Running as unit: rb-build-arm64_4-58356.service ==================================================================================== Sat Feb 22 13:35:23 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_4) on jenkins, called using "codethink03-arm64 codethink04-arm64" as arguments. Sat Feb 22 13:35:23 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-N4l9JGXj" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Feb 22 13:35:23 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Sat Feb 22 13:35:23 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-8fhBKV' Sat Feb 22 13:35:24 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Sat Feb 22 13:35:24 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-OftB8U' ok, let's check if python-biom-format is building anywhere yet… ok, python-biom-format is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of python-biom-format in trixie on arm64 on jenkins now. 1st build will be done on codethink03-arm64.debian.net. 2nd build will be done on codethink04-arm64.debian.net. ============================================================================= Sat Feb 22 13:35:36 UTC 2025 I: starting to build python-biom-format/trixie/arm64 on jenkins on '2025-02-22 13:35' Sat Feb 22 13:35:36 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_4/58356/console.log 1740231336 arm64 trixie python-biom-format Sat Feb 22 13:35:36 UTC 2025 I: Downloading source for trixie/python-biom-format=2.1.16-1 --2025-02-22 13:35:36-- http://deb.debian.org/debian/pool/main/p/python-biom-format/python-biom-format_2.1.16-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2628 (2.6K) [text/prs.lines.tag] Saving to: ‘python-biom-format_2.1.16-1.dsc’ 0K .. 100% 399M=0s 2025-02-22 13:35:36 (399 MB/s) - ‘python-biom-format_2.1.16-1.dsc’ saved [2628/2628] --2025-02-22 13:35:36-- http://deb.debian.org/debian/pool/main/p/python-biom-format/python-biom-format_2.1.16-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2628 (2.6K) [text/prs.lines.tag] Saving to: ‘python-biom-format_2.1.16-1.dsc’ 0K .. 100% 399M=0s 2025-02-22 13:35:36 (399 MB/s) - ‘python-biom-format_2.1.16-1.dsc’ saved [2628/2628] Sat Feb 22 13:35:36 UTC 2025 I: python-biom-format_2.1.16-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-biom-format Binary: python3-biom-format, python-biom-format-doc Architecture: any all Version: 2.1.16-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://biom-format.org/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/python-biom-format Vcs-Git: https://salsa.debian.org/med-team/python-biom-format.git Testsuite: autopkgtest, autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-sequence-python3, help2man, bash-completion, cython3, python3-all-dev, python3-click, python3-h5py, python3-numpy, python3-numpydoc, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx, python3-matplotlib, python3-pytest , python3-pytest-cov Package-List: python-biom-format-doc deb doc optional arch=all python3-biom-format deb python optional arch=any Checksums-Sha1: b417c11e08e337880156bdda88ab5ca6c9466e90 11896065 python-biom-format_2.1.16.orig.tar.gz d04bfbe827450a808817ffdb34634bd24ce0bc55 11564 python-biom-format_2.1.16-1.debian.tar.xz Checksums-Sha256: 17e135c4ed7e003f7b35e7f7cec8ce02c1c22fd06ff6a404887ea1ef4205693a 11896065 python-biom-format_2.1.16.orig.tar.gz 1181693232db732053e32be2b5105227cd5bd755f272a8accab220e2bbb1d091 11564 python-biom-format_2.1.16-1.debian.tar.xz Files: b833addd927258a146ba2444f61529eb 11896065 python-biom-format_2.1.16.orig.tar.gz 20338d1c1fdcb1830732f53a66673d4d 11564 python-biom-format_2.1.16-1.debian.tar.xz Dgit: 3e4793e9bfdb150e61ff2a7bbbfe29510f8824f6 debian archive/debian/2.1.16-1 https://git.dgit.debian.org/python-biom-format -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmZU8IIUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqxCw//UhuipGyQyNUM7ayp49puLAZDmuz1 X4mb22LAN9JV44EZbPWqTq1nscmy0Kp3ZkXx6OaddxKFphgf4sQBYNR2/k3ZxDz1 wl6ZVphbEQtbp08lk16t+1X3Xc7MCiMjlMbGRaG9YTuGsFTu4U6DiNhDM/TaJ6Pu 7A46KNLVSO/4PIFpx60odEf67F8Vjm6go1zChZd8VPvLyQYEFjOLduczWht4eMJE 0+6UofUt+mJgNF8L0bLBCDiFl8mWu9xKJAkTaOksQO50oKqmHIgQisFFytcZSD+4 r3IYjYKbFGKeuWutPOBsMA6IHEY2B6yoHIT1ljXXZ9pYmrk5bymVnS6w1oKAp6hV bbhNpFs4oAOAuNd3hugUEHdOXBXSo2vm87iUnQ0fzGM8D8GwcIkGLMwNuE7kMKon xuYNsGkZ5Hr2pLqTlTnEyeTZopDPU9bTXXunkhutg4X/aAeZFd0gjWArO6Jv6Tov Yw3w7s3ynIK3fbXYCJHXdYy+5y5zhuvEaytcAl6WfKVzACjRGkyIuQ65YJCbSVMQ 3JExOxhBTotB9opVicxqjqoHPsRfSt7xDqndxfSI98ou88TN9Pf09DXOBYCb53Wn jpAhk7GofTVclqsH1+e5ce+dJOxIyV/rv0Hwwan/zSITCnv8S5W+BKjUU65TYVYB gjLu3URD6cVN+RQ= =V5NQ -----END PGP SIGNATURE----- Sat Feb 22 13:35:36 UTC 2025 I: Checking whether the package is not for us Sat Feb 22 13:35:36 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Sat Feb 22 13:35:36 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Sat Feb 22 13:35:36 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Sat Feb 22 13:35:36 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-dPSyd3' ==================================================================================== Fri Mar 27 19:58:38 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "1 python-biom-format trixie /srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly 2.1.16-1" as arguments. Fri Mar 27 19:58:38 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-peR36BN6" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Mar 27 19:58:38 UTC 2026 I: Downloading source for trixie/python-biom-format=2.1.16-1 Reading package lists... NOTICE: 'python-biom-format' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-biom-format.git Please use: git clone https://salsa.debian.org/med-team/python-biom-format.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 11.9 MB of source archives. Get:1 http://deb.debian.org/debian trixie/main python-biom-format 2.1.16-1 (dsc) [2628 B] Get:2 http://deb.debian.org/debian trixie/main python-biom-format 2.1.16-1 (tar) [11.9 MB] Get:3 http://deb.debian.org/debian trixie/main python-biom-format 2.1.16-1 (diff) [11.6 kB] Fetched 11.9 MB in 1s (21.9 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'python-biom-format' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-biom-format.git Please use: git clone https://salsa.debian.org/med-team/python-biom-format.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 11.9 MB of source archives. Get:1 http://deb.debian.org/debian trixie/main python-biom-format 2.1.16-1 (dsc) [2628 B] Get:2 http://deb.debian.org/debian trixie/main python-biom-format 2.1.16-1 (tar) [11.9 MB] Get:3 http://deb.debian.org/debian trixie/main python-biom-format 2.1.16-1 (diff) [11.6 kB] Fetched 11.9 MB in 1s (21.9 MB/s) Download complete and in download only mode ============================================================================= Building python-biom-format in trixie on arm64 on codethink03-arm64 now. Date: Fri Mar 27 19:58:39 GMT 2026 Date UTC: Fri Mar 27 19:58:39 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Mar 27 07:58:39 -12 2026 I: pbuilder-time-stamp: 1774641519 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-biom-format_2.1.16-1.dsc] I: copying [./python-biom-format_2.1.16.orig.tar.gz] I: copying [./python-biom-format_2.1.16-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-biom-format_2.1.16-1.dsc: unsupported subcommand dpkg-source: info: extracting python-biom-format in python-biom-format-2.1.16 dpkg-source: info: unpacking python-biom-format_2.1.16.orig.tar.gz dpkg-source: info: unpacking python-biom-format_2.1.16-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying ignore_local_dist-packages.patch dpkg-source: info: applying no-web-adds.patch dpkg-source: info: applying fix_future_import.patch dpkg-source: info: applying sphinx_1.6.patch dpkg-source: info: applying posix_shell.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3219725/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='679a7a6de31742c6b620743ddc4b044a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3219725' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly/pbuilderrc_PVXH --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly/b1 --logfile b1/build.log python-biom-format_2.1.16-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3219725/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, help2man, bash-completion, cython3, python3-all-dev, python3-click, python3-h5py, python3-numpy, python3-numpydoc, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx, python3-matplotlib, python3-pytest, python3-pytest-cov dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19922 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on bash-completion; however: Package bash-completion is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-click; however: Package python3-click is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-numpydoc; however: Package python3-numpydoc is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-cov; however: Package python3-pytest-cov is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bash-completion{a} blt{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgpg-error0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhdf5-310{a} libhdf5-hl-310{a} libicu72{a} libidn2-0{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-hotkeys{a} libjs-jquery-isonscreen{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-throttle-debounce{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap2{a} liblerc4{a} liblocale-gettext-perl{a} liblzf1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libnsl2{a} libopenjp2-7{a} libp11-kit0{a} libpipeline1{a} libpng16-16t64{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libsz2{a} libtasn1-6{a} libtcl8.6{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python-babel-localedata{a} python-matplotlib-data{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-attr{a} python3-autocommand{a} python3-babel{a} python3-brotli{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-contourpy{a} python3-coverage{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-defusedxml{a} python3-dev{a} python3-docutils{a} python3-fonttools{a} python3-fs{a} python3-h5py{a} python3-h5py-serial{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-markupsafe{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-numpydoc{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-pygments{a} python3-pyparsing{a} python3-pytest{a} python3-pytest-cov{a} python3-pytz{a} python3-requests{a} python3-roman{a} python3-scipy{a} python3-setuptools{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sympy{a} python3-tabulate{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-urllib3{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.12-tk{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libjson-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libsasl2-modules lynx publicsuffix python3-bottleneck python3-bs4 python3-cssselect python3-html5lib python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pooch python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 226 newly installed, 0 to remove and 0 not upgraded. Need to get 143 MB of archives. After unpacking 691 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 liblocale-gettext-perl arm64 1.07-7+b1 [15.2 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libpython3.13-minimal arm64 3.13.2-1 [853 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3.13-minimal arm64 3.13.2-1 [1997 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.13.1-2 [27.0 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 tzdata all 2025a-2 [259 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 libpython3.13-stdlib arm64 3.13.2-1 [1914 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 python3.13 arm64 3.13.2-1 [745 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.13.1-2 [9952 B] Get: 15 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.13.1-2 [28.0 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.9-1 [810 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.9-1 [1941 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 sgml-base all 1.31 [15.4 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 bash-completion all 1:2.16.0-7 [319 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 openssl arm64 3.4.1-1 [1390 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 ca-certificates all 20241223 [164 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-3 [92.0 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-3 [862 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [984 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.46-4 [276 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-2 [317 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-2 [386 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b4 [27.2 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libxft2 arm64 2.3.6-1+b4 [51.6 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+24 [217 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libxss1 arm64 1:1.2.3-1+b3 [17.1 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libtk8.6 arm64 8.6.16-1 [741 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7+b1 [538 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 blt arm64 2.5.3+dfsg-7+b1 [6344 B] Get: 58 http://deb.debian.org/debian trixie/main arm64 cython3 arm64 3.0.11+dfsg-2 [2726 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-3 [539 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 65 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.1 [920 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 80 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 75.6.0-1 [720 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20250108 [113 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 xml-core all 0.19 [20.1 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 fonts-lyx all 2.4.3-1 [190 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 help2man arm64 1.49.3+b1 [198 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libaec0 arm64 1.1.3-1+b1 [22.5 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.1-2 [104 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 96 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.12.1-2 [340 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.23-1+b1 [42.5 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 libexpat1-dev arm64 2.6.4-1 [143 kB] Get: 113 http://deb.debian.org/debian trixie/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB] Get: 114 http://deb.debian.org/debian trixie/main arm64 libgpg-error0 arm64 1.51-3 [78.5 kB] Get: 115 http://deb.debian.org/debian trixie/main arm64 libgcrypt20 arm64 1.11.0-7 [742 kB] Get: 116 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-16 [361 kB] Get: 117 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.83.3-2 [1421 kB] Get: 118 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 119 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 10.2.0-1 [443 kB] Get: 120 http://deb.debian.org/debian trixie/main arm64 libsz2 arm64 1.1.3-1+b1 [8044 B] Get: 121 http://deb.debian.org/debian trixie/main arm64 libhdf5-310 arm64 1.14.5+repack-3 [1155 kB] Get: 122 http://deb.debian.org/debian trixie/main arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [66.1 kB] Get: 123 http://deb.debian.org/debian trixie/main arm64 libimagequant0 arm64 2.18.0-1+b2 [34.6 kB] Get: 124 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 125 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 126 http://deb.debian.org/debian trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 127 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-hotkeys all 0.2.0-1 [12.6 kB] Get: 128 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-isonscreen all 1.2.0-1.1 [3196 B] Get: 129 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-metadata all 12-4 [6532 B] Get: 130 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [184 kB] Get: 131 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.2 kB] Get: 132 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 133 http://deb.debian.org/debian trixie/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 134 http://deb.debian.org/debian trixie/main arm64 libjs-sphinxdoc all 8.1.3-4 [30.4 kB] Get: 135 http://deb.debian.org/debian trixie/main arm64 libjson-perl all 4.10000-1 [87.5 kB] Get: 136 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.1-2 [1819 kB] Get: 137 http://deb.debian.org/debian trixie/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b2 [25.6 kB] Get: 138 http://deb.debian.org/debian trixie/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 139 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 140 http://deb.debian.org/debian trixie/main arm64 liblzf1 arm64 3.6-4+b3 [10.1 kB] Get: 141 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 142 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 143 http://deb.debian.org/debian trixie/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 144 http://deb.debian.org/debian trixie/main arm64 libopenjp2-7 arm64 2.5.3-1 [189 kB] Get: 145 http://deb.debian.org/debian trixie/main arm64 libpython3.13 arm64 3.13.2-1 [1970 kB] Get: 146 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 147 http://deb.debian.org/debian trixie/main arm64 libpython3.13-dev arm64 3.13.2-1 [4678 kB] Get: 148 http://deb.debian.org/debian trixie/main arm64 libpython3-dev arm64 3.13.1-2 [10.2 kB] Get: 149 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.9-1 [1909 kB] Get: 150 http://deb.debian.org/debian trixie/main arm64 libpython3.12t64 arm64 3.12.9-1 [1986 kB] Get: 151 http://deb.debian.org/debian trixie/main arm64 libpython3.12-dev arm64 3.12.9-1 [4796 kB] Get: 152 http://deb.debian.org/debian trixie/main arm64 libpython3-all-dev arm64 3.13.1-2 [1072 B] Get: 153 http://deb.debian.org/debian trixie/main arm64 libqhull-r8.0 arm64 2020.2-6+b2 [229 kB] Get: 154 http://deb.debian.org/debian trixie/main arm64 libraqm0 arm64 0.10.2-1 [13.6 kB] Get: 155 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 156 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 157 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 158 http://deb.debian.org/debian trixie/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [113 kB] Get: 159 http://deb.debian.org/debian trixie/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB] Get: 160 http://deb.debian.org/debian trixie/main arm64 libxslt1.1 arm64 1.1.35-1.1+b1 [222 kB] Get: 161 http://deb.debian.org/debian trixie/main arm64 python-babel-localedata all 2.17.0-1 [6050 kB] Get: 162 http://deb.debian.org/debian trixie/main arm64 python-matplotlib-data all 3.8.3-3 [2731 kB] Get: 163 http://deb.debian.org/debian trixie/main arm64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 164 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.9-1 [681 kB] Get: 165 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.13.1-2 [1056 B] Get: 166 http://deb.debian.org/debian trixie/main arm64 python3.13-dev arm64 3.13.2-1 [505 kB] Get: 167 http://deb.debian.org/debian trixie/main arm64 python3-dev arm64 3.13.1-2 [26.1 kB] Get: 168 http://deb.debian.org/debian trixie/main arm64 python3.12-dev arm64 3.12.9-1 [505 kB] Get: 169 http://deb.debian.org/debian trixie/main arm64 python3-all-dev arm64 3.13.1-2 [1076 B] Get: 170 http://deb.debian.org/debian trixie/main arm64 python3-attr all 25.1.0-1 [68.7 kB] Get: 171 http://deb.debian.org/debian trixie/main arm64 python3-babel all 2.17.0-1 [117 kB] Get: 172 http://deb.debian.org/debian trixie/main arm64 python3-brotli arm64 1.1.0-2+b6 [306 kB] Get: 173 http://deb.debian.org/debian trixie/main arm64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 174 http://deb.debian.org/debian trixie/main arm64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 175 http://deb.debian.org/debian trixie/main arm64 python3-charset-normalizer arm64 3.4.1-1 [132 kB] Get: 176 http://deb.debian.org/debian trixie/main arm64 python3-click all 8.1.8-1 [95.2 kB] Get: 177 http://deb.debian.org/debian trixie/main arm64 python3-numpy arm64 1:1.26.4+ds-13 [3815 kB] Get: 178 http://deb.debian.org/debian trixie/main arm64 python3-contourpy arm64 1.3.1-1 [237 kB] Get: 179 http://deb.debian.org/debian trixie/main arm64 python3-coverage arm64 7.6.0+dfsg1-2+b1 [177 kB] Get: 180 http://deb.debian.org/debian trixie/main arm64 python3-cycler all 0.12.1-1 [9496 B] Get: 181 http://deb.debian.org/debian trixie/main arm64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 182 http://deb.debian.org/debian trixie/main arm64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 183 http://deb.debian.org/debian trixie/main arm64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get: 184 http://deb.debian.org/debian trixie/main arm64 python3-roman all 5.0-1 [10.6 kB] Get: 185 http://deb.debian.org/debian trixie/main arm64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get: 186 http://deb.debian.org/debian trixie/main arm64 python3-pytz all 2025.1-3 [150 kB] Get: 187 http://deb.debian.org/debian trixie/main arm64 python3-tz all 2025.1-3 [4004 B] Get: 188 http://deb.debian.org/debian trixie/main arm64 python3-platformdirs all 4.3.6-1 [16.6 kB] Get: 189 http://deb.debian.org/debian trixie/main arm64 python3-fs all 2.4.16-6 [95.1 kB] Get: 190 http://deb.debian.org/debian trixie/main arm64 python3-lxml arm64 5.3.1-1 [1428 kB] Get: 191 http://deb.debian.org/debian trixie/main arm64 python3-lz4 arm64 4.4.0+dfsg-1 [25.6 kB] Get: 192 http://deb.debian.org/debian trixie/main arm64 python3-scipy arm64 1.14.1-4 [18.5 MB] Get: 193 http://deb.debian.org/debian trixie/main arm64 python3-mpmath all 1.3.0-1 [419 kB] Get: 194 http://deb.debian.org/debian trixie/main arm64 python3-sympy all 1.13.3-1 [4147 kB] Get: 195 http://deb.debian.org/debian trixie/main arm64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB] Get: 196 http://deb.debian.org/debian trixie/main arm64 unicode-data all 15.1.0-1 [8547 kB] Get: 197 http://deb.debian.org/debian trixie/main arm64 python3-fonttools arm64 4.55.3-2 [1501 kB] Get: 198 http://deb.debian.org/debian trixie/main arm64 python3-h5py-serial arm64 3.12.1-1+b2 [1246 kB] Get: 199 http://deb.debian.org/debian trixie/main arm64 python3-h5py all 3.12.1-1 [15.0 kB] Get: 200 http://deb.debian.org/debian trixie/main arm64 python3-idna all 3.10-1 [42.0 kB] Get: 201 http://deb.debian.org/debian trixie/main arm64 python3-imagesize all 1.4.1-1 [6688 B] Get: 202 http://deb.debian.org/debian trixie/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 203 http://deb.debian.org/debian trixie/main arm64 python3-markupsafe arm64 2.1.5-1+b3 [14.0 kB] Get: 204 http://deb.debian.org/debian trixie/main arm64 python3-jinja2 all 3.1.5-2 [107 kB] Get: 205 http://deb.debian.org/debian trixie/main arm64 python3-kiwisolver arm64 1.4.7-3 [71.5 kB] Get: 206 http://deb.debian.org/debian trixie/main arm64 python3-pil arm64 11.1.0-5 [514 kB] Get: 207 http://deb.debian.org/debian trixie/main arm64 python3.12-tk arm64 3.12.9-1 [111 kB] Get: 208 http://deb.debian.org/debian trixie/main arm64 python3.13-tk arm64 3.13.2-1 [102 kB] Get: 209 http://deb.debian.org/debian trixie/main arm64 python3-tk arm64 3.13.1-1 [9464 B] Get: 210 http://deb.debian.org/debian trixie/main arm64 python3-pil.imagetk arm64 11.1.0-5 [81.6 kB] Get: 211 http://deb.debian.org/debian trixie/main arm64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 212 http://deb.debian.org/debian trixie/main arm64 python3-packaging all 24.2-1 [55.3 kB] Get: 213 http://deb.debian.org/debian trixie/main arm64 python3-matplotlib arm64 3.8.3-3+b2 [5583 kB] Get: 214 http://deb.debian.org/debian trixie/main arm64 sphinx-common all 8.1.3-4 [616 kB] Get: 215 http://deb.debian.org/debian trixie/main arm64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 216 http://deb.debian.org/debian trixie/main arm64 python3-urllib3 all 2.3.0-1 [114 kB] Get: 217 http://deb.debian.org/debian trixie/main arm64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 218 http://deb.debian.org/debian trixie/main arm64 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 219 http://deb.debian.org/debian trixie/main arm64 python3-sphinx all 8.1.3-4 [468 kB] Get: 220 http://deb.debian.org/debian trixie/main arm64 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 221 http://deb.debian.org/debian trixie/main arm64 python3-numpydoc all 1.8.0-1 [51.4 kB] Get: 222 http://deb.debian.org/debian trixie/main arm64 python3-pandas-lib arm64 2.2.3+dfsg-8 [6029 kB] Get: 223 http://deb.debian.org/debian trixie/main arm64 python3-pandas all 2.2.3+dfsg-8 [3097 kB] Get: 224 http://deb.debian.org/debian trixie/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 225 http://deb.debian.org/debian trixie/main arm64 python3-pytest all 8.3.4-1 [250 kB] Get: 226 http://deb.debian.org/debian trixie/main arm64 python3-pytest-cov all 5.0.0-1 [26.8 kB] Fetched 143 MB in 1s (218 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19922 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-7+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.2-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.2-1) ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_arm64.deb ... Unpacking python3.13 (3.13.2-1) ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../128-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package libopenjp2-7:arm64. Preparing to unpack .../129-libopenjp2-7_2.5.3-1_arm64.deb ... Unpacking libopenjp2-7:arm64 (2.5.3-1) ... Selecting previously unselected package libpython3.13:arm64. Preparing to unpack .../130-libpython3.13_3.13.2-1_arm64.deb ... Unpacking libpython3.13:arm64 (3.13.2-1) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../131-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-biom-format-2.1.16/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-biom-format_2.1.16-1_source.changes dpkg-buildpackage: info: source package python-biom-format dpkg-buildpackage: info: source version 2.1.16-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with bash-completion,sphinxdoc --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p "3.12 3.13" I: pybuild base:311: python3.12 setup.py clean /build/reproducible-path/python-biom-format-2.1.16/setup.py:15: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as TestCommand /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-biom-format-2.1.16/biom/_filter.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-biom-format-2.1.16/biom/_subsample.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-biom-format-2.1.16/biom/_transform.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling biom/_filter.pyx because it changed. Compiling biom/_transform.pyx because it changed. Compiling biom/_subsample.pyx because it changed. [1/3] Cythonizing biom/_filter.pyx [2/3] Cythonizing biom/_subsample.pyx [3/3] Cythonizing biom/_transform.pyx /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running clean removing '/build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.13 setup.py clean /build/reproducible-path/python-biom-format-2.1.16/setup.py:15: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as TestCommand /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running clean removing '/build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-biom-format.substvars debian/python-biom-format-doc.substvars ./biom/_filter.c ./biom/_subsample.c ./biom/_transform.c debian/files rm -fr -- debian/python3-biom-format/ debian/tmp/ debian/python-biom-format-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --with bash-completion,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p "3.12 3.13" I: pybuild base:311: python3.12 setup.py config /build/reproducible-path/python-biom-format-2.1.16/setup.py:15: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as TestCommand /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-biom-format-2.1.16/biom/_filter.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-biom-format-2.1.16/biom/_subsample.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-biom-format-2.1.16/biom/_transform.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling biom/_filter.pyx because it changed. Compiling biom/_transform.pyx because it changed. Compiling biom/_subsample.pyx because it changed. [1/3] Cythonizing biom/_filter.pyx [2/3] Cythonizing biom/_subsample.pyx [3/3] Cythonizing biom/_transform.pyx /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running config I: pybuild base:311: python3.13 setup.py config /build/reproducible-path/python-biom-format-2.1.16/setup.py:15: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as TestCommand /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/python-biom-format-2.1.16' # arch USE_CYTHON=true dh_auto_build pybuild --build -i python{version} -p "3.12 3.13" I: pybuild base:311: /usr/bin/python3.12 setup.py build /build/reproducible-path/python-biom-format-2.1.16/setup.py:15: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as TestCommand /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running build running build_py creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom copying biom/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom copying biom/util.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom copying biom/table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom copying biom/parse.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom copying biom/exception.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom copying biom/err.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests copying biom/tests/test_util.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests copying biom/tests/test_table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests copying biom/tests/test_parse.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests copying biom/tests/test_err.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests copying biom/tests/long_lines.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests copying biom/tests/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/util.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/uc_processor.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/table_validator.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/table_summarizer.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/table_subsetter.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/table_normalizer.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/table_ids.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/table_head.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/table_converter.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/metadata_exporter.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/metadata_adder.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/installation_informer.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_validate_table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_uc_processor.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_table_normalizer.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_table_converter.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_summarize_table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_subset_table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_show_install_info.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_add_metadata.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli running egg_info creating biom_format.egg-info writing biom_format.egg-info/PKG-INFO writing dependency_links to biom_format.egg-info/dependency_links.txt writing entry points to biom_format.egg-info/entry_points.txt writing requirements to biom_format.egg-info/requires.txt writing top-level names to biom_format.egg-info/top_level.txt writing manifest file 'biom_format.egg-info/SOURCES.txt' dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'support_files' warning: no directories found matching 'tests/test_data' no previously-included directories found matching 'docs/_build' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution adding license file 'COPYING.txt' writing manifest file 'biom_format.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.assets' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.assets' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.assets' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.assets' to be distributed and are already explicitly excluding 'biom.assets' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.tests.bench_tables' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.bench_tables' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.tests.bench_tables' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.tests.bench_tables' to be distributed and are already explicitly excluding 'biom.tests.bench_tables' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.tests.test_cli.test_data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.test_cli.test_data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.tests.test_cli.test_data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.tests.test_cli.test_data' to be distributed and are already explicitly excluding 'biom.tests.test_cli.test_data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying biom/_filter.pyx -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom copying biom/_subsample.pyx -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom copying biom/_transform.pyx -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/assets copying biom/assets/exercise_api.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/assets copying biom/assets/exercise_cli.sh -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/assets creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/test_data/bad_table.txt -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/bad_table.txt.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/edgecase_issue_952.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/empty.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/no-contents.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.json -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.json.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test_grp_metadata.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/test.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/test.json -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data running build_ext building 'biom._filter' extension creating build/temp.linux-aarch64-cpython-312/biom aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c biom/_filter.c -o build/temp.linux-aarch64-cpython-312/biom/_filter.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from biom/_filter.c:1249: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/biom/_filter.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/_filter.cpython-312-aarch64-linux-gnu.so building 'biom._transform' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c biom/_transform.c -o build/temp.linux-aarch64-cpython-312/biom/_transform.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from biom/_transform.c:1249: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/biom/_transform.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/_transform.cpython-312-aarch64-linux-gnu.so building 'biom._subsample' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c biom/_subsample.c -o build/temp.linux-aarch64-cpython-312/biom/_subsample.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from biom/_subsample.c:1249: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/biom/_subsample.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/_subsample.cpython-312-aarch64-linux-gnu.so I: pybuild base:311: /usr/bin/python3 setup.py build /build/reproducible-path/python-biom-format-2.1.16/setup.py:15: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as TestCommand /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running build running build_py creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom copying biom/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom copying biom/util.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom copying biom/table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom copying biom/parse.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom copying biom/exception.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom copying biom/err.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests copying biom/tests/test_util.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests copying biom/tests/test_table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests copying biom/tests/test_parse.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests copying biom/tests/test_err.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests copying biom/tests/long_lines.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests copying biom/tests/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/util.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/uc_processor.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/table_validator.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/table_summarizer.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/table_subsetter.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/table_normalizer.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/table_ids.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/table_head.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/table_converter.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/metadata_exporter.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/metadata_adder.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/installation_informer.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_validate_table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_uc_processor.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_table_normalizer.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_table_converter.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_summarize_table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_subset_table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_show_install_info.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_add_metadata.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli running egg_info writing biom_format.egg-info/PKG-INFO writing dependency_links to biom_format.egg-info/dependency_links.txt writing entry points to biom_format.egg-info/entry_points.txt writing requirements to biom_format.egg-info/requires.txt writing top-level names to biom_format.egg-info/top_level.txt dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'support_files' warning: no directories found matching 'tests/test_data' no previously-included directories found matching 'docs/_build' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution adding license file 'COPYING.txt' writing manifest file 'biom_format.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.assets' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.assets' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.assets' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.assets' to be distributed and are already explicitly excluding 'biom.assets' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.tests.bench_tables' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.bench_tables' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.tests.bench_tables' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.tests.bench_tables' to be distributed and are already explicitly excluding 'biom.tests.bench_tables' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.tests.test_cli.test_data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.test_cli.test_data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.tests.test_cli.test_data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.tests.test_cli.test_data' to be distributed and are already explicitly excluding 'biom.tests.test_cli.test_data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying biom/_filter.pyx -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom copying biom/_subsample.pyx -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom copying biom/_transform.pyx -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/assets copying biom/assets/exercise_api.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/assets copying biom/assets/exercise_cli.sh -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/assets creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/test_data/bad_table.txt -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/bad_table.txt.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/edgecase_issue_952.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/empty.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/no-contents.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.json -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.json.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test_grp_metadata.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/test.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/test.json -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data running build_ext building 'biom._filter' extension creating build/temp.linux-aarch64-cpython-313/biom aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c biom/_filter.c -o build/temp.linux-aarch64-cpython-313/biom/_filter.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from biom/_filter.c:1249: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/biom/_filter.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_filter.cpython-313-aarch64-linux-gnu.so building 'biom._transform' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c biom/_transform.c -o build/temp.linux-aarch64-cpython-313/biom/_transform.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from biom/_transform.c:1249: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/biom/_transform.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_transform.cpython-313-aarch64-linux-gnu.so building 'biom._subsample' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c biom/_subsample.c -o build/temp.linux-aarch64-cpython-313/biom/_subsample.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from biom/_subsample.c:1249: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/biom/_subsample.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_subsample.cpython-313-aarch64-linux-gnu.so # indep: PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b html doc build/html Running Sphinx v8.1.3 loading translations [en]... done making output directory... done Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. [autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst WARNING: Failed to import biom.table. Possible hints: * ModuleNotFoundError: No module named 'biom._filter' * KeyError: 'biom' WARNING: Failed to import biom. Possible hints: * ModuleNotFoundError: No module named 'biom._filter' * KeyError: 'biom' building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 12 source files that are out of date updating environment: [new config] 12 added, 0 changed, 0 removed reading sources... [ 8%] BIOM_LICENSE reading sources... [ 17%] documentation/adding_metadata reading sources... [ 25%] documentation/biom_conversion reading sources... [ 33%] documentation/biom_format reading sources... [ 42%] documentation/format_versions/biom-1.0 reading sources... [ 50%] documentation/format_versions/biom-2.0 reading sources... [ 58%] documentation/format_versions/biom-2.1 reading sources... [ 67%] documentation/index reading sources... [ 75%] documentation/quick_usage_examples reading sources... [ 83%] documentation/summarizing_biom_tables reading sources... [ 92%] documentation/table_objects reading sources... [100%] index WARNING: autodoc: failed to import module 'biom'; the following exception was raised: No module named 'biom._filter' [autodoc.import_object] WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised: No module named 'biom._filter' [autodoc.import_object] looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying static files... Writing evaluated template result to /build/reproducible-path/python-biom-format-2.1.16/build/html/_static/language_data.js Writing evaluated template result to /build/reproducible-path/python-biom-format-2.1.16/build/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/python-biom-format-2.1.16/build/html/_static/basic.css Writing evaluated template result to /build/reproducible-path/python-biom-format-2.1.16/build/html/_static/haiku.css copying static files: done copying extra files... copying extra files: done copying assets: done writing output... [ 8%] BIOM_LICENSE writing output... [ 17%] documentation/adding_metadata writing output... [ 25%] documentation/biom_conversion writing output... [ 33%] documentation/biom_format writing output... [ 42%] documentation/format_versions/biom-1.0 writing output... [ 50%] documentation/format_versions/biom-2.0 writing output... [ 58%] documentation/format_versions/biom-2.1 writing output... [ 67%] documentation/index writing output... [ 75%] documentation/quick_usage_examples writing output... [ 83%] documentation/summarizing_biom_tables writing output... [ 92%] documentation/table_objects writing output... [100%] index /build/reproducible-path/python-biom-format-2.1.16/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated [toc.no_title] /build/reproducible-path/python-biom-format-2.1.16/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated [toc.no_title] /build/reproducible-path/python-biom-format-2.1.16/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated [toc.no_title] /build/reproducible-path/python-biom-format-2.1.16/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated [toc.no_title] generating indices... done writing additional pages... search done copying images... [100%] _static/biom-format.png dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 8 warnings. The HTML pages are in build/html. PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b man doc build/man Running Sphinx v8.1.3 loading translations [en]... done making output directory... done Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. [autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst WARNING: Failed to import biom.table. Possible hints: * KeyError: 'biom' * ModuleNotFoundError: No module named 'biom._filter' WARNING: Failed to import biom. Possible hints: * KeyError: 'biom' * ModuleNotFoundError: No module named 'biom._filter' building [mo]: targets for 0 po files that are out of date writing output... building [man]: all manpages updating environment: [new config] 12 added, 0 changed, 0 removed reading sources... [ 8%] BIOM_LICENSE reading sources... [ 17%] documentation/adding_metadata reading sources... [ 25%] documentation/biom_conversion reading sources... [ 33%] documentation/biom_format reading sources... [ 42%] documentation/format_versions/biom-1.0 reading sources... [ 50%] documentation/format_versions/biom-2.0 reading sources... [ 58%] documentation/format_versions/biom-2.1 reading sources... [ 67%] documentation/index reading sources... [ 75%] documentation/quick_usage_examples reading sources... [ 83%] documentation/summarizing_biom_tables reading sources... [ 92%] documentation/table_objects reading sources... [100%] index WARNING: autodoc: failed to import module 'biom'; the following exception was raised: No module named 'biom._filter' [autodoc.import_object] WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised: No module named 'biom._filter' [autodoc.import_object] looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying assets: done writing... biom.1 { documentation/index documentation/biom_format documentation/format_versions/biom-1.0 documentation/format_versions/biom-2.0 documentation/format_versions/biom-2.1 documentation/quick_usage_examples documentation/table_objects documentation/biom_conversion documentation/adding_metadata documentation/summarizing_biom_tables BIOM_LICENSE } done build succeeded, 4 warnings. The manual pages are in build/man. make[1]: Leaving directory '/build/reproducible-path/python-biom-format-2.1.16' dh_auto_test -O--buildsystem=pybuild pybuild --test --test-pytest -i python{version} -p "3.12 3.13" I: pybuild pybuild:308: cp -r /build/reproducible-path/python-biom-format-2.1.16/examples /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build I: pybuild base:311: cd /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build; python3.12 -m pytest ============================= test session starts ============================== platform linux -- Python 3.12.9, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build configfile: pytest.ini testpaths: biom plugins: cov-5.0.0, typeguard-4.4.1 collected 384 items biom/tests/test_cli/test_add_metadata.py .... [ 1%] biom/tests/test_cli/test_show_install_info.py . [ 1%] biom/tests/test_cli/test_subset_table.py ..... [ 2%] biom/tests/test_cli/test_summarize_table.py .. [ 3%] biom/tests/test_cli/test_table_converter.py ...... [ 4%] biom/tests/test_cli/test_table_normalizer.py . [ 4%] biom/tests/test_cli/test_uc_processor.py ...... [ 6%] biom/tests/test_cli/test_validate_table.py ....................... [ 12%] biom/tests/test_err.py ..................... [ 17%] biom/tests/test_parse.py ........................... [ 25%] biom/tests/test_table.py ............................................... [ 37%] ..ssss.................................................................. [ 55%] ......sss............................................................... [ 74%] ........................................................................ [ 93%] ..... [ 94%] biom/tests/test_util.py .................... [100%] =============================== warnings summary =============================== biom/tests/test_table.py::SupportTests::test_remove_empty_both biom/tests/test_table.py::SupportTests::test_remove_empty_obs biom/tests/test_table.py::SupportTests::test_remove_empty_sample /usr/lib/python3/dist-packages/scipy/sparse/_index.py:151: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil and dok are more efficient. self._set_arrayXarray(i, j, x) biom/tests/test_table.py::TableTests::test_nnz_issue_727 /usr/lib/python3/dist-packages/scipy/sparse/_index.py:108: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil and dok are more efficient. self._set_intXint(row, col, x.flat[0]) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================== 377 passed, 7 skipped, 4 warnings in 4.40s ================== I: pybuild pybuild:308: cp -r /build/reproducible-path/python-biom-format-2.1.16/examples /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build I: pybuild base:311: cd /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build; python3.13 -m pytest ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build configfile: pytest.ini testpaths: biom plugins: cov-5.0.0, typeguard-4.4.1 collected 384 items biom/tests/test_cli/test_add_metadata.py .... [ 1%] biom/tests/test_cli/test_show_install_info.py . [ 1%] biom/tests/test_cli/test_subset_table.py ..... [ 2%] biom/tests/test_cli/test_summarize_table.py .. [ 3%] biom/tests/test_cli/test_table_converter.py ...... [ 4%] biom/tests/test_cli/test_table_normalizer.py . [ 4%] biom/tests/test_cli/test_uc_processor.py ...... [ 6%] biom/tests/test_cli/test_validate_table.py ....................... [ 12%] biom/tests/test_err.py ..................... [ 17%] biom/tests/test_parse.py ........................... [ 25%] biom/tests/test_table.py ............................................... [ 37%] ..ssss.................................................................. [ 55%] ......sss............................................................... [ 74%] ........................................................................ [ 93%] ..... [ 94%] biom/tests/test_util.py .................... [100%] =============================== warnings summary =============================== biom/tests/test_table.py::SupportTests::test_remove_empty_both biom/tests/test_table.py::SupportTests::test_remove_empty_obs biom/tests/test_table.py::SupportTests::test_remove_empty_sample /usr/lib/python3/dist-packages/scipy/sparse/_index.py:151: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil and dok are more efficient. self._set_arrayXarray(i, j, x) biom/tests/test_table.py::TableTests::test_nnz_issue_727 /usr/lib/python3/dist-packages/scipy/sparse/_index.py:108: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil and dok are more efficient. self._set_intXint(row, col, x.flat[0]) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================== 377 passed, 7 skipped, 4 warnings in 4.11s ================== rm -fr -- /tmp/dh-xdg-rundir-8cPb4qtA create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-biom-format.substvars debian/python-biom-format-doc.substvars rm -fr -- debian/.debhelper/generated/python3-biom-format/ debian/python3-biom-format/ debian/tmp/ debian/.debhelper/generated/python-biom-format-doc/ debian/python-biom-format-doc/ rm -f debian/python-biom-format-doc.debhelper.log debian/python3-biom-format.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/python-biom-format-2.1.16' dh_auto_install install -m0755 -d /build/reproducible-path/python-biom-format-2.1.16/debian/tmp pybuild --install -i python{version} -p "3.12 3.13" --dest-dir=/build/reproducible-path/python-biom-format-2.1.16/debian/tmp I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format /build/reproducible-path/python-biom-format-2.1.16/setup.py:15: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as TestCommand /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing biom_format.egg-info/PKG-INFO writing dependency_links to biom_format.egg-info/dependency_links.txt writing entry points to biom_format.egg-info/entry_points.txt writing requirements to biom_format.egg-info/requires.txt writing top-level names to biom_format.egg-info/top_level.txt dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'support_files' warning: no directories found matching 'tests/test_data' no previously-included directories found matching 'docs/_build' warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution adding license file 'COPYING.txt' writing manifest file 'biom_format.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.assets' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.assets' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.assets' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.assets' to be distributed and are already explicitly excluding 'biom.assets' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.tests.bench_tables' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.bench_tables' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.tests.bench_tables' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.tests.bench_tables' to be distributed and are already explicitly excluding 'biom.tests.bench_tables' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.tests.test_cli.test_data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.test_cli.test_data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.tests.test_cli.test_data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.tests.test_cli.test_data' to be distributed and are already explicitly excluding 'biom.tests.test_cli.test_data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) running build_ext running install_lib creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/.pytest_cache creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/.pytest_cache/v creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/.pytest_cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/.pytest_cache/.gitignore -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/.pytest_cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/.pytest_cache/README.md -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/.pytest_cache creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/examples/sam_md.txt -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/examples/rich_sparse_otu_table_hdf5_group_metadata.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/examples/rich_sparse_otu_table_hdf5.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/examples/rich_sparse_otu_table.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/examples/obs_md.txt -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/examples/min_sparse_otu_table_hdf5.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/examples/min_sparse_otu_table.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/examples creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/__pycache__/parse.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/__pycache__/err.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/__pycache__/util.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/__pycache__/exception.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/__pycache__/table.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/_subsample.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/_transform.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/_filter.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/assets copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/assets/exercise_cli.sh -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/assets copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/assets/exercise_api.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/assets copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/_transform.pyx -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/_subsample.pyx -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/_filter.pyx -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/uc_processor.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/table_validator.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/table_ids.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/table_head.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/table_normalizer.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/table_subsetter.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/installation_informer.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/table_converter.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/metadata_exporter.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/util.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/metadata_adder.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/table_summarizer.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/installation_informer.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/metadata_adder.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/metadata_exporter.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/table_converter.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/table_head.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/table_ids.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/table_normalizer.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/table_subsetter.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/table_summarizer.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/table_validator.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/uc_processor.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/util.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/__pycache__/test_util.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/__pycache__/test_table.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/__pycache__/test_parse.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/__pycache__/test_err.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/__pycache__/long_lines.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/__pycache__ creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/test_validate_table.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/test_uc_processor.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/test_table_normalizer.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/test_table_converter.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/test_summarize_table.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/test_subset_table.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/test_show_install_info.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/test_add_metadata.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data/test.json -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data/test.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_add_metadata.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_show_install_info.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_subset_table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_summarize_table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_table_converter.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_table_normalizer.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_uc_processor.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_validate_table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/test_grp_metadata.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/test.json.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/test.json -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/test.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/no-contents.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/empty.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/edgecase_issue_952.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/bad_table.txt.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/bad_table.txt -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/long_lines.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_err.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_parse.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_util.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/err.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/exception.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/parse.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/util.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/assets/exercise_api.py to exercise_api.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/installation_informer.py to installation_informer.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/metadata_adder.py to metadata_adder.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/metadata_exporter.py to metadata_exporter.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/table_converter.py to table_converter.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/table_head.py to table_head.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/table_ids.py to table_ids.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/table_normalizer.py to table_normalizer.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/table_subsetter.py to table_subsetter.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/table_summarizer.py to table_summarizer.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/table_validator.py to table_validator.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/uc_processor.py to uc_processor.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/util.py to util.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_add_metadata.py to test_add_metadata.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_show_install_info.py to test_show_install_info.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_subset_table.py to test_subset_table.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_summarize_table.py to test_summarize_table.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_table_converter.py to test_table_converter.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_table_normalizer.py to test_table_normalizer.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_uc_processor.py to test_uc_processor.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_validate_table.py to test_validate_table.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/long_lines.py to long_lines.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_err.py to test_err.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_parse.py to test_parse.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_table.py to test_table.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_util.py to test_util.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/err.py to err.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/exception.py to exception.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/parse.py to parse.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/table.py to table.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/util.py to util.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/__init__.py to __init__.cpython-312.pyc running install_egg_info Copying biom_format.egg-info to /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom_format-2.1.16.egg-info Skipping SOURCES.txt running install_scripts Installing biom script to /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/bin I: pybuild pybuild:334: dh_numpy3 mv debian/python3-biom-format.substvars.new debian/python3-biom-format.substvars mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format /build/reproducible-path/python-biom-format-2.1.16/setup.py:15: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as TestCommand /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing biom_format.egg-info/PKG-INFO writing dependency_links to biom_format.egg-info/dependency_links.txt writing entry points to biom_format.egg-info/entry_points.txt writing requirements to biom_format.egg-info/requires.txt writing top-level names to biom_format.egg-info/top_level.txt dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'support_files' warning: no directories found matching 'tests/test_data' no previously-included directories found matching 'docs/_build' warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution adding license file 'COPYING.txt' writing manifest file 'biom_format.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.assets' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.assets' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.assets' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.assets' to be distributed and are already explicitly excluding 'biom.assets' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.tests.bench_tables' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.bench_tables' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.tests.bench_tables' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.tests.bench_tables' to be distributed and are already explicitly excluding 'biom.tests.bench_tables' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.tests.test_cli.test_data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.test_cli.test_data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.tests.test_cli.test_data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.tests.test_cli.test_data' to be distributed and are already explicitly excluding 'biom.tests.test_cli.test_data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) running build_ext running install_lib creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache/v creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/.pytest_cache/.gitignore -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/.pytest_cache/README.md -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/sam_md.txt -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/rich_sparse_otu_table_hdf5_group_metadata.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/rich_sparse_otu_table_hdf5.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/rich_sparse_otu_table.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/obs_md.txt -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/min_sparse_otu_table_hdf5.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/min_sparse_otu_table.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__pycache__/parse.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__pycache__/err.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__pycache__/util.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__pycache__/exception.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__pycache__/table.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_subsample.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_transform.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_filter.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/assets copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/assets/exercise_cli.sh -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/assets copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/assets/exercise_api.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/assets copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_transform.pyx -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_subsample.pyx -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_filter.pyx -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/uc_processor.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_validator.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_ids.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_head.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_normalizer.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_subsetter.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/installation_informer.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_converter.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/metadata_exporter.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/util.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/metadata_adder.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_summarizer.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/installation_informer.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/metadata_adder.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/metadata_exporter.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_converter.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_head.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_ids.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_normalizer.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_subsetter.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_summarizer.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_validator.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/uc_processor.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/util.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__pycache__/test_util.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__pycache__/test_table.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__pycache__/test_parse.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__pycache__/test_err.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__pycache__/long_lines.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__ creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_validate_table.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_uc_processor.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_table_normalizer.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_table_converter.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_summarize_table.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_subset_table.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_show_install_info.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_add_metadata.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data/test.json -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data/test.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_add_metadata.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_show_install_info.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_subset_table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_summarize_table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_table_converter.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_table_normalizer.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_uc_processor.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_validate_table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/test_grp_metadata.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/test.json.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/test.json -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/test.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/no-contents.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/empty.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/edgecase_issue_952.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/bad_table.txt.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/bad_table.txt -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/long_lines.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_err.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_parse.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_util.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/err.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/exception.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/parse.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/util.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/assets/exercise_api.py to exercise_api.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/installation_informer.py to installation_informer.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/metadata_adder.py to metadata_adder.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/metadata_exporter.py to metadata_exporter.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_converter.py to table_converter.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_head.py to table_head.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_ids.py to table_ids.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_normalizer.py to table_normalizer.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_subsetter.py to table_subsetter.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_summarizer.py to table_summarizer.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_validator.py to table_validator.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/uc_processor.py to uc_processor.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/util.py to util.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_add_metadata.py to test_add_metadata.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_show_install_info.py to test_show_install_info.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_subset_table.py to test_subset_table.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_summarize_table.py to test_summarize_table.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_table_converter.py to test_table_converter.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_table_normalizer.py to test_table_normalizer.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_uc_processor.py to test_uc_processor.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_validate_table.py to test_validate_table.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/long_lines.py to long_lines.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_err.py to test_err.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_parse.py to test_parse.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_table.py to test_table.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_util.py to test_util.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/err.py to err.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/exception.py to exception.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/parse.py to parse.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/table.py to table.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/util.py to util.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__init__.py to __init__.cpython-313.pyc running install_egg_info Copying biom_format.egg-info to /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom_format-2.1.16.egg-info Skipping SOURCES.txt running install_scripts Installing biom script to /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/bin I: pybuild pybuild:334: dh_numpy3 mv debian/python3-biom-format.substvars.new debian/python3-biom-format.substvars find debian/python3-biom-format -name .coverage -delete make[1]: Leaving directory '/build/reproducible-path/python-biom-format-2.1.16' rm -f debian/python-biom-format-doc.debhelper.log debian/python3-biom-format.debhelper.log debian/rules override_dh_installdocs-indep make[1]: Entering directory '/build/reproducible-path/python-biom-format-2.1.16' dh_installdocs --indep dh_installdocs: warning: Cannot auto-detect main package for python-biom-format-doc. If the default is wrong, please use --doc-main-package install -m0755 -d debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc install -m0755 -d debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc cd './build/html/..' && find 'html' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/reproducible-path/python-biom-format-2.1.16/debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc chmod -R u\+rw,go=rX debian/python-biom-format-doc/usr/share/doc install -p -m0644 debian/copyright debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/copyright install -m0755 -d debian/python-biom-format-doc/usr/share/doc-base/ install -p -m0644 debian/python-biom-format-doc.doc-base debian/python-biom-format-doc/usr/share/doc-base/python-biom-format-doc.python-biom-format dh_sphinxdoc --indep ln -sf ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/sphinx_highlight.js ln -sf ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/doctools.js dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/copybutton.js ln -sf ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/searchtools.js ln -sf ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/language_data.js rm -rf debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/.doctrees rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/.buildinfo mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars make[1]: Leaving directory '/build/reproducible-path/python-biom-format-2.1.16' dh_installdocs -O--buildsystem=pybuild -Npython-biom-format-doc install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format cp --reflink=auto -a ./debian/README.test debian/python3-biom-format/usr/share/doc/python3-biom-format cp --reflink=auto -a ./debian/tests/run-unit-test debian/python3-biom-format/usr/share/doc/python3-biom-format chmod -R u\+rw,go=rX debian/python3-biom-format/usr/share/doc install -p -m0644 debian/copyright debian/python3-biom-format/usr/share/doc/python3-biom-format/copyright dh_sphinxdoc -O--buildsystem=pybuild dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/copybutton.js dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format install -p -m0644 debian/.debhelper/generated/python3-biom-format/dh_installchangelogs.dch.trimmed debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog.Debian install -p -m0644 ./ChangeLog.md debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog install -m0755 -d debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc install -p -m0644 debian/.debhelper/generated/python-biom-format-doc/dh_installchangelogs.dch.trimmed debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/changelog.Debian install -p -m0644 ./ChangeLog.md debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/changelog rm -f debian/python-biom-format-doc.debhelper.log debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/python-biom-format-2.1.16' dh_installexamples install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/min_sparse_otu_table.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/min_sparse_otu_table_hdf5.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/obs_md.txt debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/rich_sparse_otu_table.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/rich_sparse_otu_table_hdf5.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/rich_sparse_otu_table_hdf5_group_metadata.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/sam_md.txt debian/python3-biom-format/usr/share/doc/python3-biom-format/examples find debian -name "*.c" -delete find debian -name "*.pyx" -delete # move tests from Python3 package to examples package if [ ! -d biom/tests ] ; then \ mv `find debian/python*biom-format -name tests -type d` biom ; \ else \ find debian/python*biom-format -name tests -type d | xargs rm -rf ; \ fi make[1]: Leaving directory '/build/reproducible-path/python-biom-format-2.1.16' dh_installman -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/usr/share/man/man1/ install -p -m0644 ./debian/biom.1 debian/python3-biom-format/usr/share/man/man1/biom.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-biom-format/usr/share/man/man1/biom.1 mv debian/python3-biom-format/usr/share/man/man1/biom.1.dh-new debian/python3-biom-format/usr/share/man/man1/biom.1 chmod 0644 -- debian/python3-biom-format/usr/share/man/man1/biom.1 dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:180: version: 6.20250108 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:183: supported Python versions: 3.12,3.13 (default=3.13) D: dh_python3 debhelper:166: skipping package python-biom-format-doc (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:174: source=python-biom-format, binary packages=['python3-biom-format'] D: dh_python3 dh_python3:205: processing package python3-biom-format... D: dh_python3 fs:50: moving files from debian/python3-biom-format/usr/lib/python3.12/dist-packages to debian/python3-biom-format/usr/lib/python3/dist-packages/ D: dh_python3 fs:50: moving files from debian/python3-biom-format/usr/lib/python3.13/dist-packages to debian/python3-biom-format/usr/lib/python3/dist-packages/ D: dh_python3 fs:249: removing dist-packages/.pytest_cache D: dh_python3 fs:338: package python3-biom-format details = {'requires.txt': {'debian/python3-biom-format/usr/lib/python3/dist-packages/biom_format-2.1.16.egg-info/requires.txt'}, 'egg-info': {'debian/python3-biom-format/usr/lib/python3/dist-packages/biom_format-2.1.16.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.12'), Version('3.13')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-biom-format D: dh_python3 pydist:175: trying to find dependency for click (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for h5py (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for numpy>=1.9.2 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for pandas>=0.20.0 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for scipy>=1.3.1 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 depends:253: D={'python3-pandas', 'python3-numpy', 'python3 (>= 3.12~)', 'python3:any', 'python3-scipy', 'python3-click', 'python3 (<< 3.14)', 'python3-h5py'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/sphinx_highlight.js ln -s ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/sphinx_highlight.js rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/doctools.js ln -s ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/doctools.js rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/searchtools.js ln -s ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/searchtools.js rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/language_data.js ln -s ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/language_data.js dh_strip_nondeterminism -O--buildsystem=pybuild Using 1716835050 as canonical time Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/plus.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/minus.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/bullet_orange.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/file.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/biom-format.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/bg-page.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/alert_warning_32.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_images/biom-format.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/alert_info_32.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=pybuild cd debian/python3-biom-format cd debian/python-biom-format-doc chmod a-x usr/share/doc/python-biom-format-doc/changelog usr/share/doc/python-biom-format-doc/changelog.Debian chmod a-x usr/share/doc/python3-biom-format/changelog usr/share/doc/python3-biom-format/changelog.Debian usr/share/man/man1/biom.1 gzip -9nf usr/share/doc/python-biom-format-doc/changelog usr/share/doc/python-biom-format-doc/changelog.Debian gzip -9nf usr/share/doc/python3-biom-format/changelog usr/share/doc/python3-biom-format/changelog.Debian usr/share/man/man1/biom.1 cd '/build/reproducible-path/python-biom-format-2.1.16' cd '/build/reproducible-path/python-biom-format-2.1.16' rm -f debian/python-biom-format-doc.debhelper.log debian/python3-biom-format.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/python-biom-format-2.1.16' dh_fixperms find debian/python3-biom-format ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-biom-format-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-biom-format-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/python-biom-format-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biom-format/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biom-format/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biom-format/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python-biom-format-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-biom-format/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biom-format-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biom-format -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biom-format/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/python3-biom-format/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian -name exercise_cli.sh -exec chmod +x \{\} \; make[1]: Leaving directory '/build/reproducible-path/python-biom-format-2.1.16' dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/usr/lib/debug/.dwz/aarch64-linux-gnu dwz -mdebian/python3-biom-format/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-biom-format.debug -M/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-biom-format.debug -- debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-312-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-313-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-312-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-313-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-312-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-313-aarch64-linux-gnu.so objcopy --compress-debug-sections debian/python3-biom-format/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-biom-format.debug chmod 0644 -- debian/python3-biom-format/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-biom-format.debug dh_strip -a -O--buildsystem=pybuild install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/48 objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/48/c92d283bb34db5e8c04dfe5632db28af9e103c.debug chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/48/c92d283bb34db5e8c04dfe5632db28af9e103c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/48/c92d283bb34db5e8c04dfe5632db28af9e103c.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/2f objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/2f/2aaae1dca22db0c7a63ff2fdb55e5fcaf76ca0.debug chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/2f/2aaae1dca22db0c7a63ff2fdb55e5fcaf76ca0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-313-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/2f/2aaae1dca22db0c7a63ff2fdb55e5fcaf76ca0.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-313-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/15 objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/15/ae4f68d566d3231d2829af358485d30f0235be.debug chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/15/ae4f68d566d3231d2829af358485d30f0235be.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/15/ae4f68d566d3231d2829af358485d30f0235be.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/18 objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/18/77bdee58e5b42e266699ddf9029b3bab1d7a21.debug chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/18/77bdee58e5b42e266699ddf9029b3bab1d7a21.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-313-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/18/77bdee58e5b42e266699ddf9029b3bab1d7a21.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-313-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/08 objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/08/cb274655789d7259a5701e936d9bff6334f32b.debug chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/08/cb274655789d7259a5701e936d9bff6334f32b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/08/cb274655789d7259a5701e936d9bff6334f32b.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/d3 objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/d3/820f286439385d9a6a038ad2ecfc44140dda69.debug chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/d3/820f286439385d9a6a038ad2ecfc44140dda69.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-313-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/d3/820f286439385d9a6a038ad2ecfc44140dda69.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-313-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-biom-format/usr/lib/debug/.dwz/aarch64-linux-gnu debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-biom-format/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-biom-format/usr/lib/debug install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/share/doc ln -s python3-biom-format debian/.debhelper/python3-biom-format/dbgsym-root/usr/share/doc/python3-biom-format-dbgsym install -m0755 -d debian/.debhelper/python3-biom-format dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/python3-biom-format/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/DEBIAN dpkg-shlibdeps -Tdebian/python3-biom-format.substvars debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-312-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-313-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-312-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-313-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-312-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-313-aarch64-linux-gnu.so dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-biom-format/DEBIAN/postinst cat debian/python3-biom-format.postinst.debhelper >> debian/python3-biom-format/DEBIAN/postinst chmod 0755 -- debian/python3-biom-format/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-biom-format/DEBIAN/prerm cat debian/python3-biom-format.prerm.debhelper >> debian/python3-biom-format/DEBIAN/prerm chmod 0755 -- debian/python3-biom-format/DEBIAN/prerm install -m0755 -d debian/python-biom-format-doc/DEBIAN dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/DEBIAN echo misc:Depends= >> debian/python3-biom-format.substvars echo misc:Pre-Depends= >> debian/python3-biom-format.substvars install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-biom-format -ldebian/changelog -Tdebian/python3-biom-format.substvars -cdebian/control -Pdebian/.debhelper/python3-biom-format/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-biom-format-dbgsym "-DDepends=python3-biom-format (= \${binary:Version})" "-DDescription=debug symbols for python3-biom-format" "-DBuild-Ids=08cb274655789d7259a5701e936d9bff6334f32b 15ae4f68d566d3231d2829af358485d30f0235be 1877bdee58e5b42e266699ddf9029b3bab1d7a21 2f2aaae1dca22db0c7a63ff2fdb55e5fcaf76ca0 48c92d283bb34db5e8c04dfe5632db28af9e103c d3820f286439385d9a6a038ad2ecfc44140dda69" -DSection=debug -UMulti-Arch -UReplaces -UBreaks install -m0755 -d debian/python-biom-format-doc/DEBIAN echo misc:Depends= >> debian/python-biom-format-doc.substvars echo misc:Pre-Depends= >> debian/python-biom-format-doc.substvars dpkg-gencontrol -ppython-biom-format-doc -ldebian/changelog -Tdebian/python-biom-format-doc.substvars -cdebian/control -Pdebian/python-biom-format-doc dpkg-gencontrol: warning: package python-biom-format-doc: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package python-biom-format-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined chmod 0644 -- debian/python-biom-format-doc/DEBIAN/control chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-biom-format -ldebian/changelog -Tdebian/python3-biom-format.substvars -cdebian/control -Pdebian/python3-biom-format chmod 0644 -- debian/python3-biom-format/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/DEBIAN install -m0755 -d debian/python-biom-format-doc/DEBIAN cd debian/python-biom-format-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python3-biom-format >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python-biom-format-doc/DEBIAN/md5sums chmod 0644 -- debian/python3-biom-format/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN cd debian/.debhelper/python3-biom-format/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-biom-format .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-biom-format/dbgsym-root .. dpkg-deb --root-owner-group --build debian/python-biom-format-doc .. dpkg-deb: building package 'python3-biom-format' in '../python3-biom-format_2.1.16-1_arm64.deb'. dpkg-deb: building package 'python3-biom-format-dbgsym' in '../python3-biom-format-dbgsym_2.1.16-1_arm64.deb'. dpkg-deb: building package 'python-biom-format-doc' in '../python-biom-format-doc_2.1.16-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-biom-format_2.1.16-1_arm64.buildinfo dpkg-genchanges --build=binary -O../python-biom-format_2.1.16-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3219725 and its subdirectories I: Current time: Fri Mar 27 08:01:28 -12 2026 I: pbuilder-time-stamp: 1774641688 Fri Mar 27 20:01:28 UTC 2026 I: Signing ./b1/python-biom-format_2.1.16-1_arm64.buildinfo as python-biom-format_2.1.16-1_arm64.buildinfo.asc Fri Mar 27 20:01:28 UTC 2026 I: Signed ./b1/python-biom-format_2.1.16-1_arm64.buildinfo as ./b1/python-biom-format_2.1.16-1_arm64.buildinfo.asc Fri Mar 27 20:01:28 UTC 2026 - build #1 for python-biom-format/trixie/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Fri Mar 27 20:01:28 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-peR36BN6, removing. /srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 13:38 b1 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 13:35 b2 -rw-r--r-- 1 jenkins jenkins 2628 May 27 2024 python-biom-format_2.1.16-1.dsc -rw------- 1 jenkins jenkins 3815 Feb 22 13:35 rbuildlog.y5R7vbO /srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly/b1: total 12976 -rw-r--r-- 1 jenkins jenkins 374948 Feb 22 13:38 build.log -rw-r--r-- 1 jenkins jenkins 67184 Feb 22 13:38 python-biom-format-doc_2.1.16-1_all.deb -rw-r--r-- 1 jenkins jenkins 11564 Feb 22 13:38 python-biom-format_2.1.16-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2628 Feb 22 13:38 python-biom-format_2.1.16-1.dsc -rw-r--r-- 1 jenkins jenkins 11500 Feb 22 13:38 python-biom-format_2.1.16-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 12382 Feb 22 13:38 python-biom-format_2.1.16-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2446 Feb 22 13:38 python-biom-format_2.1.16-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 2183 Feb 22 13:38 python-biom-format_2.1.16-1_source.changes -rw-r--r-- 1 jenkins jenkins 11896065 Feb 22 13:38 python-biom-format_2.1.16.orig.tar.gz -rw-r--r-- 1 jenkins jenkins 727340 Feb 22 13:38 python3-biom-format-dbgsym_2.1.16-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 159420 Feb 22 13:38 python3-biom-format_2.1.16-1_arm64.deb /srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly/b2: total 0 Sat Feb 22 13:38:29 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Mar 27 07:58:39 -12 2026 I: pbuilder-time-stamp: 1774641519 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-biom-format_2.1.16-1.dsc] I: copying [./python-biom-format_2.1.16.orig.tar.gz] I: copying [./python-biom-format_2.1.16-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-biom-format_2.1.16-1.dsc: unsupported subcommand dpkg-source: info: extracting python-biom-format in python-biom-format-2.1.16 dpkg-source: info: unpacking python-biom-format_2.1.16.orig.tar.gz dpkg-source: info: unpacking python-biom-format_2.1.16-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying ignore_local_dist-packages.patch dpkg-source: info: applying no-web-adds.patch dpkg-source: info: applying fix_future_import.patch dpkg-source: info: applying sphinx_1.6.patch dpkg-source: info: applying posix_shell.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3219725/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='679a7a6de31742c6b620743ddc4b044a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3219725' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly/pbuilderrc_PVXH --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly/b1 --logfile b1/build.log python-biom-format_2.1.16-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3219725/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, help2man, bash-completion, cython3, python3-all-dev, python3-click, python3-h5py, python3-numpy, python3-numpydoc, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx, python3-matplotlib, python3-pytest, python3-pytest-cov dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19922 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on bash-completion; however: Package bash-completion is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-click; however: Package python3-click is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-numpydoc; however: Package python3-numpydoc is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-cov; however: Package python3-pytest-cov is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bash-completion{a} blt{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgpg-error0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhdf5-310{a} libhdf5-hl-310{a} libicu72{a} libidn2-0{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-hotkeys{a} libjs-jquery-isonscreen{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-throttle-debounce{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap2{a} liblerc4{a} liblocale-gettext-perl{a} liblzf1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libnsl2{a} libopenjp2-7{a} libp11-kit0{a} libpipeline1{a} libpng16-16t64{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libsz2{a} libtasn1-6{a} libtcl8.6{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python-babel-localedata{a} python-matplotlib-data{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-attr{a} python3-autocommand{a} python3-babel{a} python3-brotli{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-contourpy{a} python3-coverage{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-defusedxml{a} python3-dev{a} python3-docutils{a} python3-fonttools{a} python3-fs{a} python3-h5py{a} python3-h5py-serial{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-markupsafe{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-numpydoc{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-pygments{a} python3-pyparsing{a} python3-pytest{a} python3-pytest-cov{a} python3-pytz{a} python3-requests{a} python3-roman{a} python3-scipy{a} python3-setuptools{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sympy{a} python3-tabulate{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-urllib3{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.12-tk{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libjson-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libsasl2-modules lynx publicsuffix python3-bottleneck python3-bs4 python3-cssselect python3-html5lib python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pooch python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 226 newly installed, 0 to remove and 0 not upgraded. Need to get 143 MB of archives. After unpacking 691 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 liblocale-gettext-perl arm64 1.07-7+b1 [15.2 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libpython3.13-minimal arm64 3.13.2-1 [853 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3.13-minimal arm64 3.13.2-1 [1997 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.13.1-2 [27.0 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 tzdata all 2025a-2 [259 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 libpython3.13-stdlib arm64 3.13.2-1 [1914 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 python3.13 arm64 3.13.2-1 [745 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.13.1-2 [9952 B] Get: 15 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.13.1-2 [28.0 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.9-1 [810 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.9-1 [1941 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 sgml-base all 1.31 [15.4 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 bash-completion all 1:2.16.0-7 [319 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 openssl arm64 3.4.1-1 [1390 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 ca-certificates all 20241223 [164 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-3 [92.0 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-3 [862 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [984 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.46-4 [276 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-2 [317 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-2 [386 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b4 [27.2 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libxft2 arm64 2.3.6-1+b4 [51.6 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+24 [217 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libxss1 arm64 1:1.2.3-1+b3 [17.1 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libtk8.6 arm64 8.6.16-1 [741 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7+b1 [538 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 blt arm64 2.5.3+dfsg-7+b1 [6344 B] Get: 58 http://deb.debian.org/debian trixie/main arm64 cython3 arm64 3.0.11+dfsg-2 [2726 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-3 [539 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 65 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.1 [920 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 80 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 75.6.0-1 [720 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20250108 [113 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 xml-core all 0.19 [20.1 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 fonts-lyx all 2.4.3-1 [190 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 help2man arm64 1.49.3+b1 [198 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libaec0 arm64 1.1.3-1+b1 [22.5 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.1-2 [104 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 96 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.12.1-2 [340 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.23-1+b1 [42.5 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 libexpat1-dev arm64 2.6.4-1 [143 kB] Get: 113 http://deb.debian.org/debian trixie/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB] Get: 114 http://deb.debian.org/debian trixie/main arm64 libgpg-error0 arm64 1.51-3 [78.5 kB] Get: 115 http://deb.debian.org/debian trixie/main arm64 libgcrypt20 arm64 1.11.0-7 [742 kB] Get: 116 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-16 [361 kB] Get: 117 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.83.3-2 [1421 kB] Get: 118 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 119 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 10.2.0-1 [443 kB] Get: 120 http://deb.debian.org/debian trixie/main arm64 libsz2 arm64 1.1.3-1+b1 [8044 B] Get: 121 http://deb.debian.org/debian trixie/main arm64 libhdf5-310 arm64 1.14.5+repack-3 [1155 kB] Get: 122 http://deb.debian.org/debian trixie/main arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [66.1 kB] Get: 123 http://deb.debian.org/debian trixie/main arm64 libimagequant0 arm64 2.18.0-1+b2 [34.6 kB] Get: 124 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 125 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 126 http://deb.debian.org/debian trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 127 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-hotkeys all 0.2.0-1 [12.6 kB] Get: 128 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-isonscreen all 1.2.0-1.1 [3196 B] Get: 129 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-metadata all 12-4 [6532 B] Get: 130 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [184 kB] Get: 131 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.2 kB] Get: 132 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 133 http://deb.debian.org/debian trixie/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 134 http://deb.debian.org/debian trixie/main arm64 libjs-sphinxdoc all 8.1.3-4 [30.4 kB] Get: 135 http://deb.debian.org/debian trixie/main arm64 libjson-perl all 4.10000-1 [87.5 kB] Get: 136 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.1-2 [1819 kB] Get: 137 http://deb.debian.org/debian trixie/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b2 [25.6 kB] Get: 138 http://deb.debian.org/debian trixie/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 139 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 140 http://deb.debian.org/debian trixie/main arm64 liblzf1 arm64 3.6-4+b3 [10.1 kB] Get: 141 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 142 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 143 http://deb.debian.org/debian trixie/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 144 http://deb.debian.org/debian trixie/main arm64 libopenjp2-7 arm64 2.5.3-1 [189 kB] Get: 145 http://deb.debian.org/debian trixie/main arm64 libpython3.13 arm64 3.13.2-1 [1970 kB] Get: 146 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 147 http://deb.debian.org/debian trixie/main arm64 libpython3.13-dev arm64 3.13.2-1 [4678 kB] Get: 148 http://deb.debian.org/debian trixie/main arm64 libpython3-dev arm64 3.13.1-2 [10.2 kB] Get: 149 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.9-1 [1909 kB] Get: 150 http://deb.debian.org/debian trixie/main arm64 libpython3.12t64 arm64 3.12.9-1 [1986 kB] Get: 151 http://deb.debian.org/debian trixie/main arm64 libpython3.12-dev arm64 3.12.9-1 [4796 kB] Get: 152 http://deb.debian.org/debian trixie/main arm64 libpython3-all-dev arm64 3.13.1-2 [1072 B] Get: 153 http://deb.debian.org/debian trixie/main arm64 libqhull-r8.0 arm64 2020.2-6+b2 [229 kB] Get: 154 http://deb.debian.org/debian trixie/main arm64 libraqm0 arm64 0.10.2-1 [13.6 kB] Get: 155 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 156 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 157 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 158 http://deb.debian.org/debian trixie/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [113 kB] Get: 159 http://deb.debian.org/debian trixie/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB] Get: 160 http://deb.debian.org/debian trixie/main arm64 libxslt1.1 arm64 1.1.35-1.1+b1 [222 kB] Get: 161 http://deb.debian.org/debian trixie/main arm64 python-babel-localedata all 2.17.0-1 [6050 kB] Get: 162 http://deb.debian.org/debian trixie/main arm64 python-matplotlib-data all 3.8.3-3 [2731 kB] Get: 163 http://deb.debian.org/debian trixie/main arm64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 164 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.9-1 [681 kB] Get: 165 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.13.1-2 [1056 B] Get: 166 http://deb.debian.org/debian trixie/main arm64 python3.13-dev arm64 3.13.2-1 [505 kB] Get: 167 http://deb.debian.org/debian trixie/main arm64 python3-dev arm64 3.13.1-2 [26.1 kB] Get: 168 http://deb.debian.org/debian trixie/main arm64 python3.12-dev arm64 3.12.9-1 [505 kB] Get: 169 http://deb.debian.org/debian trixie/main arm64 python3-all-dev arm64 3.13.1-2 [1076 B] Get: 170 http://deb.debian.org/debian trixie/main arm64 python3-attr all 25.1.0-1 [68.7 kB] Get: 171 http://deb.debian.org/debian trixie/main arm64 python3-babel all 2.17.0-1 [117 kB] Get: 172 http://deb.debian.org/debian trixie/main arm64 python3-brotli arm64 1.1.0-2+b6 [306 kB] Get: 173 http://deb.debian.org/debian trixie/main arm64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 174 http://deb.debian.org/debian trixie/main arm64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 175 http://deb.debian.org/debian trixie/main arm64 python3-charset-normalizer arm64 3.4.1-1 [132 kB] Get: 176 http://deb.debian.org/debian trixie/main arm64 python3-click all 8.1.8-1 [95.2 kB] Get: 177 http://deb.debian.org/debian trixie/main arm64 python3-numpy arm64 1:1.26.4+ds-13 [3815 kB] Get: 178 http://deb.debian.org/debian trixie/main arm64 python3-contourpy arm64 1.3.1-1 [237 kB] Get: 179 http://deb.debian.org/debian trixie/main arm64 python3-coverage arm64 7.6.0+dfsg1-2+b1 [177 kB] Get: 180 http://deb.debian.org/debian trixie/main arm64 python3-cycler all 0.12.1-1 [9496 B] Get: 181 http://deb.debian.org/debian trixie/main arm64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 182 http://deb.debian.org/debian trixie/main arm64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 183 http://deb.debian.org/debian trixie/main arm64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get: 184 http://deb.debian.org/debian trixie/main arm64 python3-roman all 5.0-1 [10.6 kB] Get: 185 http://deb.debian.org/debian trixie/main arm64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get: 186 http://deb.debian.org/debian trixie/main arm64 python3-pytz all 2025.1-3 [150 kB] Get: 187 http://deb.debian.org/debian trixie/main arm64 python3-tz all 2025.1-3 [4004 B] Get: 188 http://deb.debian.org/debian trixie/main arm64 python3-platformdirs all 4.3.6-1 [16.6 kB] Get: 189 http://deb.debian.org/debian trixie/main arm64 python3-fs all 2.4.16-6 [95.1 kB] Get: 190 http://deb.debian.org/debian trixie/main arm64 python3-lxml arm64 5.3.1-1 [1428 kB] Get: 191 http://deb.debian.org/debian trixie/main arm64 python3-lz4 arm64 4.4.0+dfsg-1 [25.6 kB] Get: 192 http://deb.debian.org/debian trixie/main arm64 python3-scipy arm64 1.14.1-4 [18.5 MB] Get: 193 http://deb.debian.org/debian trixie/main arm64 python3-mpmath all 1.3.0-1 [419 kB] Get: 194 http://deb.debian.org/debian trixie/main arm64 python3-sympy all 1.13.3-1 [4147 kB] Get: 195 http://deb.debian.org/debian trixie/main arm64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB] Get: 196 http://deb.debian.org/debian trixie/main arm64 unicode-data all 15.1.0-1 [8547 kB] Get: 197 http://deb.debian.org/debian trixie/main arm64 python3-fonttools arm64 4.55.3-2 [1501 kB] Get: 198 http://deb.debian.org/debian trixie/main arm64 python3-h5py-serial arm64 3.12.1-1+b2 [1246 kB] Get: 199 http://deb.debian.org/debian trixie/main arm64 python3-h5py all 3.12.1-1 [15.0 kB] Get: 200 http://deb.debian.org/debian trixie/main arm64 python3-idna all 3.10-1 [42.0 kB] Get: 201 http://deb.debian.org/debian trixie/main arm64 python3-imagesize all 1.4.1-1 [6688 B] Get: 202 http://deb.debian.org/debian trixie/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 203 http://deb.debian.org/debian trixie/main arm64 python3-markupsafe arm64 2.1.5-1+b3 [14.0 kB] Get: 204 http://deb.debian.org/debian trixie/main arm64 python3-jinja2 all 3.1.5-2 [107 kB] Get: 205 http://deb.debian.org/debian trixie/main arm64 python3-kiwisolver arm64 1.4.7-3 [71.5 kB] Get: 206 http://deb.debian.org/debian trixie/main arm64 python3-pil arm64 11.1.0-5 [514 kB] Get: 207 http://deb.debian.org/debian trixie/main arm64 python3.12-tk arm64 3.12.9-1 [111 kB] Get: 208 http://deb.debian.org/debian trixie/main arm64 python3.13-tk arm64 3.13.2-1 [102 kB] Get: 209 http://deb.debian.org/debian trixie/main arm64 python3-tk arm64 3.13.1-1 [9464 B] Get: 210 http://deb.debian.org/debian trixie/main arm64 python3-pil.imagetk arm64 11.1.0-5 [81.6 kB] Get: 211 http://deb.debian.org/debian trixie/main arm64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 212 http://deb.debian.org/debian trixie/main arm64 python3-packaging all 24.2-1 [55.3 kB] Get: 213 http://deb.debian.org/debian trixie/main arm64 python3-matplotlib arm64 3.8.3-3+b2 [5583 kB] Get: 214 http://deb.debian.org/debian trixie/main arm64 sphinx-common all 8.1.3-4 [616 kB] Get: 215 http://deb.debian.org/debian trixie/main arm64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 216 http://deb.debian.org/debian trixie/main arm64 python3-urllib3 all 2.3.0-1 [114 kB] Get: 217 http://deb.debian.org/debian trixie/main arm64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 218 http://deb.debian.org/debian trixie/main arm64 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 219 http://deb.debian.org/debian trixie/main arm64 python3-sphinx all 8.1.3-4 [468 kB] Get: 220 http://deb.debian.org/debian trixie/main arm64 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 221 http://deb.debian.org/debian trixie/main arm64 python3-numpydoc all 1.8.0-1 [51.4 kB] Get: 222 http://deb.debian.org/debian trixie/main arm64 python3-pandas-lib arm64 2.2.3+dfsg-8 [6029 kB] Get: 223 http://deb.debian.org/debian trixie/main arm64 python3-pandas all 2.2.3+dfsg-8 [3097 kB] Get: 224 http://deb.debian.org/debian trixie/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 225 http://deb.debian.org/debian trixie/main arm64 python3-pytest all 8.3.4-1 [250 kB] Get: 226 http://deb.debian.org/debian trixie/main arm64 python3-pytest-cov all 5.0.0-1 [26.8 kB] Fetched 143 MB in 1s (218 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19922 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-7+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.2-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.2-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.2-1_arm64.deb ... Unpacking python3.13-minimal (3.13.2-1) ... Setting up libpython3.13-minimal:arm64 (3.13.2-1) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.13-minimal (3.13.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_arm64.deb ... Unpacking python3.13 (3.13.2-1) ... 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Selecting previously unselected package libpython3.12-minimal:arm64. Preparing to unpack .../001-libpython3.12-minimal_3.12.9-1_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.9-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../002-python3.12-minimal_3.12.9-1_arm64.deb ... Unpacking python3.12-minimal (3.12.9-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../003-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package bash-completion. Preparing to unpack .../005-bash-completion_1%3a2.16.0-7_all.deb ... Unpacking bash-completion (1:2.16.0-7) ... Selecting previously unselected package openssl. Preparing to unpack .../006-openssl_3.4.1-1_arm64.deb ... Unpacking openssl (3.4.1-1) ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../128-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package libopenjp2-7:arm64. Preparing to unpack .../129-libopenjp2-7_2.5.3-1_arm64.deb ... Unpacking libopenjp2-7:arm64 (2.5.3-1) ... Selecting previously unselected package libpython3.13:arm64. Preparing to unpack .../130-libpython3.13_3.13.2-1_arm64.deb ... Unpacking libpython3.13:arm64 (3.13.2-1) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../131-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... 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Selecting previously unselected package libpython3-all-dev:arm64. Preparing to unpack .../137-libpython3-all-dev_3.13.1-2_arm64.deb ... Unpacking libpython3-all-dev:arm64 (3.13.1-2) ... Selecting previously unselected package libqhull-r8.0:arm64. Preparing to unpack .../138-libqhull-r8.0_2020.2-6+b2_arm64.deb ... Unpacking libqhull-r8.0:arm64 (2020.2-6+b2) ... Selecting previously unselected package libraqm0:arm64. Preparing to unpack .../139-libraqm0_0.10.2-1_arm64.deb ... Unpacking libraqm0:arm64 (0.10.2-1) ... Selecting previously unselected package libsharpyuv0:arm64. Preparing to unpack .../140-libsharpyuv0_1.5.0-0.1_arm64.deb ... Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... Selecting previously unselected package libwebp7:arm64. Preparing to unpack .../141-libwebp7_1.5.0-0.1_arm64.deb ... Unpacking libwebp7:arm64 (1.5.0-0.1) ... Selecting previously unselected package libtiff6:arm64. Preparing to unpack .../142-libtiff6_4.5.1+git230720-5_arm64.deb ... Unpacking libtiff6:arm64 (4.5.1+git230720-5) ... Selecting previously unselected package libwebpdemux2:arm64. Preparing to unpack .../143-libwebpdemux2_1.5.0-0.1_arm64.deb ... Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ... Selecting previously unselected package libwebpmux3:arm64. Preparing to unpack .../144-libwebpmux3_1.5.0-0.1_arm64.deb ... Unpacking libwebpmux3:arm64 (1.5.0-0.1) ... Selecting previously unselected package libxslt1.1:arm64. Preparing to unpack .../145-libxslt1.1_1.1.35-1.1+b1_arm64.deb ... Unpacking libxslt1.1:arm64 (1.1.35-1.1+b1) ... Selecting previously unselected package python-babel-localedata. Preparing to unpack .../146-python-babel-localedata_2.17.0-1_all.deb ... Unpacking python-babel-localedata (2.17.0-1) ... Selecting previously unselected package python-matplotlib-data. Preparing to unpack .../147-python-matplotlib-data_3.8.3-3_all.deb ... Unpacking python-matplotlib-data (3.8.3-3) ... Selecting previously unselected package python3-alabaster. 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Setting up liblcms2-2:arm64 (2.16-2) ... Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... Setting up libxau6:arm64 (1:1.0.11-1) ... Setting up libxdmcp6:arm64 (1:1.1.5-1) ... Setting up libkeyutils1:arm64 (1.6.3-4) ... Setting up libxcb1:arm64 (1.17.0-2+b1) ... Setting up libicu72:arm64 (72.1-6) ... Setting up liblerc4:arm64 (4.0.0+ds-5) ... Setting up bsdextrautils (2.40.4-3) ... Setting up libgpg-error0:arm64 (1.51-3) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up fonts-lyx (2.4.3-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libbrotli1:arm64 (1.1.0-2+b6) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up libpython3.12-minimal:arm64 (3.12.9-1) ... Setting up x11-common (1:7.7+24) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libnghttp2-14:arm64 (1.64.0-1) ... Setting up libdeflate0:arm64 (1.23-1+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libgcrypt20:arm64 (1.11.0-7) ... Setting up libqhull-r8.0:arm64 (2020.2-6+b2) ... Setting up libcom-err2:arm64 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... Setting up libjbig0:arm64 (2.1-6.1+b2) ... Setting up libaec0:arm64 (1.1.3-1+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up python-babel-localedata (2.17.0-1) ... Setting up libkrb5support0:arm64 (1.21.3-4) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8+b1) ... Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Mar 27 19:59:11 UTC 2026. Universal Time is now: Fri Mar 27 19:59:11 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:arm64 (3.12.1-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libexpat1-dev:arm64 (2.6.4-1) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up bash-completion (1:2.16.0-7) ... Setting up liblzf1:arm64 (3.6-4+b3) ... Setting up libfribidi0:arm64 (1.0.16-1) ... Setting up libimagequant0:arm64 (2.18.0-1+b2) ... Setting up libunistring5:arm64 (1.3-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:arm64 (1.6.46-4) ... Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ... Setting up autopoint (0.23.1-1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:arm64 (1.21.3-4) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8+b1) ... Setting up libgfortran5:arm64 (14.2.0-16) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:arm64 (1.6.0-2) ... Setting up libwebp7:arm64 (1.5.0-0.1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:arm64 (4.5.1+git230720-5) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libjson-perl (4.10000-1) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up libopenjp2-7:arm64 (2.5.3-1) ... Setting up libx11-6:arm64 (2:1.8.10-2) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:arm64 (1.21.3-4) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libjs-jquery-hotkeys (0.2.0-1) ... Setting up python-matplotlib-data (3.8.3-3) ... Setting up openssl (3.4.1-1) ... Setting up libwebpmux3:arm64 (1.5.0-0.1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libldap2:arm64 (2.6.9+dfsg-1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up libsz2:arm64 (1.1.3-1+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up python3.12-minimal (3.12.9-1) ... Setting up liblapack3:arm64 (3.12.1-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.23.1-1) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b4) ... Setting up libtool (2.5.4-3) ... Setting up fontconfig-config (2.15.0-2) ... Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... Setting up libxext6:arm64 (2:1.3.4-1+b3) ... Setting up libidn2-0:arm64 (2.3.7-2+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3+b1) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libglib2.0-0t64:arm64 (2.83.3-2) ... No schema files found: doing nothing. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libjs-jquery-metadata (12-4) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libjs-jquery-isonscreen (1.2.0-1.1) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-4) ... Setting up libjs-sphinxdoc (8.1.3-4) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... Setting up groff-base (1.23.0-7) ... Setting up xml-core (0.19) ... Setting up libxslt1.1:arm64 (1.1.35-1.1+b1) ... Setting up libharfbuzz0b:arm64 (10.2.0-1) ... 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Setting up python3-platformdirs (4.3.6-1) ... Setting up python3-roman (5.0-1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.5-2) ... Setting up python3-pygments (2.18.0+dfsg-2) ... Setting up python3-packaging (24.2-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up python3-snowballstemmer (2.2.0-4) ... Setting up python3-brotli (1.1.0-2+b6) ... Setting up libraqm0:arm64 (0.10.2-1) ... Setting up libpython3.13-dev:arm64 (3.13.2-1) ... Setting up sphinx-common (8.1.3-4) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.7-3) ... Setting up python3-idna (3.10-1) ... Setting up cython3 (3.0.11+dfsg-2) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-numpy (1:1.26.4+ds-13) ... Setting up python3-urllib3 (2.3.0-1) ... 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Setting up python3-defusedxml (0.7.1-3) ... Setting up python3-charset-normalizer (3.4.1-1) ... Setting up python3.13-dev (3.13.2-1) ... Setting up python3-pytest (8.3.4-1) ... Setting up python3-alabaster (0.7.16-0.1) ... Setting up blt (2.5.3+dfsg-7+b1) ... Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-8) ... Setting up python3.12 (3.12.9-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-tabulate (0.9.0-1) ... Setting up python3-all (3.13.1-2) ... Setting up python3-coverage (7.6.0+dfsg1-2+b1) ... Setting up python3-tk:arm64 (3.13.1-1) ... Setting up debhelper (13.24.1) ... Setting up python3-pytz (2025.1-3) ... Setting up python3-pytest-cov (5.0.0-1) ... Setting up python3-tz (2025.1-3) ... Setting up python3-fs (2.4.16-6) ... Setting up libpython3.12t64:arm64 (3.12.9-1) ... Setting up python3-pil:arm64 (11.1.0-5) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pandas (2.2.3+dfsg-8) ... Setting up python3-pil.imagetk:arm64 (11.1.0-5) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.1-2) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up libhdf5-310:arm64 (1.14.5+repack-3) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up libhdf5-hl-310:arm64 (1.14.5+repack-3) ... Setting up python3-setuptools (75.6.0-1) ... Setting up python3-h5py-serial (3.12.1-1+b2) ... Setting up libpython3.12-dev:arm64 (3.12.9-1) ... Setting up libpython3-all-dev:arm64 (3.13.1-2) ... Setting up python3-h5py (3.12.1-1) ... Setting up python3.12-dev (3.12.9-1) ... Setting up dh-python (6.20250108) ... Setting up python3-all-dev (3.13.1-2) ... Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... Setting up python3-fonttools (4.55.3-2) ... Setting up python3-matplotlib (3.8.3-3+b2) ... Processing triggers for libc-bin (2.40-7) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.21.2+dfsg-2) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.21.2+dfsg-2) ... Setting up python3-sphinx (8.1.3-4) ... Setting up python3-numpydoc (1.8.0-1) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-biom-format-2.1.16/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-biom-format_2.1.16-1_source.changes dpkg-buildpackage: info: source package python-biom-format dpkg-buildpackage: info: source version 2.1.16-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with bash-completion,sphinxdoc --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p "3.12 3.13" I: pybuild base:311: python3.12 setup.py clean /build/reproducible-path/python-biom-format-2.1.16/setup.py:15: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as TestCommand /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-biom-format-2.1.16/biom/_filter.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-biom-format-2.1.16/biom/_subsample.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-biom-format-2.1.16/biom/_transform.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling biom/_filter.pyx because it changed. Compiling biom/_transform.pyx because it changed. Compiling biom/_subsample.pyx because it changed. [1/3] Cythonizing biom/_filter.pyx [2/3] Cythonizing biom/_subsample.pyx [3/3] Cythonizing biom/_transform.pyx /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running clean removing '/build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.13 setup.py clean /build/reproducible-path/python-biom-format-2.1.16/setup.py:15: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as TestCommand /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running clean removing '/build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-biom-format.substvars debian/python-biom-format-doc.substvars ./biom/_filter.c ./biom/_subsample.c ./biom/_transform.c debian/files rm -fr -- debian/python3-biom-format/ debian/tmp/ debian/python-biom-format-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --with bash-completion,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p "3.12 3.13" I: pybuild base:311: python3.12 setup.py config /build/reproducible-path/python-biom-format-2.1.16/setup.py:15: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as TestCommand /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-biom-format-2.1.16/biom/_filter.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-biom-format-2.1.16/biom/_subsample.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-biom-format-2.1.16/biom/_transform.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling biom/_filter.pyx because it changed. Compiling biom/_transform.pyx because it changed. Compiling biom/_subsample.pyx because it changed. [1/3] Cythonizing biom/_filter.pyx [2/3] Cythonizing biom/_subsample.pyx [3/3] Cythonizing biom/_transform.pyx /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running config I: pybuild base:311: python3.13 setup.py config /build/reproducible-path/python-biom-format-2.1.16/setup.py:15: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as TestCommand /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/python-biom-format-2.1.16' # arch USE_CYTHON=true dh_auto_build pybuild --build -i python{version} -p "3.12 3.13" I: pybuild base:311: /usr/bin/python3.12 setup.py build /build/reproducible-path/python-biom-format-2.1.16/setup.py:15: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as TestCommand /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running build running build_py creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom copying biom/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom copying biom/util.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom copying biom/table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom copying biom/parse.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom copying biom/exception.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom copying biom/err.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests copying biom/tests/test_util.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests copying biom/tests/test_table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests copying biom/tests/test_parse.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests copying biom/tests/test_err.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests copying biom/tests/long_lines.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests copying biom/tests/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/util.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/uc_processor.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/table_validator.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/table_summarizer.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/table_subsetter.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/table_normalizer.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/table_ids.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/table_head.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/table_converter.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/metadata_exporter.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/metadata_adder.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/installation_informer.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_validate_table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_uc_processor.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_table_normalizer.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_table_converter.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_summarize_table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_subset_table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_show_install_info.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_add_metadata.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli running egg_info creating biom_format.egg-info writing biom_format.egg-info/PKG-INFO writing dependency_links to biom_format.egg-info/dependency_links.txt writing entry points to biom_format.egg-info/entry_points.txt writing requirements to biom_format.egg-info/requires.txt writing top-level names to biom_format.egg-info/top_level.txt writing manifest file 'biom_format.egg-info/SOURCES.txt' dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'support_files' warning: no directories found matching 'tests/test_data' no previously-included directories found matching 'docs/_build' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution adding license file 'COPYING.txt' writing manifest file 'biom_format.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.assets' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.assets' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.assets' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.assets' to be distributed and are already explicitly excluding 'biom.assets' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.tests.bench_tables' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.bench_tables' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.tests.bench_tables' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.tests.bench_tables' to be distributed and are already explicitly excluding 'biom.tests.bench_tables' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.tests.test_cli.test_data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.test_cli.test_data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.tests.test_cli.test_data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.tests.test_cli.test_data' to be distributed and are already explicitly excluding 'biom.tests.test_cli.test_data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying biom/_filter.pyx -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom copying biom/_subsample.pyx -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom copying biom/_transform.pyx -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/assets copying biom/assets/exercise_api.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/assets copying biom/assets/exercise_cli.sh -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/assets creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/test_data/bad_table.txt -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/bad_table.txt.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/edgecase_issue_952.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/empty.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/no-contents.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.json -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.json.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test_grp_metadata.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/test.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/test.json -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data running build_ext building 'biom._filter' extension creating build/temp.linux-aarch64-cpython-312/biom aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c biom/_filter.c -o build/temp.linux-aarch64-cpython-312/biom/_filter.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from biom/_filter.c:1249: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/biom/_filter.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/_filter.cpython-312-aarch64-linux-gnu.so building 'biom._transform' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c biom/_transform.c -o build/temp.linux-aarch64-cpython-312/biom/_transform.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from biom/_transform.c:1249: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/biom/_transform.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/_transform.cpython-312-aarch64-linux-gnu.so building 'biom._subsample' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c biom/_subsample.c -o build/temp.linux-aarch64-cpython-312/biom/_subsample.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from biom/_subsample.c:1249: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/biom/_subsample.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/_subsample.cpython-312-aarch64-linux-gnu.so I: pybuild base:311: /usr/bin/python3 setup.py build /build/reproducible-path/python-biom-format-2.1.16/setup.py:15: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as TestCommand /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running build running build_py creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom copying biom/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom copying biom/util.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom copying biom/table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom copying biom/parse.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom copying biom/exception.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom copying biom/err.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests copying biom/tests/test_util.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests copying biom/tests/test_table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests copying biom/tests/test_parse.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests copying biom/tests/test_err.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests copying biom/tests/long_lines.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests copying biom/tests/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/util.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/uc_processor.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/table_validator.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/table_summarizer.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/table_subsetter.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/table_normalizer.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/table_ids.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/table_head.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/table_converter.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/metadata_exporter.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/metadata_adder.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/installation_informer.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_validate_table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_uc_processor.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_table_normalizer.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_table_converter.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_summarize_table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_subset_table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_show_install_info.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_add_metadata.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli running egg_info writing biom_format.egg-info/PKG-INFO writing dependency_links to biom_format.egg-info/dependency_links.txt writing entry points to biom_format.egg-info/entry_points.txt writing requirements to biom_format.egg-info/requires.txt writing top-level names to biom_format.egg-info/top_level.txt dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'support_files' warning: no directories found matching 'tests/test_data' no previously-included directories found matching 'docs/_build' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution adding license file 'COPYING.txt' writing manifest file 'biom_format.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.assets' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.assets' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.assets' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.assets' to be distributed and are already explicitly excluding 'biom.assets' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.tests.bench_tables' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.bench_tables' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.tests.bench_tables' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.tests.bench_tables' to be distributed and are already explicitly excluding 'biom.tests.bench_tables' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.tests.test_cli.test_data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.test_cli.test_data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.tests.test_cli.test_data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.tests.test_cli.test_data' to be distributed and are already explicitly excluding 'biom.tests.test_cli.test_data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying biom/_filter.pyx -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom copying biom/_subsample.pyx -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom copying biom/_transform.pyx -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/assets copying biom/assets/exercise_api.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/assets copying biom/assets/exercise_cli.sh -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/assets creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/test_data/bad_table.txt -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/bad_table.txt.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/edgecase_issue_952.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/empty.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/no-contents.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.json -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.json.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test_grp_metadata.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/test.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/test.json -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data running build_ext building 'biom._filter' extension creating build/temp.linux-aarch64-cpython-313/biom aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c biom/_filter.c -o build/temp.linux-aarch64-cpython-313/biom/_filter.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from biom/_filter.c:1249: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/biom/_filter.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_filter.cpython-313-aarch64-linux-gnu.so building 'biom._transform' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c biom/_transform.c -o build/temp.linux-aarch64-cpython-313/biom/_transform.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from biom/_transform.c:1249: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/biom/_transform.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_transform.cpython-313-aarch64-linux-gnu.so building 'biom._subsample' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c biom/_subsample.c -o build/temp.linux-aarch64-cpython-313/biom/_subsample.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from biom/_subsample.c:1249: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/biom/_subsample.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_subsample.cpython-313-aarch64-linux-gnu.so # indep: PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b html doc build/html Running Sphinx v8.1.3 loading translations [en]... done making output directory... done Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. [autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst WARNING: Failed to import biom.table. Possible hints: * ModuleNotFoundError: No module named 'biom._filter' * KeyError: 'biom' WARNING: Failed to import biom. Possible hints: * ModuleNotFoundError: No module named 'biom._filter' * KeyError: 'biom' building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 12 source files that are out of date updating environment: [new config] 12 added, 0 changed, 0 removed reading sources... [ 8%] BIOM_LICENSE reading sources... [ 17%] documentation/adding_metadata reading sources... [ 25%] documentation/biom_conversion reading sources... [ 33%] documentation/biom_format reading sources... [ 42%] documentation/format_versions/biom-1.0 reading sources... [ 50%] documentation/format_versions/biom-2.0 reading sources... [ 58%] documentation/format_versions/biom-2.1 reading sources... [ 67%] documentation/index reading sources... [ 75%] documentation/quick_usage_examples reading sources... [ 83%] documentation/summarizing_biom_tables reading sources... [ 92%] documentation/table_objects reading sources... [100%] index WARNING: autodoc: failed to import module 'biom'; the following exception was raised: No module named 'biom._filter' [autodoc.import_object] WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised: No module named 'biom._filter' [autodoc.import_object] looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying static files... Writing evaluated template result to /build/reproducible-path/python-biom-format-2.1.16/build/html/_static/language_data.js Writing evaluated template result to /build/reproducible-path/python-biom-format-2.1.16/build/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/python-biom-format-2.1.16/build/html/_static/basic.css Writing evaluated template result to /build/reproducible-path/python-biom-format-2.1.16/build/html/_static/haiku.css copying static files: done copying extra files... copying extra files: done copying assets: done writing output... [ 8%] BIOM_LICENSE writing output... [ 17%] documentation/adding_metadata writing output... [ 25%] documentation/biom_conversion writing output... [ 33%] documentation/biom_format writing output... [ 42%] documentation/format_versions/biom-1.0 writing output... [ 50%] documentation/format_versions/biom-2.0 writing output... [ 58%] documentation/format_versions/biom-2.1 writing output... [ 67%] documentation/index writing output... [ 75%] documentation/quick_usage_examples writing output... [ 83%] documentation/summarizing_biom_tables writing output... [ 92%] documentation/table_objects writing output... [100%] index /build/reproducible-path/python-biom-format-2.1.16/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated [toc.no_title] /build/reproducible-path/python-biom-format-2.1.16/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated [toc.no_title] /build/reproducible-path/python-biom-format-2.1.16/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated [toc.no_title] /build/reproducible-path/python-biom-format-2.1.16/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated [toc.no_title] generating indices... done writing additional pages... search done copying images... [100%] _static/biom-format.png dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 8 warnings. The HTML pages are in build/html. PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b man doc build/man Running Sphinx v8.1.3 loading translations [en]... done making output directory... done Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. [autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst WARNING: Failed to import biom.table. Possible hints: * KeyError: 'biom' * ModuleNotFoundError: No module named 'biom._filter' WARNING: Failed to import biom. Possible hints: * KeyError: 'biom' * ModuleNotFoundError: No module named 'biom._filter' building [mo]: targets for 0 po files that are out of date writing output... building [man]: all manpages updating environment: [new config] 12 added, 0 changed, 0 removed reading sources... [ 8%] BIOM_LICENSE reading sources... [ 17%] documentation/adding_metadata reading sources... [ 25%] documentation/biom_conversion reading sources... [ 33%] documentation/biom_format reading sources... [ 42%] documentation/format_versions/biom-1.0 reading sources... [ 50%] documentation/format_versions/biom-2.0 reading sources... [ 58%] documentation/format_versions/biom-2.1 reading sources... [ 67%] documentation/index reading sources... [ 75%] documentation/quick_usage_examples reading sources... [ 83%] documentation/summarizing_biom_tables reading sources... [ 92%] documentation/table_objects reading sources... [100%] index WARNING: autodoc: failed to import module 'biom'; the following exception was raised: No module named 'biom._filter' [autodoc.import_object] WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised: No module named 'biom._filter' [autodoc.import_object] looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying assets: done writing... biom.1 { documentation/index documentation/biom_format documentation/format_versions/biom-1.0 documentation/format_versions/biom-2.0 documentation/format_versions/biom-2.1 documentation/quick_usage_examples documentation/table_objects documentation/biom_conversion documentation/adding_metadata documentation/summarizing_biom_tables BIOM_LICENSE } done build succeeded, 4 warnings. The manual pages are in build/man. make[1]: Leaving directory '/build/reproducible-path/python-biom-format-2.1.16' dh_auto_test -O--buildsystem=pybuild pybuild --test --test-pytest -i python{version} -p "3.12 3.13" I: pybuild pybuild:308: cp -r /build/reproducible-path/python-biom-format-2.1.16/examples /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build I: pybuild base:311: cd /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build; python3.12 -m pytest ============================= test session starts ============================== platform linux -- Python 3.12.9, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build configfile: pytest.ini testpaths: biom plugins: cov-5.0.0, typeguard-4.4.1 collected 384 items biom/tests/test_cli/test_add_metadata.py .... [ 1%] biom/tests/test_cli/test_show_install_info.py . [ 1%] biom/tests/test_cli/test_subset_table.py ..... [ 2%] biom/tests/test_cli/test_summarize_table.py .. [ 3%] biom/tests/test_cli/test_table_converter.py ...... [ 4%] biom/tests/test_cli/test_table_normalizer.py . [ 4%] biom/tests/test_cli/test_uc_processor.py ...... [ 6%] biom/tests/test_cli/test_validate_table.py ....................... [ 12%] biom/tests/test_err.py ..................... [ 17%] biom/tests/test_parse.py ........................... [ 25%] biom/tests/test_table.py ............................................... [ 37%] ..ssss.................................................................. [ 55%] ......sss............................................................... [ 74%] ........................................................................ [ 93%] ..... [ 94%] biom/tests/test_util.py .................... [100%] =============================== warnings summary =============================== biom/tests/test_table.py::SupportTests::test_remove_empty_both biom/tests/test_table.py::SupportTests::test_remove_empty_obs biom/tests/test_table.py::SupportTests::test_remove_empty_sample /usr/lib/python3/dist-packages/scipy/sparse/_index.py:151: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil and dok are more efficient. self._set_arrayXarray(i, j, x) biom/tests/test_table.py::TableTests::test_nnz_issue_727 /usr/lib/python3/dist-packages/scipy/sparse/_index.py:108: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil and dok are more efficient. self._set_intXint(row, col, x.flat[0]) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================== 377 passed, 7 skipped, 4 warnings in 4.40s ================== I: pybuild pybuild:308: cp -r /build/reproducible-path/python-biom-format-2.1.16/examples /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build I: pybuild base:311: cd /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build; python3.13 -m pytest ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build configfile: pytest.ini testpaths: biom plugins: cov-5.0.0, typeguard-4.4.1 collected 384 items biom/tests/test_cli/test_add_metadata.py .... [ 1%] biom/tests/test_cli/test_show_install_info.py . [ 1%] biom/tests/test_cli/test_subset_table.py ..... [ 2%] biom/tests/test_cli/test_summarize_table.py .. [ 3%] biom/tests/test_cli/test_table_converter.py ...... [ 4%] biom/tests/test_cli/test_table_normalizer.py . [ 4%] biom/tests/test_cli/test_uc_processor.py ...... [ 6%] biom/tests/test_cli/test_validate_table.py ....................... [ 12%] biom/tests/test_err.py ..................... [ 17%] biom/tests/test_parse.py ........................... [ 25%] biom/tests/test_table.py ............................................... [ 37%] ..ssss.................................................................. [ 55%] ......sss............................................................... [ 74%] ........................................................................ [ 93%] ..... [ 94%] biom/tests/test_util.py .................... [100%] =============================== warnings summary =============================== biom/tests/test_table.py::SupportTests::test_remove_empty_both biom/tests/test_table.py::SupportTests::test_remove_empty_obs biom/tests/test_table.py::SupportTests::test_remove_empty_sample /usr/lib/python3/dist-packages/scipy/sparse/_index.py:151: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil and dok are more efficient. self._set_arrayXarray(i, j, x) biom/tests/test_table.py::TableTests::test_nnz_issue_727 /usr/lib/python3/dist-packages/scipy/sparse/_index.py:108: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil and dok are more efficient. self._set_intXint(row, col, x.flat[0]) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================== 377 passed, 7 skipped, 4 warnings in 4.11s ================== rm -fr -- /tmp/dh-xdg-rundir-8cPb4qtA create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-biom-format.substvars debian/python-biom-format-doc.substvars rm -fr -- debian/.debhelper/generated/python3-biom-format/ debian/python3-biom-format/ debian/tmp/ debian/.debhelper/generated/python-biom-format-doc/ debian/python-biom-format-doc/ rm -f debian/python-biom-format-doc.debhelper.log debian/python3-biom-format.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/python-biom-format-2.1.16' dh_auto_install install -m0755 -d /build/reproducible-path/python-biom-format-2.1.16/debian/tmp pybuild --install -i python{version} -p "3.12 3.13" --dest-dir=/build/reproducible-path/python-biom-format-2.1.16/debian/tmp I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format /build/reproducible-path/python-biom-format-2.1.16/setup.py:15: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as TestCommand /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing biom_format.egg-info/PKG-INFO writing dependency_links to biom_format.egg-info/dependency_links.txt writing entry points to biom_format.egg-info/entry_points.txt writing requirements to biom_format.egg-info/requires.txt writing top-level names to biom_format.egg-info/top_level.txt dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'support_files' warning: no directories found matching 'tests/test_data' no previously-included directories found matching 'docs/_build' warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution adding license file 'COPYING.txt' writing manifest file 'biom_format.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.assets' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.assets' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.assets' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.assets' to be distributed and are already explicitly excluding 'biom.assets' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.tests.bench_tables' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.bench_tables' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.tests.bench_tables' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.tests.bench_tables' to be distributed and are already explicitly excluding 'biom.tests.bench_tables' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.tests.test_cli.test_data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.test_cli.test_data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.tests.test_cli.test_data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.tests.test_cli.test_data' to be distributed and are already explicitly excluding 'biom.tests.test_cli.test_data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) running build_ext running install_lib creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/.pytest_cache creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/.pytest_cache/v creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/.pytest_cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/.pytest_cache/.gitignore -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/.pytest_cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/.pytest_cache/README.md -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/.pytest_cache creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/examples/sam_md.txt -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/examples/rich_sparse_otu_table_hdf5_group_metadata.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/examples/rich_sparse_otu_table_hdf5.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/examples/rich_sparse_otu_table.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/examples/obs_md.txt -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/examples/min_sparse_otu_table_hdf5.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/examples/min_sparse_otu_table.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/examples creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/__pycache__/parse.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/__pycache__/err.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/__pycache__/util.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/__pycache__/exception.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/__pycache__/table.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/_subsample.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/_transform.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/_filter.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/assets copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/assets/exercise_cli.sh -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/assets copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/assets/exercise_api.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/assets copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/_transform.pyx -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/_subsample.pyx -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/_filter.pyx -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/uc_processor.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/table_validator.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/table_ids.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/table_head.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/table_normalizer.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/table_subsetter.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/installation_informer.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/table_converter.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/metadata_exporter.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/util.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/metadata_adder.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/table_summarizer.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/installation_informer.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/metadata_adder.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/metadata_exporter.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/table_converter.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/table_head.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/table_ids.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/table_normalizer.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/table_subsetter.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/table_summarizer.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/table_validator.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/uc_processor.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/util.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/__pycache__/test_util.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/__pycache__/test_table.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/__pycache__/test_parse.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/__pycache__/test_err.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/__pycache__/long_lines.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/__pycache__ creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/test_validate_table.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/test_uc_processor.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/test_table_normalizer.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/test_table_converter.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/test_summarize_table.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/test_subset_table.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/test_show_install_info.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/test_add_metadata.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data/test.json -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data/test.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_add_metadata.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_show_install_info.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_subset_table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_summarize_table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_table_converter.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_table_normalizer.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_uc_processor.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_validate_table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/test_grp_metadata.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/test.json.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/test.json -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/test.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/no-contents.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/empty.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/edgecase_issue_952.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/bad_table.txt.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/bad_table.txt -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/long_lines.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_err.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_parse.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_util.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/err.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/exception.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/parse.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/util.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/assets/exercise_api.py to exercise_api.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/installation_informer.py to installation_informer.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/metadata_adder.py to metadata_adder.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/metadata_exporter.py to metadata_exporter.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/table_converter.py to table_converter.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/table_head.py to table_head.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/table_ids.py to table_ids.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/table_normalizer.py to table_normalizer.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/table_subsetter.py to table_subsetter.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/table_summarizer.py to table_summarizer.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/table_validator.py to table_validator.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/uc_processor.py to uc_processor.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/util.py to util.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_add_metadata.py to test_add_metadata.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_show_install_info.py to test_show_install_info.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_subset_table.py to test_subset_table.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_summarize_table.py to test_summarize_table.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_table_converter.py to test_table_converter.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_table_normalizer.py to test_table_normalizer.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_uc_processor.py to test_uc_processor.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_validate_table.py to test_validate_table.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/long_lines.py to long_lines.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_err.py to test_err.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_parse.py to test_parse.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_table.py to test_table.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_util.py to test_util.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/err.py to err.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/exception.py to exception.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/parse.py to parse.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/table.py to table.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/util.py to util.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/__init__.py to __init__.cpython-312.pyc running install_egg_info Copying biom_format.egg-info to /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom_format-2.1.16.egg-info Skipping SOURCES.txt running install_scripts Installing biom script to /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/bin I: pybuild pybuild:334: dh_numpy3 mv debian/python3-biom-format.substvars.new debian/python3-biom-format.substvars mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format /build/reproducible-path/python-biom-format-2.1.16/setup.py:15: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as TestCommand /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing biom_format.egg-info/PKG-INFO writing dependency_links to biom_format.egg-info/dependency_links.txt writing entry points to biom_format.egg-info/entry_points.txt writing requirements to biom_format.egg-info/requires.txt writing top-level names to biom_format.egg-info/top_level.txt dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'support_files' warning: no directories found matching 'tests/test_data' no previously-included directories found matching 'docs/_build' warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution adding license file 'COPYING.txt' writing manifest file 'biom_format.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.assets' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.assets' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.assets' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.assets' to be distributed and are already explicitly excluding 'biom.assets' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.tests.bench_tables' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.bench_tables' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.tests.bench_tables' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.tests.bench_tables' to be distributed and are already explicitly excluding 'biom.tests.bench_tables' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.tests.test_cli.test_data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.test_cli.test_data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.tests.test_cli.test_data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.tests.test_cli.test_data' to be distributed and are already explicitly excluding 'biom.tests.test_cli.test_data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) running build_ext running install_lib creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache/v creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/.pytest_cache/.gitignore -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/.pytest_cache/README.md -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/sam_md.txt -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/rich_sparse_otu_table_hdf5_group_metadata.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/rich_sparse_otu_table_hdf5.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/rich_sparse_otu_table.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/obs_md.txt -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/min_sparse_otu_table_hdf5.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/min_sparse_otu_table.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__pycache__/parse.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__pycache__/err.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__pycache__/util.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__pycache__/exception.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__pycache__/table.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_subsample.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_transform.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_filter.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/assets copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/assets/exercise_cli.sh -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/assets copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/assets/exercise_api.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/assets copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_transform.pyx -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_subsample.pyx -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_filter.pyx -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/uc_processor.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_validator.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_ids.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_head.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_normalizer.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_subsetter.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/installation_informer.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_converter.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/metadata_exporter.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/util.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/metadata_adder.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_summarizer.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/installation_informer.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/metadata_adder.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/metadata_exporter.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_converter.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_head.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_ids.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_normalizer.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_subsetter.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_summarizer.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_validator.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/uc_processor.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/util.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__pycache__/test_util.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__pycache__/test_table.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__pycache__/test_parse.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__pycache__/test_err.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__pycache__/long_lines.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__ creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_validate_table.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_uc_processor.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_table_normalizer.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_table_converter.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_summarize_table.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_subset_table.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_show_install_info.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_add_metadata.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data/test.json -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data/test.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_add_metadata.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_show_install_info.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_subset_table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_summarize_table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_table_converter.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_table_normalizer.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_uc_processor.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_validate_table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/test_grp_metadata.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/test.json.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/test.json -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/test.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/no-contents.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/empty.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/edgecase_issue_952.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/bad_table.txt.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/bad_table.txt -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/long_lines.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_err.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_parse.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_util.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/err.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/exception.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/parse.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/util.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/assets/exercise_api.py to exercise_api.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/installation_informer.py to installation_informer.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/metadata_adder.py to metadata_adder.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/metadata_exporter.py to metadata_exporter.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_converter.py to table_converter.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_head.py to table_head.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_ids.py to table_ids.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_normalizer.py to table_normalizer.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_subsetter.py to table_subsetter.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_summarizer.py to table_summarizer.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_validator.py to table_validator.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/uc_processor.py to uc_processor.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/util.py to util.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_add_metadata.py to test_add_metadata.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_show_install_info.py to test_show_install_info.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_subset_table.py to test_subset_table.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_summarize_table.py to test_summarize_table.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_table_converter.py to test_table_converter.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_table_normalizer.py to test_table_normalizer.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_uc_processor.py to test_uc_processor.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_validate_table.py to test_validate_table.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/long_lines.py to long_lines.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_err.py to test_err.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_parse.py to test_parse.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_table.py to test_table.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_util.py to test_util.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/err.py to err.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/exception.py to exception.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/parse.py to parse.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/table.py to table.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/util.py to util.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__init__.py to __init__.cpython-313.pyc running install_egg_info Copying biom_format.egg-info to /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom_format-2.1.16.egg-info Skipping SOURCES.txt running install_scripts Installing biom script to /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/bin I: pybuild pybuild:334: dh_numpy3 mv debian/python3-biom-format.substvars.new debian/python3-biom-format.substvars find debian/python3-biom-format -name .coverage -delete make[1]: Leaving directory '/build/reproducible-path/python-biom-format-2.1.16' rm -f debian/python-biom-format-doc.debhelper.log debian/python3-biom-format.debhelper.log debian/rules override_dh_installdocs-indep make[1]: Entering directory '/build/reproducible-path/python-biom-format-2.1.16' dh_installdocs --indep dh_installdocs: warning: Cannot auto-detect main package for python-biom-format-doc. If the default is wrong, please use --doc-main-package install -m0755 -d debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc install -m0755 -d debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc cd './build/html/..' && find 'html' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/reproducible-path/python-biom-format-2.1.16/debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc chmod -R u\+rw,go=rX debian/python-biom-format-doc/usr/share/doc install -p -m0644 debian/copyright debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/copyright install -m0755 -d debian/python-biom-format-doc/usr/share/doc-base/ install -p -m0644 debian/python-biom-format-doc.doc-base debian/python-biom-format-doc/usr/share/doc-base/python-biom-format-doc.python-biom-format dh_sphinxdoc --indep ln -sf ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/sphinx_highlight.js ln -sf ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/doctools.js dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/copybutton.js ln -sf ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/searchtools.js ln -sf ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/language_data.js rm -rf debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/.doctrees rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/.buildinfo mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars make[1]: Leaving directory '/build/reproducible-path/python-biom-format-2.1.16' dh_installdocs -O--buildsystem=pybuild -Npython-biom-format-doc install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format cp --reflink=auto -a ./debian/README.test debian/python3-biom-format/usr/share/doc/python3-biom-format cp --reflink=auto -a ./debian/tests/run-unit-test debian/python3-biom-format/usr/share/doc/python3-biom-format chmod -R u\+rw,go=rX debian/python3-biom-format/usr/share/doc install -p -m0644 debian/copyright debian/python3-biom-format/usr/share/doc/python3-biom-format/copyright dh_sphinxdoc -O--buildsystem=pybuild dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/copybutton.js dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format install -p -m0644 debian/.debhelper/generated/python3-biom-format/dh_installchangelogs.dch.trimmed debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog.Debian install -p -m0644 ./ChangeLog.md debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog install -m0755 -d debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc install -p -m0644 debian/.debhelper/generated/python-biom-format-doc/dh_installchangelogs.dch.trimmed debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/changelog.Debian install -p -m0644 ./ChangeLog.md debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/changelog rm -f debian/python-biom-format-doc.debhelper.log debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/python-biom-format-2.1.16' dh_installexamples install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/min_sparse_otu_table.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/min_sparse_otu_table_hdf5.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/obs_md.txt debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/rich_sparse_otu_table.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/rich_sparse_otu_table_hdf5.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/rich_sparse_otu_table_hdf5_group_metadata.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/sam_md.txt debian/python3-biom-format/usr/share/doc/python3-biom-format/examples find debian -name "*.c" -delete find debian -name "*.pyx" -delete # move tests from Python3 package to examples package if [ ! -d biom/tests ] ; then \ mv `find debian/python*biom-format -name tests -type d` biom ; \ else \ find debian/python*biom-format -name tests -type d | xargs rm -rf ; \ fi make[1]: Leaving directory '/build/reproducible-path/python-biom-format-2.1.16' dh_installman -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/usr/share/man/man1/ install -p -m0644 ./debian/biom.1 debian/python3-biom-format/usr/share/man/man1/biom.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-biom-format/usr/share/man/man1/biom.1 mv debian/python3-biom-format/usr/share/man/man1/biom.1.dh-new debian/python3-biom-format/usr/share/man/man1/biom.1 chmod 0644 -- debian/python3-biom-format/usr/share/man/man1/biom.1 dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:180: version: 6.20250108 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:183: supported Python versions: 3.12,3.13 (default=3.13) D: dh_python3 debhelper:166: skipping package python-biom-format-doc (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:174: source=python-biom-format, binary packages=['python3-biom-format'] D: dh_python3 dh_python3:205: processing package python3-biom-format... D: dh_python3 fs:50: moving files from debian/python3-biom-format/usr/lib/python3.12/dist-packages to debian/python3-biom-format/usr/lib/python3/dist-packages/ D: dh_python3 fs:50: moving files from debian/python3-biom-format/usr/lib/python3.13/dist-packages to debian/python3-biom-format/usr/lib/python3/dist-packages/ D: dh_python3 fs:249: removing dist-packages/.pytest_cache D: dh_python3 fs:338: package python3-biom-format details = {'requires.txt': {'debian/python3-biom-format/usr/lib/python3/dist-packages/biom_format-2.1.16.egg-info/requires.txt'}, 'egg-info': {'debian/python3-biom-format/usr/lib/python3/dist-packages/biom_format-2.1.16.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.12'), Version('3.13')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-biom-format D: dh_python3 pydist:175: trying to find dependency for click (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for h5py (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for numpy>=1.9.2 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for pandas>=0.20.0 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for scipy>=1.3.1 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 depends:253: D={'python3-pandas', 'python3-numpy', 'python3 (>= 3.12~)', 'python3:any', 'python3-scipy', 'python3-click', 'python3 (<< 3.14)', 'python3-h5py'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/sphinx_highlight.js ln -s ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/sphinx_highlight.js rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/doctools.js ln -s ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/doctools.js rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/searchtools.js ln -s ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/searchtools.js rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/language_data.js ln -s ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/language_data.js dh_strip_nondeterminism -O--buildsystem=pybuild Using 1716835050 as canonical time Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/plus.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/minus.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/bullet_orange.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/file.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/biom-format.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/bg-page.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/alert_warning_32.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_images/biom-format.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/alert_info_32.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=pybuild cd debian/python3-biom-format cd debian/python-biom-format-doc chmod a-x usr/share/doc/python-biom-format-doc/changelog usr/share/doc/python-biom-format-doc/changelog.Debian chmod a-x usr/share/doc/python3-biom-format/changelog usr/share/doc/python3-biom-format/changelog.Debian usr/share/man/man1/biom.1 gzip -9nf usr/share/doc/python-biom-format-doc/changelog usr/share/doc/python-biom-format-doc/changelog.Debian gzip -9nf usr/share/doc/python3-biom-format/changelog usr/share/doc/python3-biom-format/changelog.Debian usr/share/man/man1/biom.1 cd '/build/reproducible-path/python-biom-format-2.1.16' cd '/build/reproducible-path/python-biom-format-2.1.16' rm -f debian/python-biom-format-doc.debhelper.log debian/python3-biom-format.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/python-biom-format-2.1.16' dh_fixperms find debian/python3-biom-format ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-biom-format-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-biom-format-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/python-biom-format-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biom-format/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biom-format/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biom-format/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python-biom-format-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-biom-format/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biom-format-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biom-format -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biom-format/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/python3-biom-format/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian -name exercise_cli.sh -exec chmod +x \{\} \; make[1]: Leaving directory '/build/reproducible-path/python-biom-format-2.1.16' dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/usr/lib/debug/.dwz/aarch64-linux-gnu dwz -mdebian/python3-biom-format/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-biom-format.debug -M/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-biom-format.debug -- debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-312-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-313-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-312-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-313-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-312-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-313-aarch64-linux-gnu.so objcopy --compress-debug-sections debian/python3-biom-format/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-biom-format.debug chmod 0644 -- debian/python3-biom-format/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-biom-format.debug dh_strip -a -O--buildsystem=pybuild install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/48 objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/48/c92d283bb34db5e8c04dfe5632db28af9e103c.debug chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/48/c92d283bb34db5e8c04dfe5632db28af9e103c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/48/c92d283bb34db5e8c04dfe5632db28af9e103c.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/2f objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/2f/2aaae1dca22db0c7a63ff2fdb55e5fcaf76ca0.debug chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/2f/2aaae1dca22db0c7a63ff2fdb55e5fcaf76ca0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-313-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/2f/2aaae1dca22db0c7a63ff2fdb55e5fcaf76ca0.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-313-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/15 objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/15/ae4f68d566d3231d2829af358485d30f0235be.debug chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/15/ae4f68d566d3231d2829af358485d30f0235be.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/15/ae4f68d566d3231d2829af358485d30f0235be.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/18 objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/18/77bdee58e5b42e266699ddf9029b3bab1d7a21.debug chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/18/77bdee58e5b42e266699ddf9029b3bab1d7a21.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-313-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/18/77bdee58e5b42e266699ddf9029b3bab1d7a21.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-313-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/08 objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/08/cb274655789d7259a5701e936d9bff6334f32b.debug chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/08/cb274655789d7259a5701e936d9bff6334f32b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/08/cb274655789d7259a5701e936d9bff6334f32b.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/d3 objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/d3/820f286439385d9a6a038ad2ecfc44140dda69.debug chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/d3/820f286439385d9a6a038ad2ecfc44140dda69.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-313-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/d3/820f286439385d9a6a038ad2ecfc44140dda69.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-313-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-biom-format/usr/lib/debug/.dwz/aarch64-linux-gnu debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-biom-format/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-biom-format/usr/lib/debug install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/share/doc ln -s python3-biom-format debian/.debhelper/python3-biom-format/dbgsym-root/usr/share/doc/python3-biom-format-dbgsym install -m0755 -d debian/.debhelper/python3-biom-format dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/python3-biom-format/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/DEBIAN dpkg-shlibdeps -Tdebian/python3-biom-format.substvars debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-312-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-313-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-312-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-313-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-312-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-313-aarch64-linux-gnu.so dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-biom-format/DEBIAN/postinst cat debian/python3-biom-format.postinst.debhelper >> debian/python3-biom-format/DEBIAN/postinst chmod 0755 -- debian/python3-biom-format/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-biom-format/DEBIAN/prerm cat debian/python3-biom-format.prerm.debhelper >> debian/python3-biom-format/DEBIAN/prerm chmod 0755 -- debian/python3-biom-format/DEBIAN/prerm install -m0755 -d debian/python-biom-format-doc/DEBIAN dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/DEBIAN echo misc:Depends= >> debian/python3-biom-format.substvars echo misc:Pre-Depends= >> debian/python3-biom-format.substvars install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-biom-format -ldebian/changelog -Tdebian/python3-biom-format.substvars -cdebian/control -Pdebian/.debhelper/python3-biom-format/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-biom-format-dbgsym "-DDepends=python3-biom-format (= \${binary:Version})" "-DDescription=debug symbols for python3-biom-format" "-DBuild-Ids=08cb274655789d7259a5701e936d9bff6334f32b 15ae4f68d566d3231d2829af358485d30f0235be 1877bdee58e5b42e266699ddf9029b3bab1d7a21 2f2aaae1dca22db0c7a63ff2fdb55e5fcaf76ca0 48c92d283bb34db5e8c04dfe5632db28af9e103c d3820f286439385d9a6a038ad2ecfc44140dda69" -DSection=debug -UMulti-Arch -UReplaces -UBreaks install -m0755 -d debian/python-biom-format-doc/DEBIAN echo misc:Depends= >> debian/python-biom-format-doc.substvars echo misc:Pre-Depends= >> debian/python-biom-format-doc.substvars dpkg-gencontrol -ppython-biom-format-doc -ldebian/changelog -Tdebian/python-biom-format-doc.substvars -cdebian/control -Pdebian/python-biom-format-doc dpkg-gencontrol: warning: package python-biom-format-doc: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package python-biom-format-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined chmod 0644 -- debian/python-biom-format-doc/DEBIAN/control chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-biom-format -ldebian/changelog -Tdebian/python3-biom-format.substvars -cdebian/control -Pdebian/python3-biom-format chmod 0644 -- debian/python3-biom-format/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/DEBIAN install -m0755 -d debian/python-biom-format-doc/DEBIAN cd debian/python-biom-format-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python3-biom-format >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python-biom-format-doc/DEBIAN/md5sums chmod 0644 -- debian/python3-biom-format/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN cd debian/.debhelper/python3-biom-format/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-biom-format .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-biom-format/dbgsym-root .. dpkg-deb --root-owner-group --build debian/python-biom-format-doc .. dpkg-deb: building package 'python3-biom-format' in '../python3-biom-format_2.1.16-1_arm64.deb'. dpkg-deb: building package 'python3-biom-format-dbgsym' in '../python3-biom-format-dbgsym_2.1.16-1_arm64.deb'. dpkg-deb: building package 'python-biom-format-doc' in '../python-biom-format-doc_2.1.16-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-biom-format_2.1.16-1_arm64.buildinfo dpkg-genchanges --build=binary -O../python-biom-format_2.1.16-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3219725 and its subdirectories I: Current time: Fri Mar 27 08:01:28 -12 2026 I: pbuilder-time-stamp: 1774641688 Sat Feb 22 13:38:30 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Sat Feb 22 13:38:30 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Sat Feb 22 13:38:30 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Sat Feb 22 13:38:30 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-2b2Q1E' ==================================================================================== Sat Feb 22 13:38:31 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "2 python-biom-format trixie /srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly 2.1.16-1" as arguments. Sat Feb 22 13:38:31 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-A7jiC90J" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Feb 22 13:38:31 UTC 2025 I: Downloading source for trixie/python-biom-format=2.1.16-1 Reading package lists... NOTICE: 'python-biom-format' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-biom-format.git Please use: git clone https://salsa.debian.org/med-team/python-biom-format.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 11.9 MB of source archives. Get:1 http://deb.debian.org/debian trixie/main python-biom-format 2.1.16-1 (dsc) [2628 B] Get:2 http://deb.debian.org/debian trixie/main python-biom-format 2.1.16-1 (tar) [11.9 MB] Get:3 http://deb.debian.org/debian trixie/main python-biom-format 2.1.16-1 (diff) [11.6 kB] Fetched 11.9 MB in 0s (134 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'python-biom-format' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-biom-format.git Please use: git clone https://salsa.debian.org/med-team/python-biom-format.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 11.9 MB of source archives. Get:1 http://deb.debian.org/debian trixie/main python-biom-format 2.1.16-1 (dsc) [2628 B] Get:2 http://deb.debian.org/debian trixie/main python-biom-format 2.1.16-1 (tar) [11.9 MB] Get:3 http://deb.debian.org/debian trixie/main python-biom-format 2.1.16-1 (diff) [11.6 kB] Fetched 11.9 MB in 0s (134 MB/s) Download complete and in download only mode ============================================================================= Re-Building python-biom-format in trixie on arm64 on codethink04-arm64 now. Date: Sat Feb 22 13:38:32 GMT 2025 Date UTC: Sat Feb 22 13:38:32 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly/pbuilderrc_8ra0 + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' python-biom-format = debian-installer -o python-biom-format = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' python-biom-format = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly/pbuilderrc_8ra0 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly/b2 --logfile b2/build.log python-biom-format_2.1.16-1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Feb 23 03:38:32 +14 2025 I: pbuilder-time-stamp: 1740231512 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-biom-format_2.1.16-1.dsc] I: copying [./python-biom-format_2.1.16.orig.tar.gz] I: copying [./python-biom-format_2.1.16-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-biom-format_2.1.16-1.dsc: unsupported subcommand dpkg-source: info: extracting python-biom-format in python-biom-format-2.1.16 dpkg-source: info: unpacking python-biom-format_2.1.16.orig.tar.gz dpkg-source: info: unpacking python-biom-format_2.1.16-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying ignore_local_dist-packages.patch dpkg-source: info: applying no-web-adds.patch dpkg-source: info: applying fix_future_import.patch dpkg-source: info: applying sphinx_1.6.patch dpkg-source: info: applying posix_shell.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2398783/tmp/hooks/D01_modify_environment starting debug: Running on codethink04-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Feb 22 13:38 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2398783/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2398783/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=d5a0882a48b0488ab076058ac5ae8984 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2398783 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly/pbuilderrc_8ra0 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly/b2 --logfile b2/build.log python-biom-format_2.1.16-1.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2398783/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, help2man, bash-completion, cython3, python3-all-dev, python3-click, python3-h5py, python3-numpy, python3-numpydoc, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx, python3-matplotlib, python3-pytest, python3-pytest-cov dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19972 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on bash-completion; however: Package bash-completion is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-click; however: Package python3-click is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-numpydoc; however: Package python3-numpydoc is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-cov; however: Package python3-pytest-cov is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bash-completion{a} blt{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgpg-error0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhdf5-310{a} libhdf5-hl-310{a} libicu72{a} libidn2-0{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-hotkeys{a} libjs-jquery-isonscreen{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-throttle-debounce{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap2{a} liblerc4{a} liblocale-gettext-perl{a} liblzf1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libnsl2{a} libopenjp2-7{a} libp11-kit0{a} libpipeline1{a} libpng16-16t64{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libsz2{a} libtasn1-6{a} libtcl8.6{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python-babel-localedata{a} python-matplotlib-data{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-attr{a} python3-autocommand{a} python3-babel{a} python3-brotli{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-contourpy{a} python3-coverage{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-defusedxml{a} python3-dev{a} python3-docutils{a} python3-fonttools{a} python3-fs{a} python3-h5py{a} python3-h5py-serial{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-markupsafe{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-numpydoc{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-pygments{a} python3-pyparsing{a} python3-pytest{a} python3-pytest-cov{a} python3-pytz{a} python3-requests{a} python3-roman{a} python3-scipy{a} python3-setuptools{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sympy{a} python3-tabulate{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-urllib3{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.12-tk{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libjson-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libsasl2-modules lynx publicsuffix python3-bottleneck python3-bs4 python3-cssselect python3-html5lib python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pooch python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 226 newly installed, 0 to remove and 0 not upgraded. Need to get 143 MB of archives. After unpacking 691 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 liblocale-gettext-perl arm64 1.07-7+b1 [15.2 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libpython3.13-minimal arm64 3.13.2-1 [853 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3.13-minimal arm64 3.13.2-1 [1997 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.13.1-2 [27.0 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 tzdata all 2025a-2 [259 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 libpython3.13-stdlib arm64 3.13.2-1 [1914 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 python3.13 arm64 3.13.2-1 [745 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.13.1-2 [9952 B] Get: 15 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.13.1-2 [28.0 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.9-1 [810 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.9-1 [1941 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 sgml-base all 1.31 [15.4 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 bash-completion all 1:2.16.0-7 [319 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 openssl arm64 3.4.1-1 [1390 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 ca-certificates all 20241223 [164 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-3 [92.0 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-3 [862 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [984 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.46-4 [276 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-2 [317 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-2 [386 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b4 [27.2 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libxft2 arm64 2.3.6-1+b4 [51.6 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+24 [217 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libxss1 arm64 1:1.2.3-1+b3 [17.1 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libtk8.6 arm64 8.6.16-1 [741 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7+b1 [538 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 blt arm64 2.5.3+dfsg-7+b1 [6344 B] Get: 58 http://deb.debian.org/debian trixie/main arm64 cython3 arm64 3.0.11+dfsg-2 [2726 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-3 [539 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 65 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.1 [920 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 80 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 75.6.0-1 [720 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20250108 [113 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 xml-core all 0.19 [20.1 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 fonts-lyx all 2.4.3-1 [190 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 help2man arm64 1.49.3+b1 [198 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libaec0 arm64 1.1.3-1+b1 [22.5 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.1-2 [104 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 96 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.12.1-2 [340 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.23-1+b1 [42.5 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 libexpat1-dev arm64 2.6.4-1 [143 kB] Get: 113 http://deb.debian.org/debian trixie/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB] Get: 114 http://deb.debian.org/debian trixie/main arm64 libgpg-error0 arm64 1.51-3 [78.5 kB] Get: 115 http://deb.debian.org/debian trixie/main arm64 libgcrypt20 arm64 1.11.0-7 [742 kB] Get: 116 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-16 [361 kB] Get: 117 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.83.3-2 [1421 kB] Get: 118 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 119 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 10.2.0-1 [443 kB] Get: 120 http://deb.debian.org/debian trixie/main arm64 libsz2 arm64 1.1.3-1+b1 [8044 B] Get: 121 http://deb.debian.org/debian trixie/main arm64 libhdf5-310 arm64 1.14.5+repack-3 [1155 kB] Get: 122 http://deb.debian.org/debian trixie/main arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [66.1 kB] Get: 123 http://deb.debian.org/debian trixie/main arm64 libimagequant0 arm64 2.18.0-1+b2 [34.6 kB] Get: 124 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 125 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 126 http://deb.debian.org/debian trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 127 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-hotkeys all 0.2.0-1 [12.6 kB] Get: 128 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-isonscreen all 1.2.0-1.1 [3196 B] Get: 129 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-metadata all 12-4 [6532 B] Get: 130 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [184 kB] Get: 131 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.2 kB] Get: 132 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 133 http://deb.debian.org/debian trixie/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 134 http://deb.debian.org/debian trixie/main arm64 libjs-sphinxdoc all 8.1.3-4 [30.4 kB] Get: 135 http://deb.debian.org/debian trixie/main arm64 libjson-perl all 4.10000-1 [87.5 kB] Get: 136 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.1-2 [1819 kB] Get: 137 http://deb.debian.org/debian trixie/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b2 [25.6 kB] Get: 138 http://deb.debian.org/debian trixie/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 139 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 140 http://deb.debian.org/debian trixie/main arm64 liblzf1 arm64 3.6-4+b3 [10.1 kB] Get: 141 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 142 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 143 http://deb.debian.org/debian trixie/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 144 http://deb.debian.org/debian trixie/main arm64 libopenjp2-7 arm64 2.5.3-1 [189 kB] Get: 145 http://deb.debian.org/debian trixie/main arm64 libpython3.13 arm64 3.13.2-1 [1970 kB] Get: 146 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 147 http://deb.debian.org/debian trixie/main arm64 libpython3.13-dev arm64 3.13.2-1 [4678 kB] Get: 148 http://deb.debian.org/debian trixie/main arm64 libpython3-dev arm64 3.13.1-2 [10.2 kB] Get: 149 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.9-1 [1909 kB] Get: 150 http://deb.debian.org/debian trixie/main arm64 libpython3.12t64 arm64 3.12.9-1 [1986 kB] Get: 151 http://deb.debian.org/debian trixie/main arm64 libpython3.12-dev arm64 3.12.9-1 [4796 kB] Get: 152 http://deb.debian.org/debian trixie/main arm64 libpython3-all-dev arm64 3.13.1-2 [1072 B] Get: 153 http://deb.debian.org/debian trixie/main arm64 libqhull-r8.0 arm64 2020.2-6+b2 [229 kB] Get: 154 http://deb.debian.org/debian trixie/main arm64 libraqm0 arm64 0.10.2-1 [13.6 kB] Get: 155 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 156 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 157 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 158 http://deb.debian.org/debian trixie/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [113 kB] Get: 159 http://deb.debian.org/debian trixie/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB] Get: 160 http://deb.debian.org/debian trixie/main arm64 libxslt1.1 arm64 1.1.35-1.1+b1 [222 kB] Get: 161 http://deb.debian.org/debian trixie/main arm64 python-babel-localedata all 2.17.0-1 [6050 kB] Get: 162 http://deb.debian.org/debian trixie/main arm64 python-matplotlib-data all 3.8.3-3 [2731 kB] Get: 163 http://deb.debian.org/debian trixie/main arm64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 164 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.9-1 [681 kB] Get: 165 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.13.1-2 [1056 B] Get: 166 http://deb.debian.org/debian trixie/main arm64 python3.13-dev arm64 3.13.2-1 [505 kB] Get: 167 http://deb.debian.org/debian trixie/main arm64 python3-dev arm64 3.13.1-2 [26.1 kB] Get: 168 http://deb.debian.org/debian trixie/main arm64 python3.12-dev arm64 3.12.9-1 [505 kB] Get: 169 http://deb.debian.org/debian trixie/main arm64 python3-all-dev arm64 3.13.1-2 [1076 B] Get: 170 http://deb.debian.org/debian trixie/main arm64 python3-attr all 25.1.0-1 [68.7 kB] Get: 171 http://deb.debian.org/debian trixie/main arm64 python3-babel all 2.17.0-1 [117 kB] Get: 172 http://deb.debian.org/debian trixie/main arm64 python3-brotli arm64 1.1.0-2+b6 [306 kB] Get: 173 http://deb.debian.org/debian trixie/main arm64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 174 http://deb.debian.org/debian trixie/main arm64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 175 http://deb.debian.org/debian trixie/main arm64 python3-charset-normalizer arm64 3.4.1-1 [132 kB] Get: 176 http://deb.debian.org/debian trixie/main arm64 python3-click all 8.1.8-1 [95.2 kB] Get: 177 http://deb.debian.org/debian trixie/main arm64 python3-numpy arm64 1:1.26.4+ds-13 [3815 kB] Get: 178 http://deb.debian.org/debian trixie/main arm64 python3-contourpy arm64 1.3.1-1 [237 kB] Get: 179 http://deb.debian.org/debian trixie/main arm64 python3-coverage arm64 7.6.0+dfsg1-2+b1 [177 kB] Get: 180 http://deb.debian.org/debian trixie/main arm64 python3-cycler all 0.12.1-1 [9496 B] Get: 181 http://deb.debian.org/debian trixie/main arm64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 182 http://deb.debian.org/debian trixie/main arm64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 183 http://deb.debian.org/debian trixie/main arm64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get: 184 http://deb.debian.org/debian trixie/main arm64 python3-roman all 5.0-1 [10.6 kB] Get: 185 http://deb.debian.org/debian trixie/main arm64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get: 186 http://deb.debian.org/debian trixie/main arm64 python3-pytz all 2025.1-3 [150 kB] Get: 187 http://deb.debian.org/debian trixie/main arm64 python3-tz all 2025.1-3 [4004 B] Get: 188 http://deb.debian.org/debian trixie/main arm64 python3-platformdirs all 4.3.6-1 [16.6 kB] Get: 189 http://deb.debian.org/debian trixie/main arm64 python3-fs all 2.4.16-6 [95.1 kB] Get: 190 http://deb.debian.org/debian trixie/main arm64 python3-lxml arm64 5.3.1-1 [1428 kB] Get: 191 http://deb.debian.org/debian trixie/main arm64 python3-lz4 arm64 4.4.0+dfsg-1 [25.6 kB] Get: 192 http://deb.debian.org/debian trixie/main arm64 python3-scipy arm64 1.14.1-4 [18.5 MB] Get: 193 http://deb.debian.org/debian trixie/main arm64 python3-mpmath all 1.3.0-1 [419 kB] Get: 194 http://deb.debian.org/debian trixie/main arm64 python3-sympy all 1.13.3-1 [4147 kB] Get: 195 http://deb.debian.org/debian trixie/main arm64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB] Get: 196 http://deb.debian.org/debian trixie/main arm64 unicode-data all 15.1.0-1 [8547 kB] Get: 197 http://deb.debian.org/debian trixie/main arm64 python3-fonttools arm64 4.55.3-2 [1501 kB] Get: 198 http://deb.debian.org/debian trixie/main arm64 python3-h5py-serial arm64 3.12.1-1+b2 [1246 kB] Get: 199 http://deb.debian.org/debian trixie/main arm64 python3-h5py all 3.12.1-1 [15.0 kB] Get: 200 http://deb.debian.org/debian trixie/main arm64 python3-idna all 3.10-1 [42.0 kB] Get: 201 http://deb.debian.org/debian trixie/main arm64 python3-imagesize all 1.4.1-1 [6688 B] Get: 202 http://deb.debian.org/debian trixie/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 203 http://deb.debian.org/debian trixie/main arm64 python3-markupsafe arm64 2.1.5-1+b3 [14.0 kB] Get: 204 http://deb.debian.org/debian trixie/main arm64 python3-jinja2 all 3.1.5-2 [107 kB] Get: 205 http://deb.debian.org/debian trixie/main arm64 python3-kiwisolver arm64 1.4.7-3 [71.5 kB] Get: 206 http://deb.debian.org/debian trixie/main arm64 python3-pil arm64 11.1.0-5 [514 kB] Get: 207 http://deb.debian.org/debian trixie/main arm64 python3.12-tk arm64 3.12.9-1 [111 kB] Get: 208 http://deb.debian.org/debian trixie/main arm64 python3.13-tk arm64 3.13.2-1 [102 kB] Get: 209 http://deb.debian.org/debian trixie/main arm64 python3-tk arm64 3.13.1-1 [9464 B] Get: 210 http://deb.debian.org/debian trixie/main arm64 python3-pil.imagetk arm64 11.1.0-5 [81.6 kB] Get: 211 http://deb.debian.org/debian trixie/main arm64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 212 http://deb.debian.org/debian trixie/main arm64 python3-packaging all 24.2-1 [55.3 kB] Get: 213 http://deb.debian.org/debian trixie/main arm64 python3-matplotlib arm64 3.8.3-3+b2 [5583 kB] Get: 214 http://deb.debian.org/debian trixie/main arm64 sphinx-common all 8.1.3-4 [616 kB] Get: 215 http://deb.debian.org/debian trixie/main arm64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 216 http://deb.debian.org/debian trixie/main arm64 python3-urllib3 all 2.3.0-1 [114 kB] Get: 217 http://deb.debian.org/debian trixie/main arm64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 218 http://deb.debian.org/debian trixie/main arm64 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 219 http://deb.debian.org/debian trixie/main arm64 python3-sphinx all 8.1.3-4 [468 kB] Get: 220 http://deb.debian.org/debian trixie/main arm64 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 221 http://deb.debian.org/debian trixie/main arm64 python3-numpydoc all 1.8.0-1 [51.4 kB] Get: 222 http://deb.debian.org/debian trixie/main arm64 python3-pandas-lib arm64 2.2.3+dfsg-8 [6029 kB] Get: 223 http://deb.debian.org/debian trixie/main arm64 python3-pandas all 2.2.3+dfsg-8 [3097 kB] Get: 224 http://deb.debian.org/debian trixie/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 225 http://deb.debian.org/debian trixie/main arm64 python3-pytest all 8.3.4-1 [250 kB] Get: 226 http://deb.debian.org/debian trixie/main arm64 python3-pytest-cov all 5.0.0-1 [26.8 kB] Fetched 143 MB in 1s (246 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19972 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-7+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.2-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.2-1) ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_arm64.deb ... Unpacking python3.13 (3.13.2-1) ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../128-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package libopenjp2-7:arm64. Preparing to unpack .../129-libopenjp2-7_2.5.3-1_arm64.deb ... Unpacking libopenjp2-7:arm64 (2.5.3-1) ... Selecting previously unselected package libpython3.13:arm64. Preparing to unpack .../130-libpython3.13_3.13.2-1_arm64.deb ... Unpacking libpython3.13:arm64 (3.13.2-1) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../131-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2398783/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/2398783/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/python-biom-format-2.1.16/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-biom-format_2.1.16-1_source.changes dpkg-buildpackage: info: source package python-biom-format dpkg-buildpackage: info: source version 2.1.16-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with bash-completion,sphinxdoc --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p "3.12 3.13" I: pybuild base:311: python3.12 setup.py clean /build/reproducible-path/python-biom-format-2.1.16/setup.py:15: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as TestCommand /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-biom-format-2.1.16/biom/_filter.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-biom-format-2.1.16/biom/_subsample.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-biom-format-2.1.16/biom/_transform.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling biom/_filter.pyx because it changed. Compiling biom/_transform.pyx because it changed. Compiling biom/_subsample.pyx because it changed. [1/3] Cythonizing biom/_filter.pyx [2/3] Cythonizing biom/_subsample.pyx [3/3] Cythonizing biom/_transform.pyx /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running clean removing '/build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.13 setup.py clean /build/reproducible-path/python-biom-format-2.1.16/setup.py:15: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as TestCommand /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running clean removing '/build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-biom-format.substvars debian/python-biom-format-doc.substvars ./biom/_filter.c ./biom/_subsample.c ./biom/_transform.c debian/files rm -fr -- debian/python3-biom-format/ debian/tmp/ debian/python-biom-format-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --with bash-completion,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p "3.12 3.13" I: pybuild base:311: python3.12 setup.py config /build/reproducible-path/python-biom-format-2.1.16/setup.py:15: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as TestCommand /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-biom-format-2.1.16/biom/_filter.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-biom-format-2.1.16/biom/_subsample.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-biom-format-2.1.16/biom/_transform.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling biom/_filter.pyx because it changed. Compiling biom/_transform.pyx because it changed. Compiling biom/_subsample.pyx because it changed. [1/3] Cythonizing biom/_filter.pyx [2/3] Cythonizing biom/_subsample.pyx [3/3] Cythonizing biom/_transform.pyx /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running config I: pybuild base:311: python3.13 setup.py config /build/reproducible-path/python-biom-format-2.1.16/setup.py:15: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as TestCommand /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/python-biom-format-2.1.16' # arch USE_CYTHON=true dh_auto_build pybuild --build -i python{version} -p "3.12 3.13" I: pybuild base:311: /usr/bin/python3.12 setup.py build /build/reproducible-path/python-biom-format-2.1.16/setup.py:15: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as TestCommand /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running build running build_py creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom copying biom/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom copying biom/util.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom copying biom/table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom copying biom/parse.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom copying biom/exception.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom copying biom/err.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests copying biom/tests/test_util.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests copying biom/tests/test_table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests copying biom/tests/test_parse.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests copying biom/tests/test_err.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests copying biom/tests/long_lines.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests copying biom/tests/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/util.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/uc_processor.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/table_validator.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/table_summarizer.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/table_subsetter.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/table_normalizer.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/table_ids.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/table_head.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/table_converter.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/metadata_exporter.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/metadata_adder.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/installation_informer.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli copying biom/cli/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_validate_table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_uc_processor.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_table_normalizer.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_table_converter.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_summarize_table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_subset_table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_show_install_info.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_add_metadata.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli running egg_info creating biom_format.egg-info writing biom_format.egg-info/PKG-INFO writing dependency_links to biom_format.egg-info/dependency_links.txt writing entry points to biom_format.egg-info/entry_points.txt writing requirements to biom_format.egg-info/requires.txt writing top-level names to biom_format.egg-info/top_level.txt writing manifest file 'biom_format.egg-info/SOURCES.txt' dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'support_files' warning: no directories found matching 'tests/test_data' no previously-included directories found matching 'docs/_build' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution adding license file 'COPYING.txt' writing manifest file 'biom_format.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.assets' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.assets' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.assets' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.assets' to be distributed and are already explicitly excluding 'biom.assets' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.tests.bench_tables' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.bench_tables' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.tests.bench_tables' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.tests.bench_tables' to be distributed and are already explicitly excluding 'biom.tests.bench_tables' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.tests.test_cli.test_data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.test_cli.test_data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.tests.test_cli.test_data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.tests.test_cli.test_data' to be distributed and are already explicitly excluding 'biom.tests.test_cli.test_data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying biom/_filter.pyx -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom copying biom/_subsample.pyx -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom copying biom/_transform.pyx -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/assets copying biom/assets/exercise_api.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/assets copying biom/assets/exercise_cli.sh -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/assets creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables copying biom/tests/test_data/bad_table.txt -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/bad_table.txt.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/edgecase_issue_952.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/empty.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/no-contents.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.json -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.json.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test_grp_metadata.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/test.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/test.json -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data running build_ext building 'biom._filter' extension creating build/temp.linux-aarch64-cpython-312/biom aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c biom/_filter.c -o build/temp.linux-aarch64-cpython-312/biom/_filter.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from biom/_filter.c:1249: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/biom/_filter.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/_filter.cpython-312-aarch64-linux-gnu.so building 'biom._transform' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c biom/_transform.c -o build/temp.linux-aarch64-cpython-312/biom/_transform.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from biom/_transform.c:1249: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/biom/_transform.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/_transform.cpython-312-aarch64-linux-gnu.so building 'biom._subsample' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c biom/_subsample.c -o build/temp.linux-aarch64-cpython-312/biom/_subsample.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from biom/_subsample.c:1249: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/biom/_subsample.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/_subsample.cpython-312-aarch64-linux-gnu.so I: pybuild base:311: /usr/bin/python3 setup.py build /build/reproducible-path/python-biom-format-2.1.16/setup.py:15: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as TestCommand /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running build running build_py creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom copying biom/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom copying biom/util.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom copying biom/table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom copying biom/parse.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom copying biom/exception.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom copying biom/err.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests copying biom/tests/test_util.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests copying biom/tests/test_table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests copying biom/tests/test_parse.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests copying biom/tests/test_err.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests copying biom/tests/long_lines.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests copying biom/tests/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/util.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/uc_processor.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/table_validator.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/table_summarizer.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/table_subsetter.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/table_normalizer.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/table_ids.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/table_head.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/table_converter.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/metadata_exporter.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/metadata_adder.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/installation_informer.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli copying biom/cli/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_validate_table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_uc_processor.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_table_normalizer.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_table_converter.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_summarize_table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_subset_table.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_show_install_info.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/test_add_metadata.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli copying biom/tests/test_cli/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli running egg_info writing biom_format.egg-info/PKG-INFO writing dependency_links to biom_format.egg-info/dependency_links.txt writing entry points to biom_format.egg-info/entry_points.txt writing requirements to biom_format.egg-info/requires.txt writing top-level names to biom_format.egg-info/top_level.txt dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'support_files' warning: no directories found matching 'tests/test_data' no previously-included directories found matching 'docs/_build' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution adding license file 'COPYING.txt' writing manifest file 'biom_format.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.assets' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.assets' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.assets' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.assets' to be distributed and are already explicitly excluding 'biom.assets' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.tests.bench_tables' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.bench_tables' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.tests.bench_tables' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.tests.bench_tables' to be distributed and are already explicitly excluding 'biom.tests.bench_tables' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.tests.test_cli.test_data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.test_cli.test_data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.tests.test_cli.test_data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.tests.test_cli.test_data' to be distributed and are already explicitly excluding 'biom.tests.test_cli.test_data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying biom/_filter.pyx -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom copying biom/_subsample.pyx -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom copying biom/_transform.pyx -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/assets copying biom/assets/exercise_api.py -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/assets copying biom/assets/exercise_cli.sh -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/assets creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables copying biom/tests/test_data/bad_table.txt -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/bad_table.txt.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/edgecase_issue_952.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/empty.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/no-contents.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.json -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test.json.gz -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data copying biom/tests/test_data/test_grp_metadata.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data creating /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/test.biom -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/test.json -> /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data running build_ext building 'biom._filter' extension creating build/temp.linux-aarch64-cpython-313/biom aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c biom/_filter.c -o build/temp.linux-aarch64-cpython-313/biom/_filter.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from biom/_filter.c:1249: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/biom/_filter.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_filter.cpython-313-aarch64-linux-gnu.so building 'biom._transform' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c biom/_transform.c -o build/temp.linux-aarch64-cpython-313/biom/_transform.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from biom/_transform.c:1249: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/biom/_transform.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_transform.cpython-313-aarch64-linux-gnu.so building 'biom._subsample' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c biom/_subsample.c -o build/temp.linux-aarch64-cpython-313/biom/_subsample.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from biom/_subsample.c:1249: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biom-format-2.1.16=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/biom/_subsample.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_subsample.cpython-313-aarch64-linux-gnu.so # indep: PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b html doc build/html Running Sphinx v8.1.3 loading translations [en]... done making output directory... done Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. [autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst WARNING: Failed to import biom.table. Possible hints: * KeyError: 'biom' * ModuleNotFoundError: No module named 'biom._filter' WARNING: Failed to import biom. Possible hints: * KeyError: 'biom' * ModuleNotFoundError: No module named 'biom._filter' building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 12 source files that are out of date updating environment: [new config] 12 added, 0 changed, 0 removed reading sources... [ 8%] BIOM_LICENSE reading sources... [ 17%] documentation/adding_metadata reading sources... [ 25%] documentation/biom_conversion reading sources... [ 33%] documentation/biom_format reading sources... [ 42%] documentation/format_versions/biom-1.0 reading sources... [ 50%] documentation/format_versions/biom-2.0 reading sources... [ 58%] documentation/format_versions/biom-2.1 reading sources... [ 67%] documentation/index reading sources... [ 75%] documentation/quick_usage_examples reading sources... [ 83%] documentation/summarizing_biom_tables reading sources... [ 92%] documentation/table_objects reading sources... [100%] index WARNING: autodoc: failed to import module 'biom'; the following exception was raised: No module named 'biom._filter' [autodoc.import_object] WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised: No module named 'biom._filter' [autodoc.import_object] looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying static files... Writing evaluated template result to /build/reproducible-path/python-biom-format-2.1.16/build/html/_static/language_data.js Writing evaluated template result to /build/reproducible-path/python-biom-format-2.1.16/build/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/python-biom-format-2.1.16/build/html/_static/basic.css Writing evaluated template result to /build/reproducible-path/python-biom-format-2.1.16/build/html/_static/haiku.css copying static files: done copying extra files... copying extra files: done copying assets: done writing output... [ 8%] BIOM_LICENSE writing output... [ 17%] documentation/adding_metadata writing output... [ 25%] documentation/biom_conversion writing output... [ 33%] documentation/biom_format writing output... [ 42%] documentation/format_versions/biom-1.0 writing output... [ 50%] documentation/format_versions/biom-2.0 writing output... [ 58%] documentation/format_versions/biom-2.1 writing output... [ 67%] documentation/index writing output... [ 75%] documentation/quick_usage_examples writing output... [ 83%] documentation/summarizing_biom_tables writing output... [ 92%] documentation/table_objects writing output... [100%] index /build/reproducible-path/python-biom-format-2.1.16/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated [toc.no_title] /build/reproducible-path/python-biom-format-2.1.16/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated [toc.no_title] /build/reproducible-path/python-biom-format-2.1.16/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/quick_usage_examples' that doesn't have a title: no link will be generated [toc.no_title] /build/reproducible-path/python-biom-format-2.1.16/doc/documentation/index.rst:11: WARNING: toctree contains reference to document 'documentation/table_objects' that doesn't have a title: no link will be generated [toc.no_title] generating indices... done writing additional pages... search done copying images... [100%] _static/biom-format.png dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 8 warnings. The HTML pages are in build/html. PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -b man doc build/man Running Sphinx v8.1.3 loading translations [en]... done making output directory... done Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. [autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst WARNING: Failed to import biom.table. Possible hints: * ModuleNotFoundError: No module named 'biom._filter' * KeyError: 'biom' WARNING: Failed to import biom. Possible hints: * ModuleNotFoundError: No module named 'biom._filter' * KeyError: 'biom' building [mo]: targets for 0 po files that are out of date writing output... building [man]: all manpages updating environment: [new config] 12 added, 0 changed, 0 removed reading sources... [ 8%] BIOM_LICENSE reading sources... [ 17%] documentation/adding_metadata reading sources... [ 25%] documentation/biom_conversion reading sources... [ 33%] documentation/biom_format reading sources... [ 42%] documentation/format_versions/biom-1.0 reading sources... [ 50%] documentation/format_versions/biom-2.0 reading sources... [ 58%] documentation/format_versions/biom-2.1 reading sources... [ 67%] documentation/index reading sources... [ 75%] documentation/quick_usage_examples reading sources... [ 83%] documentation/summarizing_biom_tables reading sources... [ 92%] documentation/table_objects reading sources... [100%] index WARNING: autodoc: failed to import module 'biom'; the following exception was raised: No module named 'biom._filter' [autodoc.import_object] WARNING: autodoc: failed to import module 'table' from module 'biom'; the following exception was raised: No module named 'biom._filter' [autodoc.import_object] looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying assets: done writing... biom.1 { documentation/index documentation/biom_format documentation/format_versions/biom-1.0 documentation/format_versions/biom-2.0 documentation/format_versions/biom-2.1 documentation/quick_usage_examples documentation/table_objects documentation/biom_conversion documentation/adding_metadata documentation/summarizing_biom_tables BIOM_LICENSE } done build succeeded, 4 warnings. The manual pages are in build/man. make[1]: Leaving directory '/build/reproducible-path/python-biom-format-2.1.16' dh_auto_test -O--buildsystem=pybuild pybuild --test --test-pytest -i python{version} -p "3.12 3.13" I: pybuild pybuild:308: cp -r /build/reproducible-path/python-biom-format-2.1.16/examples /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build I: pybuild base:311: cd /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build; python3.12 -m pytest ============================= test session starts ============================== platform linux -- Python 3.12.9, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build configfile: pytest.ini testpaths: biom plugins: cov-5.0.0, typeguard-4.4.1 collected 384 items biom/tests/test_cli/test_add_metadata.py .... [ 1%] biom/tests/test_cli/test_show_install_info.py . [ 1%] biom/tests/test_cli/test_subset_table.py ..... [ 2%] biom/tests/test_cli/test_summarize_table.py .. [ 3%] biom/tests/test_cli/test_table_converter.py ...... [ 4%] biom/tests/test_cli/test_table_normalizer.py . [ 4%] biom/tests/test_cli/test_uc_processor.py ...... [ 6%] biom/tests/test_cli/test_validate_table.py ....................... [ 12%] biom/tests/test_err.py ..................... [ 17%] biom/tests/test_parse.py ........................... [ 25%] biom/tests/test_table.py ............................................... [ 37%] ..ssss.................................................................. [ 55%] ......sss............................................................... [ 74%] ........................................................................ [ 93%] ..... [ 94%] biom/tests/test_util.py .................... [100%] =============================== warnings summary =============================== biom/tests/test_table.py::SupportTests::test_remove_empty_both biom/tests/test_table.py::SupportTests::test_remove_empty_obs biom/tests/test_table.py::SupportTests::test_remove_empty_sample /usr/lib/python3/dist-packages/scipy/sparse/_index.py:151: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil and dok are more efficient. self._set_arrayXarray(i, j, x) biom/tests/test_table.py::TableTests::test_nnz_issue_727 /usr/lib/python3/dist-packages/scipy/sparse/_index.py:108: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil and dok are more efficient. self._set_intXint(row, col, x.flat[0]) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================== 377 passed, 7 skipped, 4 warnings in 4.33s ================== I: pybuild pybuild:308: cp -r /build/reproducible-path/python-biom-format-2.1.16/examples /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build I: pybuild base:311: cd /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build; python3.13 -m pytest ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build configfile: pytest.ini testpaths: biom plugins: cov-5.0.0, typeguard-4.4.1 collected 384 items biom/tests/test_cli/test_add_metadata.py .... [ 1%] biom/tests/test_cli/test_show_install_info.py . [ 1%] biom/tests/test_cli/test_subset_table.py ..... [ 2%] biom/tests/test_cli/test_summarize_table.py .. [ 3%] biom/tests/test_cli/test_table_converter.py ...... [ 4%] biom/tests/test_cli/test_table_normalizer.py . [ 4%] biom/tests/test_cli/test_uc_processor.py ...... [ 6%] biom/tests/test_cli/test_validate_table.py ....................... [ 12%] biom/tests/test_err.py ..................... [ 17%] biom/tests/test_parse.py ........................... [ 25%] biom/tests/test_table.py ............................................... [ 37%] ..ssss.................................................................. [ 55%] ......sss............................................................... [ 74%] ........................................................................ [ 93%] ..... [ 94%] biom/tests/test_util.py .................... [100%] =============================== warnings summary =============================== biom/tests/test_table.py::SupportTests::test_remove_empty_both biom/tests/test_table.py::SupportTests::test_remove_empty_obs biom/tests/test_table.py::SupportTests::test_remove_empty_sample /usr/lib/python3/dist-packages/scipy/sparse/_index.py:151: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil and dok are more efficient. self._set_arrayXarray(i, j, x) biom/tests/test_table.py::TableTests::test_nnz_issue_727 /usr/lib/python3/dist-packages/scipy/sparse/_index.py:108: SparseEfficiencyWarning: Changing the sparsity structure of a csr_matrix is expensive. lil and dok are more efficient. self._set_intXint(row, col, x.flat[0]) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================== 377 passed, 7 skipped, 4 warnings in 4.16s ================== rm -fr -- /tmp/dh-xdg-rundir-f4qSyZtR create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-biom-format.substvars debian/python-biom-format-doc.substvars rm -fr -- debian/.debhelper/generated/python3-biom-format/ debian/python3-biom-format/ debian/tmp/ debian/.debhelper/generated/python-biom-format-doc/ debian/python-biom-format-doc/ rm -f debian/python-biom-format-doc.debhelper.log debian/python3-biom-format.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/python-biom-format-2.1.16' dh_auto_install install -m0755 -d /build/reproducible-path/python-biom-format-2.1.16/debian/tmp pybuild --install -i python{version} -p "3.12 3.13" --dest-dir=/build/reproducible-path/python-biom-format-2.1.16/debian/tmp I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format /build/reproducible-path/python-biom-format-2.1.16/setup.py:15: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as TestCommand /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing biom_format.egg-info/PKG-INFO writing dependency_links to biom_format.egg-info/dependency_links.txt writing entry points to biom_format.egg-info/entry_points.txt writing requirements to biom_format.egg-info/requires.txt writing top-level names to biom_format.egg-info/top_level.txt dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'support_files' warning: no directories found matching 'tests/test_data' no previously-included directories found matching 'docs/_build' warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution adding license file 'COPYING.txt' writing manifest file 'biom_format.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.assets' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.assets' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.assets' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.assets' to be distributed and are already explicitly excluding 'biom.assets' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.tests.bench_tables' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.bench_tables' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.tests.bench_tables' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.tests.bench_tables' to be distributed and are already explicitly excluding 'biom.tests.bench_tables' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.tests.test_cli.test_data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.test_cli.test_data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.tests.test_cli.test_data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.tests.test_cli.test_data' to be distributed and are already explicitly excluding 'biom.tests.test_cli.test_data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) running build_ext running install_lib creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/.pytest_cache creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/.pytest_cache/v creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/.pytest_cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/.pytest_cache/.gitignore -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/.pytest_cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/.pytest_cache/README.md -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/.pytest_cache creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/examples/sam_md.txt -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/examples/rich_sparse_otu_table_hdf5_group_metadata.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/examples/rich_sparse_otu_table_hdf5.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/examples/rich_sparse_otu_table.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/examples/obs_md.txt -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/examples/min_sparse_otu_table_hdf5.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/examples/min_sparse_otu_table.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/examples creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/__pycache__/parse.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/__pycache__/err.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/__pycache__/util.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/__pycache__/exception.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/__pycache__/table.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/_subsample.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/_transform.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/_filter.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/assets copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/assets/exercise_cli.sh -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/assets copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/assets/exercise_api.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/assets copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/_transform.pyx -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/_subsample.pyx -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/_filter.pyx -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/uc_processor.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/table_validator.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/table_ids.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/table_head.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/table_normalizer.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/table_subsetter.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/installation_informer.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/table_converter.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/metadata_exporter.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/util.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/metadata_adder.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/table_summarizer.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/installation_informer.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/metadata_adder.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/metadata_exporter.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/table_converter.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/table_head.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/table_ids.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/table_normalizer.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/table_subsetter.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/table_summarizer.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/table_validator.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/uc_processor.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/cli/util.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/__pycache__/test_util.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/__pycache__/test_table.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/__pycache__/test_parse.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/__pycache__/test_err.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/__pycache__/long_lines.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/__pycache__ creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/bench_tables creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/test_validate_table.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/test_uc_processor.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/test_table_normalizer.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/test_table_converter.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/test_summarize_table.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/test_subset_table.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/test_show_install_info.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/test_add_metadata.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__pycache__ creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data/test.json -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data/test.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_add_metadata.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_show_install_info.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_subset_table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_summarize_table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_table_converter.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_table_normalizer.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_uc_processor.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_cli/test_validate_table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/test_grp_metadata.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/test.json.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/test.json -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/test.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/no-contents.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/empty.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/edgecase_issue_952.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/bad_table.txt.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/bad_table.txt -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_data/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/long_lines.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_err.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_parse.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/tests/test_util.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/err.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/exception.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/parse.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/util.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.12_biom-format/build/biom/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/assets/exercise_api.py to exercise_api.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/installation_informer.py to installation_informer.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/metadata_adder.py to metadata_adder.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/metadata_exporter.py to metadata_exporter.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/table_converter.py to table_converter.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/table_head.py to table_head.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/table_ids.py to table_ids.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/table_normalizer.py to table_normalizer.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/table_subsetter.py to table_subsetter.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/table_summarizer.py to table_summarizer.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/table_validator.py to table_validator.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/uc_processor.py to uc_processor.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/cli/util.py to util.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_add_metadata.py to test_add_metadata.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_show_install_info.py to test_show_install_info.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_subset_table.py to test_subset_table.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_summarize_table.py to test_summarize_table.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_table_converter.py to test_table_converter.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_table_normalizer.py to test_table_normalizer.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_uc_processor.py to test_uc_processor.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_cli/test_validate_table.py to test_validate_table.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_data/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/long_lines.py to long_lines.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_err.py to test_err.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_parse.py to test_parse.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_table.py to test_table.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/tests/test_util.py to test_util.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/err.py to err.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/exception.py to exception.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/parse.py to parse.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/table.py to table.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/util.py to util.cpython-312.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom/__init__.py to __init__.cpython-312.pyc running install_egg_info Copying biom_format.egg-info to /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.12/dist-packages/biom_format-2.1.16.egg-info Skipping SOURCES.txt running install_scripts Installing biom script to /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/bin I: pybuild pybuild:334: dh_numpy3 mv debian/python3-biom-format.substvars.new debian/python3-biom-format.substvars mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format /build/reproducible-path/python-biom-format-2.1.16/setup.py:15: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as TestCommand /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing biom_format.egg-info/PKG-INFO writing dependency_links to biom_format.egg-info/dependency_links.txt writing entry points to biom_format.egg-info/entry_points.txt writing requirements to biom_format.egg-info/requires.txt writing top-level names to biom_format.egg-info/top_level.txt dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'support_files' warning: no directories found matching 'tests/test_data' no previously-included directories found matching 'docs/_build' warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution adding license file 'COPYING.txt' writing manifest file 'biom_format.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.assets' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.assets' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.assets' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.assets' to be distributed and are already explicitly excluding 'biom.assets' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.tests.bench_tables' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.bench_tables' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.tests.bench_tables' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.tests.bench_tables' to be distributed and are already explicitly excluding 'biom.tests.bench_tables' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biom.tests.test_cli.test_data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.test_cli.test_data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'biom.tests.test_cli.test_data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'biom.tests.test_cli.test_data' to be distributed and are already explicitly excluding 'biom.tests.test_cli.test_data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) running build_ext running install_lib creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache/v creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/.pytest_cache/.gitignore -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/.pytest_cache/README.md -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/.pytest_cache creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/sam_md.txt -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/rich_sparse_otu_table_hdf5_group_metadata.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/rich_sparse_otu_table_hdf5.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/rich_sparse_otu_table.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/obs_md.txt -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/min_sparse_otu_table_hdf5.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/examples/min_sparse_otu_table.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/examples creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__pycache__/parse.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__pycache__/err.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__pycache__/util.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__pycache__/exception.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__pycache__/table.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_subsample.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_transform.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_filter.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/assets copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/assets/exercise_cli.sh -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/assets copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/assets/exercise_api.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/assets copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_transform.pyx -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_subsample.pyx -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/_filter.pyx -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/uc_processor.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_validator.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_ids.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_head.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_normalizer.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_subsetter.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/installation_informer.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_converter.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/metadata_exporter.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/util.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/metadata_adder.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/table_summarizer.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/installation_informer.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/metadata_adder.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/metadata_exporter.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_converter.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_head.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_ids.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_normalizer.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_subsetter.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_summarizer.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/table_validator.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/uc_processor.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/cli/util.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__pycache__/test_util.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__pycache__/test_table.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__pycache__/test_parse.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__pycache__/test_err.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__pycache__/long_lines.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__pycache__ creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/bench_tables creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_validate_table.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_uc_processor.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_table_normalizer.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_table_converter.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_summarize_table.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_subset_table.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_show_install_info.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/test_add_metadata.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__pycache__ creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data/test.json -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data/test.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_add_metadata.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_show_install_info.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_subset_table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_summarize_table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_table_converter.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_table_normalizer.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_uc_processor.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_cli/test_validate_table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli creating /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/test_grp_metadata.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/test.json.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/test.json -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/test.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/no-contents.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/empty.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/edgecase_issue_952.biom -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/bad_table.txt.gz -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/bad_table.txt -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_data/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/long_lines.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_err.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_parse.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/tests/test_util.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/err.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/exception.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/parse.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/table.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/util.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom copying /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build/biom/__init__.py -> /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/assets/exercise_api.py to exercise_api.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/installation_informer.py to installation_informer.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/metadata_adder.py to metadata_adder.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/metadata_exporter.py to metadata_exporter.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_converter.py to table_converter.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_head.py to table_head.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_ids.py to table_ids.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_normalizer.py to table_normalizer.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_subsetter.py to table_subsetter.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_summarizer.py to table_summarizer.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/table_validator.py to table_validator.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/uc_processor.py to uc_processor.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/cli/util.py to util.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_add_metadata.py to test_add_metadata.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_show_install_info.py to test_show_install_info.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_subset_table.py to test_subset_table.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_summarize_table.py to test_summarize_table.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_table_converter.py to test_table_converter.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_table_normalizer.py to test_table_normalizer.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_uc_processor.py to test_uc_processor.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_cli/test_validate_table.py to test_validate_table.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_data/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/long_lines.py to long_lines.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_err.py to test_err.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_parse.py to test_parse.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_table.py to test_table.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/tests/test_util.py to test_util.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/err.py to err.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/exception.py to exception.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/parse.py to parse.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/table.py to table.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/util.py to util.cpython-313.pyc byte-compiling /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom/__init__.py to __init__.cpython-313.pyc running install_egg_info Copying biom_format.egg-info to /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/lib/python3.13/dist-packages/biom_format-2.1.16.egg-info Skipping SOURCES.txt running install_scripts Installing biom script to /build/reproducible-path/python-biom-format-2.1.16/debian/python3-biom-format/usr/bin I: pybuild pybuild:334: dh_numpy3 mv debian/python3-biom-format.substvars.new debian/python3-biom-format.substvars find debian/python3-biom-format -name .coverage -delete make[1]: Leaving directory '/build/reproducible-path/python-biom-format-2.1.16' rm -f debian/python-biom-format-doc.debhelper.log debian/python3-biom-format.debhelper.log debian/rules override_dh_installdocs-indep make[1]: Entering directory '/build/reproducible-path/python-biom-format-2.1.16' dh_installdocs --indep dh_installdocs: warning: Cannot auto-detect main package for python-biom-format-doc. If the default is wrong, please use --doc-main-package install -m0755 -d debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc install -m0755 -d debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc cd './build/html/..' && find 'html' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/reproducible-path/python-biom-format-2.1.16/debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc chmod -R u\+rw,go=rX debian/python-biom-format-doc/usr/share/doc install -p -m0644 debian/copyright debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/copyright install -m0755 -d debian/python-biom-format-doc/usr/share/doc-base/ install -p -m0644 debian/python-biom-format-doc.doc-base debian/python-biom-format-doc/usr/share/doc-base/python-biom-format-doc.python-biom-format dh_sphinxdoc --indep ln -sf ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/language_data.js dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/copybutton.js ln -sf ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/sphinx_highlight.js ln -sf ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/doctools.js ln -sf ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/searchtools.js rm -rf debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/.doctrees rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/.buildinfo mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars make[1]: Leaving directory '/build/reproducible-path/python-biom-format-2.1.16' dh_installdocs -O--buildsystem=pybuild -Npython-biom-format-doc install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format cp --reflink=auto -a ./debian/README.test debian/python3-biom-format/usr/share/doc/python3-biom-format cp --reflink=auto -a ./debian/tests/run-unit-test debian/python3-biom-format/usr/share/doc/python3-biom-format chmod -R u\+rw,go=rX debian/python3-biom-format/usr/share/doc install -p -m0644 debian/copyright debian/python3-biom-format/usr/share/doc/python3-biom-format/copyright dh_sphinxdoc -O--buildsystem=pybuild dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/copybutton.js dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc install -p -m0644 debian/.debhelper/generated/python-biom-format-doc/dh_installchangelogs.dch.trimmed debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/changelog.Debian install -p -m0644 ./ChangeLog.md debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/changelog install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format install -p -m0644 debian/.debhelper/generated/python3-biom-format/dh_installchangelogs.dch.trimmed debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog.Debian install -p -m0644 ./ChangeLog.md debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog rm -f debian/python-biom-format-doc.debhelper.log debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/python-biom-format-2.1.16' dh_installexamples install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/min_sparse_otu_table.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/min_sparse_otu_table_hdf5.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/obs_md.txt debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/rich_sparse_otu_table.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/rich_sparse_otu_table_hdf5.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/rich_sparse_otu_table_hdf5_group_metadata.biom debian/python3-biom-format/usr/share/doc/python3-biom-format/examples cp --reflink=auto -a ./examples/sam_md.txt debian/python3-biom-format/usr/share/doc/python3-biom-format/examples find debian -name "*.c" -delete find debian -name "*.pyx" -delete # move tests from Python3 package to examples package if [ ! -d biom/tests ] ; then \ mv `find debian/python*biom-format -name tests -type d` biom ; \ else \ find debian/python*biom-format -name tests -type d | xargs rm -rf ; \ fi make[1]: Leaving directory '/build/reproducible-path/python-biom-format-2.1.16' dh_installman -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/usr/share/man/man1/ install -p -m0644 ./debian/biom.1 debian/python3-biom-format/usr/share/man/man1/biom.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-biom-format/usr/share/man/man1/biom.1 mv debian/python3-biom-format/usr/share/man/man1/biom.1.dh-new debian/python3-biom-format/usr/share/man/man1/biom.1 chmod 0644 -- debian/python3-biom-format/usr/share/man/man1/biom.1 dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:180: version: 6.20250108 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:183: supported Python versions: 3.12,3.13 (default=3.13) D: dh_python3 debhelper:166: skipping package python-biom-format-doc (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:174: source=python-biom-format, binary packages=['python3-biom-format'] D: dh_python3 dh_python3:205: processing package python3-biom-format... D: dh_python3 fs:50: moving files from debian/python3-biom-format/usr/lib/python3.12/dist-packages to debian/python3-biom-format/usr/lib/python3/dist-packages/ D: dh_python3 fs:50: moving files from debian/python3-biom-format/usr/lib/python3.13/dist-packages to debian/python3-biom-format/usr/lib/python3/dist-packages/ D: dh_python3 fs:249: removing dist-packages/.pytest_cache D: dh_python3 fs:338: package python3-biom-format details = {'requires.txt': {'debian/python3-biom-format/usr/lib/python3/dist-packages/biom_format-2.1.16.egg-info/requires.txt'}, 'egg-info': {'debian/python3-biom-format/usr/lib/python3/dist-packages/biom_format-2.1.16.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.12'), Version('3.13')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-biom-format D: dh_python3 pydist:175: trying to find dependency for click (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for h5py (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for numpy>=1.9.2 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for pandas>=0.20.0 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for scipy>=1.3.1 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 depends:253: D={'python3-click', 'python3-scipy', 'python3 (<< 3.14)', 'python3:any', 'python3 (>= 3.12~)', 'python3-numpy', 'python3-h5py', 'python3-pandas'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/language_data.js ln -s ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/language_data.js rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/sphinx_highlight.js ln -s ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/sphinx_highlight.js rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/doctools.js ln -s ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/doctools.js rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/searchtools.js ln -s ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/searchtools.js dh_strip_nondeterminism -O--buildsystem=pybuild Using 1716835050 as canonical time Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/plus.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/minus.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/file.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/bullet_orange.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/biom-format.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/bg-page.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/alert_info_32.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_images/biom-format.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/alert_warning_32.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=pybuild cd debian/python3-biom-format cd debian/python-biom-format-doc chmod a-x usr/share/doc/python3-biom-format/changelog usr/share/doc/python3-biom-format/changelog.Debian usr/share/man/man1/biom.1 chmod a-x usr/share/doc/python-biom-format-doc/changelog usr/share/doc/python-biom-format-doc/changelog.Debian gzip -9nf usr/share/doc/python3-biom-format/changelog usr/share/doc/python3-biom-format/changelog.Debian usr/share/man/man1/biom.1 gzip -9nf usr/share/doc/python-biom-format-doc/changelog usr/share/doc/python-biom-format-doc/changelog.Debian cd '/build/reproducible-path/python-biom-format-2.1.16' cd '/build/reproducible-path/python-biom-format-2.1.16' rm -f debian/python-biom-format-doc.debhelper.log debian/python3-biom-format.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/python-biom-format-2.1.16' dh_fixperms find debian/python3-biom-format ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-biom-format-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-biom-format-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/python-biom-format-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biom-format/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biom-format/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biom-format/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python-biom-format-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-biom-format/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biom-format-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biom-format -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biom-format/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/python3-biom-format/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian -name exercise_cli.sh -exec chmod +x \{\} \; make[1]: Leaving directory '/build/reproducible-path/python-biom-format-2.1.16' dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/usr/lib/debug/.dwz/aarch64-linux-gnu dwz -mdebian/python3-biom-format/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-biom-format.debug -M/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-biom-format.debug -- debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-312-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-313-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-312-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-313-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-312-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-313-aarch64-linux-gnu.so objcopy --compress-debug-sections debian/python3-biom-format/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-biom-format.debug chmod 0644 -- debian/python3-biom-format/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-biom-format.debug dh_strip -a -O--buildsystem=pybuild install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/48 objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/48/c92d283bb34db5e8c04dfe5632db28af9e103c.debug chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/48/c92d283bb34db5e8c04dfe5632db28af9e103c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/48/c92d283bb34db5e8c04dfe5632db28af9e103c.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/2f objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/2f/2aaae1dca22db0c7a63ff2fdb55e5fcaf76ca0.debug chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/2f/2aaae1dca22db0c7a63ff2fdb55e5fcaf76ca0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-313-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/2f/2aaae1dca22db0c7a63ff2fdb55e5fcaf76ca0.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-313-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/15 objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/15/ae4f68d566d3231d2829af358485d30f0235be.debug chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/15/ae4f68d566d3231d2829af358485d30f0235be.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/15/ae4f68d566d3231d2829af358485d30f0235be.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/18 objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/18/77bdee58e5b42e266699ddf9029b3bab1d7a21.debug chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/18/77bdee58e5b42e266699ddf9029b3bab1d7a21.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-313-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/18/77bdee58e5b42e266699ddf9029b3bab1d7a21.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-313-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/08 objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/08/cb274655789d7259a5701e936d9bff6334f32b.debug chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/08/cb274655789d7259a5701e936d9bff6334f32b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/08/cb274655789d7259a5701e936d9bff6334f32b.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/d3 objcopy --only-keep-debug --compress-debug-sections debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/d3/820f286439385d9a6a038ad2ecfc44140dda69.debug chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/d3/820f286439385d9a6a038ad2ecfc44140dda69.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-313-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.build-id/d3/820f286439385d9a6a038ad2ecfc44140dda69.debug debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-313-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-biom-format/usr/lib/debug/.dwz/aarch64-linux-gnu debian/.debhelper/python3-biom-format/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-biom-format/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-biom-format/usr/lib/debug install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/usr/share/doc ln -s python3-biom-format debian/.debhelper/python3-biom-format/dbgsym-root/usr/share/doc/python3-biom-format-dbgsym install -m0755 -d debian/.debhelper/python3-biom-format dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/python3-biom-format/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/DEBIAN dpkg-shlibdeps -Tdebian/python3-biom-format.substvars debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-312-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_filter.cpython-313-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-312-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_subsample.cpython-313-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-312-aarch64-linux-gnu.so debian/python3-biom-format/usr/lib/python3/dist-packages/biom/_transform.cpython-313-aarch64-linux-gnu.so dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-biom-format/DEBIAN/postinst cat debian/python3-biom-format.postinst.debhelper >> debian/python3-biom-format/DEBIAN/postinst chmod 0755 -- debian/python3-biom-format/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-biom-format/DEBIAN/prerm cat debian/python3-biom-format.prerm.debhelper >> debian/python3-biom-format/DEBIAN/prerm chmod 0755 -- debian/python3-biom-format/DEBIAN/prerm install -m0755 -d debian/python-biom-format-doc/DEBIAN dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/python-biom-format-doc/DEBIAN echo misc:Depends= >> debian/python-biom-format-doc.substvars echo misc:Pre-Depends= >> debian/python-biom-format-doc.substvars dpkg-gencontrol -ppython-biom-format-doc -ldebian/changelog -Tdebian/python-biom-format-doc.substvars -cdebian/control -Pdebian/python-biom-format-doc install -m0755 -d debian/python3-biom-format/DEBIAN echo misc:Depends= >> debian/python3-biom-format.substvars echo misc:Pre-Depends= >> debian/python3-biom-format.substvars install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-biom-format -ldebian/changelog -Tdebian/python3-biom-format.substvars -cdebian/control -Pdebian/.debhelper/python3-biom-format/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-biom-format-dbgsym "-DDepends=python3-biom-format (= \${binary:Version})" "-DDescription=debug symbols for python3-biom-format" "-DBuild-Ids=08cb274655789d7259a5701e936d9bff6334f32b 15ae4f68d566d3231d2829af358485d30f0235be 1877bdee58e5b42e266699ddf9029b3bab1d7a21 2f2aaae1dca22db0c7a63ff2fdb55e5fcaf76ca0 48c92d283bb34db5e8c04dfe5632db28af9e103c d3820f286439385d9a6a038ad2ecfc44140dda69" -DSection=debug -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: package python-biom-format-doc: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package python-biom-format-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-biom-format -ldebian/changelog -Tdebian/python3-biom-format.substvars -cdebian/control -Pdebian/python3-biom-format chmod 0644 -- debian/python-biom-format-doc/DEBIAN/control chmod 0644 -- debian/python3-biom-format/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/DEBIAN install -m0755 -d debian/python-biom-format-doc/DEBIAN cd debian/python3-biom-format >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python-biom-format-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python-biom-format-doc/DEBIAN/md5sums chmod 0644 -- debian/python3-biom-format/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN cd debian/.debhelper/python3-biom-format/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-biom-format .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-biom-format/dbgsym-root .. dpkg-deb --root-owner-group --build debian/python-biom-format-doc .. dpkg-deb: building package 'python3-biom-format-dbgsym' in '../python3-biom-format-dbgsym_2.1.16-1_arm64.deb'. dpkg-deb: building package 'python3-biom-format' in '../python3-biom-format_2.1.16-1_arm64.deb'. dpkg-deb: building package 'python-biom-format-doc' in '../python-biom-format-doc_2.1.16-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-biom-format_2.1.16-1_arm64.buildinfo dpkg-genchanges --build=binary -O../python-biom-format_2.1.16-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2398783/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2398783/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2398783 and its subdirectories I: Current time: Sun Feb 23 03:41:27 +14 2025 I: pbuilder-time-stamp: 1740231687 + false + set +x Sat Feb 22 13:41:27 UTC 2025 I: Signing ./b2/python-biom-format_2.1.16-1_arm64.buildinfo as python-biom-format_2.1.16-1_arm64.buildinfo.asc Sat Feb 22 13:41:27 UTC 2025 I: Signed ./b2/python-biom-format_2.1.16-1_arm64.buildinfo as ./b2/python-biom-format_2.1.16-1_arm64.buildinfo.asc Sat Feb 22 13:41:27 UTC 2025 - build #2 for python-biom-format/trixie/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Sat Feb 22 13:41:27 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-A7jiC90J, removing. /srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly: total 388 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 13:38 b1 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 13:41 b2 -rw-r--r-- 1 jenkins jenkins 2628 May 27 2024 python-biom-format_2.1.16-1.dsc -rw------- 1 jenkins jenkins 379064 Feb 22 13:38 rbuildlog.y5R7vbO /srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly/b1: total 13008 -rw-r--r-- 1 jenkins jenkins 374948 Feb 22 13:38 build.log -rw-r--r-- 1 jenkins jenkins 67184 Feb 22 13:38 python-biom-format-doc_2.1.16-1_all.deb -rw-r--r-- 1 jenkins jenkins 11564 Feb 22 13:38 python-biom-format_2.1.16-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2628 Feb 22 13:38 python-biom-format_2.1.16-1.dsc -rw-r--r-- 1 jenkins jenkins 11500 Feb 22 13:38 python-biom-format_2.1.16-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 12382 Feb 22 13:38 python-biom-format_2.1.16-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2446 Feb 22 13:38 python-biom-format_2.1.16-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 2183 Feb 22 13:38 python-biom-format_2.1.16-1_source.changes -rw-r--r-- 1 jenkins jenkins 11896065 Feb 22 13:38 python-biom-format_2.1.16.orig.tar.gz -rw-r--r-- 1 jenkins jenkins 727340 Feb 22 13:38 python3-biom-format-dbgsym_2.1.16-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 159420 Feb 22 13:38 python3-biom-format_2.1.16-1_arm64.deb /srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly/b2: total 12980 -rw-r--r-- 1 jenkins jenkins 376891 Feb 22 13:41 build.log -rw-r--r-- 1 jenkins jenkins 67184 Feb 22 13:41 python-biom-format-doc_2.1.16-1_all.deb -rw-r--r-- 1 jenkins jenkins 11564 Feb 22 13:41 python-biom-format_2.1.16-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2628 Feb 22 13:41 python-biom-format_2.1.16-1.dsc -rw-r--r-- 1 jenkins jenkins 11500 Feb 22 13:41 python-biom-format_2.1.16-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 12382 Feb 22 13:41 python-biom-format_2.1.16-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2446 Feb 22 13:41 python-biom-format_2.1.16-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 2183 Feb 22 13:41 python-biom-format_2.1.16-1_source.changes -rw-r--r-- 1 jenkins jenkins 11896065 Feb 22 13:41 python-biom-format_2.1.16.orig.tar.gz -rw-r--r-- 1 jenkins jenkins 727340 Feb 22 13:41 python3-biom-format-dbgsym_2.1.16-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 159420 Feb 22 13:41 python3-biom-format_2.1.16-1_arm64.deb Sat Feb 22 13:41:28 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Sat Feb 22 13:41:29 UTC 2025 I: python-biom-format_2.1.16-1_arm64.changes: Format: 1.8 Date: Mon, 27 May 2024 20:37:30 +0200 Source: python-biom-format Binary: python-biom-format-doc python3-biom-format python3-biom-format-dbgsym Architecture: all arm64 Version: 2.1.16-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: python-biom-format-doc - documentation for BIOM format python3-biom-format - Biological Observation Matrix (BIOM) format (Python 3) Changes: python-biom-format (2.1.16-1) unstable; urgency=medium . * New upstream version 2.1.16 * fix_future_import.patch: unfuzz. * ignore_local_dist-packages.patch: unfuzz. * adjust-pd-df-interaction-with-greater-than.patch. Patch deleted, as it was applied upstream. * d/copyright: account for upstream move to Revised BSD. * d/control: declare compliance to standards version 4.7.0. * d/{copyright,watch}: no dfsg repack needed anymore. Upstream repository has been clean of excluded artifacts since 2.1.9. * d/python-biom-format-doc.lintian-overrides: delete. The false positive previously documented does not show up anymore. Checksums-Sha1: c90f8965b7bf2ecacf51a68953f5eebdf9a933b7 67184 python-biom-format-doc_2.1.16-1_all.deb 4f8bb62896cc2919014f2990f41c041fcaa9244e 11500 python-biom-format_2.1.16-1_arm64.buildinfo 609bb3ceb7247bc1e684f384109292ed000fffcd 727340 python3-biom-format-dbgsym_2.1.16-1_arm64.deb a05df12984f020c1e29a77f53e4c0a39f0abb32f 159420 python3-biom-format_2.1.16-1_arm64.deb Checksums-Sha256: 6db740cdd43bdfb666880a3f9a04983dedefabdd5b46816a75c0c380fa119248 67184 python-biom-format-doc_2.1.16-1_all.deb f94fc3e818d7f3a971b30a5887f7b27ff28c6300f70ee98fd223b0f7b41bf6c5 11500 python-biom-format_2.1.16-1_arm64.buildinfo a3809b2378283a8d104ee9f328ae7403e5beab214e8fde7735901572574d650f 727340 python3-biom-format-dbgsym_2.1.16-1_arm64.deb 87be1b144724a517ee49db948d13a87e9960609aac7c5ab92a5064ba4d6d7a43 159420 python3-biom-format_2.1.16-1_arm64.deb Files: 43b52c9f0afa2a95864a2a1aa30feb67 67184 doc optional python-biom-format-doc_2.1.16-1_all.deb 043bfe380b41790eed79eaddfc22a07b 11500 python optional python-biom-format_2.1.16-1_arm64.buildinfo 5b2d9615aa8c89be70ac2a0d1cdf0ebc 727340 debug optional python3-biom-format-dbgsym_2.1.16-1_arm64.deb 54639fecadf5293050f52762a2400c78 159420 python optional python3-biom-format_2.1.16-1_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/python-biom-format_2.1.16-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/python-biom-format_2.1.16-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/python-biom-format_2.1.16-1.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/python-biom-format_2.1.16-1.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/arm64/python-biom-format_2.1.16-1_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/python-biom-format_2.1.16-1.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-02-22 13:38:29.390472330 +0000 +++ b2/build.log 2025-02-22 13:41:28.210361034 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Mar 27 07:58:39 -12 2026 -I: pbuilder-time-stamp: 1774641519 +I: Current time: Sun Feb 23 03:38:32 +14 2025 +I: pbuilder-time-stamp: 1740231512 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -28,52 +28,84 @@ dpkg-source: info: applying posix_shell.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3219725/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2398783/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 22 13:38 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2398783/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2398783/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='679a7a6de31742c6b620743ddc4b044a' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3219725' - PS1='# ' - PS2='> ' + INVOCATION_ID=d5a0882a48b0488ab076058ac5ae8984 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2398783 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly/pbuilderrc_PVXH --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly/b1 --logfile b1/build.log python-biom-format_2.1.16-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly/pbuilderrc_8ra0 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly/b2 --logfile b2/build.log python-biom-format_2.1.16-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3219725/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2398783/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -86,7 +118,7 @@ Depends: debhelper-compat (= 13), dh-sequence-python3, help2man, bash-completion, cython3, python3-all-dev, python3-click, python3-h5py, python3-numpy, python3-numpydoc, python3-pandas, python3-setuptools, python3-scipy, python3-sphinx, python3-matplotlib, python3-pytest, python3-pytest-cov dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. -(Reading database ... 19922 files and directories currently installed.) +(Reading database ... 19972 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: @@ -367,10 +399,10 @@ Get: 224 http://deb.debian.org/debian trixie/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 225 http://deb.debian.org/debian trixie/main arm64 python3-pytest all 8.3.4-1 [250 kB] Get: 226 http://deb.debian.org/debian trixie/main arm64 python3-pytest-cov all 5.0.0-1 [26.8 kB] -Fetched 143 MB in 1s (218 MB/s) +Fetched 143 MB in 1s (246 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19922 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19972 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-7+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libpython3.13-minimal:arm64. @@ -386,7 +418,7 @@ Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.13-minimal (3.13.2-1) ... Selecting previously unselected package python3-minimal. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20271 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20321 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.1-2_arm64.deb ... Unpacking python3-minimal (3.13.1-2) ... Selecting previously unselected package media-types. @@ -422,7 +454,7 @@ Unpacking libpython3-stdlib:arm64 (3.13.1-2) ... Setting up python3-minimal (3.13.1-2) ... Selecting previously unselected package python3. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21281 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21331 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.1-2_arm64.deb ... Unpacking python3 (3.13.1-2) ... Selecting previously unselected package libpython3.12-minimal:arm64. @@ -1102,8 +1134,8 @@ Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Mar 27 19:59:11 UTC 2026. -Universal Time is now: Fri Mar 27 19:59:11 UTC 2026. +Local time is now: Sat Feb 22 13:39:07 UTC 2025. +Universal Time is now: Sat Feb 22 13:39:07 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... @@ -1315,7 +1347,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-biom-format-2.1.16/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-biom-format_2.1.16-1_source.changes +I: user script /srv/workspace/pbuilder/2398783/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/2398783/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-biom-format-2.1.16/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-biom-format_2.1.16-1_source.changes dpkg-buildpackage: info: source package python-biom-format dpkg-buildpackage: info: source version 2.1.16-1 dpkg-buildpackage: info: source distribution unstable @@ -2182,12 +2218,12 @@ [autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst WARNING: Failed to import biom.table. Possible hints: -* ModuleNotFoundError: No module named 'biom._filter' * KeyError: 'biom' +* ModuleNotFoundError: No module named 'biom._filter' WARNING: Failed to import biom. Possible hints: -* ModuleNotFoundError: No module named 'biom._filter' * KeyError: 'biom' +* ModuleNotFoundError: No module named 'biom._filter' building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 12 source files that are out of date @@ -2257,12 +2293,12 @@ [autosummary] generating autosummary for: BIOM_LICENSE.rst, documentation/adding_metadata.rst, documentation/biom_conversion.rst, documentation/biom_format.rst, documentation/index.rst, documentation/quick_usage_examples.rst, documentation/summarizing_biom_tables.rst, documentation/table_objects.rst, index.rst WARNING: Failed to import biom.table. Possible hints: -* KeyError: 'biom' * ModuleNotFoundError: No module named 'biom._filter' +* KeyError: 'biom' WARNING: Failed to import biom. Possible hints: -* KeyError: 'biom' * ModuleNotFoundError: No module named 'biom._filter' +* KeyError: 'biom' building [mo]: targets for 0 po files that are out of date writing output... building [man]: all manpages @@ -2348,7 +2384,7 @@ self._set_intXint(row, col, x.flat[0]) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -================== 377 passed, 7 skipped, 4 warnings in 4.40s ================== +================== 377 passed, 7 skipped, 4 warnings in 4.33s ================== I: pybuild pybuild:308: cp -r /build/reproducible-path/python-biom-format-2.1.16/examples /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build I: pybuild base:311: cd /build/reproducible-path/python-biom-format-2.1.16/.pybuild/cpython3_3.13_biom-format/build; python3.13 -m pytest ============================= test session starts ============================== @@ -2388,8 +2424,8 @@ self._set_intXint(row, col, x.flat[0]) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -================== 377 passed, 7 skipped, 4 warnings in 4.11s ================== - rm -fr -- /tmp/dh-xdg-rundir-8cPb4qtA +================== 377 passed, 7 skipped, 4 warnings in 4.16s ================== + rm -fr -- /tmp/dh-xdg-rundir-f4qSyZtR create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -3309,11 +3345,11 @@ install -m0755 -d debian/python-biom-format-doc/usr/share/doc-base/ install -p -m0644 debian/python-biom-format-doc.doc-base debian/python-biom-format-doc/usr/share/doc-base/python-biom-format-doc.python-biom-format dh_sphinxdoc --indep + ln -sf ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/language_data.js +dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/copybutton.js ln -sf ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/sphinx_highlight.js ln -sf ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/doctools.js -dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/copybutton.js ln -sf ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/searchtools.js - ln -sf ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/language_data.js rm -rf debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/.doctrees rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/.buildinfo mv debian/python-biom-format-doc.substvars.new debian/python-biom-format-doc.substvars @@ -3332,12 +3368,12 @@ dh_sphinxdoc -O--buildsystem=pybuild dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/copybutton.js dh_installchangelogs -O--buildsystem=pybuild - install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format - install -p -m0644 debian/.debhelper/generated/python3-biom-format/dh_installchangelogs.dch.trimmed debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog.Debian - install -p -m0644 ./ChangeLog.md debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog install -m0755 -d debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc install -p -m0644 debian/.debhelper/generated/python-biom-format-doc/dh_installchangelogs.dch.trimmed debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/changelog.Debian install -p -m0644 ./ChangeLog.md debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/changelog + install -m0755 -d debian/python3-biom-format/usr/share/doc/python3-biom-format + install -p -m0644 debian/.debhelper/generated/python3-biom-format/dh_installchangelogs.dch.trimmed debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog.Debian + install -p -m0644 ./ChangeLog.md debian/python3-biom-format/usr/share/doc/python3-biom-format/changelog rm -f debian/python-biom-format-doc.debhelper.log debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/python-biom-format-2.1.16' @@ -3393,36 +3429,36 @@ D: dh_python3 pydist:175: trying to find dependency for scipy>=1.3.1 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps -D: dh_python3 depends:253: D={'python3-pandas', 'python3-numpy', 'python3 (>= 3.12~)', 'python3:any', 'python3-scipy', 'python3-click', 'python3 (<< 3.14)', 'python3-h5py'}; R=[]; S=[]; E=[], B=[]; RT=[] +D: dh_python3 depends:253: D={'python3-click', 'python3-scipy', 'python3 (<< 3.14)', 'python3:any', 'python3 (>= 3.12~)', 'python3-numpy', 'python3-h5py', 'python3-pandas'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild + rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/language_data.js + ln -s ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/language_data.js rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/sphinx_highlight.js ln -s ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/sphinx_highlight.js rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/doctools.js ln -s ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/doctools.js rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/searchtools.js ln -s ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/searchtools.js - rm -f debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/language_data.js - ln -s ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/language_data.js dh_strip_nondeterminism -O--buildsystem=pybuild Using 1716835050 as canonical time Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/plus.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/minus.png using File::StripNondeterminism::handlers::png - Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/bullet_orange.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/file.png using File::StripNondeterminism::handlers::png + Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/bullet_orange.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/biom-format.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/bg-page.png using File::StripNondeterminism::handlers::png - Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/alert_warning_32.png using File::StripNondeterminism::handlers::png - Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_images/biom-format.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/alert_info_32.png using File::StripNondeterminism::handlers::png + Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_images/biom-format.png using File::StripNondeterminism::handlers::png + Normalizing debian/python-biom-format-doc/usr/share/doc/python-biom-format-doc/html/_static/alert_warning_32.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=pybuild cd debian/python3-biom-format cd debian/python-biom-format-doc - chmod a-x usr/share/doc/python-biom-format-doc/changelog usr/share/doc/python-biom-format-doc/changelog.Debian chmod a-x usr/share/doc/python3-biom-format/changelog usr/share/doc/python3-biom-format/changelog.Debian usr/share/man/man1/biom.1 - gzip -9nf usr/share/doc/python-biom-format-doc/changelog usr/share/doc/python-biom-format-doc/changelog.Debian + chmod a-x usr/share/doc/python-biom-format-doc/changelog usr/share/doc/python-biom-format-doc/changelog.Debian gzip -9nf usr/share/doc/python3-biom-format/changelog usr/share/doc/python3-biom-format/changelog.Debian usr/share/man/man1/biom.1 + gzip -9nf usr/share/doc/python-biom-format-doc/changelog usr/share/doc/python-biom-format-doc/changelog.Debian cd '/build/reproducible-path/python-biom-format-2.1.16' cd '/build/reproducible-path/python-biom-format-2.1.16' rm -f debian/python-biom-format-doc.debhelper.log debian/python3-biom-format.debhelper.log @@ -3505,26 +3541,26 @@ chmod 0755 -- debian/python3-biom-format/DEBIAN/prerm install -m0755 -d debian/python-biom-format-doc/DEBIAN dh_gencontrol -O--buildsystem=pybuild + install -m0755 -d debian/python-biom-format-doc/DEBIAN + echo misc:Depends= >> debian/python-biom-format-doc.substvars + echo misc:Pre-Depends= >> debian/python-biom-format-doc.substvars + dpkg-gencontrol -ppython-biom-format-doc -ldebian/changelog -Tdebian/python-biom-format-doc.substvars -cdebian/control -Pdebian/python-biom-format-doc install -m0755 -d debian/python3-biom-format/DEBIAN echo misc:Depends= >> debian/python3-biom-format.substvars echo misc:Pre-Depends= >> debian/python3-biom-format.substvars install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-biom-format -ldebian/changelog -Tdebian/python3-biom-format.substvars -cdebian/control -Pdebian/.debhelper/python3-biom-format/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-biom-format-dbgsym "-DDepends=python3-biom-format (= \${binary:Version})" "-DDescription=debug symbols for python3-biom-format" "-DBuild-Ids=08cb274655789d7259a5701e936d9bff6334f32b 15ae4f68d566d3231d2829af358485d30f0235be 1877bdee58e5b42e266699ddf9029b3bab1d7a21 2f2aaae1dca22db0c7a63ff2fdb55e5fcaf76ca0 48c92d283bb34db5e8c04dfe5632db28af9e103c d3820f286439385d9a6a038ad2ecfc44140dda69" -DSection=debug -UMulti-Arch -UReplaces -UBreaks - install -m0755 -d debian/python-biom-format-doc/DEBIAN - echo misc:Depends= >> debian/python-biom-format-doc.substvars - echo misc:Pre-Depends= >> debian/python-biom-format-doc.substvars - dpkg-gencontrol -ppython-biom-format-doc -ldebian/changelog -Tdebian/python-biom-format-doc.substvars -cdebian/control -Pdebian/python-biom-format-doc dpkg-gencontrol: warning: package python-biom-format-doc: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package python-biom-format-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined - chmod 0644 -- debian/python-biom-format-doc/DEBIAN/control chmod 0644 -- debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-biom-format -ldebian/changelog -Tdebian/python3-biom-format.substvars -cdebian/control -Pdebian/python3-biom-format + chmod 0644 -- debian/python-biom-format-doc/DEBIAN/control chmod 0644 -- debian/python3-biom-format/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/python3-biom-format/DEBIAN install -m0755 -d debian/python-biom-format-doc/DEBIAN - cd debian/python-biom-format-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python3-biom-format >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + cd debian/python-biom-format-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python-biom-format-doc/DEBIAN/md5sums chmod 0644 -- debian/python3-biom-format/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-biom-format/dbgsym-root/DEBIAN @@ -3534,8 +3570,8 @@ dpkg-deb --root-owner-group --build debian/python3-biom-format .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-biom-format/dbgsym-root .. dpkg-deb --root-owner-group --build debian/python-biom-format-doc .. -dpkg-deb: building package 'python3-biom-format' in '../python3-biom-format_2.1.16-1_arm64.deb'. dpkg-deb: building package 'python3-biom-format-dbgsym' in '../python3-biom-format-dbgsym_2.1.16-1_arm64.deb'. +dpkg-deb: building package 'python3-biom-format' in '../python3-biom-format_2.1.16-1_arm64.deb'. dpkg-deb: building package 'python-biom-format-doc' in '../python-biom-format-doc_2.1.16-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-biom-format_2.1.16-1_arm64.buildinfo dpkg-genchanges --build=binary -O../python-biom-format_2.1.16-1_arm64.changes @@ -3544,12 +3580,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2398783/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2398783/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3219725 and its subdirectories -I: Current time: Fri Mar 27 08:01:28 -12 2026 -I: pbuilder-time-stamp: 1774641688 +I: removing directory /srv/workspace/pbuilder/2398783 and its subdirectories +I: Current time: Sun Feb 23 03:41:27 +14 2025 +I: pbuilder-time-stamp: 1740231687 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/python-biom-format_2.1.16-1.diff: 78.9% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/python-biom-format_2.1.16-1.diff.gz b2/build.log: 90.4% -- replaced with stdout Compressing the 1st log... b1/build.log: 90.6% -- replaced with stdout Sat Feb 22 13:41:30 UTC 2025 I: diffoscope 289 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_python-biom-format_trixie_arm64_1740231690 + touch /var/log/reproducible-builds/diffoscope_stamp_python-biom-format_trixie_arm64_1740231690 + RESULT=0 + systemd-run '--description=diffoscope on python-biom-format/2.1.16-1 in trixie/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_4-58356 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly --run-session -c jenkins-reproducible-trixie-diffoscope-cc4d7dc8-b70b-4c5c-b137-85c99c0fce87 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly/dbd-tmp-EF4ZaEv ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly/python-biom-format_2.1.16-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly/python-biom-format_2.1.16-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly/python-biom-format_2.1.16-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly/b1/python-biom-format_2.1.16-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly/b2/python-biom-format_2.1.16-1_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_4-58356.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly/python-biom-format_2.1.16-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly/python-biom-format_2.1.16-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly/python-biom-format_2.1.16-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly/b1/python-biom-format_2.1.16-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.tiQpuZly/b2/python-biom-format_2.1.16-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 218ms CPU time consumed: 219ms _ _ _ _ __ _ __ _ _| |_| |__ ___ _ __ | |__ (_) ___ _ __ ___ / _| | '_ \| | | | __| '_ \ / _ \| '_ \ _____| '_ \| |/ _ \| '_ ` _ \ _____| |_ | |_) | |_| | |_| | | | (_) | | | |_____| |_) | | (_) | | | | | |_____| _| | .__/ \__, |\__|_| |_|\___/|_| |_| |_.__/|_|\___/|_| |_| |_| |_| |_| |___/ _ ___ _ __ _ __ ___ __ _| |_ / _ \| '__| '_ ` _ \ / _` | __| | (_) | | | | | | | | (_| | |_ \___/|_| |_| |_| |_|\__,_|\__| Sat Feb 22 13:41:30 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists. Sat Feb 22 13:41:30 UTC 2025 I: python-biom-format from trixie built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-02-22 13:41:31] INFO: Starting at 2025-02-22 13:41:31.423010 [2025-02-22 13:41:31] INFO: Generating the pages of 1 package(s) [2025-02-22 13:41:31] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/arm64/python-biom-format didn't produce a buildlog, even though it has been built. [2025-02-22 13:41:31] INFO: Finished at 2025-02-22 13:41:31.892885, took: 0:00:00.469881 Sat Feb 22 13:41:31 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/arm64/python-biom-format.html Sat Feb 22 13:41:31 UTC 2025 I: Submitting .buildinfo files to external archives: Sat Feb 22 13:41:31 UTC 2025 I: Submitting 16K b1/python-biom-format_2.1.16-1_arm64.buildinfo.asc https://buildinfo.debian.net/4f8bb62896cc2919014f2990f41c041fcaa9244e/python-biom-format_2.1.16-1_all Sat Feb 22 13:41:37 UTC 2025 I: Submitting 16K b2/python-biom-format_2.1.16-1_arm64.buildinfo.asc https://buildinfo.debian.net/68f491e0b7be41a56c0fa2dd00d033c476b24078/python-biom-format_2.1.16-1_all Sat Feb 22 13:41:42 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Feb 22 13:41:42 UTC 2025 I: Done submitting .buildinfo files. Sat Feb 22 13:41:42 UTC 2025 I: Removing signed python-biom-format_2.1.16-1_arm64.buildinfo.asc files: removed './b1/python-biom-format_2.1.16-1_arm64.buildinfo.asc' removed './b2/python-biom-format_2.1.16-1_arm64.buildinfo.asc' 1740231702 arm64 trixie python-biom-format Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/python-biom-format_2.1.16-1.rbuild.log: 89.9% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/python-biom-format_2.1.16-1.rbuild.log.gz [2025-02-22 13:41:43] INFO: Starting at 2025-02-22 13:41:43.076885 [2025-02-22 13:41:43] INFO: Generating the pages of 1 package(s) [2025-02-22 13:41:43] INFO: Finished at 2025-02-22 13:41:43.527026, took: 0:00:00.450149 All cleanup done. Sat Feb 22 13:41:43 UTC 2025 - total duration: 0h 6m 7s. Sat Feb 22 13:41:43 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-N4l9JGXj, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 6min 19.984s CPU time consumed: 7.907s