+dfsg-2 (tar) [668 kB] Get:3 http://deb.debian.org/debian trixie/main ngmlr 0.2.7+git20210816.a2a31fb+dfsg-2 (diff) [8084 B] Fetched 678 kB in 0s (8131 kB/s) Download complete and in download only mode ============================================================================= Building ngmlr in trixie on arm64 on codethink02-arm64 now. Date: Fri Sep 27 08:23:18 BST 2024 Date UTC: Fri Sep 27 07:23:18 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Sep 26 19:23:18 -12 2024 I: pbuilder-time-stamp: 1727421798 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc] I: copying [./ngmlr_0.2.7+git20210816.a2a31fb+dfsg.orig.tar.gz] I: copying [./ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Oct 14 12:22:50 2021 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting ngmlr in ngmlr-0.2.7+git20210816.a2a31fb+dfsg dpkg-source: info: unpacking ngmlr_0.2.7+git20210816.a2a31fb+dfsg.orig.tar.gz dpkg-source: info: unpacking ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use-system-libs.patch dpkg-source: info: applying spellings.patch dpkg-source: info: applying simde.patch dpkg-source: info: applying VarArgsDefines.patch dpkg-source: info: applying AlignmentBuffer_noMatch.patch dpkg-source: info: applying fix-arm64.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1719223/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='7f98a742f14344238dc6a89ed6b2fea6' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1719223' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO/pbuilderrc_0gMy --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO/b1 --logfile b1/build.log ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1719223/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, zlib1g-dev, libssw-dev, libtclap-dev, libhts-dev, libsimde-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19895 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libssw-dev; however: Package libssw-dev is not installed. pbuilder-satisfydepends-dummy depends on libtclap-dev; however: Package libtclap-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli-dev{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgssapi-krb5-2{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-dev{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} librhash0{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libssw-dev{a} libssw0{a} libtasn1-6-dev{a} libtclap-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libuv1t64{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 93 newly installed, 0 to remove and 0 not upgraded. Need to get 53.3 MB of archives. After unpacking 211 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libproc2-0 arm64 2:4.0.4-5 [61.3 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 procps arm64 2:4.0.4-5 [868 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-8 [96.6 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libarchive13t64 arm64 3.7.4-1 [323 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b4 [292 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1 [22.8 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-3 [9112 B] Get: 26 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3 [174 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.63.0-1 [71.2 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.0-7 [208 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.10.1-1 [322 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.3-1 [90.2 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libjsoncpp25 arm64 1.9.5-6+b2 [73.2 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 librhash0 arm64 1.4.3-3+b1 [127 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libuv1t64 arm64 1.48.0-6 [142 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 cmake-data all 3.30.3-1 [2221 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 cmake arm64 3.30.3-1 [9398 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 48 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-2 [188 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libbrotli-dev arm64 1.1.0-2+b4 [308 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.4.0-1 [59.5 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.6.0-1 [112 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.6.0-1 [18.5 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.10.1-1 [329 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10 [169 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libunbound8 arm64 1.20.0-1+b1 [542 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libgnutls-dane0t64 arm64 3.8.6-2 [436 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libgnutls-openssl27t64 arm64 3.8.6-2 [436 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libidn2-dev arm64 2.3.7-2 [122 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libp11-kit-dev arm64 0.25.5-2 [208 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libtasn1-6-dev arm64 4.19.0-3+b2 [96.2 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-2+b1 [329 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-2+b1 [619 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 nettle-dev arm64 3.10-1 [1323 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libgnutls28-dev arm64 3.8.6-2 [1394 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-3 [35.3 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-3 [29.4 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-3 [26.0 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libnghttp2-dev arm64 1.63.0-1 [112 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libnghttp3-dev arm64 1.4.0-1 [85.3 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.6.0-1 [23.7 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libngtcp2-dev arm64 1.6.0-1 [165 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libpsl-dev arm64 0.21.2-1.1 [77.7 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b4 [67.3 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libssl-dev arm64 3.3.2-1 [3185 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libssh2-1-dev arm64 1.11.0-7 [353 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libzstd-dev arm64 1.5.6+dfsg-1 [330 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libcurl4-gnutls-dev arm64 8.10.1-1 [456 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.21-1 [42.2 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libdeflate-dev arm64 1.21-1 [51.2 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libhtscodecs2 arm64 1.6.1-1 [74.6 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libhts3t64 arm64 1.20+ds-1 [416 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 liblzma-dev arm64 5.6.2-2 [296 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 libhts-dev arm64 1.20+ds-1 [1613 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libsimde-dev all 0.8.2-1 [465 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libssw0 arm64 1.1-15 [19.4 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libssw-dev arm64 1.1-15 [22.7 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libtclap-dev arm64 1.2.5-1+b1 [3359 kB] Fetched 53.3 MB in 1s (52.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19895 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-5_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-5) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-5_arm64.deb ... Unpacking procps (2:4.0.4-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.2-8_arm64.deb ... Unpacking bsdextrautils (2.40.2-8) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../10-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../17-libicu72_72.1-5_arm64.deb ... Unpacking libicu72:arm64 (72.1-5) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../18-libxml2_2.9.14+dfsg-1.3+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package libarchive13t64:arm64. Preparing to unpack .../19-libarchive13t64_3.7.4-1_arm64.deb ... Unpacking libarchive13t64:arm64 (3.7.4-1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../20-libbrotli1_1.1.0-2+b4_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b4) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../21-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../22-libcom-err2_1.47.1-1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../23-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../24-libkeyutils1_1.6.3-3_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../25-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../26-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../27-libsasl2-modules-db_2.1.28+dfsg1-8_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../28-libsasl2-2_2.1.28+dfsg1-8_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:arm64. Preparing to unpack .../29-libldap-2.5-0_2.5.18+dfsg-3_arm64.deb ... Unpacking libldap-2.5-0:arm64 (2.5.18+dfsg-3) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../30-libnghttp2-14_1.63.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.63.0-1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../31-libpsl5t64_0.21.2-1.1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../32-librtmp1_2.4+20151223.gitfa8646d.1-2+b4_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b4) ... Selecting previously unselected package libssh2-1t64:arm64. Preparing to unpack .../33-libssh2-1t64_1.11.0-7_arm64.deb ... Unpacking libssh2-1t64:arm64 (1.11.0-7) ... Selecting previously unselected package libcurl4t64:arm64. Preparing to unpack .../34-libcurl4t64_8.10.1-1_arm64.deb ... Unpacking libcurl4t64:arm64 (8.10.1-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../35-libexpat1_2.6.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.3-1) ... Selecting previously unselected package libjsoncpp25:arm64. Preparing to unpack .../36-libjsoncpp25_1.9.5-6+b2_arm64.deb ... Unpacking libjsoncpp25:arm64 (1.9.5-6+b2) ... Selecting previously unselected package librhash0:arm64. Preparing to unpack .../37-librhash0_1.4.3-3+b1_arm64.deb ... Unpacking librhash0:arm64 (1.4.3-3+b1) ... Selecting previously unselected package libuv1t64:arm64. Preparing to unpack .../38-libuv1t64_1.48.0-6_arm64.deb ... Unpacking libuv1t64:arm64 (1.48.0-6) ... Selecting previously unselected package cmake-data. Preparing to unpack .../39-cmake-data_3.30.3-1_all.deb ... Unpacking cmake-data (3.30.3-1) ... Selecting previously unselected package cmake. Preparing to unpack .../40-cmake_3.30.3-1_arm64.deb ... Unpacking cmake (3.30.3-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../41-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../42-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../43-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../44-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../45-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../46-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../47-libelf1t64_0.191-2_arm64.deb ... Unpacking libelf1t64:arm64 (0.191-2) ... Selecting previously unselected package dwz. Preparing to unpack .../48-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../49-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../50-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../51-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../52-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package libbrotli-dev:arm64. Preparing to unpack .../53-libbrotli-dev_1.1.0-2+b4_arm64.deb ... Unpacking libbrotli-dev:arm64 (1.1.0-2+b4) ... Selecting previously unselected package libnghttp3-9:arm64. Preparing to unpack .../54-libnghttp3-9_1.4.0-1_arm64.deb ... Unpacking libnghttp3-9:arm64 (1.4.0-1) ... Selecting previously unselected package libngtcp2-16:arm64. Preparing to unpack .../55-libngtcp2-16_1.6.0-1_arm64.deb ... Unpacking libngtcp2-16:arm64 (1.6.0-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:arm64. Preparing to unpack .../56-libngtcp2-crypto-gnutls8_1.6.0-1_arm64.deb ... Unpacking libngtcp2-crypto-gnutls8:arm64 (1.6.0-1) ... Selecting previously unselected package libcurl3t64-gnutls:arm64. Preparing to unpack .../57-libcurl3t64-gnutls_8.10.1-1_arm64.deb ... Unpacking libcurl3t64-gnutls:arm64 (8.10.1-1) ... Selecting previously unselected package libevent-2.1-7t64:arm64. Preparing to unpack .../58-libevent-2.1-7t64_2.1.12-stable-10_arm64.deb ... Unpacking libevent-2.1-7t64:arm64 (2.1.12-stable-10) ... Selecting previously unselected package libunbound8:arm64. Preparing to unpack .../59-libunbound8_1.20.0-1+b1_arm64.deb ... Unpacking libunbound8:arm64 (1.20.0-1+b1) ... Selecting previously unselected package libgnutls-dane0t64:arm64. Preparing to unpack .../60-libgnutls-dane0t64_3.8.6-2_arm64.deb ... Unpacking libgnutls-dane0t64:arm64 (3.8.6-2) ... Selecting previously unselected package libgnutls-openssl27t64:arm64. Preparing to unpack .../61-libgnutls-openssl27t64_3.8.6-2_arm64.deb ... Unpacking libgnutls-openssl27t64:arm64 (3.8.6-2) ... Selecting previously unselected package libidn2-dev:arm64. Preparing to unpack .../62-libidn2-dev_2.3.7-2_arm64.deb ... Unpacking libidn2-dev:arm64 (2.3.7-2) ... Selecting previously unselected package libp11-kit-dev:arm64. Preparing to unpack .../63-libp11-kit-dev_0.25.5-2_arm64.deb ... Unpacking libp11-kit-dev:arm64 (0.25.5-2) ... Selecting previously unselected package libtasn1-6-dev:arm64. Preparing to unpack .../64-libtasn1-6-dev_4.19.0-3+b2_arm64.deb ... Unpacking libtasn1-6-dev:arm64 (4.19.0-3+b2) ... Selecting previously unselected package libgmpxx4ldbl:arm64. Preparing to unpack .../65-libgmpxx4ldbl_2%3a6.3.0+dfsg-2+b1_arm64.deb ... Unpacking libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-2+b1) ... Selecting previously unselected package libgmp-dev:arm64. Preparing to unpack .../66-libgmp-dev_2%3a6.3.0+dfsg-2+b1_arm64.deb ... Unpacking libgmp-dev:arm64 (2:6.3.0+dfsg-2+b1) ... Selecting previously unselected package nettle-dev:arm64. Preparing to unpack .../67-nettle-dev_3.10-1_arm64.deb ... Unpacking nettle-dev:arm64 (3.10-1) ... Selecting previously unselected package libgnutls28-dev:arm64. Preparing to unpack .../68-libgnutls28-dev_3.8.6-2_arm64.deb ... Unpacking libgnutls28-dev:arm64 (3.8.6-2) ... Selecting previously unselected package libpkgconf3:arm64. Preparing to unpack .../69-libpkgconf3_1.8.1-3_arm64.deb ... Unpacking libpkgconf3:arm64 (1.8.1-3) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../70-pkgconf-bin_1.8.1-3_arm64.deb ... Unpacking pkgconf-bin (1.8.1-3) ... Selecting previously unselected package pkgconf:arm64. Preparing to unpack .../71-pkgconf_1.8.1-3_arm64.deb ... Unpacking pkgconf:arm64 (1.8.1-3) ... Selecting previously unselected package libnghttp2-dev:arm64. Preparing to unpack .../72-libnghttp2-dev_1.63.0-1_arm64.deb ... Unpacking libnghttp2-dev:arm64 (1.63.0-1) ... Selecting previously unselected package libnghttp3-dev:arm64. Preparing to unpack .../73-libnghttp3-dev_1.4.0-1_arm64.deb ... Unpacking libnghttp3-dev:arm64 (1.4.0-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls-dev:arm64. Preparing to unpack .../74-libngtcp2-crypto-gnutls-dev_1.6.0-1_arm64.deb ... Unpacking libngtcp2-crypto-gnutls-dev:arm64 (1.6.0-1) ... Selecting previously unselected package libngtcp2-dev:arm64. Preparing to unpack .../75-libngtcp2-dev_1.6.0-1_arm64.deb ... Unpacking libngtcp2-dev:arm64 (1.6.0-1) ... Selecting previously unselected package libpsl-dev:arm64. Preparing to unpack .../76-libpsl-dev_0.21.2-1.1_arm64.deb ... Unpacking libpsl-dev:arm64 (0.21.2-1.1) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../77-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1) ... Selecting previously unselected package librtmp-dev:arm64. Preparing to unpack .../78-librtmp-dev_2.4+20151223.gitfa8646d.1-2+b4_arm64.deb ... 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Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_source.changes dpkg-buildpackage: info: source package ngmlr dpkg-buildpackage: info: source version 0.2.7+git20210816.a2a31fb+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg' dh_auto_clean rm -rf bin make[1]: Leaving directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg' dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake dh_auto_configure -O--buildsystem=cmake cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.3.1") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Performing Test COMPILER_SUPPORTS_CXX11 -- Performing Test COMPILER_SUPPORTS_CXX11 - Success CMake Deprecation Warning at src/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring done (3.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu dh_auto_build -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg -B/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu 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"--color=" make[3]: Leaving directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/ngmlr.dir/build.make src/CMakeFiles/ngmlr.dir/build make[3]: Leaving directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/recompile_always.dir/build.make src/CMakeFiles/recompile_always.dir/build make[3]: Entering directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && touch /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp make[3]: Leaving directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' [ 4%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o [ 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-I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o -MF CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o.d -o CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/AlignmentMatrixFast.cpp [ 16%] Building CXX object src/CMakeFiles/ngmlr.dir/CS.cpp.o [ 20%] Building CXX object src/CMakeFiles/ngmlr.dir/CSstatic.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ArgParser.cpp.o -MF CMakeFiles/ngmlr.dir/ArgParser.cpp.o.d -o CMakeFiles/ngmlr.dir/ArgParser.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ArgParser.cpp [ 16%] Built target recompile_always cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/CS.cpp.o -MF CMakeFiles/ngmlr.dir/CS.cpp.o.d -o CMakeFiles/ngmlr.dir/CS.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/CS.cpp cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/CSstatic.cpp.o -MF CMakeFiles/ngmlr.dir/CSstatic.cpp.o.d -o CMakeFiles/ngmlr.dir/CSstatic.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/CSstatic.cpp [ 24%] Building CXX object src/CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o [ 28%] Building CXX object src/CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o -MF CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o.d -o CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ConvexAlign.cpp cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o -MF CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o.d -o CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ConvexAlignFast.cpp [ 32%] Building CXX object src/CMakeFiles/ngmlr.dir/LinearRegression.cpp.o [ 36%] Building CXX object src/CMakeFiles/ngmlr.dir/Logging.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/LinearRegression.cpp.o -MF CMakeFiles/ngmlr.dir/LinearRegression.cpp.o.d -o CMakeFiles/ngmlr.dir/LinearRegression.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/LinearRegression.cpp cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/Logging.cpp.o -MF CMakeFiles/ngmlr.dir/Logging.cpp.o.d -o CMakeFiles/ngmlr.dir/Logging.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp [ 40%] Building CXX object src/CMakeFiles/ngmlr.dir/MappedRead.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/MappedRead.cpp.o -MF CMakeFiles/ngmlr.dir/MappedRead.cpp.o.d -o CMakeFiles/ngmlr.dir/MappedRead.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/MappedRead.cpp [ 44%] Building CXX object src/CMakeFiles/ngmlr.dir/main.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/main.cpp.o -MF CMakeFiles/ngmlr.dir/main.cpp.o.d -o CMakeFiles/ngmlr.dir/main.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp [ 48%] Building CXX object src/CMakeFiles/ngmlr.dir/NGM.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/NGM.cpp.o -MF CMakeFiles/ngmlr.dir/NGM.cpp.o.d -o CMakeFiles/ngmlr.dir/NGM.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/NGM.cpp /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp:56:153: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 56 | Log.Message("ngmlr %s%s (build: %s %s, start: %s)", version.str().c_str(), cDebug ? " debug" : "", __DATE__, __TIME__, currentDateTime().c_str()); | ^ /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp:56:108: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 56 | Log.Message("ngmlr %s%s (build: %s %s, start: %s)", version.str().c_str(), cDebug ? " debug" : "", __DATE__, __TIME__, currentDateTime().c_str()); | ^~~~~~~~ [ 52%] Building CXX object src/CMakeFiles/ngmlr.dir/NGMTask.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/NGMTask.cpp.o -MF CMakeFiles/ngmlr.dir/NGMTask.cpp.o.d -o CMakeFiles/ngmlr.dir/NGMTask.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/NGMTask.cpp [ 56%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o -MF CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o.d -o CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/AlignmentBuffer.cpp /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp: In function ‘std::string add_timestamp(std::string)’: /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp:118:41: warning: ‘%02i’ directive writing between 2 and 11 bytes into a region of size between 8 and 15 [-Wformat-overflow=] 118 | sprintf(timestamp, "%4i-%02i-%02i_%02i-%02i-%02i", tm->tm_year + 1900, tm->tm_mon + 1, tm->tm_mday, tm->tm_hour, tm->tm_min, | ^~~~ /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp:118:36: note: directive argument in the range [-2147483647, 2147483647] 118 | sprintf(timestamp, "%4i-%02i-%02i_%02i-%02i-%02i", tm->tm_year + 1900, tm->tm_mon + 1, tm->tm_mday, tm->tm_hour, tm->tm_min, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp:7: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘std::string add_timestamp(std::string)’ at /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp:118:10: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 20 and 72 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 60%] Building CXX object src/CMakeFiles/ngmlr.dir/PrefixTable.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/PrefixTable.cpp.o -MF CMakeFiles/ngmlr.dir/PrefixTable.cpp.o.d -o CMakeFiles/ngmlr.dir/PrefixTable.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/PrefixTable.cpp [ 64%] Building CXX object src/CMakeFiles/ngmlr.dir/ReadProvider.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ReadProvider.cpp.o -MF CMakeFiles/ngmlr.dir/ReadProvider.cpp.o.d -o CMakeFiles/ngmlr.dir/ReadProvider.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ReadProvider.cpp [ 68%] Building CXX object src/CMakeFiles/ngmlr.dir/SamParser.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/SamParser.cpp.o -MF CMakeFiles/ngmlr.dir/SamParser.cpp.o.d -o CMakeFiles/ngmlr.dir/SamParser.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SamParser.cpp [ 72%] Building CXX object src/CMakeFiles/ngmlr.dir/SAMWriter.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/SAMWriter.cpp.o -MF CMakeFiles/ngmlr.dir/SAMWriter.cpp.o.d -o CMakeFiles/ngmlr.dir/SAMWriter.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SAMWriter.cpp [ 76%] Building CXX object src/CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o -MF CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o.d -o CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SequenceProvider.cpp [ 80%] Building CXX object src/CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o -MF CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o.d -o CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp [ 84%] Building CXX object src/CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o -MF CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o.d -o CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ScoreBuffer.cpp [ 88%] Building CXX object src/CMakeFiles/ngmlr.dir/StrippedSW.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/StrippedSW.cpp.o -MF CMakeFiles/ngmlr.dir/StrippedSW.cpp.o.d -o CMakeFiles/ngmlr.dir/StrippedSW.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/StrippedSW.cpp /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp: In destructor ‘OutputReadBuffer::~OutputReadBuffer()’: /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp:17:17: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 17 | throw "Elements left in buffer!"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp:17:17: note: in C++11 destructors default to ‘noexcept’ [ 92%] Building CXX object src/CMakeFiles/ngmlr.dir/unix.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/unix.cpp.o -MF CMakeFiles/ngmlr.dir/unix.cpp.o.d -o CMakeFiles/ngmlr.dir/unix.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/unix.cpp [ 96%] Building CXX object src/CMakeFiles/ngmlr.dir/unix_threads.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/unix_threads.cpp.o -MF CMakeFiles/ngmlr.dir/unix_threads.cpp.o.d -o CMakeFiles/ngmlr.dir/unix_threads.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/unix_threads.cpp [100%] Linking CXX executable /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/bin/ngmlr-0.2.8/ngmlr cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngmlr.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o CMakeFiles/ngmlr.dir/ArgParser.cpp.o CMakeFiles/ngmlr.dir/CS.cpp.o CMakeFiles/ngmlr.dir/CSstatic.cpp.o CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o CMakeFiles/ngmlr.dir/LinearRegression.cpp.o CMakeFiles/ngmlr.dir/Logging.cpp.o CMakeFiles/ngmlr.dir/MappedRead.cpp.o CMakeFiles/ngmlr.dir/main.cpp.o CMakeFiles/ngmlr.dir/NGM.cpp.o CMakeFiles/ngmlr.dir/NGMTask.cpp.o CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o CMakeFiles/ngmlr.dir/PrefixTable.cpp.o CMakeFiles/ngmlr.dir/ReadProvider.cpp.o CMakeFiles/ngmlr.dir/SamParser.cpp.o CMakeFiles/ngmlr.dir/SAMWriter.cpp.o CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o CMakeFiles/ngmlr.dir/StrippedSW.cpp.o CMakeFiles/ngmlr.dir/unix.cpp.o CMakeFiles/ngmlr.dir/unix_threads.cpp.o -o /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/bin/ngmlr-0.2.8/ngmlr -lz -lssw make[3]: Leaving directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' [100%] Built target ngmlr make[2]: Leaving directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' dh_auto_test -O--buildsystem=cmake create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/ngmlr/ -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/ngmlr-0.2.7\+git20210816.a2a31fb\+dfsg/debian/ngmlr AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg -B/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/debian/ngmlr/usr/bin/ngmlr make[1]: Leaving directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'ngmlr' in '../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.deb'. dpkg-deb: building package 'ngmlr-dbgsym' in '../ngmlr-dbgsym_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.buildinfo dpkg-genchanges --build=binary -O../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1719223 and its subdirectories I: Current time: Thu Sep 26 19:24:59 -12 2024 I: pbuilder-time-stamp: 1727421899 Fri Sep 27 07:24:59 UTC 2024 I: Signing ./b1/ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.buildinfo as ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.buildinfo.asc Fri Sep 27 07:24:59 UTC 2024 I: Signed ./b1/ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.buildinfo as ./b1/ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.buildinfo.asc Fri Sep 27 07:24:59 UTC 2024 - build #1 for ngmlr/trixie/arm64 on codethink02-arm64 done. Starting cleanup. All cleanup done. Fri Sep 27 07:24:59 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-TmeIz5OX, removing. /srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Sep 27 07:25 b1 drwxr-xr-x 2 jenkins jenkins 4096 Sep 27 07:23 b2 -rw-r--r-- 1 jenkins jenkins 2209 Oct 14 2021 ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc -rw------- 1 jenkins jenkins 3429 Sep 27 07:23 rbuildlog.W0lXaKs /srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO/b1: total 1924 -rw-r--r-- 1 jenkins jenkins 72162 Sep 27 07:25 build.log -rw-r--r-- 1 jenkins jenkins 1184456 Sep 27 07:25 ngmlr-dbgsym_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 8084 Sep 27 07:25 ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2209 Sep 27 07:25 ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc -rw-r--r-- 1 jenkins jenkins 7204 Sep 27 07:25 ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 8086 Sep 27 07:25 ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1658 Sep 27 07:25 ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.changes -rw-r--r-- 1 jenkins jenkins 670380 Sep 27 07:25 ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 1523 Sep 27 07:25 ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO/b2: total 0 Fri Sep 27 07:25:00 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Sep 26 19:23:18 -12 2024 I: pbuilder-time-stamp: 1727421798 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc] I: copying [./ngmlr_0.2.7+git20210816.a2a31fb+dfsg.orig.tar.gz] I: copying [./ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Oct 14 12:22:50 2021 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting ngmlr in ngmlr-0.2.7+git20210816.a2a31fb+dfsg dpkg-source: info: unpacking ngmlr_0.2.7+git20210816.a2a31fb+dfsg.orig.tar.gz dpkg-source: info: unpacking ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use-system-libs.patch dpkg-source: info: applying spellings.patch dpkg-source: info: applying simde.patch dpkg-source: info: applying VarArgsDefines.patch dpkg-source: info: applying AlignmentBuffer_noMatch.patch dpkg-source: info: applying fix-arm64.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1719223/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='7f98a742f14344238dc6a89ed6b2fea6' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1719223' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO/pbuilderrc_0gMy --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO/b1 --logfile b1/build.log ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1719223/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, zlib1g-dev, libssw-dev, libtclap-dev, libhts-dev, libsimde-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19895 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libssw-dev; however: Package libssw-dev is not installed. pbuilder-satisfydepends-dummy depends on libtclap-dev; however: Package libtclap-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli-dev{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgssapi-krb5-2{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-dev{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} librhash0{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libssw-dev{a} libssw0{a} libtasn1-6-dev{a} libtclap-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libuv1t64{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 93 newly installed, 0 to remove and 0 not upgraded. Need to get 53.3 MB of archives. After unpacking 211 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libproc2-0 arm64 2:4.0.4-5 [61.3 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 procps arm64 2:4.0.4-5 [868 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-8 [96.6 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libarchive13t64 arm64 3.7.4-1 [323 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b4 [292 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1 [22.8 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-3 [9112 B] Get: 26 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3 [174 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.63.0-1 [71.2 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.0-7 [208 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.10.1-1 [322 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.3-1 [90.2 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libjsoncpp25 arm64 1.9.5-6+b2 [73.2 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 librhash0 arm64 1.4.3-3+b1 [127 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libuv1t64 arm64 1.48.0-6 [142 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 cmake-data all 3.30.3-1 [2221 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 cmake arm64 3.30.3-1 [9398 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 48 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-2 [188 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libbrotli-dev arm64 1.1.0-2+b4 [308 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.4.0-1 [59.5 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.6.0-1 [112 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.6.0-1 [18.5 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.10.1-1 [329 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10 [169 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libunbound8 arm64 1.20.0-1+b1 [542 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libgnutls-dane0t64 arm64 3.8.6-2 [436 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libgnutls-openssl27t64 arm64 3.8.6-2 [436 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libidn2-dev arm64 2.3.7-2 [122 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libp11-kit-dev arm64 0.25.5-2 [208 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libtasn1-6-dev arm64 4.19.0-3+b2 [96.2 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-2+b1 [329 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-2+b1 [619 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 nettle-dev arm64 3.10-1 [1323 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libgnutls28-dev arm64 3.8.6-2 [1394 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-3 [35.3 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-3 [29.4 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-3 [26.0 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libnghttp2-dev arm64 1.63.0-1 [112 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libnghttp3-dev arm64 1.4.0-1 [85.3 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.6.0-1 [23.7 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libngtcp2-dev arm64 1.6.0-1 [165 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libpsl-dev arm64 0.21.2-1.1 [77.7 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b4 [67.3 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libssl-dev arm64 3.3.2-1 [3185 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libssh2-1-dev arm64 1.11.0-7 [353 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libzstd-dev arm64 1.5.6+dfsg-1 [330 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libcurl4-gnutls-dev arm64 8.10.1-1 [456 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.21-1 [42.2 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libdeflate-dev arm64 1.21-1 [51.2 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libhtscodecs2 arm64 1.6.1-1 [74.6 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libhts3t64 arm64 1.20+ds-1 [416 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 liblzma-dev arm64 5.6.2-2 [296 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 libhts-dev arm64 1.20+ds-1 [1613 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libsimde-dev all 0.8.2-1 [465 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libssw0 arm64 1.1-15 [19.4 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libssw-dev arm64 1.1-15 [22.7 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libtclap-dev arm64 1.2.5-1+b1 [3359 kB] Fetched 53.3 MB in 1s (52.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19895 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-5_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-5) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-5_arm64.deb ... Unpacking procps (2:4.0.4-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.2-8_arm64.deb ... Unpacking bsdextrautils (2.40.2-8) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../10-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../17-libicu72_72.1-5_arm64.deb ... Unpacking libicu72:arm64 (72.1-5) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../18-libxml2_2.9.14+dfsg-1.3+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package libarchive13t64:arm64. Preparing to unpack .../19-libarchive13t64_3.7.4-1_arm64.deb ... Unpacking libarchive13t64:arm64 (3.7.4-1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../20-libbrotli1_1.1.0-2+b4_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b4) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../21-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../22-libcom-err2_1.47.1-1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../23-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../24-libkeyutils1_1.6.3-3_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../25-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../26-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../27-libsasl2-modules-db_2.1.28+dfsg1-8_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../28-libsasl2-2_2.1.28+dfsg1-8_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:arm64. Preparing to unpack .../29-libldap-2.5-0_2.5.18+dfsg-3_arm64.deb ... Unpacking libldap-2.5-0:arm64 (2.5.18+dfsg-3) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../30-libnghttp2-14_1.63.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.63.0-1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../31-libpsl5t64_0.21.2-1.1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../32-librtmp1_2.4+20151223.gitfa8646d.1-2+b4_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b4) ... Selecting previously unselected package libssh2-1t64:arm64. Preparing to unpack .../33-libssh2-1t64_1.11.0-7_arm64.deb ... Unpacking libssh2-1t64:arm64 (1.11.0-7) ... Selecting previously unselected package libcurl4t64:arm64. Preparing to unpack .../34-libcurl4t64_8.10.1-1_arm64.deb ... Unpacking libcurl4t64:arm64 (8.10.1-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../35-libexpat1_2.6.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.3-1) ... Selecting previously unselected package libjsoncpp25:arm64. Preparing to unpack .../36-libjsoncpp25_1.9.5-6+b2_arm64.deb ... Unpacking libjsoncpp25:arm64 (1.9.5-6+b2) ... Selecting previously unselected package librhash0:arm64. Preparing to unpack .../37-librhash0_1.4.3-3+b1_arm64.deb ... Unpacking librhash0:arm64 (1.4.3-3+b1) ... Selecting previously unselected package libuv1t64:arm64. Preparing to unpack .../38-libuv1t64_1.48.0-6_arm64.deb ... Unpacking libuv1t64:arm64 (1.48.0-6) ... Selecting previously unselected package cmake-data. Preparing to unpack .../39-cmake-data_3.30.3-1_all.deb ... Unpacking cmake-data (3.30.3-1) ... Selecting previously unselected package cmake. Preparing to unpack .../40-cmake_3.30.3-1_arm64.deb ... Unpacking cmake (3.30.3-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../41-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../42-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../43-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../44-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... 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Setting up libssh2-1-dev:arm64 (1.11.0-7) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libarchive13t64:arm64 (3.7.4-1) ... Setting up libgnutls28-dev:arm64 (3.8.6-2) ... Setting up libnghttp2-dev:arm64 (1.63.0-1) ... Setting up libcurl4t64:arm64 (8.10.1-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3t64-gnutls:arm64 (8.10.1-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up cmake (3.30.3-1) ... Setting up libhts3t64:arm64 (1.20+ds-1) ... Setting up debhelper (13.20) ... Setting up libcurl4-gnutls-dev:arm64 (8.10.1-1) ... Setting up libhts-dev:arm64 (1.20+ds-1) ... Processing triggers for libc-bin (2.40-2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_source.changes dpkg-buildpackage: info: source package ngmlr dpkg-buildpackage: info: source version 0.2.7+git20210816.a2a31fb+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg' dh_auto_clean rm -rf bin make[1]: Leaving directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg' dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake dh_auto_configure -O--buildsystem=cmake cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.3.1") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Performing Test COMPILER_SUPPORTS_CXX11 -- Performing Test COMPILER_SUPPORTS_CXX11 - Success CMake Deprecation Warning at src/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring done (3.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu dh_auto_build -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg -B/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/ngmlr.dir/build.make src/CMakeFiles/ngmlr.dir/depend make[3]: Entering directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/recompile_always.dir/build.make src/CMakeFiles/recompile_always.dir/depend cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/ngmlr.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/recompile_always.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/ngmlr.dir/build.make src/CMakeFiles/ngmlr.dir/build make[3]: Leaving directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/recompile_always.dir/build.make src/CMakeFiles/recompile_always.dir/build make[3]: Entering directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && touch /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp make[3]: Leaving directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' [ 4%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o [ 8%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o -MF CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o.d -o CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/AlignmentMatrix.cpp [ 12%] Building CXX object src/CMakeFiles/ngmlr.dir/ArgParser.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o -MF CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o.d -o CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/AlignmentMatrixFast.cpp [ 16%] Building CXX object src/CMakeFiles/ngmlr.dir/CS.cpp.o [ 20%] Building CXX object src/CMakeFiles/ngmlr.dir/CSstatic.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ArgParser.cpp.o -MF CMakeFiles/ngmlr.dir/ArgParser.cpp.o.d -o CMakeFiles/ngmlr.dir/ArgParser.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ArgParser.cpp [ 16%] Built target recompile_always cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/CS.cpp.o -MF CMakeFiles/ngmlr.dir/CS.cpp.o.d -o CMakeFiles/ngmlr.dir/CS.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/CS.cpp cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/CSstatic.cpp.o -MF CMakeFiles/ngmlr.dir/CSstatic.cpp.o.d -o CMakeFiles/ngmlr.dir/CSstatic.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/CSstatic.cpp [ 24%] Building CXX object src/CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o [ 28%] Building CXX object src/CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o -MF CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o.d -o CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ConvexAlign.cpp cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o -MF CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o.d -o CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ConvexAlignFast.cpp [ 32%] Building CXX object src/CMakeFiles/ngmlr.dir/LinearRegression.cpp.o [ 36%] Building CXX object src/CMakeFiles/ngmlr.dir/Logging.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/LinearRegression.cpp.o -MF CMakeFiles/ngmlr.dir/LinearRegression.cpp.o.d -o CMakeFiles/ngmlr.dir/LinearRegression.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/LinearRegression.cpp cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/Logging.cpp.o -MF CMakeFiles/ngmlr.dir/Logging.cpp.o.d -o CMakeFiles/ngmlr.dir/Logging.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp [ 40%] Building CXX object src/CMakeFiles/ngmlr.dir/MappedRead.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/MappedRead.cpp.o -MF CMakeFiles/ngmlr.dir/MappedRead.cpp.o.d -o CMakeFiles/ngmlr.dir/MappedRead.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/MappedRead.cpp [ 44%] Building CXX object src/CMakeFiles/ngmlr.dir/main.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/main.cpp.o -MF CMakeFiles/ngmlr.dir/main.cpp.o.d -o CMakeFiles/ngmlr.dir/main.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp [ 48%] Building CXX object src/CMakeFiles/ngmlr.dir/NGM.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/NGM.cpp.o -MF CMakeFiles/ngmlr.dir/NGM.cpp.o.d -o CMakeFiles/ngmlr.dir/NGM.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/NGM.cpp /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp:56:153: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 56 | Log.Message("ngmlr %s%s (build: %s %s, start: %s)", version.str().c_str(), cDebug ? " debug" : "", __DATE__, __TIME__, currentDateTime().c_str()); | ^ /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp:56:108: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 56 | Log.Message("ngmlr %s%s (build: %s %s, start: %s)", version.str().c_str(), cDebug ? " debug" : "", __DATE__, __TIME__, currentDateTime().c_str()); | ^~~~~~~~ [ 52%] Building CXX object src/CMakeFiles/ngmlr.dir/NGMTask.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/NGMTask.cpp.o -MF CMakeFiles/ngmlr.dir/NGMTask.cpp.o.d -o CMakeFiles/ngmlr.dir/NGMTask.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/NGMTask.cpp [ 56%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o -MF CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o.d -o CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/AlignmentBuffer.cpp /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp: In function ‘std::string add_timestamp(std::string)’: /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp:118:41: warning: ‘%02i’ directive writing between 2 and 11 bytes into a region of size between 8 and 15 [-Wformat-overflow=] 118 | sprintf(timestamp, "%4i-%02i-%02i_%02i-%02i-%02i", tm->tm_year + 1900, tm->tm_mon + 1, tm->tm_mday, tm->tm_hour, tm->tm_min, | ^~~~ /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp:118:36: note: directive argument in the range [-2147483647, 2147483647] 118 | sprintf(timestamp, "%4i-%02i-%02i_%02i-%02i-%02i", tm->tm_year + 1900, tm->tm_mon + 1, tm->tm_mday, tm->tm_hour, tm->tm_min, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp:7: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘std::string add_timestamp(std::string)’ at /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp:118:10: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 20 and 72 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 60%] Building CXX object src/CMakeFiles/ngmlr.dir/PrefixTable.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/PrefixTable.cpp.o -MF CMakeFiles/ngmlr.dir/PrefixTable.cpp.o.d -o CMakeFiles/ngmlr.dir/PrefixTable.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/PrefixTable.cpp [ 64%] Building CXX object src/CMakeFiles/ngmlr.dir/ReadProvider.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ReadProvider.cpp.o -MF CMakeFiles/ngmlr.dir/ReadProvider.cpp.o.d -o CMakeFiles/ngmlr.dir/ReadProvider.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ReadProvider.cpp [ 68%] Building CXX object src/CMakeFiles/ngmlr.dir/SamParser.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/SamParser.cpp.o -MF CMakeFiles/ngmlr.dir/SamParser.cpp.o.d -o CMakeFiles/ngmlr.dir/SamParser.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SamParser.cpp [ 72%] Building CXX object src/CMakeFiles/ngmlr.dir/SAMWriter.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/SAMWriter.cpp.o -MF CMakeFiles/ngmlr.dir/SAMWriter.cpp.o.d -o CMakeFiles/ngmlr.dir/SAMWriter.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SAMWriter.cpp [ 76%] Building CXX object src/CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o -MF CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o.d -o CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SequenceProvider.cpp [ 80%] Building CXX object src/CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o -MF CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o.d -o CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp [ 84%] Building CXX object src/CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o -MF CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o.d -o CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ScoreBuffer.cpp [ 88%] Building CXX object src/CMakeFiles/ngmlr.dir/StrippedSW.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/StrippedSW.cpp.o -MF CMakeFiles/ngmlr.dir/StrippedSW.cpp.o.d -o CMakeFiles/ngmlr.dir/StrippedSW.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/StrippedSW.cpp /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp: In destructor ‘OutputReadBuffer::~OutputReadBuffer()’: /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp:17:17: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 17 | throw "Elements left in buffer!"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp:17:17: note: in C++11 destructors default to ‘noexcept’ [ 92%] Building CXX object src/CMakeFiles/ngmlr.dir/unix.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/unix.cpp.o -MF CMakeFiles/ngmlr.dir/unix.cpp.o.d -o CMakeFiles/ngmlr.dir/unix.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/unix.cpp [ 96%] Building CXX object src/CMakeFiles/ngmlr.dir/unix_threads.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/unix_threads.cpp.o -MF CMakeFiles/ngmlr.dir/unix_threads.cpp.o.d -o CMakeFiles/ngmlr.dir/unix_threads.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/unix_threads.cpp [100%] Linking CXX executable /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/bin/ngmlr-0.2.8/ngmlr cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngmlr.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o CMakeFiles/ngmlr.dir/ArgParser.cpp.o CMakeFiles/ngmlr.dir/CS.cpp.o CMakeFiles/ngmlr.dir/CSstatic.cpp.o CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o CMakeFiles/ngmlr.dir/LinearRegression.cpp.o CMakeFiles/ngmlr.dir/Logging.cpp.o CMakeFiles/ngmlr.dir/MappedRead.cpp.o CMakeFiles/ngmlr.dir/main.cpp.o CMakeFiles/ngmlr.dir/NGM.cpp.o CMakeFiles/ngmlr.dir/NGMTask.cpp.o CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o CMakeFiles/ngmlr.dir/PrefixTable.cpp.o CMakeFiles/ngmlr.dir/ReadProvider.cpp.o CMakeFiles/ngmlr.dir/SamParser.cpp.o CMakeFiles/ngmlr.dir/SAMWriter.cpp.o CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o CMakeFiles/ngmlr.dir/StrippedSW.cpp.o CMakeFiles/ngmlr.dir/unix.cpp.o CMakeFiles/ngmlr.dir/unix_threads.cpp.o -o /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/bin/ngmlr-0.2.8/ngmlr -lz -lssw make[3]: Leaving directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' [100%] Built target ngmlr make[2]: Leaving directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' dh_auto_test -O--buildsystem=cmake create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/ngmlr/ -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/ngmlr-0.2.7\+git20210816.a2a31fb\+dfsg/debian/ngmlr AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg -B/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/debian/ngmlr/usr/bin/ngmlr make[1]: Leaving directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'ngmlr' in '../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.deb'. dpkg-deb: building package 'ngmlr-dbgsym' in '../ngmlr-dbgsym_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.buildinfo dpkg-genchanges --build=binary -O../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1719223 and its subdirectories I: Current time: Thu Sep 26 19:24:59 -12 2024 I: pbuilder-time-stamp: 1727421899 Fri Sep 27 07:25:01 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink01-arm64.debian.net. Fri Sep 27 07:25:01 UTC 2024 I: Preparing to do remote build '2' on codethink01-arm64.debian.net. Fri Sep 27 07:25:01 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink01-arm64.debian.net is marked as down. Fri Sep 27 07:25:01 UTC 2024 - checking via ssh if codethink01-arm64.debian.net is up. removed '/tmp/read-only-fs-test-8jAgIj' ==================================================================================== Thu Oct 30 13:48:01 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink01-arm64, called using "2 ngmlr trixie /srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO 0.2.7+git20210816.a2a31fb+dfsg-2" as arguments. Thu Oct 30 13:48:01 UTC 2025 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-8nzBdqgK" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Oct 30 13:48:01 UTC 2025 I: Downloading source for trixie/ngmlr=0.2.7+git20210816.a2a31fb+dfsg-2 Reading package lists... NOTICE: 'ngmlr' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ngmlr.git Please use: git clone https://salsa.debian.org/med-team/ngmlr.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 678 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main ngmlr 0.2.7+git20210816.a2a31fb+dfsg-2 (dsc) [2209 B] Get:2 http://deb.debian.org/debian trixie/main ngmlr 0.2.7+git20210816.a2a31fb+dfsg-2 (tar) [668 kB] Get:3 http://deb.debian.org/debian trixie/main ngmlr 0.2.7+git20210816.a2a31fb+dfsg-2 (diff) [8084 B] Fetched 678 kB in 0s (17.9 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'ngmlr' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ngmlr.git Please use: git clone https://salsa.debian.org/med-team/ngmlr.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 678 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main ngmlr 0.2.7+git20210816.a2a31fb+dfsg-2 (dsc) [2209 B] Get:2 http://deb.debian.org/debian trixie/main ngmlr 0.2.7+git20210816.a2a31fb+dfsg-2 (tar) [668 kB] Get:3 http://deb.debian.org/debian trixie/main ngmlr 0.2.7+git20210816.a2a31fb+dfsg-2 (diff) [8084 B] Fetched 678 kB in 0s (17.9 MB/s) Download complete and in download only mode ============================================================================= Re-Building ngmlr in trixie on arm64 on codethink01-arm64 now. Date: Thu Oct 30 13:48:01 GMT 2025 Date UTC: Thu Oct 30 13:48:01 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO/pbuilderrc_p2ZC + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' ngmlr = debian-installer -o ngmlr = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' ngmlr = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO/pbuilderrc_p2ZC --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO/b2 --logfile b2/build.log ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Oct 31 03:48:02 +14 2025 I: pbuilder-time-stamp: 1761832082 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc] I: copying [./ngmlr_0.2.7+git20210816.a2a31fb+dfsg.orig.tar.gz] I: copying [./ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Oct 14 12:22:50 2021 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting ngmlr in ngmlr-0.2.7+git20210816.a2a31fb+dfsg dpkg-source: info: unpacking ngmlr_0.2.7+git20210816.a2a31fb+dfsg.orig.tar.gz dpkg-source: info: unpacking ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use-system-libs.patch dpkg-source: info: applying spellings.patch dpkg-source: info: applying simde.patch dpkg-source: info: applying VarArgsDefines.patch dpkg-source: info: applying AlignmentBuffer_noMatch.patch dpkg-source: info: applying fix-arm64.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/452717/tmp/hooks/D01_modify_environment starting debug: Running on codethink01-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 30 13:48 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/452717/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/452717/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=1c7ebb11684846468c6cf1203eb82aaa LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=452717 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO/pbuilderrc_p2ZC --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO/b2 --logfile b2/build.log ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/452717/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, zlib1g-dev, libssw-dev, libtclap-dev, libhts-dev, libsimde-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19895 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libssw-dev; however: Package libssw-dev is not installed. pbuilder-satisfydepends-dummy depends on libtclap-dev; however: Package libtclap-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli-dev{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgssapi-krb5-2{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-dev{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} librhash0{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libssw-dev{a} libssw0{a} libtasn1-6-dev{a} libtclap-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libuv1t64{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 93 newly installed, 0 to remove and 0 not upgraded. Need to get 53.3 MB of archives. After unpacking 211 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libproc2-0 arm64 2:4.0.4-5 [61.3 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 procps arm64 2:4.0.4-5 [868 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-8 [96.6 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libarchive13t64 arm64 3.7.4-1 [323 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b4 [292 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1 [22.8 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-3 [9112 B] Get: 26 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3 [174 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.63.0-1 [71.2 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.0-7 [208 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.10.1-1 [322 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.3-1 [90.2 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libjsoncpp25 arm64 1.9.5-6+b2 [73.2 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 librhash0 arm64 1.4.3-3+b1 [127 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libuv1t64 arm64 1.48.0-6 [142 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 cmake-data all 3.30.3-1 [2221 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 cmake arm64 3.30.3-1 [9398 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 48 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-2 [188 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libbrotli-dev arm64 1.1.0-2+b4 [308 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.4.0-1 [59.5 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.6.0-1 [112 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.6.0-1 [18.5 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.10.1-1 [329 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10 [169 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libunbound8 arm64 1.20.0-1+b1 [542 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libgnutls-dane0t64 arm64 3.8.6-2 [436 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libgnutls-openssl27t64 arm64 3.8.6-2 [436 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libidn2-dev arm64 2.3.7-2 [122 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libp11-kit-dev arm64 0.25.5-2 [208 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libtasn1-6-dev arm64 4.19.0-3+b2 [96.2 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-2+b1 [329 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-2+b1 [619 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 nettle-dev arm64 3.10-1 [1323 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libgnutls28-dev arm64 3.8.6-2 [1394 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-3 [35.3 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-3 [29.4 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-3 [26.0 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libnghttp2-dev arm64 1.63.0-1 [112 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libnghttp3-dev arm64 1.4.0-1 [85.3 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.6.0-1 [23.7 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libngtcp2-dev arm64 1.6.0-1 [165 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libpsl-dev arm64 0.21.2-1.1 [77.7 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b4 [67.3 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libssl-dev arm64 3.3.2-1 [3185 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libssh2-1-dev arm64 1.11.0-7 [353 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libzstd-dev arm64 1.5.6+dfsg-1 [330 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libcurl4-gnutls-dev arm64 8.10.1-1 [456 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.21-1 [42.2 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libdeflate-dev arm64 1.21-1 [51.2 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libhtscodecs2 arm64 1.6.1-1 [74.6 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libhts3t64 arm64 1.20+ds-1 [416 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 liblzma-dev arm64 5.6.2-2 [296 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 libhts-dev arm64 1.20+ds-1 [1613 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libsimde-dev all 0.8.2-1 [465 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libssw0 arm64 1.1-15 [19.4 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libssw-dev arm64 1.1-15 [22.7 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libtclap-dev arm64 1.2.5-1+b1 [3359 kB] Fetched 53.3 MB in 1s (106 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19895 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-5_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-5) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-5_arm64.deb ... Unpacking procps (2:4.0.4-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... 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Setting up libuv1t64:arm64 (1.48.0-6) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up libpsl5t64:arm64 (0.21.2-1.1) ... Setting up libnghttp2-14:arm64 (1.63.0-1) ... Setting up libdeflate0:arm64 (1.21-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libevent-2.1-7t64:arm64 (2.1.12-stable-10) ... Setting up libcom-err2:arm64 (1.47.1-1) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:arm64 (0.191-2) ... Setting up libpsl-dev:arm64 (0.21.2-1.1) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Setting up autotools-dev (20220109.1) ... Setting up libunbound8:arm64 (1.20.0-1+b1) ... Setting up libpkgconf3:arm64 (1.8.1-3) ... Setting up libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-2+b1) ... Setting up libgnutls-dane0t64:arm64 (3.8.6-2) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libproc2-0:arm64 (2:4.0.4-5) ... Setting up libssl-dev:arm64 (3.3.2-1) ... Setting up autopoint (0.22.5-2) ... Setting up libjsoncpp25:arm64 (1.9.5-6+b2) ... Setting up pkgconf-bin (1.8.1-3) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up libidn2-dev:arm64 (2.3.7-2) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up libtclap-dev (1.2.5-1+b1) ... Setting up libnghttp3-9:arm64 (1.4.0-1) ... Setting up libnghttp3-dev:arm64 (1.4.0-1) ... Setting up liblzma-dev:arm64 (5.6.2-2) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up librhash0:arm64 (1.4.3-3+b1) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up procps (2:4.0.4-5) ... Setting up libngtcp2-16:arm64 (1.6.0-1) ... Setting up cmake-data (3.30.3-1) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libssh2-1t64:arm64 (1.11.0-7) ... Setting up libtasn1-6-dev:arm64 (4.19.0-3+b2) ... Setting up libdeflate-dev:arm64 (1.21-1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/452717/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/452717/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_source.changes dpkg-buildpackage: info: source package ngmlr dpkg-buildpackage: info: source version 0.2.7+git20210816.a2a31fb+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg' dh_auto_clean rm -rf bin make[1]: Leaving directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg' dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake dh_auto_configure -O--buildsystem=cmake cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. 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CMakeFiles/ngmlr.dir/Logging.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp [ 40%] Building CXX object src/CMakeFiles/ngmlr.dir/MappedRead.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/MappedRead.cpp.o -MF CMakeFiles/ngmlr.dir/MappedRead.cpp.o.d -o CMakeFiles/ngmlr.dir/MappedRead.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/MappedRead.cpp [ 44%] Building CXX object src/CMakeFiles/ngmlr.dir/main.cpp.o [ 48%] Building CXX object src/CMakeFiles/ngmlr.dir/NGM.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/main.cpp.o -MF CMakeFiles/ngmlr.dir/main.cpp.o.d -o CMakeFiles/ngmlr.dir/main.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/NGM.cpp.o -MF CMakeFiles/ngmlr.dir/NGM.cpp.o.d -o CMakeFiles/ngmlr.dir/NGM.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/NGM.cpp /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp:56:153: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 56 | Log.Message("ngmlr %s%s (build: %s %s, start: %s)", version.str().c_str(), cDebug ? " debug" : "", __DATE__, __TIME__, currentDateTime().c_str()); | ^ /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp:56:108: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 56 | Log.Message("ngmlr %s%s (build: %s %s, start: %s)", version.str().c_str(), cDebug ? " debug" : "", __DATE__, __TIME__, currentDateTime().c_str()); | ^~~~~~~~ /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp: In function ‘std::string add_timestamp(std::string)’: /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp:118:41: warning: ‘%02i’ directive writing between 2 and 11 bytes into a region of size between 8 and 15 [-Wformat-overflow=] 118 | sprintf(timestamp, "%4i-%02i-%02i_%02i-%02i-%02i", tm->tm_year + 1900, tm->tm_mon + 1, tm->tm_mday, tm->tm_hour, tm->tm_min, | ^~~~ /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp:118:36: note: directive argument in the range [-2147483647, 2147483647] 118 | sprintf(timestamp, "%4i-%02i-%02i_%02i-%02i-%02i", tm->tm_year + 1900, tm->tm_mon + 1, tm->tm_mday, tm->tm_hour, tm->tm_min, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp:7: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘std::string add_timestamp(std::string)’ at /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp:118:10: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 20 and 72 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object src/CMakeFiles/ngmlr.dir/NGMTask.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/NGMTask.cpp.o -MF CMakeFiles/ngmlr.dir/NGMTask.cpp.o.d -o CMakeFiles/ngmlr.dir/NGMTask.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/NGMTask.cpp [ 56%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o -MF CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o.d -o CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/AlignmentBuffer.cpp [ 60%] Building CXX object src/CMakeFiles/ngmlr.dir/PrefixTable.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/PrefixTable.cpp.o -MF CMakeFiles/ngmlr.dir/PrefixTable.cpp.o.d -o CMakeFiles/ngmlr.dir/PrefixTable.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/PrefixTable.cpp [ 64%] Building CXX object src/CMakeFiles/ngmlr.dir/ReadProvider.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ReadProvider.cpp.o -MF CMakeFiles/ngmlr.dir/ReadProvider.cpp.o.d -o CMakeFiles/ngmlr.dir/ReadProvider.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ReadProvider.cpp [ 68%] Building CXX object src/CMakeFiles/ngmlr.dir/SAMWriter.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/SAMWriter.cpp.o -MF CMakeFiles/ngmlr.dir/SAMWriter.cpp.o.d -o CMakeFiles/ngmlr.dir/SAMWriter.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SAMWriter.cpp [ 72%] Building CXX object src/CMakeFiles/ngmlr.dir/SamParser.cpp.o [ 76%] Building CXX object src/CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/SamParser.cpp.o -MF CMakeFiles/ngmlr.dir/SamParser.cpp.o.d -o CMakeFiles/ngmlr.dir/SamParser.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SamParser.cpp cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o -MF CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o.d -o CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SequenceProvider.cpp [ 80%] Building CXX object src/CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o -MF CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o.d -o CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp [ 84%] Building CXX object src/CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o -MF CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o.d -o CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ScoreBuffer.cpp /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp: In destructor ‘OutputReadBuffer::~OutputReadBuffer()’: /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp:17:17: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 17 | throw "Elements left in buffer!"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp:17:17: note: in C++11 destructors default to ‘noexcept’ [ 88%] Building CXX object src/CMakeFiles/ngmlr.dir/StrippedSW.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/StrippedSW.cpp.o -MF CMakeFiles/ngmlr.dir/StrippedSW.cpp.o.d -o CMakeFiles/ngmlr.dir/StrippedSW.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/StrippedSW.cpp [ 92%] Building CXX object src/CMakeFiles/ngmlr.dir/unix.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/unix.cpp.o -MF CMakeFiles/ngmlr.dir/unix.cpp.o.d -o CMakeFiles/ngmlr.dir/unix.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/unix.cpp [ 96%] Building CXX object src/CMakeFiles/ngmlr.dir/unix_threads.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/unix_threads.cpp.o -MF CMakeFiles/ngmlr.dir/unix_threads.cpp.o.d -o CMakeFiles/ngmlr.dir/unix_threads.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/unix_threads.cpp [100%] Linking CXX executable /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/bin/ngmlr-0.2.8/ngmlr cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngmlr.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o CMakeFiles/ngmlr.dir/ArgParser.cpp.o CMakeFiles/ngmlr.dir/CS.cpp.o CMakeFiles/ngmlr.dir/CSstatic.cpp.o CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o CMakeFiles/ngmlr.dir/LinearRegression.cpp.o CMakeFiles/ngmlr.dir/Logging.cpp.o CMakeFiles/ngmlr.dir/MappedRead.cpp.o CMakeFiles/ngmlr.dir/main.cpp.o CMakeFiles/ngmlr.dir/NGM.cpp.o CMakeFiles/ngmlr.dir/NGMTask.cpp.o CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o CMakeFiles/ngmlr.dir/PrefixTable.cpp.o CMakeFiles/ngmlr.dir/ReadProvider.cpp.o CMakeFiles/ngmlr.dir/SamParser.cpp.o CMakeFiles/ngmlr.dir/SAMWriter.cpp.o CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o CMakeFiles/ngmlr.dir/StrippedSW.cpp.o CMakeFiles/ngmlr.dir/unix.cpp.o CMakeFiles/ngmlr.dir/unix_threads.cpp.o -o /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/bin/ngmlr-0.2.8/ngmlr -lz -lssw make[3]: Leaving directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' [100%] Built target ngmlr make[2]: Leaving directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' dh_auto_test -O--buildsystem=cmake create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/ngmlr/ -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/ngmlr-0.2.7\+git20210816.a2a31fb\+dfsg/debian/ngmlr AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg -B/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/debian/ngmlr/usr/bin/ngmlr make[1]: Leaving directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'ngmlr-dbgsym' in '../ngmlr-dbgsym_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.deb'. dpkg-deb: building package 'ngmlr' in '../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.buildinfo dpkg-genchanges --build=binary -O../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/452717/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/452717/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/452717 and its subdirectories I: Current time: Fri Oct 31 03:49:14 +14 2025 I: pbuilder-time-stamp: 1761832154 + false + set +x Thu Oct 30 13:49:14 UTC 2025 I: Signing ./b2/ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.buildinfo as ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.buildinfo.asc Thu Oct 30 13:49:14 UTC 2025 I: Signed ./b2/ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.buildinfo as ./b2/ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.buildinfo.asc Thu Oct 30 13:49:14 UTC 2025 - build #2 for ngmlr/trixie/arm64 on codethink01-arm64 done. Starting cleanup. All cleanup done. Thu Oct 30 13:49:14 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-8nzBdqgK, removing. /srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO: total 92 drwxr-xr-x 2 jenkins jenkins 4096 Sep 27 07:25 b1 drwxr-xr-x 2 jenkins jenkins 4096 Sep 27 07:26 b2 -rw-r--r-- 1 jenkins jenkins 2209 Oct 14 2021 ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc -rw------- 1 jenkins jenkins 75892 Sep 27 07:25 rbuildlog.W0lXaKs /srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO/b1: total 1936 -rw-r--r-- 1 jenkins jenkins 72162 Sep 27 07:25 build.log -rw-r--r-- 1 jenkins jenkins 1184456 Sep 27 07:25 ngmlr-dbgsym_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 8084 Sep 27 07:25 ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2209 Sep 27 07:25 ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc -rw-r--r-- 1 jenkins jenkins 7204 Sep 27 07:25 ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 8086 Sep 27 07:25 ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1658 Sep 27 07:25 ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.changes -rw-r--r-- 1 jenkins jenkins 670380 Sep 27 07:25 ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 1523 Sep 27 07:25 ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO/b2: total 1928 -rw-r--r-- 1 jenkins jenkins 74094 Sep 27 07:26 build.log -rw-r--r-- 1 jenkins jenkins 1184456 Sep 27 07:26 ngmlr-dbgsym_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 8084 Sep 27 07:26 ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2209 Sep 27 07:26 ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc -rw-r--r-- 1 jenkins jenkins 7204 Sep 27 07:26 ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 8086 Sep 27 07:26 ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1658 Sep 27 07:26 ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.changes -rw-r--r-- 1 jenkins jenkins 670380 Sep 27 07:26 ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 1523 Sep 27 07:26 ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_source.changes Fri Sep 27 07:26:16 UTC 2024 I: Deleting $TMPDIR on codethink01-arm64.debian.net. Fri Sep 27 07:26:17 UTC 2024 I: ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.changes: Format: 1.8 Date: Thu, 14 Oct 2021 17:34:16 +0530 Source: ngmlr Binary: ngmlr ngmlr-dbgsym Architecture: arm64 Version: 0.2.7+git20210816.a2a31fb+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: ngmlr - CoNvex Gap-cost alignMents for Long Reads Changes: ngmlr (0.2.7+git20210816.a2a31fb+dfsg-2) unstable; urgency=medium . * Add patch to fix arm build * d/control: Remove Pranav from uploaders (not active) * d/t/run-unit-test: diff with -u flag Checksums-Sha1: 924c7cd8913d9da9218ff8ec61d6791e0fdcc853 1184456 ngmlr-dbgsym_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.deb d1e786757017b1a96914b1f5ad9e1c8ac7188d2e 7204 ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.buildinfo 9cf425bad01d7dff84b078c7b4c93267b4a20345 670380 ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.deb Checksums-Sha256: 536dc6955d0fedef3317829c34181fc919f05ab5f581f5a3284261a306bbcc04 1184456 ngmlr-dbgsym_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.deb 534588e4ad41e75feb8c56e9ad38ca3a674c3ef79696f88feab17feccadd0d6e 7204 ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.buildinfo a967fc8ef4a866ed5a67e409c88bfd12ebcae454e7195b6d18556de66e1bdbf1 670380 ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.deb Files: 76257d5741c368a5d4c1f773fdb9ecff 1184456 debug optional ngmlr-dbgsym_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.deb 023d6593040c499fb3bc84b13b427b38 7204 science optional ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.buildinfo 044f83c9483b7e9f65f96eaa79f3e4b2 670380 science optional ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/arm64/ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-09-27 07:25:00.166007909 +0000 +++ b2/build.log 2024-09-27 07:26:16.650756657 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Sep 26 19:23:18 -12 2024 -I: pbuilder-time-stamp: 1727421798 +I: Current time: Fri Oct 31 03:48:02 +14 2025 +I: pbuilder-time-stamp: 1761832082 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -33,52 +33,84 @@ dpkg-source: info: applying fix-arm64.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1719223/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/452717/tmp/hooks/D01_modify_environment starting +debug: Running on codethink01-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 30 13:48 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/452717/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/452717/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='7f98a742f14344238dc6a89ed6b2fea6' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1719223' - PS1='# ' - PS2='> ' + INVOCATION_ID=1c7ebb11684846468c6cf1203eb82aaa + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=452717 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO/pbuilderrc_0gMy --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO/b1 --logfile b1/build.log ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO/pbuilderrc_p2ZC --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO/b2 --logfile b2/build.log ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink02-arm64 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1719223/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/452717/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -219,7 +251,7 @@ Get: 91 http://deb.debian.org/debian trixie/main arm64 libssw0 arm64 1.1-15 [19.4 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libssw-dev arm64 1.1-15 [22.7 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libtclap-dev arm64 1.2.5-1+b1 [3359 kB] -Fetched 53.3 MB in 1s (52.3 MB/s) +Fetched 53.3 MB in 1s (106 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19895 files and directories currently installed.) @@ -606,7 +638,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/452717/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/452717/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_source.changes dpkg-buildpackage: info: source package ngmlr dpkg-buildpackage: info: source version 0.2.7+git20210816.a2a31fb+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -662,7 +698,7 @@ CMake that the project does not need compatibility with older versions. --- Configuring done (3.6s) +-- Configuring done (2.9s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -685,8 +721,8 @@ make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/ngmlr.dir/build.make src/CMakeFiles/ngmlr.dir/depend -make[3]: Entering directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/recompile_always.dir/build.make src/CMakeFiles/recompile_always.dir/depend +make[3]: Entering directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/ngmlr.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/recompile_always.dir/DependInfo.cmake "--color=" @@ -699,29 +735,29 @@ cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && touch /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp make[3]: Leaving directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu' [ 4%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o +[ 4%] Built target recompile_always [ 8%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o -MF CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o.d -o CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/AlignmentMatrix.cpp -[ 12%] Building CXX object src/CMakeFiles/ngmlr.dir/ArgParser.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o -MF CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o.d -o CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/AlignmentMatrixFast.cpp -[ 16%] Building CXX object src/CMakeFiles/ngmlr.dir/CS.cpp.o -[ 20%] Building CXX object src/CMakeFiles/ngmlr.dir/CSstatic.cpp.o +[ 12%] Building CXX object src/CMakeFiles/ngmlr.dir/ArgParser.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ArgParser.cpp.o -MF CMakeFiles/ngmlr.dir/ArgParser.cpp.o.d -o CMakeFiles/ngmlr.dir/ArgParser.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ArgParser.cpp -[ 16%] Built target recompile_always +[ 16%] Building CXX object src/CMakeFiles/ngmlr.dir/CS.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/CS.cpp.o -MF CMakeFiles/ngmlr.dir/CS.cpp.o.d -o CMakeFiles/ngmlr.dir/CS.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/CS.cpp +[ 20%] Building CXX object src/CMakeFiles/ngmlr.dir/CSstatic.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/CSstatic.cpp.o -MF CMakeFiles/ngmlr.dir/CSstatic.cpp.o.d -o CMakeFiles/ngmlr.dir/CSstatic.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/CSstatic.cpp [ 24%] Building CXX object src/CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o -[ 28%] Building CXX object src/CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o -MF CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o.d -o CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ConvexAlign.cpp -cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o -MF CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o.d -o CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ConvexAlignFast.cpp +[ 28%] Building CXX object src/CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o [ 32%] Building CXX object src/CMakeFiles/ngmlr.dir/LinearRegression.cpp.o -[ 36%] Building CXX object src/CMakeFiles/ngmlr.dir/Logging.cpp.o +cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o -MF CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o.d -o CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ConvexAlignFast.cpp cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/LinearRegression.cpp.o -MF CMakeFiles/ngmlr.dir/LinearRegression.cpp.o.d -o CMakeFiles/ngmlr.dir/LinearRegression.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/LinearRegression.cpp +[ 36%] Building CXX object src/CMakeFiles/ngmlr.dir/Logging.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/Logging.cpp.o -MF CMakeFiles/ngmlr.dir/Logging.cpp.o.d -o CMakeFiles/ngmlr.dir/Logging.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp [ 40%] Building CXX object src/CMakeFiles/ngmlr.dir/MappedRead.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/MappedRead.cpp.o -MF CMakeFiles/ngmlr.dir/MappedRead.cpp.o.d -o CMakeFiles/ngmlr.dir/MappedRead.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/MappedRead.cpp [ 44%] Building CXX object src/CMakeFiles/ngmlr.dir/main.cpp.o -cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/main.cpp.o -MF CMakeFiles/ngmlr.dir/main.cpp.o.d -o CMakeFiles/ngmlr.dir/main.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp [ 48%] Building CXX object src/CMakeFiles/ngmlr.dir/NGM.cpp.o +cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/main.cpp.o -MF CMakeFiles/ngmlr.dir/main.cpp.o.d -o CMakeFiles/ngmlr.dir/main.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/NGM.cpp.o -MF CMakeFiles/ngmlr.dir/NGM.cpp.o.d -o CMakeFiles/ngmlr.dir/NGM.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/NGM.cpp /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp:56:153: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 56 | Log.Message("ngmlr %s%s (build: %s %s, start: %s)", version.str().c_str(), cDebug ? " debug" : "", __DATE__, __TIME__, currentDateTime().c_str()); @@ -729,10 +765,6 @@ /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp:56:108: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 56 | Log.Message("ngmlr %s%s (build: %s %s, start: %s)", version.str().c_str(), cDebug ? " debug" : "", __DATE__, __TIME__, currentDateTime().c_str()); | ^~~~~~~~ -[ 52%] Building CXX object src/CMakeFiles/ngmlr.dir/NGMTask.cpp.o -cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/NGMTask.cpp.o -MF CMakeFiles/ngmlr.dir/NGMTask.cpp.o.d -o CMakeFiles/ngmlr.dir/NGMTask.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/NGMTask.cpp -[ 56%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o -cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o -MF CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o.d -o CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/AlignmentBuffer.cpp /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp: In function ‘std::string add_timestamp(std::string)’: /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp:118:41: warning: ‘%02i’ directive writing between 2 and 11 bytes into a region of size between 8 and 15 [-Wformat-overflow=] 118 | sprintf(timestamp, "%4i-%02i-%02i_%02i-%02i-%02i", tm->tm_year + 1900, tm->tm_mon + 1, tm->tm_mday, tm->tm_hour, tm->tm_min, @@ -751,27 +783,31 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ +[ 52%] Building CXX object src/CMakeFiles/ngmlr.dir/NGMTask.cpp.o +cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/NGMTask.cpp.o -MF CMakeFiles/ngmlr.dir/NGMTask.cpp.o.d -o CMakeFiles/ngmlr.dir/NGMTask.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/NGMTask.cpp +[ 56%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o +cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o -MF CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o.d -o CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/AlignmentBuffer.cpp [ 60%] Building CXX object src/CMakeFiles/ngmlr.dir/PrefixTable.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/PrefixTable.cpp.o -MF CMakeFiles/ngmlr.dir/PrefixTable.cpp.o.d -o CMakeFiles/ngmlr.dir/PrefixTable.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/PrefixTable.cpp [ 64%] Building CXX object src/CMakeFiles/ngmlr.dir/ReadProvider.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ReadProvider.cpp.o -MF CMakeFiles/ngmlr.dir/ReadProvider.cpp.o.d -o CMakeFiles/ngmlr.dir/ReadProvider.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ReadProvider.cpp -[ 68%] Building CXX object src/CMakeFiles/ngmlr.dir/SamParser.cpp.o -cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/SamParser.cpp.o -MF CMakeFiles/ngmlr.dir/SamParser.cpp.o.d -o CMakeFiles/ngmlr.dir/SamParser.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SamParser.cpp -[ 72%] Building CXX object src/CMakeFiles/ngmlr.dir/SAMWriter.cpp.o +[ 68%] Building CXX object src/CMakeFiles/ngmlr.dir/SAMWriter.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/SAMWriter.cpp.o -MF CMakeFiles/ngmlr.dir/SAMWriter.cpp.o.d -o CMakeFiles/ngmlr.dir/SAMWriter.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SAMWriter.cpp +[ 72%] Building CXX object src/CMakeFiles/ngmlr.dir/SamParser.cpp.o [ 76%] Building CXX object src/CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o +cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/SamParser.cpp.o -MF CMakeFiles/ngmlr.dir/SamParser.cpp.o.d -o CMakeFiles/ngmlr.dir/SamParser.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SamParser.cpp cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o -MF CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o.d -o CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SequenceProvider.cpp [ 80%] Building CXX object src/CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o -MF CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o.d -o CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp [ 84%] Building CXX object src/CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o -MF CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o.d -o CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ScoreBuffer.cpp -[ 88%] Building CXX object src/CMakeFiles/ngmlr.dir/StrippedSW.cpp.o -cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/StrippedSW.cpp.o -MF CMakeFiles/ngmlr.dir/StrippedSW.cpp.o.d -o CMakeFiles/ngmlr.dir/StrippedSW.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/StrippedSW.cpp /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp: In destructor ‘OutputReadBuffer::~OutputReadBuffer()’: /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp:17:17: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 17 | throw "Elements left in buffer!"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp:17:17: note: in C++11 destructors default to ‘noexcept’ +[ 88%] Building CXX object src/CMakeFiles/ngmlr.dir/StrippedSW.cpp.o +cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/StrippedSW.cpp.o -MF CMakeFiles/ngmlr.dir/StrippedSW.cpp.o.d -o CMakeFiles/ngmlr.dir/StrippedSW.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/StrippedSW.cpp [ 92%] Building CXX object src/CMakeFiles/ngmlr.dir/unix.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/unix.cpp.o -MF CMakeFiles/ngmlr.dir/unix.cpp.o.d -o CMakeFiles/ngmlr.dir/unix.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/unix.cpp [ 96%] Building CXX object src/CMakeFiles/ngmlr.dir/unix_threads.cpp.o @@ -824,8 +860,8 @@ dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake -dpkg-deb: building package 'ngmlr' in '../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.deb'. dpkg-deb: building package 'ngmlr-dbgsym' in '../ngmlr-dbgsym_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.deb'. +dpkg-deb: building package 'ngmlr' in '../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.buildinfo dpkg-genchanges --build=binary -O../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -833,12 +869,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/452717/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/452717/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1719223 and its subdirectories -I: Current time: Thu Sep 26 19:24:59 -12 2024 -I: pbuilder-time-stamp: 1727421899 +I: removing directory /srv/workspace/pbuilder/452717 and its subdirectories +I: Current time: Fri Oct 31 03:49:14 +14 2025 +I: pbuilder-time-stamp: 1761832154 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.diff: 85.8% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.diff.gz b2/build.log: 83.7% -- replaced with stdout Compressing the 1st log... b1/build.log: 84.2% -- replaced with stdout Fri Sep 27 07:26:18 UTC 2024 I: diffoscope 277 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_ngmlr_trixie_arm64_1727421978 + touch /var/log/reproducible-builds/diffoscope_stamp_ngmlr_trixie_arm64_1727421978 + RESULT=0 + systemd-run '--description=diffoscope on ngmlr/0.2.7+git20210816.a2a31fb+dfsg-2 in trixie/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_4-37307 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO --run-session -c jenkins-reproducible-trixie-diffoscope-2070767b-c33a-46e8-8377-7de9ab538db5 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO/dbd-tmp-s2WETdG ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO/ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO/ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO/ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO/b1/ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO/b2/ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_4-37307.service Warning: program compiled against libxml 212 using older 209 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO/ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO/ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO/ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO/b1/ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.HJsaWvcO/b2/ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.409s) 0.409s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.036s) 0.036s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 736ms CPU time consumed: 734ms _ _ __ __ _ _ __ ___ | |_ __ | '_ \ / _` | '_ ` _ \| | '__| | | | | (_| | | | | | | | | |_| |_|\__, |_| |_| |_|_|_| |___/ Fri Sep 27 07:26:19 UTC 2024 I: diffoscope 277 found no differences in the changes files, and a .buildinfo file also exists. Fri Sep 27 07:26:19 UTC 2024 I: ngmlr from trixie built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-09-27 07:26:20] INFO: Starting at 2024-09-27 07:26:20.543849 [2024-09-27 07:26:20] INFO: Generating the pages of 1 package(s) [2024-09-27 07:26:20] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/arm64/ngmlr didn't produce a buildlog, even though it has been built. [2024-09-27 07:26:21] INFO: Finished at 2024-09-27 07:26:21.034105, took: 0:00:00.490263 Fri Sep 27 07:26:21 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/arm64/ngmlr.html Fri Sep 27 07:26:21 UTC 2024 I: Submitting .buildinfo files to external archives: Fri Sep 27 07:26:21 UTC 2024 I: Submitting 8.0K b1/ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.buildinfo.asc https://buildinfo.debian.net/d1e786757017b1a96914b1f5ad9e1c8ac7188d2e/ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64 Fri Sep 27 07:26:21 UTC 2024 I: Submitting 8.0K b2/ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.buildinfo.asc https://buildinfo.debian.net/29d1b7021af558f8a29177b088b24a36953477d7/ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64 Fri Sep 27 07:26:22 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Sep 27 07:26:22 UTC 2024 I: Done submitting .buildinfo files. Fri Sep 27 07:26:22 UTC 2024 I: Removing signed ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.buildinfo.asc files: removed './b1/ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.buildinfo.asc' removed './b2/ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_arm64.buildinfo.asc' 1727421982 arm64 trixie ngmlr Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.rbuild.log: 81.9% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.rbuild.log.gz [2024-09-27 07:26:23] INFO: Starting at 2024-09-27 07:26:23.071879 [2024-09-27 07:26:23] INFO: Generating the pages of 1 package(s) [2024-09-27 07:26:23] INFO: Finished at 2024-09-27 07:26:23.567342, took: 0:00:00.495471 All cleanup done. Fri Sep 27 07:26:23 UTC 2024 - total duration: 0h 3m 15s. Fri Sep 27 07:26:23 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-x2sSACFB, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 3min 18.882s CPU time consumed: 8.329s