Running as unit: rb-build-arm64_4-37653.service ==================================================================================== Sat Sep 28 17:32:07 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_4) on jenkins, called using "codethink02-arm64 codethink01-arm64" as arguments. Sat Sep 28 17:32:07 UTC 2024 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-ucxJXzXr" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Sep 28 17:32:07 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink02-arm64.debian.net is marked as down. Sat Sep 28 17:32:07 UTC 2024 - checking via ssh if codethink02-arm64.debian.net is up. removed '/tmp/read-only-fs-test-w4ZGLQ' Sat Sep 28 17:32:08 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink01-arm64.debian.net is marked as down. Sat Sep 28 17:32:08 UTC 2024 - checking via ssh if codethink01-arm64.debian.net is up. removed '/tmp/read-only-fs-test-met86i' ok, let's check if q2-dada2 is building anywhere yet… ok, q2-dada2 is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of q2-dada2 in unstable on arm64 on jenkins now. 1st build will be done on codethink02-arm64.debian.net. 2nd build will be done on codethink01-arm64.debian.net. ============================================================================= Sat Sep 28 17:32:30 UTC 2024 I: starting to build q2-dada2/unstable/arm64 on jenkins on '2024-09-28 17:32' Sat Sep 28 17:32:30 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_4/37653/console.log 1727544750 arm64 unstable q2-dada2 Sat Sep 28 17:32:30 UTC 2024 I: Downloading source for unstable/q2-dada2=2024.5.0-1 --2024-09-28 17:32:31-- http://deb.debian.org/debian/pool/main/q/q2-dada2/q2-dada2_2024.5.0-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2086 (2.0K) [text/prs.lines.tag] Saving to: ‘q2-dada2_2024.5.0-1.dsc’ 0K .. 100% 211M=0s 2024-09-28 17:32:31 (211 MB/s) - ‘q2-dada2_2024.5.0-1.dsc’ saved [2086/2086] --2024-09-28 17:32:31-- http://deb.debian.org/debian/pool/main/q/q2-dada2/q2-dada2_2024.5.0-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2086 (2.0K) [text/prs.lines.tag] Saving to: ‘q2-dada2_2024.5.0-1.dsc’ 0K .. 100% 211M=0s 2024-09-28 17:32:31 (211 MB/s) - ‘q2-dada2_2024.5.0-1.dsc’ saved [2086/2086] Sat Sep 28 17:32:31 UTC 2024 I: q2-dada2_2024.5.0-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: q2-dada2 Binary: q2-dada2 Architecture: any Version: 2024.5.0-1 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://qiime2.org/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/q2-dada2 Vcs-Git: https://salsa.debian.org/med-team/q2-dada2.git Testsuite: autopkgtest Testsuite-Triggers: python3-all, python3-pytest-cov Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools, qiime (>= 2024.5), r-bioc-dada2 Package-List: q2-dada2 deb science optional arch=any Checksums-Sha1: f4de1f4e625396e2e1fe787755c46b54e793e1dc 2236550 q2-dada2_2024.5.0.orig.tar.gz 60c87221d96dee5b5187df31fd628ef5bc15d33c 6752 q2-dada2_2024.5.0-1.debian.tar.xz Checksums-Sha256: c78342f4178c0aee877516d3d41ffd07a7397d15b81a72007c3b10bcc58ffc9c 2236550 q2-dada2_2024.5.0.orig.tar.gz bff864405af6c4d37744b7882e88d511cce6fa7a782cc3a7176597d7475f4e41 6752 q2-dada2_2024.5.0-1.debian.tar.xz Files: fd59a9984597d20e648db0bdbb89ee45 2236550 q2-dada2_2024.5.0.orig.tar.gz d4c38cd17efd21e96d7e33c70a78a174 6752 q2-dada2_2024.5.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmZ8JIcACgkQPCZ2P2xn 5uIw2g//cF3/OUpMSZQnu54FmoipWTVjvBynU9Zc/FN/S+W+g0KHZPOvcmcRz2WA kT1DDV0vlCqQCvxjCrMF6BVgVJKKJZz0k7C1m1oWbNAh2t9hEaBTXdEFTCXnP5aB 1mnp7wm0VaI/Y6dbwjaIlxAESdMvk9hhI8TLT/TFSYR57FCcGSuTxddv2g2sF83K sNLw1s73NTOvOHV8WQYz68Qt0YBApFIrkCeuHVHkLI96ZxJndjnXTt685UVSmDNU wyFF1F1fLGUTX9R9C2UeqysovSWYmS4q8Ib9CfYjn6uwGSebTh/tR0KAfOGZO0qj 0NKfl4QV6gtg22o23elCH/+G5zKgNVOlXFCyytz54pkubhomvTRDu5VzpiTM47Cx H6CQ+DdQ7QqnJFRRAtoSaEOhNR2RwAxrh5lNyqRsbPN7gHhoF6vGIXh08Pg3RRiU gs2po7BFs2nIU0lxCFfGikT6Y9VZwdiVb4Pmk0fnTyuW+C2WaDUOTlkj8uJdOgHh trgWL7AmusNjUU5ixivnvS4dsrXqjxYw1AE5AGkoeRzB10ps2lz/6n29wajQOOLQ 5j+iJwWhhS3SDHmUYdxUHI82wwsE8V/jzS0W7baNgvxmsZov6d105wIJ2yXIcsxD ChGSJYBqFxdQysQG7OuAXeuAaAErjSq8KWVprTD3evoTqeyRMzI= =TGnT -----END PGP SIGNATURE----- Sat Sep 28 17:32:31 UTC 2024 I: Checking whether the package is not for us Sat Sep 28 17:32:31 UTC 2024 I: Starting 1st build on remote node codethink02-arm64.debian.net. Sat Sep 28 17:32:31 UTC 2024 I: Preparing to do remote build '1' on codethink02-arm64.debian.net. Sat Sep 28 17:32:31 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink02-arm64.debian.net is marked as down. Sat Sep 28 17:32:31 UTC 2024 - checking via ssh if codethink02-arm64.debian.net is up. removed '/tmp/read-only-fs-test-CPR1K2' ==================================================================================== Sat Sep 28 17:32:32 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink02-arm64, called using "1 q2-dada2 unstable /srv/reproducible-results/rbuild-debian/r-b-build.xUoSHRvc 2024.5.0-1" as arguments. Sat Sep 28 17:32:32 UTC 2024 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-M4Ruz7ta" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Sep 28 17:32:32 UTC 2024 I: Downloading source for unstable/q2-dada2=2024.5.0-1 Reading package lists... NOTICE: 'q2-dada2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/q2-dada2.git Please use: git clone https://salsa.debian.org/med-team/q2-dada2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2245 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main q2-dada2 2024.5.0-1 (dsc) [2086 B] Get:2 http://deb.debian.org/debian unstable/main q2-dada2 2024.5.0-1 (tar) [2237 kB] Get:3 http://deb.debian.org/debian unstable/main q2-dada2 2024.5.0-1 (diff) [6752 B] Fetched 2245 kB in 0s (27.3 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'q2-dada2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/q2-dada2.git Please use: git clone https://salsa.debian.org/med-team/q2-dada2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2245 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main q2-dada2 2024.5.0-1 (dsc) [2086 B] Get:2 http://deb.debian.org/debian unstable/main q2-dada2 2024.5.0-1 (tar) [2237 kB] Get:3 http://deb.debian.org/debian unstable/main q2-dada2 2024.5.0-1 (diff) [6752 B] Fetched 2245 kB in 0s (27.3 MB/s) Download complete and in download only mode ============================================================================= Building q2-dada2 in unstable on arm64 on codethink02-arm64 now. Date: Sat Sep 28 18:32:33 BST 2024 Date UTC: Sat Sep 28 17:32:33 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sat Sep 28 05:32:33 -12 2024 I: pbuilder-time-stamp: 1727544753 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [q2-dada2_2024.5.0-1.dsc] I: copying [./q2-dada2_2024.5.0.orig.tar.gz] I: copying [./q2-dada2_2024.5.0-1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Jun 26 14:24:07 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./q2-dada2_2024.5.0-1.dsc: no acceptable signature found dpkg-source: info: extracting q2-dada2 in q2-dada2-2024.5.0 dpkg-source: info: unpacking q2-dada2_2024.5.0.orig.tar.gz dpkg-source: info: unpacking q2-dada2_2024.5.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying configparser.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1980651/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='f2338d8044ab4e64beeb37559074f159' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1980651' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.xUoSHRvc/pbuilderrc_hinL --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.xUoSHRvc/b1 --logfile b1/build.log q2-dada2_2024.5.0-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1980651/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools, qiime (>= 2024.5), r-bioc-dada2 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19896 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on qiime (>= 2024.5); however: Package qiime is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-dada2; however: Package r-bioc-dada2 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-glyphicons-halflings{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} javascript-common{a} libarchive-zip-perl{a} libblas3{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libicu72{a} libjs-bootstrap{a} libjs-jquery{a} libjs-popper.js{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libnorm1t64{a} libnsl2{a} libpgm-5.3-0t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libsodium23{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} libxslt1.1{a} libyaml-0-2{a} libzmq5{a} m4{a} man-db{a} media-types{a} netbase{a} node-fortawesome-fontawesome-free{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-bcrypt{a} python3-bibtexparser{a} python3-blinker{a} python3-certifi{a} python3-cffi-backend{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-cryptography{a} python3-dateutil{a} python3-decorator{a} python3-dill{a} python3-filelock{a} python3-flask{a} python3-flask-sqlalchemy{a} python3-flufl.lock{a} python3-globus-sdk{a} python3-greenlet{a} python3-idna{a} python3-inflect{a} python3-itsdangerous{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jinja2{a} python3-jwt{a} python3-lxml{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-networkx{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-parsl{a} python3-pkg-resources{a} python3-platformdirs{a} python3-psutil{a} python3-public{a} python3-py{a} python3-pyparsing{a} python3-requests{a} python3-setproctitle{a} python3-setuptools{a} python3-six{a} python3-sqlalchemy{a} python3-tblib{a} python3-tomlkit{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-tzlocal{a} python3-urllib3{a} python3-werkzeug{a} python3-yaml{a} python3-zipp{a} python3-zmq{a} python3.12{a} python3.12-minimal{a} qiime{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx node-jquery python3-asgiref python3-babel python3-bottleneck python3-bs4 python3-cssselect python3-dotenv python3-gdal python3-html5lib python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-openssl python3-pydot python3-pygraphviz python3-pyinotify python3-scipy python3-simplejson python3-sqlalchemy-ext python3-tables q2-cutadapt q2-demux q2-feature-classifier q2-feature-table q2-metadata q2-quality-filter q2-types q2cli q2templates r-cran-plotly wget 0 packages upgraded, 128 newly installed, 0 to remove and 0 not upgraded. Need to get 65.6 MB of archives. After unpacking 321 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: r-bioc-dada2 which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-glyphicons-halflings{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} javascript-common{a} libarchive-zip-perl{a} libblas3{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libicu72{a} libjs-bootstrap{a} libjs-jquery{a} libjs-popper.js{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libnorm1t64{a} libnsl2{a} libpgm-5.3-0t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libsodium23{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} libxslt1.1{a} libyaml-0-2{a} libzmq5{a} m4{a} man-db{a} media-types{a} netbase{a} node-fortawesome-fontawesome-free{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-bcrypt{a} python3-bibtexparser{a} python3-blinker{a} python3-certifi{a} python3-cffi-backend{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-cryptography{a} python3-dateutil{a} python3-decorator{a} python3-dill{a} python3-filelock{a} python3-flask{a} python3-flask-sqlalchemy{a} python3-flufl.lock{a} python3-globus-sdk{a} python3-greenlet{a} python3-idna{a} python3-inflect{a} python3-itsdangerous{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jinja2{a} python3-jwt{a} python3-lxml{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-networkx{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-parsl{a} python3-pkg-resources{a} python3-platformdirs{a} python3-psutil{a} python3-public{a} python3-py{a} python3-pyparsing{a} python3-requests{a} python3-setproctitle{a} python3-setuptools{a} python3-six{a} python3-sqlalchemy{a} python3-tblib{a} python3-tomlkit{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-tzlocal{a} python3-urllib3{a} python3-werkzeug{a} python3-yaml{a} python3-zipp{a} python3-zmq{a} python3.12{a} python3.12-minimal{a} qiime{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx node-jquery python3-asgiref python3-babel python3-bottleneck python3-bs4 python3-cssselect python3-dotenv python3-gdal python3-html5lib python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-openssl python3-pydot python3-pygraphviz python3-pyinotify python3-scipy python3-simplejson python3-sqlalchemy-ext python3-tables q2-cutadapt q2-demux q2-feature-classifier q2-feature-table q2-metadata q2-quality-filter q2-types q2cli q2templates r-cran-plotly wget 0 packages upgraded, 128 newly installed, 0 to remove and 0 not upgraded. Need to get 65.6 MB of archives. After unpacking 321 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1980651 and its subdirectories Starting cleanup. All cleanup done. Sat Sep 28 17:32:54 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-M4Ruz7ta, removing. /srv/reproducible-results/rbuild-debian/r-b-build.xUoSHRvc: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Sep 28 17:32 b1 drwxr-xr-x 2 jenkins jenkins 4096 Sep 28 17:32 b2 -rw-r--r-- 1 jenkins jenkins 2086 Jun 26 15:34 q2-dada2_2024.5.0-1.dsc -rw------- 1 jenkins jenkins 3217 Sep 28 17:32 rbuildlog.qXoxpMn /srv/reproducible-results/rbuild-debian/r-b-build.xUoSHRvc/b1: total 12 -rw-r--r-- 1 jenkins jenkins 12133 Sep 28 17:32 build.log /srv/reproducible-results/rbuild-debian/r-b-build.xUoSHRvc/b2: total 0 Sat Sep 28 17:32:55 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Sep 28 05:32:33 -12 2024 I: pbuilder-time-stamp: 1727544753 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [q2-dada2_2024.5.0-1.dsc] I: copying [./q2-dada2_2024.5.0.orig.tar.gz] I: copying [./q2-dada2_2024.5.0-1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Jun 26 14:24:07 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./q2-dada2_2024.5.0-1.dsc: no acceptable signature found dpkg-source: info: extracting q2-dada2 in q2-dada2-2024.5.0 dpkg-source: info: unpacking q2-dada2_2024.5.0.orig.tar.gz dpkg-source: info: unpacking q2-dada2_2024.5.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying configparser.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1980651/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='f2338d8044ab4e64beeb37559074f159' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1980651' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.xUoSHRvc/pbuilderrc_hinL --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.xUoSHRvc/b1 --logfile b1/build.log q2-dada2_2024.5.0-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1980651/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools, qiime (>= 2024.5), r-bioc-dada2 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19896 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on qiime (>= 2024.5); however: Package qiime is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-dada2; however: Package r-bioc-dada2 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-glyphicons-halflings{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} javascript-common{a} libarchive-zip-perl{a} libblas3{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libicu72{a} libjs-bootstrap{a} libjs-jquery{a} libjs-popper.js{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libnorm1t64{a} libnsl2{a} libpgm-5.3-0t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libsodium23{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} libxslt1.1{a} libyaml-0-2{a} libzmq5{a} m4{a} man-db{a} media-types{a} netbase{a} node-fortawesome-fontawesome-free{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-bcrypt{a} python3-bibtexparser{a} python3-blinker{a} python3-certifi{a} python3-cffi-backend{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-cryptography{a} python3-dateutil{a} python3-decorator{a} python3-dill{a} python3-filelock{a} python3-flask{a} python3-flask-sqlalchemy{a} python3-flufl.lock{a} python3-globus-sdk{a} python3-greenlet{a} python3-idna{a} python3-inflect{a} python3-itsdangerous{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jinja2{a} python3-jwt{a} python3-lxml{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-networkx{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-parsl{a} python3-pkg-resources{a} python3-platformdirs{a} python3-psutil{a} python3-public{a} python3-py{a} python3-pyparsing{a} python3-requests{a} python3-setproctitle{a} python3-setuptools{a} python3-six{a} python3-sqlalchemy{a} python3-tblib{a} python3-tomlkit{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-tzlocal{a} python3-urllib3{a} python3-werkzeug{a} python3-yaml{a} python3-zipp{a} python3-zmq{a} python3.12{a} python3.12-minimal{a} qiime{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx node-jquery python3-asgiref python3-babel python3-bottleneck python3-bs4 python3-cssselect python3-dotenv python3-gdal python3-html5lib python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-openssl python3-pydot python3-pygraphviz python3-pyinotify python3-scipy python3-simplejson python3-sqlalchemy-ext python3-tables q2-cutadapt q2-demux q2-feature-classifier q2-feature-table q2-metadata q2-quality-filter q2-types q2cli q2templates r-cran-plotly wget 0 packages upgraded, 128 newly installed, 0 to remove and 0 not upgraded. Need to get 65.6 MB of archives. After unpacking 321 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: r-bioc-dada2 which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-glyphicons-halflings{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} javascript-common{a} libarchive-zip-perl{a} libblas3{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libicu72{a} libjs-bootstrap{a} libjs-jquery{a} libjs-popper.js{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libnorm1t64{a} libnsl2{a} libpgm-5.3-0t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libsodium23{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} libxslt1.1{a} libyaml-0-2{a} libzmq5{a} m4{a} man-db{a} media-types{a} netbase{a} node-fortawesome-fontawesome-free{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-bcrypt{a} python3-bibtexparser{a} python3-blinker{a} python3-certifi{a} python3-cffi-backend{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-cryptography{a} python3-dateutil{a} python3-decorator{a} python3-dill{a} python3-filelock{a} python3-flask{a} python3-flask-sqlalchemy{a} python3-flufl.lock{a} python3-globus-sdk{a} python3-greenlet{a} python3-idna{a} python3-inflect{a} python3-itsdangerous{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jinja2{a} python3-jwt{a} python3-lxml{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-networkx{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-parsl{a} python3-pkg-resources{a} python3-platformdirs{a} python3-psutil{a} python3-public{a} python3-py{a} python3-pyparsing{a} python3-requests{a} python3-setproctitle{a} python3-setuptools{a} python3-six{a} python3-sqlalchemy{a} python3-tblib{a} python3-tomlkit{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-tzlocal{a} python3-urllib3{a} python3-werkzeug{a} python3-yaml{a} python3-zipp{a} python3-zmq{a} python3.12{a} python3.12-minimal{a} qiime{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx node-jquery python3-asgiref python3-babel python3-bottleneck python3-bs4 python3-cssselect python3-dotenv python3-gdal python3-html5lib python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-openssl python3-pydot python3-pygraphviz python3-pyinotify python3-scipy python3-simplejson python3-sqlalchemy-ext python3-tables q2-cutadapt q2-demux q2-feature-classifier q2-feature-table q2-metadata q2-quality-filter q2-types q2cli q2templates r-cran-plotly wget 0 packages upgraded, 128 newly installed, 0 to remove and 0 not upgraded. Need to get 65.6 MB of archives. After unpacking 321 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1980651 and its subdirectories q2-dada2 failed to build from source. removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/q2-dada2_2024.5.0-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/q2-dada2_2024.5.0-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/q2-dada2_2024.5.0-1.build1.log.gz' Sat Sep 28 17:32:56 UTC 2024 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 71.2% -- replaced with stdout Sat Sep 28 17:32:56 UTC 2024 W: Downloading the build dependencies failed Sat Sep 28 17:32:56 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Sat Sep 28 17:32:56 UTC 2024 W: Network problems are automatically rescheduled after some hours. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-09-28 17:32:57] INFO: Starting at 2024-09-28 17:32:57.048239 [2024-09-28 17:32:57] INFO: Generating the pages of 1 package(s) [2024-09-28 17:32:57] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/arm64/q2-dada2 didn't produce a buildlog, even though it has been built. [2024-09-28 17:32:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/q2-dada2_2024.5.0-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/q2-dada2_2024.5.0-1.diff.gz is missing [2024-09-28 17:32:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/q2-dada2_2024.5.0-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/q2-dada2_2024.5.0-1.diff.gz is missing [2024-09-28 17:32:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/q2-dada2_2022.11.2-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/arm64/q2-dada2_2022.11.2-2.diff.gz is missing [2024-09-28 17:32:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/q2-dada2_2022.11.2-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/q2-dada2_2022.11.2-2.diff.gz is missing [2024-09-28 17:32:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/q2-dada2_2022.11.2-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/q2-dada2_2022.11.2-2.diff.gz is missing [2024-09-28 17:32:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/q2-dada2_2020.11.1-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/q2-dada2_2020.11.1-3.diff.gz is missing [2024-09-28 17:32:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/q2-dada2_2020.11.1-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/q2-dada2_2020.11.1-3.diff.gz is missing [2024-09-28 17:32:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/q2-dada2_2020.11.1-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/q2-dada2_2020.11.1-3.diff.gz is missing [2024-09-28 17:32:57] INFO: Finished at 2024-09-28 17:32:57.999640, took: 0:00:00.951406 Sat Sep 28 17:32:58 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/arm64/q2-dada2.html Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/q2-dada2_2024.5.0-1.rbuild.log: 66.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/q2-dada2_2024.5.0-1.rbuild.log.gz [2024-09-28 17:32:58] INFO: Starting at 2024-09-28 17:32:58.531902 [2024-09-28 17:32:58] INFO: Generating the pages of 1 package(s) [2024-09-28 17:32:59] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/q2-dada2_2024.5.0-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/q2-dada2_2024.5.0-1.diff.gz is missing [2024-09-28 17:32:59] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/q2-dada2_2024.5.0-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/q2-dada2_2024.5.0-1.diff.gz is missing [2024-09-28 17:32:59] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/q2-dada2_2024.5.0-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/q2-dada2_2024.5.0-1.diff.gz is missing [2024-09-28 17:32:59] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/q2-dada2_2022.11.2-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/arm64/q2-dada2_2022.11.2-2.diff.gz is missing [2024-09-28 17:32:59] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/q2-dada2_2022.11.2-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/q2-dada2_2022.11.2-2.diff.gz is missing [2024-09-28 17:32:59] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/q2-dada2_2022.11.2-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/q2-dada2_2022.11.2-2.diff.gz is missing [2024-09-28 17:32:59] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/q2-dada2_2020.11.1-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/q2-dada2_2020.11.1-3.diff.gz is missing [2024-09-28 17:32:59] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/q2-dada2_2020.11.1-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/q2-dada2_2020.11.1-3.diff.gz is missing [2024-09-28 17:32:59] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/q2-dada2_2020.11.1-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/q2-dada2_2020.11.1-3.diff.gz is missing [2024-09-28 17:32:59] INFO: Finished at 2024-09-28 17:32:59.664315, took: 0:00:01.132419 All cleanup done. Sat Sep 28 17:32:59 UTC 2024 - total duration: 0h 0m 49s. Sat Sep 28 17:32:59 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-ucxJXzXr, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 52.647s CPU time consumed: 6.997s