Running as unit: rb-build-arm64_4-58360.service ==================================================================================== Sat Feb 22 13:47:03 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_4) on jenkins, called using "codethink03-arm64 codethink04-arm64" as arguments. Sat Feb 22 13:47:03 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-Dzu9mo05" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Feb 22 13:47:03 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Sat Feb 22 13:47:03 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-lPt3oY' Sat Feb 22 13:47:04 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Sat Feb 22 13:47:04 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-9D5el5' ok, let's check if python-pyfaidx is building anywhere yet… ok, python-pyfaidx is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of python-pyfaidx in unstable on arm64 on jenkins now. 1st build will be done on codethink03-arm64.debian.net. 2nd build will be done on codethink04-arm64.debian.net. ============================================================================= Sat Feb 22 13:47:21 UTC 2025 I: starting to build python-pyfaidx/unstable/arm64 on jenkins on '2025-02-22 13:47' Sat Feb 22 13:47:21 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_4/58360/console.log 1740232041 arm64 unstable python-pyfaidx Sat Feb 22 13:47:21 UTC 2025 I: Downloading source for unstable/python-pyfaidx=0.8.1.3-1 --2025-02-22 13:47:21-- http://deb.debian.org/debian/pool/main/p/python-pyfaidx/python-pyfaidx_0.8.1.3-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2544 (2.5K) [text/prs.lines.tag] Saving to: ‘python-pyfaidx_0.8.1.3-1.dsc’ 0K .. 100% 300M=0s 2025-02-22 13:47:21 (300 MB/s) - ‘python-pyfaidx_0.8.1.3-1.dsc’ saved [2544/2544] --2025-02-22 13:47:21-- http://deb.debian.org/debian/pool/main/p/python-pyfaidx/python-pyfaidx_0.8.1.3-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2544 (2.5K) [text/prs.lines.tag] Saving to: ‘python-pyfaidx_0.8.1.3-1.dsc’ 0K .. 100% 300M=0s 2025-02-22 13:47:21 (300 MB/s) - ‘python-pyfaidx_0.8.1.3-1.dsc’ saved [2544/2544] Sat Feb 22 13:47:21 UTC 2025 I: python-pyfaidx_0.8.1.3-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-pyfaidx Binary: python3-pyfaidx, python-pyfaidx-examples Architecture: all Version: 0.8.1.3-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/mdshw5/pyfaidx Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/python-pyfaidx Vcs-Git: https://salsa.debian.org/med-team/python-pyfaidx.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: python3-all, python3-biopython, python3-numpy, python3-pytest, tabix Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-coverage, python3-setuptools, python3-setuptools-scm, python3-biopython, python3-importlib-metadata , python3-numpy , pybuild-plugin-pyproject, python3-pytest , samtools , tabix Package-List: python-pyfaidx-examples deb python optional arch=all python3-pyfaidx deb python optional arch=all Checksums-Sha1: f669b56108167d187d7c35f5e5c933eaf87d0300 96521 python-pyfaidx_0.8.1.3.orig.tar.gz ddaa62d1e5495d88784cfc182b2c9262573c911e 7096 python-pyfaidx_0.8.1.3-1.debian.tar.xz Checksums-Sha256: 2d1bac6f3f6bbe64d42d79ad18750d0c8cfc01d65f05e6e99b1a2e1120dcaa39 96521 python-pyfaidx_0.8.1.3.orig.tar.gz e80e89918e2ca94b44bd5c4c6c0c2d42cfd75adade7e164360afcfcdc128925f 7096 python-pyfaidx_0.8.1.3-1.debian.tar.xz Files: f10ed48a512bf956fc15eb40b0293b10 96521 python-pyfaidx_0.8.1.3.orig.tar.gz 76e2d37dc31e90d44074e92bf4eaeaf2 7096 python-pyfaidx_0.8.1.3-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmcQEgwUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdq7Hw/9Fnf0oC6HxBjPoVzyhJ//Lqt6L6Qi kLYhdsDMT+2QhHAd1g6fNrLq7IIpnWDBOS/paGJGI9O8M+/A0V6y3RAamPcnO1LN ejD1cSRBhehKMIyLf6+D2a3ebHsxvoTyOZPmsm7Xm8sYnIQWQragpshQvvVCTGXQ S5Uw7lDwV5Mexen6HvSrjXofl3MyS2KUQU6Aay68jT4I33QIq5iLG2NK2xrkioYZ CCJwlYYdTA+rqmtEwZYFa7ypF/Fny1l0esfdKTuBkQrNuVwN4shBTRX0ii9wG5cd LpIN2q4SuJKsyWnRrrsLC0IAznoPa6lxTBPqN2/+g2w7aAERwsVpLMQryd+i8qGR UjhR8TG/0ABlLzrXOEr0dM5CgRfMxHCF7yOPNzMCOOkn/Y7bbuvDfB6xfrzKqfTO Nap6fLx3f21+Bl/V/JleDN9W/E3bmYOxTS4X+jx9ysact6te0j/TMwLb3qQYEoGh GG/4jXYsoEUM2Nf6QKjFdXWqC91Z5EReK6meNLcnrcvM5OshxbvTdP8uRHatIPTm UYD/9c5JW+QNjTz1UIjkLE9BwRwIpYFyfXc+XZSHQgv32F4D+J8Ng7tpDsqj6SRJ HUxaRmhcY4Gq3Xo0ic1DCwl05lawncvAql06S8n50FRFpbf4V1QKftUJV/AjUJ23 rp8vci0tSpcvPsc= =Mg5j -----END PGP SIGNATURE----- Sat Feb 22 13:47:21 UTC 2025 I: Checking whether the package is not for us Sat Feb 22 13:47:21 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Sat Feb 22 13:47:21 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Sat Feb 22 13:47:21 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Sat Feb 22 13:47:21 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-XPwZ0J' ==================================================================================== Fri Mar 27 20:10:22 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "1 python-pyfaidx unstable /srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7 0.8.1.3-1" as arguments. Fri Mar 27 20:10:22 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-kEnwwVze" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Mar 27 20:10:22 UTC 2026 I: Downloading source for unstable/python-pyfaidx=0.8.1.3-1 Reading package lists... NOTICE: 'python-pyfaidx' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-pyfaidx.git Please use: git clone https://salsa.debian.org/med-team/python-pyfaidx.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 106 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main python-pyfaidx 0.8.1.3-1 (dsc) [2544 B] Get:2 http://deb.debian.org/debian unstable/main python-pyfaidx 0.8.1.3-1 (tar) [96.5 kB] Get:3 http://deb.debian.org/debian unstable/main python-pyfaidx 0.8.1.3-1 (diff) [7096 B] Fetched 106 kB in 0s (1124 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'python-pyfaidx' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-pyfaidx.git Please use: git clone https://salsa.debian.org/med-team/python-pyfaidx.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 106 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main python-pyfaidx 0.8.1.3-1 (dsc) [2544 B] Get:2 http://deb.debian.org/debian unstable/main python-pyfaidx 0.8.1.3-1 (tar) [96.5 kB] Get:3 http://deb.debian.org/debian unstable/main python-pyfaidx 0.8.1.3-1 (diff) [7096 B] Fetched 106 kB in 0s (1124 kB/s) Download complete and in download only mode ============================================================================= Building python-pyfaidx in unstable on arm64 on codethink03-arm64 now. Date: Fri Mar 27 20:10:23 GMT 2026 Date UTC: Fri Mar 27 20:10:23 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Mar 27 08:10:23 -12 2026 I: pbuilder-time-stamp: 1774642223 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pyfaidx_0.8.1.3-1.dsc] I: copying [./python-pyfaidx_0.8.1.3.orig.tar.gz] I: copying [./python-pyfaidx_0.8.1.3-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-pyfaidx_0.8.1.3-1.dsc: unsupported subcommand dpkg-source: info: extracting python-pyfaidx in python-pyfaidx-0.8.1.3 dpkg-source: info: unpacking python-pyfaidx_0.8.1.3.orig.tar.gz dpkg-source: info: unpacking python-pyfaidx_0.8.1.3-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying test-locale-to-c.patch dpkg-source: info: applying remove-ignore-docstring.patch dpkg-source: info: applying manual-layout.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3517019/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='189ce719c8bc4530adcc4171ce2e345d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3517019' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7/pbuilderrc_bnSo --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7/b1 --logfile b1/build.log python-pyfaidx_0.8.1.3-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3517019/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-coverage, python3-setuptools, python3-setuptools-scm, python3-biopython, python3-importlib-metadata, python3-numpy, pybuild-plugin-pyproject, python3-pytest, samtools, tabix dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19889 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-coverage; however: Package python3-coverage is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools-scm; however: Package python3-setuptools-scm is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-importlib-metadata; however: Package python3-importlib-metadata is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on tabix; however: Package tabix is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-0{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} libldap2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libopenjp2-7{a} libp11-kit0{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libtasn1-6{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a} python3-autocommand{a} python3-biopython{a} python3-build{a} python3-cairo{a} python3-chardet{a} python3-coverage{a} python3-freetype{a} python3-importlib-metadata{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyproject-hooks{a} python3-pytest{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-setuptools-scm{a} python3-toml{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} samtools{a} sensible-utils{a} sgml-base{a} tabix{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx ncbi-blast+ publicsuffix python-biopython-doc python3-olefile python3-pygments shared-mime-info wget xdg-user-dirs 0 packages upgraded, 158 newly installed, 0 to remove and 0 not upgraded. Need to get 70.5 MB of archives. After unpacking 269 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.2-1 [853 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.2-1 [1997 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.1-2 [27.0 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 12.0.0 [28.9 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025a-2 [259 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.2-1 [1914 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.2-1 [745 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.1-2 [9952 B] Get: 14 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.1-2 [28.0 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 python3-numpy-dev arm64 1:2.2.3+ds-2 [135 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.1-2 [104 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 14.2.0-17 [361 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.1-2 [1819 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 python3-numpy arm64 1:2.2.3+ds-2 [4134 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libpython3.12-minimal arm64 3.12.9-1 [810 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 python3.12-minimal arm64 3.12.9-1 [1941 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 sgml-base all 1.31 [15.4 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-4 [92.1 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-3 [862 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-3 [539 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 44 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 python3-importlib-metadata all 8.6.1-1 [21.4 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 61 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 75.8.0-1 [222 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 75.8.0-1 [724 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20250108 [113 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libfontenc1 arm64 1:1.1.8-1+b2 [22.5 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.47-1 [274 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+24 [217 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 xfonts-utils arm64 1:7.7+7 [89.3 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 76 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-2 [317 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-2 [386 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.10-1.1+b4 [27.2 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libcairo2 arm64 1.18.2-2 [483 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 97 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.9.1-1 [109 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.9.1-1 [17.3 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.12.1-2 [336 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-1+b1 [42.5 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.83.4-1 [1422 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 10.2.0-1 [443 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 libhtscodecs2 arm64 1.6.1-2 [74.7 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 libhts3t64 arm64 1.21+ds-1 [426 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 libimagequant0 arm64 2.18.0-1+b2 [34.6 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3.1 [173 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 libncurses6 arm64 6.5+20250216-1 [96.1 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 libopenjp2-7 arm64 2.5.3-1 [189 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 libpython3.12-stdlib arm64 3.12.9-1 [1909 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 libraqm0 arm64 0.10.2-1 [13.6 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 132 http://deb.debian.org/debian unstable/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [113 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB] Get: 134 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 24.2-1 [55.3 kB] Get: 135 http://deb.debian.org/debian unstable/main arm64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 136 http://deb.debian.org/debian unstable/main arm64 python3-toml all 0.10.2-1 [16.2 kB] Get: 137 http://deb.debian.org/debian unstable/main arm64 python3-wheel all 0.45.1-1 [56.7 kB] Get: 138 http://deb.debian.org/debian unstable/main arm64 python3-build all 1.2.2-1 [36.0 kB] Get: 139 http://deb.debian.org/debian unstable/main arm64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 pybuild-plugin-pyproject all 6.20250108 [11.6 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 python3.12 arm64 3.12.9-1 [681 kB] Get: 142 http://deb.debian.org/debian unstable/main arm64 python3-all arm64 3.13.1-2 [1056 B] Get: 143 http://deb.debian.org/debian unstable/main arm64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 144 http://deb.debian.org/debian unstable/main arm64 python3-pil arm64 11.1.0-5 [514 kB] Get: 145 http://deb.debian.org/debian unstable/main arm64 python3-cairo arm64 1.26.1-2+b1 [130 kB] Get: 146 http://deb.debian.org/debian unstable/main arm64 python3-freetype all 2.5.1-1 [89.3 kB] Get: 147 http://deb.debian.org/debian unstable/main arm64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 148 http://deb.debian.org/debian unstable/main arm64 python3-reportlab all 4.3.1-1 [1158 kB] Get: 149 http://deb.debian.org/debian unstable/main arm64 xml-core all 0.19 [20.1 kB] Get: 150 http://deb.debian.org/debian unstable/main arm64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 151 http://deb.debian.org/debian unstable/main arm64 python3-biopython arm64 1.85+dfsg-2 [1662 kB] Get: 152 http://deb.debian.org/debian unstable/main arm64 python3-coverage arm64 7.6.0+dfsg1-2+b1 [177 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 154 http://deb.debian.org/debian unstable/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 155 http://deb.debian.org/debian unstable/main arm64 python3-pytest all 8.3.4-1 [250 kB] Get: 156 http://deb.debian.org/debian unstable/main arm64 python3-setuptools-scm all 8.1.0-1 [40.5 kB] Get: 157 http://deb.debian.org/debian unstable/main arm64 samtools arm64 1.21-1 [637 kB] Get: 158 http://deb.debian.org/debian unstable/main arm64 tabix arm64 1.21+ds-1 [461 kB] Fetched 70.5 MB in 1s (84.1 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19889 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.2-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.2-1_arm64.deb ... Unpacking python3.13-minimal (3.13.2-1) ... Setting up libpython3.13-minimal:arm64 (3.13.2-1) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.13-minimal (3.13.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20223 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.1-2_arm64.deb ... Unpacking python3-minimal (3.13.1-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_12.0.0_all.deb ... Unpacking media-types (12.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025a-2_all.deb ... Unpacking tzdata (2025a-2) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.4.7-1_arm64.deb ... Unpacking libffi8:arm64 (3.4.7-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.2-6_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_arm64.deb ... Unpacking python3.13 (3.13.2-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.13.1-2_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.13.1-2) ... Setting up python3-minimal (3.13.1-2) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21233 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.1-2_arm64.deb ... Unpacking python3 (3.13.1-2) ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../111-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package libopenjp2-7:arm64. Preparing to unpack .../112-libopenjp2-7_2.5.3-1_arm64.deb ... Unpacking libopenjp2-7:arm64 (2.5.3-1) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../113-libpython3.12-stdlib_3.12.9-1_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.9-1) ... Selecting previously unselected package libraqm0:arm64. Preparing to unpack .../114-libraqm0_0.10.2-1_arm64.deb ... Unpacking libraqm0:arm64 (0.10.2-1) ... 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Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.85+dfsg-2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-pyfaidx-0.8.1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pyfaidx_0.8.1.3-1_source.changes dpkg-buildpackage: info: source package python-pyfaidx dpkg-buildpackage: info: source version 0.8.1.3-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean LC_ALL=C.UTF-8 dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-pyfaidx-0.8.1.3' dh_auto_clean rm -f .coverage rm -f tests/data/genes.fasta.gz rm -rf pyfaidx.egg-info make[1]: Leaving directory '/build/reproducible-path/python-pyfaidx-0.8.1.3' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary LC_ALL=C.UTF-8 dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.12_pyfaidx * Building wheel... running bdist_wheel running build running build_py creating build/lib/pyfaidx copying pyfaidx/cli.py -> build/lib/pyfaidx copying pyfaidx/__init__.py -> build/lib/pyfaidx running egg_info creating pyfaidx.egg-info writing pyfaidx.egg-info/PKG-INFO writing dependency_links to pyfaidx.egg-info/dependency_links.txt writing entry points to pyfaidx.egg-info/entry_points.txt writing requirements to pyfaidx.egg-info/requires.txt writing top-level names to pyfaidx.egg-info/top_level.txt writing manifest file 'pyfaidx.egg-info/SOURCES.txt' reading manifest file 'pyfaidx.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'docs/build/html/*' adding license file 'LICENSE' writing manifest file 'pyfaidx.egg-info/SOURCES.txt' installing to build/bdist.linux-aarch64/wheel running install running install_lib creating build/bdist.linux-aarch64/wheel creating build/bdist.linux-aarch64/wheel/pyfaidx copying build/lib/pyfaidx/__init__.py -> build/bdist.linux-aarch64/wheel/./pyfaidx copying build/lib/pyfaidx/cli.py -> build/bdist.linux-aarch64/wheel/./pyfaidx running install_egg_info Copying pyfaidx.egg-info to build/bdist.linux-aarch64/wheel/./pyfaidx-0.8.1.3.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/pyfaidx-0.8.1.3.dist-info/WHEEL creating '/build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.12_pyfaidx/.tmp-hza304mh/pyfaidx-0.8.1.3-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'pyfaidx/__init__.py' adding 'pyfaidx/cli.py' adding 'pyfaidx-0.8.1.3.dist-info/LICENSE' adding 'pyfaidx-0.8.1.3.dist-info/METADATA' adding 'pyfaidx-0.8.1.3.dist-info/WHEEL' adding 'pyfaidx-0.8.1.3.dist-info/entry_points.txt' adding 'pyfaidx-0.8.1.3.dist-info/top_level.txt' adding 'pyfaidx-0.8.1.3.dist-info/RECORD' removing build/bdist.linux-aarch64/wheel Successfully built pyfaidx-0.8.1.3-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.13_pyfaidx * Building wheel... running bdist_wheel running build running build_py running egg_info writing pyfaidx.egg-info/PKG-INFO writing dependency_links to pyfaidx.egg-info/dependency_links.txt writing entry points to pyfaidx.egg-info/entry_points.txt writing requirements to pyfaidx.egg-info/requires.txt writing top-level names to pyfaidx.egg-info/top_level.txt reading manifest file 'pyfaidx.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'docs/build/html/*' adding license file 'LICENSE' writing manifest file 'pyfaidx.egg-info/SOURCES.txt' installing to build/bdist.linux-aarch64/wheel running install running install_lib creating build/bdist.linux-aarch64/wheel creating build/bdist.linux-aarch64/wheel/pyfaidx copying build/lib/pyfaidx/__init__.py -> build/bdist.linux-aarch64/wheel/./pyfaidx copying build/lib/pyfaidx/cli.py -> build/bdist.linux-aarch64/wheel/./pyfaidx running install_egg_info Copying pyfaidx.egg-info to build/bdist.linux-aarch64/wheel/./pyfaidx-0.8.1.3.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/pyfaidx-0.8.1.3.dist-info/WHEEL creating '/build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.13_pyfaidx/.tmp-u4stukfi/pyfaidx-0.8.1.3-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'pyfaidx/__init__.py' adding 'pyfaidx/cli.py' adding 'pyfaidx-0.8.1.3.dist-info/LICENSE' adding 'pyfaidx-0.8.1.3.dist-info/METADATA' adding 'pyfaidx-0.8.1.3.dist-info/WHEEL' adding 'pyfaidx-0.8.1.3.dist-info/entry_points.txt' adding 'pyfaidx-0.8.1.3.dist-info/top_level.txt' adding 'pyfaidx-0.8.1.3.dist-info/RECORD' removing build/bdist.linux-aarch64/wheel Successfully built pyfaidx-0.8.1.3-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/python-pyfaidx-0.8.1.3' bgzip -c tests/data/genes.fasta > tests/data/genes.fasta.gz dh_auto_test I: pybuild base:311: cd /build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.12_pyfaidx/build; python3.12 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.12.9, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.12_pyfaidx/build configfile: pyproject.toml plugins: typeguard-4.4.1 collected 136 items tests/test_FastaRecord.py ..... [ 3%] tests/test_FastaRecord_iter.py ... [ 5%] tests/test_FastaVariant.py ssssss [ 10%] tests/test_Fasta_bgzip.py x.....x..................... [ 30%] tests/test_Fasta_integer_index.py .. [ 32%] tests/test_Fasta_synchronization.py ... [ 34%] tests/test_Path.py .. [ 36%] tests/test_bio_seqio.py ... [ 38%] tests/test_faidx.py ......... [ 44%] tests/test_feature_bounds_check.py ........................ [ 62%] tests/test_feature_default_seq.py . [ 63%] tests/test_feature_indexing.py ............... [ 74%] tests/test_feature_key_function.py ...... [ 78%] tests/test_feature_read_ahead_buffer.py ..... [ 82%] tests/test_feature_sequence_as_raw.py ..... [ 86%] tests/test_feature_spliced_seq.py .. [ 87%] tests/test_feature_split_char.py .... [ 90%] tests/test_fsspec.py ssss [ 93%] tests/test_sequence_class.py ......... [100%] ================== 124 passed, 10 skipped, 2 xfailed in 9.79s ================== I: pybuild base:311: cd /build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.13_pyfaidx/build; python3.13 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.13_pyfaidx/build configfile: pyproject.toml plugins: typeguard-4.4.1 collected 136 items tests/test_FastaRecord.py ..... [ 3%] tests/test_FastaRecord_iter.py ... [ 5%] tests/test_FastaVariant.py ssssss [ 10%] tests/test_Fasta_bgzip.py x.....x..................... [ 30%] tests/test_Fasta_integer_index.py .. [ 32%] tests/test_Fasta_synchronization.py ... [ 34%] tests/test_Path.py .. [ 36%] tests/test_bio_seqio.py ... [ 38%] tests/test_faidx.py ......... [ 44%] tests/test_feature_bounds_check.py ........................ [ 62%] tests/test_feature_default_seq.py . [ 63%] tests/test_feature_indexing.py ............... [ 74%] tests/test_feature_key_function.py ...... [ 78%] tests/test_feature_read_ahead_buffer.py ..... [ 82%] tests/test_feature_sequence_as_raw.py ..... [ 86%] tests/test_feature_spliced_seq.py .. [ 87%] tests/test_feature_split_char.py .... [ 90%] tests/test_fsspec.py ssss [ 93%] tests/test_sequence_class.py ......... [100%] ================== 124 passed, 10 skipped, 2 xfailed in 8.59s ================== rm tests/data/genes.fasta.gz make[1]: Leaving directory '/build/reproducible-path/python-pyfaidx-0.8.1.3' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/python-pyfaidx-0.8.1.3' dh_compress --exclude=gz.tbi make[1]: Leaving directory '/build/reproducible-path/python-pyfaidx-0.8.1.3' dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pyfaidx' in '../python3-pyfaidx_0.8.1.3-1_all.deb'. dpkg-deb: building package 'python-pyfaidx-examples' in '../python-pyfaidx-examples_0.8.1.3-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-pyfaidx_0.8.1.3-1_arm64.buildinfo dpkg-genchanges --build=binary -O../python-pyfaidx_0.8.1.3-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3517019 and its subdirectories I: Current time: Fri Mar 27 08:12:41 -12 2026 I: pbuilder-time-stamp: 1774642361 Fri Mar 27 20:12:41 UTC 2026 I: Signing ./b1/python-pyfaidx_0.8.1.3-1_arm64.buildinfo as python-pyfaidx_0.8.1.3-1_arm64.buildinfo.asc Fri Mar 27 20:12:41 UTC 2026 I: Signed ./b1/python-pyfaidx_0.8.1.3-1_arm64.buildinfo as ./b1/python-pyfaidx_0.8.1.3-1_arm64.buildinfo.asc Fri Mar 27 20:12:41 UTC 2026 - build #1 for python-pyfaidx/unstable/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Fri Mar 27 20:12:41 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-kEnwwVze, removing. /srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 13:49 b1 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 13:47 b2 -rw-r--r-- 1 jenkins jenkins 2544 Oct 16 19:33 python-pyfaidx_0.8.1.3-1.dsc -rw------- 1 jenkins jenkins 3712 Feb 22 13:47 rbuildlog.CivvlwY /srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7/b1: total 284 -rw-r--r-- 1 jenkins jenkins 74801 Feb 22 13:49 build.log -rw-r--r-- 1 jenkins jenkins 34184 Feb 22 13:49 python-pyfaidx-examples_0.8.1.3-1_all.deb -rw-r--r-- 1 jenkins jenkins 7096 Feb 22 13:49 python-pyfaidx_0.8.1.3-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2544 Feb 22 13:49 python-pyfaidx_0.8.1.3-1.dsc -rw-r--r-- 1 jenkins jenkins 8917 Feb 22 13:49 python-pyfaidx_0.8.1.3-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 9799 Feb 22 13:49 python-pyfaidx_0.8.1.3-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1620 Feb 22 13:49 python-pyfaidx_0.8.1.3-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 1642 Feb 22 13:49 python-pyfaidx_0.8.1.3-1_source.changes -rw-r--r-- 1 jenkins jenkins 96521 Feb 22 13:49 python-pyfaidx_0.8.1.3.orig.tar.gz -rw-r--r-- 1 jenkins jenkins 29064 Feb 22 13:49 python3-pyfaidx_0.8.1.3-1_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7/b2: total 0 Sat Feb 22 13:49:42 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Mar 27 08:10:23 -12 2026 I: pbuilder-time-stamp: 1774642223 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pyfaidx_0.8.1.3-1.dsc] I: copying [./python-pyfaidx_0.8.1.3.orig.tar.gz] I: copying [./python-pyfaidx_0.8.1.3-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-pyfaidx_0.8.1.3-1.dsc: unsupported subcommand dpkg-source: info: extracting python-pyfaidx in python-pyfaidx-0.8.1.3 dpkg-source: info: unpacking python-pyfaidx_0.8.1.3.orig.tar.gz dpkg-source: info: unpacking python-pyfaidx_0.8.1.3-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying test-locale-to-c.patch dpkg-source: info: applying remove-ignore-docstring.patch dpkg-source: info: applying manual-layout.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3517019/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='189ce719c8bc4530adcc4171ce2e345d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3517019' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7/pbuilderrc_bnSo --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7/b1 --logfile b1/build.log python-pyfaidx_0.8.1.3-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3517019/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-coverage, python3-setuptools, python3-setuptools-scm, python3-biopython, python3-importlib-metadata, python3-numpy, pybuild-plugin-pyproject, python3-pytest, samtools, tabix dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19889 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-coverage; however: Package python3-coverage is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools-scm; however: Package python3-setuptools-scm is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-importlib-metadata; however: Package python3-importlib-metadata is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on tabix; however: Package tabix is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-0{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} libldap2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libopenjp2-7{a} libp11-kit0{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libtasn1-6{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a} python3-autocommand{a} python3-biopython{a} python3-build{a} python3-cairo{a} python3-chardet{a} python3-coverage{a} python3-freetype{a} python3-importlib-metadata{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyproject-hooks{a} python3-pytest{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-setuptools-scm{a} python3-toml{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} samtools{a} sensible-utils{a} sgml-base{a} tabix{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx ncbi-blast+ publicsuffix python-biopython-doc python3-olefile python3-pygments shared-mime-info wget xdg-user-dirs 0 packages upgraded, 158 newly installed, 0 to remove and 0 not upgraded. Need to get 70.5 MB of archives. After unpacking 269 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.2-1 [853 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.2-1 [1997 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.1-2 [27.0 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 12.0.0 [28.9 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025a-2 [259 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.2-1 [1914 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.2-1 [745 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.1-2 [9952 B] Get: 14 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.1-2 [28.0 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 python3-numpy-dev arm64 1:2.2.3+ds-2 [135 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.1-2 [104 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 14.2.0-17 [361 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.1-2 [1819 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 python3-numpy arm64 1:2.2.3+ds-2 [4134 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libpython3.12-minimal arm64 3.12.9-1 [810 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 python3.12-minimal arm64 3.12.9-1 [1941 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 sgml-base all 1.31 [15.4 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-4 [92.1 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-3 [862 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-3 [539 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 44 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 python3-importlib-metadata all 8.6.1-1 [21.4 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 61 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 75.8.0-1 [222 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 75.8.0-1 [724 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20250108 [113 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libfontenc1 arm64 1:1.1.8-1+b2 [22.5 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.47-1 [274 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+24 [217 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 xfonts-utils arm64 1:7.7+7 [89.3 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 76 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-2 [317 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-2 [386 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.10-1.1+b4 [27.2 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libcairo2 arm64 1.18.2-2 [483 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 97 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.9.1-1 [109 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.9.1-1 [17.3 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.12.1-2 [336 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-1+b1 [42.5 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.83.4-1 [1422 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 10.2.0-1 [443 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 libhtscodecs2 arm64 1.6.1-2 [74.7 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 libhts3t64 arm64 1.21+ds-1 [426 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 libimagequant0 arm64 2.18.0-1+b2 [34.6 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3.1 [173 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 libncurses6 arm64 6.5+20250216-1 [96.1 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 libopenjp2-7 arm64 2.5.3-1 [189 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 libpython3.12-stdlib arm64 3.12.9-1 [1909 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 libraqm0 arm64 0.10.2-1 [13.6 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 132 http://deb.debian.org/debian unstable/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [113 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB] Get: 134 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 24.2-1 [55.3 kB] Get: 135 http://deb.debian.org/debian unstable/main arm64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 136 http://deb.debian.org/debian unstable/main arm64 python3-toml all 0.10.2-1 [16.2 kB] Get: 137 http://deb.debian.org/debian unstable/main arm64 python3-wheel all 0.45.1-1 [56.7 kB] Get: 138 http://deb.debian.org/debian unstable/main arm64 python3-build all 1.2.2-1 [36.0 kB] Get: 139 http://deb.debian.org/debian unstable/main arm64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 pybuild-plugin-pyproject all 6.20250108 [11.6 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 python3.12 arm64 3.12.9-1 [681 kB] Get: 142 http://deb.debian.org/debian unstable/main arm64 python3-all arm64 3.13.1-2 [1056 B] Get: 143 http://deb.debian.org/debian unstable/main arm64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 144 http://deb.debian.org/debian unstable/main arm64 python3-pil arm64 11.1.0-5 [514 kB] Get: 145 http://deb.debian.org/debian unstable/main arm64 python3-cairo arm64 1.26.1-2+b1 [130 kB] Get: 146 http://deb.debian.org/debian unstable/main arm64 python3-freetype all 2.5.1-1 [89.3 kB] Get: 147 http://deb.debian.org/debian unstable/main arm64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 148 http://deb.debian.org/debian unstable/main arm64 python3-reportlab all 4.3.1-1 [1158 kB] Get: 149 http://deb.debian.org/debian unstable/main arm64 xml-core all 0.19 [20.1 kB] Get: 150 http://deb.debian.org/debian unstable/main arm64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 151 http://deb.debian.org/debian unstable/main arm64 python3-biopython arm64 1.85+dfsg-2 [1662 kB] Get: 152 http://deb.debian.org/debian unstable/main arm64 python3-coverage arm64 7.6.0+dfsg1-2+b1 [177 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 154 http://deb.debian.org/debian unstable/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 155 http://deb.debian.org/debian unstable/main arm64 python3-pytest all 8.3.4-1 [250 kB] Get: 156 http://deb.debian.org/debian unstable/main arm64 python3-setuptools-scm all 8.1.0-1 [40.5 kB] Get: 157 http://deb.debian.org/debian unstable/main arm64 samtools arm64 1.21-1 [637 kB] Get: 158 http://deb.debian.org/debian unstable/main arm64 tabix arm64 1.21+ds-1 [461 kB] Fetched 70.5 MB in 1s (84.1 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19889 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.2-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.2-1_arm64.deb ... Unpacking python3.13-minimal (3.13.2-1) ... Setting up libpython3.13-minimal:arm64 (3.13.2-1) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.13-minimal (3.13.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20223 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.1-2_arm64.deb ... Unpacking python3-minimal (3.13.1-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_12.0.0_all.deb ... Unpacking media-types (12.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025a-2_all.deb ... Unpacking tzdata (2025a-2) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.4.7-1_arm64.deb ... Unpacking libffi8:arm64 (3.4.7-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.2-6_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_arm64.deb ... Unpacking python3.13 (3.13.2-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.13.1-2_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.13.1-2) ... Setting up python3-minimal (3.13.1-2) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21233 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.1-2_arm64.deb ... Unpacking python3 (3.13.1-2) ... Selecting previously unselected package python3-numpy-dev:arm64. Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.3+ds-2_arm64.deb ... Unpacking python3-numpy-dev:arm64 (1:2.2.3+ds-2) ... Selecting previously unselected package libblas3:arm64. Preparing to unpack .../002-libblas3_3.12.1-2_arm64.deb ... Unpacking libblas3:arm64 (3.12.1-2) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../003-libgfortran5_14.2.0-17_arm64.deb ... Unpacking libgfortran5:arm64 (14.2.0-17) ... Selecting previously unselected package liblapack3:arm64. Preparing to unpack .../004-liblapack3_3.12.1-2_arm64.deb ... Unpacking liblapack3:arm64 (3.12.1-2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../005-python3-numpy_1%3a2.2.3+ds-2_arm64.deb ... Unpacking python3-numpy (1:2.2.3+ds-2) ... Selecting previously unselected package libpython3.12-minimal:arm64. Preparing to unpack .../006-libpython3.12-minimal_3.12.9-1_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.9-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../007-python3.12-minimal_3.12.9-1_arm64.deb ... Unpacking python3.12-minimal (3.12.9-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../008-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../009-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../010-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../011-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../012-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../013-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../014-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../015-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../016-bsdextrautils_2.40.4-4_arm64.deb ... Unpacking bsdextrautils (2.40.4-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../017-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../018-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../019-m4_1.4.19-5_arm64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../020-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../021-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../022-automake_1%3a1.17-3_all.deb ... Unpacking automake (1:1.17-3) ... Selecting previously unselected package autopoint. Preparing to unpack .../023-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../024-libdebhelper-perl_13.24.1_all.deb ... Unpacking libdebhelper-perl (13.24.1) ... Selecting previously unselected package libtool. Preparing to unpack .../025-libtool_2.5.4-3_all.deb ... Unpacking libtool (2.5.4-3) ... 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Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../032-libunistring5_1.3-1_arm64.deb ... Unpacking libunistring5:arm64 (1.3-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../033-libicu72_72.1-6_arm64.deb ... Unpacking libicu72:arm64 (72.1-6) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../034-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../035-gettext_0.23.1-1_arm64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../036-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../037-po-debconf_1.0.21+nmu1_all.deb ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../111-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package libopenjp2-7:arm64. Preparing to unpack .../112-libopenjp2-7_2.5.3-1_arm64.deb ... Unpacking libopenjp2-7:arm64 (2.5.3-1) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../113-libpython3.12-stdlib_3.12.9-1_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.9-1) ... Selecting previously unselected package libraqm0:arm64. Preparing to unpack .../114-libraqm0_0.10.2-1_arm64.deb ... Unpacking libraqm0:arm64 (0.10.2-1) ... 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Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.85+dfsg-2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-pyfaidx-0.8.1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pyfaidx_0.8.1.3-1_source.changes dpkg-buildpackage: info: source package python-pyfaidx dpkg-buildpackage: info: source version 0.8.1.3-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean LC_ALL=C.UTF-8 dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-pyfaidx-0.8.1.3' dh_auto_clean rm -f .coverage rm -f tests/data/genes.fasta.gz rm -rf pyfaidx.egg-info make[1]: Leaving directory '/build/reproducible-path/python-pyfaidx-0.8.1.3' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary LC_ALL=C.UTF-8 dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.12_pyfaidx * Building wheel... running bdist_wheel running build running build_py creating build/lib/pyfaidx copying pyfaidx/cli.py -> build/lib/pyfaidx copying pyfaidx/__init__.py -> build/lib/pyfaidx running egg_info creating pyfaidx.egg-info writing pyfaidx.egg-info/PKG-INFO writing dependency_links to pyfaidx.egg-info/dependency_links.txt writing entry points to pyfaidx.egg-info/entry_points.txt writing requirements to pyfaidx.egg-info/requires.txt writing top-level names to pyfaidx.egg-info/top_level.txt writing manifest file 'pyfaidx.egg-info/SOURCES.txt' reading manifest file 'pyfaidx.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'docs/build/html/*' adding license file 'LICENSE' writing manifest file 'pyfaidx.egg-info/SOURCES.txt' installing to build/bdist.linux-aarch64/wheel running install running install_lib creating build/bdist.linux-aarch64/wheel creating build/bdist.linux-aarch64/wheel/pyfaidx copying build/lib/pyfaidx/__init__.py -> build/bdist.linux-aarch64/wheel/./pyfaidx copying build/lib/pyfaidx/cli.py -> build/bdist.linux-aarch64/wheel/./pyfaidx running install_egg_info Copying pyfaidx.egg-info to build/bdist.linux-aarch64/wheel/./pyfaidx-0.8.1.3.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/pyfaidx-0.8.1.3.dist-info/WHEEL creating '/build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.12_pyfaidx/.tmp-hza304mh/pyfaidx-0.8.1.3-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'pyfaidx/__init__.py' adding 'pyfaidx/cli.py' adding 'pyfaidx-0.8.1.3.dist-info/LICENSE' adding 'pyfaidx-0.8.1.3.dist-info/METADATA' adding 'pyfaidx-0.8.1.3.dist-info/WHEEL' adding 'pyfaidx-0.8.1.3.dist-info/entry_points.txt' adding 'pyfaidx-0.8.1.3.dist-info/top_level.txt' adding 'pyfaidx-0.8.1.3.dist-info/RECORD' removing build/bdist.linux-aarch64/wheel Successfully built pyfaidx-0.8.1.3-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.13_pyfaidx * Building wheel... running bdist_wheel running build running build_py running egg_info writing pyfaidx.egg-info/PKG-INFO writing dependency_links to pyfaidx.egg-info/dependency_links.txt writing entry points to pyfaidx.egg-info/entry_points.txt writing requirements to pyfaidx.egg-info/requires.txt writing top-level names to pyfaidx.egg-info/top_level.txt reading manifest file 'pyfaidx.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'docs/build/html/*' adding license file 'LICENSE' writing manifest file 'pyfaidx.egg-info/SOURCES.txt' installing to build/bdist.linux-aarch64/wheel running install running install_lib creating build/bdist.linux-aarch64/wheel creating build/bdist.linux-aarch64/wheel/pyfaidx copying build/lib/pyfaidx/__init__.py -> build/bdist.linux-aarch64/wheel/./pyfaidx copying build/lib/pyfaidx/cli.py -> build/bdist.linux-aarch64/wheel/./pyfaidx running install_egg_info Copying pyfaidx.egg-info to build/bdist.linux-aarch64/wheel/./pyfaidx-0.8.1.3.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/pyfaidx-0.8.1.3.dist-info/WHEEL creating '/build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.13_pyfaidx/.tmp-u4stukfi/pyfaidx-0.8.1.3-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'pyfaidx/__init__.py' adding 'pyfaidx/cli.py' adding 'pyfaidx-0.8.1.3.dist-info/LICENSE' adding 'pyfaidx-0.8.1.3.dist-info/METADATA' adding 'pyfaidx-0.8.1.3.dist-info/WHEEL' adding 'pyfaidx-0.8.1.3.dist-info/entry_points.txt' adding 'pyfaidx-0.8.1.3.dist-info/top_level.txt' adding 'pyfaidx-0.8.1.3.dist-info/RECORD' removing build/bdist.linux-aarch64/wheel Successfully built pyfaidx-0.8.1.3-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/python-pyfaidx-0.8.1.3' bgzip -c tests/data/genes.fasta > tests/data/genes.fasta.gz dh_auto_test I: pybuild base:311: cd /build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.12_pyfaidx/build; python3.12 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.12.9, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.12_pyfaidx/build configfile: pyproject.toml plugins: typeguard-4.4.1 collected 136 items tests/test_FastaRecord.py ..... [ 3%] tests/test_FastaRecord_iter.py ... [ 5%] tests/test_FastaVariant.py ssssss [ 10%] tests/test_Fasta_bgzip.py x.....x..................... [ 30%] tests/test_Fasta_integer_index.py .. [ 32%] tests/test_Fasta_synchronization.py ... [ 34%] tests/test_Path.py .. [ 36%] tests/test_bio_seqio.py ... [ 38%] tests/test_faidx.py ......... [ 44%] tests/test_feature_bounds_check.py ........................ [ 62%] tests/test_feature_default_seq.py . [ 63%] tests/test_feature_indexing.py ............... [ 74%] tests/test_feature_key_function.py ...... [ 78%] tests/test_feature_read_ahead_buffer.py ..... [ 82%] tests/test_feature_sequence_as_raw.py ..... [ 86%] tests/test_feature_spliced_seq.py .. [ 87%] tests/test_feature_split_char.py .... [ 90%] tests/test_fsspec.py ssss [ 93%] tests/test_sequence_class.py ......... [100%] ================== 124 passed, 10 skipped, 2 xfailed in 9.79s ================== I: pybuild base:311: cd /build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.13_pyfaidx/build; python3.13 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.13_pyfaidx/build configfile: pyproject.toml plugins: typeguard-4.4.1 collected 136 items tests/test_FastaRecord.py ..... [ 3%] tests/test_FastaRecord_iter.py ... [ 5%] tests/test_FastaVariant.py ssssss [ 10%] tests/test_Fasta_bgzip.py x.....x..................... [ 30%] tests/test_Fasta_integer_index.py .. [ 32%] tests/test_Fasta_synchronization.py ... [ 34%] tests/test_Path.py .. [ 36%] tests/test_bio_seqio.py ... [ 38%] tests/test_faidx.py ......... [ 44%] tests/test_feature_bounds_check.py ........................ [ 62%] tests/test_feature_default_seq.py . [ 63%] tests/test_feature_indexing.py ............... [ 74%] tests/test_feature_key_function.py ...... [ 78%] tests/test_feature_read_ahead_buffer.py ..... [ 82%] tests/test_feature_sequence_as_raw.py ..... [ 86%] tests/test_feature_spliced_seq.py .. [ 87%] tests/test_feature_split_char.py .... [ 90%] tests/test_fsspec.py ssss [ 93%] tests/test_sequence_class.py ......... [100%] ================== 124 passed, 10 skipped, 2 xfailed in 8.59s ================== rm tests/data/genes.fasta.gz make[1]: Leaving directory '/build/reproducible-path/python-pyfaidx-0.8.1.3' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/python-pyfaidx-0.8.1.3' dh_compress --exclude=gz.tbi make[1]: Leaving directory '/build/reproducible-path/python-pyfaidx-0.8.1.3' dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pyfaidx' in '../python3-pyfaidx_0.8.1.3-1_all.deb'. dpkg-deb: building package 'python-pyfaidx-examples' in '../python-pyfaidx-examples_0.8.1.3-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-pyfaidx_0.8.1.3-1_arm64.buildinfo dpkg-genchanges --build=binary -O../python-pyfaidx_0.8.1.3-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3517019 and its subdirectories I: Current time: Fri Mar 27 08:12:41 -12 2026 I: pbuilder-time-stamp: 1774642361 Sat Feb 22 13:49:43 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Sat Feb 22 13:49:43 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Sat Feb 22 13:49:43 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Sat Feb 22 13:49:43 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-0141ZJ' ==================================================================================== Sat Feb 22 13:49:44 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "2 python-pyfaidx unstable /srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7 0.8.1.3-1" as arguments. Sat Feb 22 13:49:44 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-X3WqX8mK" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Feb 22 13:49:44 UTC 2025 I: Downloading source for unstable/python-pyfaidx=0.8.1.3-1 Reading package lists... NOTICE: 'python-pyfaidx' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-pyfaidx.git Please use: git clone https://salsa.debian.org/med-team/python-pyfaidx.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 106 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main python-pyfaidx 0.8.1.3-1 (dsc) [2544 B] Get:2 http://deb.debian.org/debian unstable/main python-pyfaidx 0.8.1.3-1 (tar) [96.5 kB] Get:3 http://deb.debian.org/debian unstable/main python-pyfaidx 0.8.1.3-1 (diff) [7096 B] Fetched 106 kB in 0s (10.5 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'python-pyfaidx' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-pyfaidx.git Please use: git clone https://salsa.debian.org/med-team/python-pyfaidx.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 106 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main python-pyfaidx 0.8.1.3-1 (dsc) [2544 B] Get:2 http://deb.debian.org/debian unstable/main python-pyfaidx 0.8.1.3-1 (tar) [96.5 kB] Get:3 http://deb.debian.org/debian unstable/main python-pyfaidx 0.8.1.3-1 (diff) [7096 B] Fetched 106 kB in 0s (10.5 MB/s) Download complete and in download only mode ============================================================================= Re-Building python-pyfaidx in unstable on arm64 on codethink04-arm64 now. Date: Sat Feb 22 13:49:44 GMT 2025 Date UTC: Sat Feb 22 13:49:44 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7 + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7/pbuilderrc_qAX8 + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' python-pyfaidx = debian-installer -o python-pyfaidx = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' python-pyfaidx = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7/pbuilderrc_qAX8 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7/b2 --logfile b2/build.log python-pyfaidx_0.8.1.3-1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Feb 23 03:49:45 +14 2025 I: pbuilder-time-stamp: 1740232185 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pyfaidx_0.8.1.3-1.dsc] I: copying [./python-pyfaidx_0.8.1.3.orig.tar.gz] I: copying [./python-pyfaidx_0.8.1.3-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-pyfaidx_0.8.1.3-1.dsc: unsupported subcommand dpkg-source: info: extracting python-pyfaidx in python-pyfaidx-0.8.1.3 dpkg-source: info: unpacking python-pyfaidx_0.8.1.3.orig.tar.gz dpkg-source: info: unpacking python-pyfaidx_0.8.1.3-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying test-locale-to-c.patch dpkg-source: info: applying remove-ignore-docstring.patch dpkg-source: info: applying manual-layout.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2598287/tmp/hooks/D01_modify_environment starting debug: Running on codethink04-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Feb 22 13:49 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2598287/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2598287/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=8573494953294b67ac22e1d4fbbf2a1c LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2598287 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7/pbuilderrc_qAX8 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7/b2 --logfile b2/build.log python-pyfaidx_0.8.1.3-1.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2598287/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-coverage, python3-setuptools, python3-setuptools-scm, python3-biopython, python3-importlib-metadata, python3-numpy, pybuild-plugin-pyproject, python3-pytest, samtools, tabix dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19889 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-coverage; however: Package python3-coverage is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools-scm; however: Package python3-setuptools-scm is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-importlib-metadata; however: Package python3-importlib-metadata is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on tabix; however: Package tabix is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-0{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} libldap2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libopenjp2-7{a} libp11-kit0{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libtasn1-6{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a} python3-autocommand{a} python3-biopython{a} python3-build{a} python3-cairo{a} python3-chardet{a} python3-coverage{a} python3-freetype{a} python3-importlib-metadata{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyproject-hooks{a} python3-pytest{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-setuptools-scm{a} python3-toml{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} samtools{a} sensible-utils{a} sgml-base{a} tabix{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx ncbi-blast+ publicsuffix python-biopython-doc python3-olefile python3-pygments shared-mime-info wget xdg-user-dirs 0 packages upgraded, 158 newly installed, 0 to remove and 0 not upgraded. Need to get 70.5 MB of archives. After unpacking 269 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.2-1 [853 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.2-1 [1997 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.1-2 [27.0 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 12.0.0 [28.9 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025a-2 [259 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.2-1 [1914 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.2-1 [745 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.1-2 [9952 B] Get: 14 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.1-2 [28.0 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 python3-numpy-dev arm64 1:2.2.3+ds-2 [135 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.1-2 [104 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 14.2.0-17 [361 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.1-2 [1819 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 python3-numpy arm64 1:2.2.3+ds-2 [4134 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libpython3.12-minimal arm64 3.12.9-1 [810 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 python3.12-minimal arm64 3.12.9-1 [1941 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 sgml-base all 1.31 [15.4 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-4 [92.1 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-3 [862 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-3 [539 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 44 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 python3-importlib-metadata all 8.6.1-1 [21.4 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 61 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 75.8.0-1 [222 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 75.8.0-1 [724 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20250108 [113 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libfontenc1 arm64 1:1.1.8-1+b2 [22.5 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.47-1 [274 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+24 [217 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 xfonts-utils arm64 1:7.7+7 [89.3 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 76 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-2 [317 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-2 [386 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.10-1.1+b4 [27.2 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libcairo2 arm64 1.18.2-2 [483 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 97 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.9.1-1 [109 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.9.1-1 [17.3 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.12.1-2 [336 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-1+b1 [42.5 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.83.4-1 [1422 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 10.2.0-1 [443 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 libhtscodecs2 arm64 1.6.1-2 [74.7 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 libhts3t64 arm64 1.21+ds-1 [426 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 libimagequant0 arm64 2.18.0-1+b2 [34.6 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3.1 [173 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 libncurses6 arm64 6.5+20250216-1 [96.1 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 libopenjp2-7 arm64 2.5.3-1 [189 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 libpython3.12-stdlib arm64 3.12.9-1 [1909 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 libraqm0 arm64 0.10.2-1 [13.6 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 132 http://deb.debian.org/debian unstable/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [113 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB] Get: 134 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 24.2-1 [55.3 kB] Get: 135 http://deb.debian.org/debian unstable/main arm64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 136 http://deb.debian.org/debian unstable/main arm64 python3-toml all 0.10.2-1 [16.2 kB] Get: 137 http://deb.debian.org/debian unstable/main arm64 python3-wheel all 0.45.1-1 [56.7 kB] Get: 138 http://deb.debian.org/debian unstable/main arm64 python3-build all 1.2.2-1 [36.0 kB] Get: 139 http://deb.debian.org/debian unstable/main arm64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 pybuild-plugin-pyproject all 6.20250108 [11.6 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 python3.12 arm64 3.12.9-1 [681 kB] Get: 142 http://deb.debian.org/debian unstable/main arm64 python3-all arm64 3.13.1-2 [1056 B] Get: 143 http://deb.debian.org/debian unstable/main arm64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 144 http://deb.debian.org/debian unstable/main arm64 python3-pil arm64 11.1.0-5 [514 kB] Get: 145 http://deb.debian.org/debian unstable/main arm64 python3-cairo arm64 1.26.1-2+b1 [130 kB] Get: 146 http://deb.debian.org/debian unstable/main arm64 python3-freetype all 2.5.1-1 [89.3 kB] Get: 147 http://deb.debian.org/debian unstable/main arm64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 148 http://deb.debian.org/debian unstable/main arm64 python3-reportlab all 4.3.1-1 [1158 kB] Get: 149 http://deb.debian.org/debian unstable/main arm64 xml-core all 0.19 [20.1 kB] Get: 150 http://deb.debian.org/debian unstable/main arm64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 151 http://deb.debian.org/debian unstable/main arm64 python3-biopython arm64 1.85+dfsg-2 [1662 kB] Get: 152 http://deb.debian.org/debian unstable/main arm64 python3-coverage arm64 7.6.0+dfsg1-2+b1 [177 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 154 http://deb.debian.org/debian unstable/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 155 http://deb.debian.org/debian unstable/main arm64 python3-pytest all 8.3.4-1 [250 kB] Get: 156 http://deb.debian.org/debian unstable/main arm64 python3-setuptools-scm all 8.1.0-1 [40.5 kB] Get: 157 http://deb.debian.org/debian unstable/main arm64 samtools arm64 1.21-1 [637 kB] Get: 158 http://deb.debian.org/debian unstable/main arm64 tabix arm64 1.21+ds-1 [461 kB] Fetched 70.5 MB in 0s (213 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19889 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.2-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.2-1_arm64.deb ... Unpacking python3.13-minimal (3.13.2-1) ... Setting up libpython3.13-minimal:arm64 (3.13.2-1) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.13-minimal (3.13.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20223 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.1-2_arm64.deb ... Unpacking python3-minimal (3.13.1-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_12.0.0_all.deb ... Unpacking media-types (12.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025a-2_all.deb ... Unpacking tzdata (2025a-2) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.4.7-1_arm64.deb ... Unpacking libffi8:arm64 (3.4.7-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.2-6_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_arm64.deb ... Unpacking python3.13 (3.13.2-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.13.1-2_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.13.1-2) ... Setting up python3-minimal (3.13.1-2) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21233 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.1-2_arm64.deb ... Unpacking python3 (3.13.1-2) ... Selecting previously unselected package python3-numpy-dev:arm64. Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.3+ds-2_arm64.deb ... Unpacking python3-numpy-dev:arm64 (1:2.2.3+ds-2) ... Selecting previously unselected package libblas3:arm64. Preparing to unpack .../002-libblas3_3.12.1-2_arm64.deb ... Unpacking libblas3:arm64 (3.12.1-2) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../003-libgfortran5_14.2.0-17_arm64.deb ... Unpacking libgfortran5:arm64 (14.2.0-17) ... Selecting previously unselected package liblapack3:arm64. Preparing to unpack .../004-liblapack3_3.12.1-2_arm64.deb ... Unpacking liblapack3:arm64 (3.12.1-2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../005-python3-numpy_1%3a2.2.3+ds-2_arm64.deb ... Unpacking python3-numpy (1:2.2.3+ds-2) ... Selecting previously unselected package libpython3.12-minimal:arm64. Preparing to unpack .../006-libpython3.12-minimal_3.12.9-1_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.9-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../007-python3.12-minimal_3.12.9-1_arm64.deb ... Unpacking python3.12-minimal (3.12.9-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../008-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../009-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../010-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../011-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../012-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../111-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package libopenjp2-7:arm64. Preparing to unpack .../112-libopenjp2-7_2.5.3-1_arm64.deb ... Unpacking libopenjp2-7:arm64 (2.5.3-1) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../113-libpython3.12-stdlib_3.12.9-1_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.9-1) ... Selecting previously unselected package libraqm0:arm64. Preparing to unpack .../114-libraqm0_0.10.2-1_arm64.deb ... Unpacking libraqm0:arm64 (0.10.2-1) ... 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Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.85+dfsg-2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2598287/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/2598287/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/python-pyfaidx-0.8.1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-pyfaidx_0.8.1.3-1_source.changes dpkg-buildpackage: info: source package python-pyfaidx dpkg-buildpackage: info: source version 0.8.1.3-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean LC_ALL=C.UTF-8 dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-pyfaidx-0.8.1.3' dh_auto_clean rm -f .coverage rm -f tests/data/genes.fasta.gz rm -rf pyfaidx.egg-info make[1]: Leaving directory '/build/reproducible-path/python-pyfaidx-0.8.1.3' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary LC_ALL=C.UTF-8 dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.12_pyfaidx * Building wheel... running bdist_wheel running build running build_py creating build/lib/pyfaidx copying pyfaidx/cli.py -> build/lib/pyfaidx copying pyfaidx/__init__.py -> build/lib/pyfaidx running egg_info creating pyfaidx.egg-info writing pyfaidx.egg-info/PKG-INFO writing dependency_links to pyfaidx.egg-info/dependency_links.txt writing entry points to pyfaidx.egg-info/entry_points.txt writing requirements to pyfaidx.egg-info/requires.txt writing top-level names to pyfaidx.egg-info/top_level.txt writing manifest file 'pyfaidx.egg-info/SOURCES.txt' reading manifest file 'pyfaidx.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'docs/build/html/*' adding license file 'LICENSE' writing manifest file 'pyfaidx.egg-info/SOURCES.txt' installing to build/bdist.linux-aarch64/wheel running install running install_lib creating build/bdist.linux-aarch64/wheel creating build/bdist.linux-aarch64/wheel/pyfaidx copying build/lib/pyfaidx/__init__.py -> build/bdist.linux-aarch64/wheel/./pyfaidx copying build/lib/pyfaidx/cli.py -> build/bdist.linux-aarch64/wheel/./pyfaidx running install_egg_info Copying pyfaidx.egg-info to build/bdist.linux-aarch64/wheel/./pyfaidx-0.8.1.3.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/pyfaidx-0.8.1.3.dist-info/WHEEL creating '/build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.12_pyfaidx/.tmp-4vravk55/pyfaidx-0.8.1.3-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'pyfaidx/__init__.py' adding 'pyfaidx/cli.py' adding 'pyfaidx-0.8.1.3.dist-info/LICENSE' adding 'pyfaidx-0.8.1.3.dist-info/METADATA' adding 'pyfaidx-0.8.1.3.dist-info/WHEEL' adding 'pyfaidx-0.8.1.3.dist-info/entry_points.txt' adding 'pyfaidx-0.8.1.3.dist-info/top_level.txt' adding 'pyfaidx-0.8.1.3.dist-info/RECORD' removing build/bdist.linux-aarch64/wheel Successfully built pyfaidx-0.8.1.3-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.13_pyfaidx * Building wheel... running bdist_wheel running build running build_py running egg_info writing pyfaidx.egg-info/PKG-INFO writing dependency_links to pyfaidx.egg-info/dependency_links.txt writing entry points to pyfaidx.egg-info/entry_points.txt writing requirements to pyfaidx.egg-info/requires.txt writing top-level names to pyfaidx.egg-info/top_level.txt reading manifest file 'pyfaidx.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'docs/build/html/*' adding license file 'LICENSE' writing manifest file 'pyfaidx.egg-info/SOURCES.txt' installing to build/bdist.linux-aarch64/wheel running install running install_lib creating build/bdist.linux-aarch64/wheel creating build/bdist.linux-aarch64/wheel/pyfaidx copying build/lib/pyfaidx/__init__.py -> build/bdist.linux-aarch64/wheel/./pyfaidx copying build/lib/pyfaidx/cli.py -> build/bdist.linux-aarch64/wheel/./pyfaidx running install_egg_info Copying pyfaidx.egg-info to build/bdist.linux-aarch64/wheel/./pyfaidx-0.8.1.3.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/pyfaidx-0.8.1.3.dist-info/WHEEL creating '/build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.13_pyfaidx/.tmp-bokc2v8v/pyfaidx-0.8.1.3-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'pyfaidx/__init__.py' adding 'pyfaidx/cli.py' adding 'pyfaidx-0.8.1.3.dist-info/LICENSE' adding 'pyfaidx-0.8.1.3.dist-info/METADATA' adding 'pyfaidx-0.8.1.3.dist-info/WHEEL' adding 'pyfaidx-0.8.1.3.dist-info/entry_points.txt' adding 'pyfaidx-0.8.1.3.dist-info/top_level.txt' adding 'pyfaidx-0.8.1.3.dist-info/RECORD' removing build/bdist.linux-aarch64/wheel Successfully built pyfaidx-0.8.1.3-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/python-pyfaidx-0.8.1.3' bgzip -c tests/data/genes.fasta > tests/data/genes.fasta.gz dh_auto_test I: pybuild base:311: cd /build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.12_pyfaidx/build; python3.12 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.12.9, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.12_pyfaidx/build configfile: pyproject.toml plugins: typeguard-4.4.1 collected 136 items tests/test_FastaRecord.py ..... [ 3%] tests/test_FastaRecord_iter.py ... [ 5%] tests/test_FastaVariant.py ssssss [ 10%] tests/test_Fasta_bgzip.py x.....x..................... [ 30%] tests/test_Fasta_integer_index.py .. [ 32%] tests/test_Fasta_synchronization.py ... [ 34%] tests/test_Path.py .. [ 36%] tests/test_bio_seqio.py ... [ 38%] tests/test_faidx.py ......... [ 44%] tests/test_feature_bounds_check.py ........................ [ 62%] tests/test_feature_default_seq.py . [ 63%] tests/test_feature_indexing.py ............... [ 74%] tests/test_feature_key_function.py ...... [ 78%] tests/test_feature_read_ahead_buffer.py ..... [ 82%] tests/test_feature_sequence_as_raw.py ..... [ 86%] tests/test_feature_spliced_seq.py .. [ 87%] tests/test_feature_split_char.py .... [ 90%] tests/test_fsspec.py ssss [ 93%] tests/test_sequence_class.py ......... [100%] ================= 124 passed, 10 skipped, 2 xfailed in 11.16s ================== I: pybuild base:311: cd /build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.13_pyfaidx/build; python3.13 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.13_pyfaidx/build configfile: pyproject.toml plugins: typeguard-4.4.1 collected 136 items tests/test_FastaRecord.py ..... [ 3%] tests/test_FastaRecord_iter.py ... [ 5%] tests/test_FastaVariant.py ssssss [ 10%] tests/test_Fasta_bgzip.py x.....x..................... [ 30%] tests/test_Fasta_integer_index.py .. [ 32%] tests/test_Fasta_synchronization.py ... [ 34%] tests/test_Path.py .. [ 36%] tests/test_bio_seqio.py ... [ 38%] tests/test_faidx.py ......... [ 44%] tests/test_feature_bounds_check.py ........................ [ 62%] tests/test_feature_default_seq.py . [ 63%] tests/test_feature_indexing.py ............... [ 74%] tests/test_feature_key_function.py ...... [ 78%] tests/test_feature_read_ahead_buffer.py ..... [ 82%] tests/test_feature_sequence_as_raw.py ..... [ 86%] tests/test_feature_spliced_seq.py .. [ 87%] tests/test_feature_split_char.py .... [ 90%] tests/test_fsspec.py ssss [ 93%] tests/test_sequence_class.py ......... [100%] ================== 124 passed, 10 skipped, 2 xfailed in 8.84s ================== rm tests/data/genes.fasta.gz make[1]: Leaving directory '/build/reproducible-path/python-pyfaidx-0.8.1.3' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/python-pyfaidx-0.8.1.3' dh_compress --exclude=gz.tbi make[1]: Leaving directory '/build/reproducible-path/python-pyfaidx-0.8.1.3' dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pyfaidx' in '../python3-pyfaidx_0.8.1.3-1_all.deb'. dpkg-deb: building package 'python-pyfaidx-examples' in '../python-pyfaidx-examples_0.8.1.3-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-pyfaidx_0.8.1.3-1_arm64.buildinfo dpkg-genchanges --build=binary -O../python-pyfaidx_0.8.1.3-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2598287/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2598287/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2598287 and its subdirectories I: Current time: Sun Feb 23 03:52:07 +14 2025 I: pbuilder-time-stamp: 1740232327 + false + set +x Sat Feb 22 13:52:07 UTC 2025 I: Signing ./b2/python-pyfaidx_0.8.1.3-1_arm64.buildinfo as python-pyfaidx_0.8.1.3-1_arm64.buildinfo.asc Sat Feb 22 13:52:07 UTC 2025 I: Signed ./b2/python-pyfaidx_0.8.1.3-1_arm64.buildinfo as ./b2/python-pyfaidx_0.8.1.3-1_arm64.buildinfo.asc Sat Feb 22 13:52:07 UTC 2025 - build #2 for python-pyfaidx/unstable/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Sat Feb 22 13:52:07 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-X3WqX8mK, removing. /srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7: total 96 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 13:49 b1 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 13:52 b2 -rw-r--r-- 1 jenkins jenkins 2544 Oct 16 19:33 python-pyfaidx_0.8.1.3-1.dsc -rw------- 1 jenkins jenkins 78814 Feb 22 13:49 rbuildlog.CivvlwY /srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7/b1: total 292 -rw-r--r-- 1 jenkins jenkins 74801 Feb 22 13:49 build.log -rw-r--r-- 1 jenkins jenkins 34184 Feb 22 13:49 python-pyfaidx-examples_0.8.1.3-1_all.deb -rw-r--r-- 1 jenkins jenkins 7096 Feb 22 13:49 python-pyfaidx_0.8.1.3-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2544 Feb 22 13:49 python-pyfaidx_0.8.1.3-1.dsc -rw-r--r-- 1 jenkins jenkins 8917 Feb 22 13:49 python-pyfaidx_0.8.1.3-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 9799 Feb 22 13:49 python-pyfaidx_0.8.1.3-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1620 Feb 22 13:49 python-pyfaidx_0.8.1.3-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 1642 Feb 22 13:49 python-pyfaidx_0.8.1.3-1_source.changes -rw-r--r-- 1 jenkins jenkins 96521 Feb 22 13:49 python-pyfaidx_0.8.1.3.orig.tar.gz -rw-r--r-- 1 jenkins jenkins 29064 Feb 22 13:49 python3-pyfaidx_0.8.1.3-1_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7/b2: total 284 -rw-r--r-- 1 jenkins jenkins 76745 Feb 22 13:52 build.log -rw-r--r-- 1 jenkins jenkins 34184 Feb 22 13:52 python-pyfaidx-examples_0.8.1.3-1_all.deb -rw-r--r-- 1 jenkins jenkins 7096 Feb 22 13:52 python-pyfaidx_0.8.1.3-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2544 Feb 22 13:52 python-pyfaidx_0.8.1.3-1.dsc -rw-r--r-- 1 jenkins jenkins 8917 Feb 22 13:52 python-pyfaidx_0.8.1.3-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 9799 Feb 22 13:52 python-pyfaidx_0.8.1.3-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1620 Feb 22 13:52 python-pyfaidx_0.8.1.3-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 1642 Feb 22 13:52 python-pyfaidx_0.8.1.3-1_source.changes -rw-r--r-- 1 jenkins jenkins 96521 Feb 22 13:52 python-pyfaidx_0.8.1.3.orig.tar.gz -rw-r--r-- 1 jenkins jenkins 29064 Feb 22 13:52 python3-pyfaidx_0.8.1.3-1_all.deb Sat Feb 22 13:52:08 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Sat Feb 22 13:52:08 UTC 2025 I: python-pyfaidx_0.8.1.3-1_arm64.changes: Format: 1.8 Date: Wed, 16 Oct 2024 20:37:25 +0200 Source: python-pyfaidx Binary: python-pyfaidx-examples python3-pyfaidx Architecture: all Version: 0.8.1.3-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: python-pyfaidx-examples - example data for efficient random access to fasta subsequences fo python3-pyfaidx - efficient random access to fasta subsequences for Python 3 Changes: python-pyfaidx (0.8.1.3-1) unstable; urgency=medium . * New upstream version 0.8.1.3 * rm-setuptools.patch: delete: applied upstream. * manual-layout.patch: refresh. Checksums-Sha1: 0899993097cd71f4a683c6b745ae92ef91b8b793 34184 python-pyfaidx-examples_0.8.1.3-1_all.deb fed035cadae3e13b28a2a7d9dd990367c00de431 8917 python-pyfaidx_0.8.1.3-1_arm64.buildinfo d76878853b659269289d8bf9b6816a16bcfa6d4e 29064 python3-pyfaidx_0.8.1.3-1_all.deb Checksums-Sha256: 1f1a4fb6a413d70c00f6b91b6564c95e192cf0f42ba20194ae9cf5874b32e895 34184 python-pyfaidx-examples_0.8.1.3-1_all.deb c8557316c31cf8d0734b0801b23567aa5a4068569f6bc79e9abb76f9f2ad2bb9 8917 python-pyfaidx_0.8.1.3-1_arm64.buildinfo 32a1819d2e9111422c3d63b8cf46dc8fa3c5781c571bdafe9d571ffb54690ee9 29064 python3-pyfaidx_0.8.1.3-1_all.deb Files: ad49737633df5e9c290fe5a8a9116cf0 34184 python optional python-pyfaidx-examples_0.8.1.3-1_all.deb bd79a4c41c26a4d7979cc586fd237116 8917 python optional python-pyfaidx_0.8.1.3-1_arm64.buildinfo ce332d6b35f315a73452eda877f3212d 29064 python optional python3-pyfaidx_0.8.1.3-1_all.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/python-pyfaidx_0.8.1.3-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/python-pyfaidx_0.8.1.3-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/python-pyfaidx_0.8.1.3-1.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/python-pyfaidx_0.8.1.3-1.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/arm64/python-pyfaidx_0.8.1.3-1_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/python-pyfaidx_0.8.1.3-1.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-02-22 13:49:42.191919139 +0000 +++ b2/build.log 2025-02-22 13:52:08.169288841 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Mar 27 08:10:23 -12 2026 -I: pbuilder-time-stamp: 1774642223 +I: Current time: Sun Feb 23 03:49:45 +14 2025 +I: pbuilder-time-stamp: 1740232185 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: applying manual-layout.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3517019/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2598287/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 22 13:49 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2598287/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2598287/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='189ce719c8bc4530adcc4171ce2e345d' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3517019' - PS1='# ' - PS2='> ' + INVOCATION_ID=8573494953294b67ac22e1d4fbbf2a1c + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2598287 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7/pbuilderrc_bnSo --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7/b1 --logfile b1/build.log python-pyfaidx_0.8.1.3-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7/pbuilderrc_qAX8 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7/b2 --logfile b2/build.log python-pyfaidx_0.8.1.3-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3517019/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2598287/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -289,7 +321,7 @@ Get: 156 http://deb.debian.org/debian unstable/main arm64 python3-setuptools-scm all 8.1.0-1 [40.5 kB] Get: 157 http://deb.debian.org/debian unstable/main arm64 samtools arm64 1.21-1 [637 kB] Get: 158 http://deb.debian.org/debian unstable/main arm64 tabix arm64 1.21+ds-1 [461 kB] -Fetched 70.5 MB in 1s (84.1 MB/s) +Fetched 70.5 MB in 0s (213 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19889 files and directories currently installed.) @@ -817,8 +849,8 @@ Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Mar 27 20:10:49 UTC 2026. -Universal Time is now: Fri Mar 27 20:10:49 UTC 2026. +Local time is now: Sat Feb 22 13:50:11 UTC 2025. +Universal Time is now: Sat Feb 22 13:50:11 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:arm64 (1:1.1.8-1+b2) ... @@ -956,7 +988,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-pyfaidx-0.8.1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pyfaidx_0.8.1.3-1_source.changes +I: user script /srv/workspace/pbuilder/2598287/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2598287/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-pyfaidx-0.8.1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-pyfaidx_0.8.1.3-1_source.changes dpkg-buildpackage: info: source package python-pyfaidx dpkg-buildpackage: info: source version 0.8.1.3-1 dpkg-buildpackage: info: source distribution unstable @@ -1013,7 +1049,7 @@ Copying pyfaidx.egg-info to build/bdist.linux-aarch64/wheel/./pyfaidx-0.8.1.3.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/pyfaidx-0.8.1.3.dist-info/WHEEL -creating '/build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.12_pyfaidx/.tmp-hza304mh/pyfaidx-0.8.1.3-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it +creating '/build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.12_pyfaidx/.tmp-4vravk55/pyfaidx-0.8.1.3-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'pyfaidx/__init__.py' adding 'pyfaidx/cli.py' adding 'pyfaidx-0.8.1.3.dist-info/LICENSE' @@ -1053,7 +1089,7 @@ Copying pyfaidx.egg-info to build/bdist.linux-aarch64/wheel/./pyfaidx-0.8.1.3.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/pyfaidx-0.8.1.3.dist-info/WHEEL -creating '/build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.13_pyfaidx/.tmp-u4stukfi/pyfaidx-0.8.1.3-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it +creating '/build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.13_pyfaidx/.tmp-bokc2v8v/pyfaidx-0.8.1.3-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'pyfaidx/__init__.py' adding 'pyfaidx/cli.py' adding 'pyfaidx-0.8.1.3.dist-info/LICENSE' @@ -1097,7 +1133,7 @@ tests/test_fsspec.py ssss [ 93%] tests/test_sequence_class.py ......... [100%] -================== 124 passed, 10 skipped, 2 xfailed in 9.79s ================== +================= 124 passed, 10 skipped, 2 xfailed in 11.16s ================== I: pybuild base:311: cd /build/reproducible-path/python-pyfaidx-0.8.1.3/.pybuild/cpython3_3.13_pyfaidx/build; python3.13 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 @@ -1126,7 +1162,7 @@ tests/test_fsspec.py ssss [ 93%] tests/test_sequence_class.py ......... [100%] -================== 124 passed, 10 skipped, 2 xfailed in 8.59s ================== +================== 124 passed, 10 skipped, 2 xfailed in 8.84s ================== rm tests/data/genes.fasta.gz make[1]: Leaving directory '/build/reproducible-path/python-pyfaidx-0.8.1.3' create-stamp debian/debhelper-build-stamp @@ -1164,12 +1200,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2598287/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2598287/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3517019 and its subdirectories -I: Current time: Fri Mar 27 08:12:41 -12 2026 -I: pbuilder-time-stamp: 1774642361 +I: removing directory /srv/workspace/pbuilder/2598287 and its subdirectories +I: Current time: Sun Feb 23 03:52:07 +14 2025 +I: pbuilder-time-stamp: 1740232327 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/python-pyfaidx_0.8.1.3-1.diff: 69.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/python-pyfaidx_0.8.1.3-1.diff.gz b2/build.log: 82.2% -- replaced with stdout Compressing the 1st log... b1/build.log: 82.7% -- replaced with stdout Sat Feb 22 13:52:10 UTC 2025 I: diffoscope 288 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_python-pyfaidx_unstable_arm64_1740232330 + touch /var/log/reproducible-builds/diffoscope_stamp_python-pyfaidx_unstable_arm64_1740232330 + RESULT=0 + systemd-run '--description=diffoscope on python-pyfaidx/0.8.1.3-1 in unstable/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_4-58360 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7 --run-session -c jenkins-reproducible-unstable-diffoscope-2f6bc686-4c1c-46f4-a3ed-980675597f1f -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7/dbd-tmp-1syib5p ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7/python-pyfaidx_0.8.1.3-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7/python-pyfaidx_0.8.1.3-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7/python-pyfaidx_0.8.1.3-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7/b1/python-pyfaidx_0.8.1.3-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7/b2/python-pyfaidx_0.8.1.3-1_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_4-58360.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7/python-pyfaidx_0.8.1.3-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7/python-pyfaidx_0.8.1.3-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7/python-pyfaidx_0.8.1.3-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7/b1/python-pyfaidx_0.8.1.3-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Hd61Emt7/b2/python-pyfaidx_0.8.1.3-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.004s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 237ms CPU time consumed: 234ms _ _ __ _ _ _ __ _ _| |_| |__ ___ _ __ _ __ _ _ / _| __ _(_) __| |_ __ | '_ \| | | | __| '_ \ / _ \| '_ \ _____| '_ \| | | | |_ / _` | |/ _` \ \/ / | |_) | |_| | |_| | | | (_) | | | |_____| |_) | |_| | _| (_| | | (_| |> < | .__/ \__, |\__|_| |_|\___/|_| |_| | .__/ \__, |_| \__,_|_|\__,_/_/\_\ |_| |___/ |_| |___/ Sat Feb 22 13:52:10 UTC 2025 I: diffoscope 288 found no differences in the changes files, and a .buildinfo file also exists. Sat Feb 22 13:52:10 UTC 2025 I: python-pyfaidx from unstable built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-02-22 13:52:11] INFO: Starting at 2025-02-22 13:52:11.159431 [2025-02-22 13:52:11] INFO: Generating the pages of 1 package(s) [2025-02-22 13:52:11] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/arm64/python-pyfaidx didn't produce a buildlog, even though it has been built. [2025-02-22 13:52:11] INFO: Finished at 2025-02-22 13:52:11.711591, took: 0:00:00.552168 Sat Feb 22 13:52:11 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/arm64/python-pyfaidx.html Sat Feb 22 13:52:11 UTC 2025 I: Submitting .buildinfo files to external archives: Sat Feb 22 13:52:11 UTC 2025 I: Submitting 12K b1/python-pyfaidx_0.8.1.3-1_arm64.buildinfo.asc https://buildinfo.debian.net/fed035cadae3e13b28a2a7d9dd990367c00de431/python-pyfaidx_0.8.1.3-1_all Sat Feb 22 13:52:13 UTC 2025 I: Submitting 12K b2/python-pyfaidx_0.8.1.3-1_arm64.buildinfo.asc https://buildinfo.debian.net/0ef115702929b5f02eb2b64c66818bb79becf90d/python-pyfaidx_0.8.1.3-1_all Sat Feb 22 13:52:15 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Feb 22 13:52:15 UTC 2025 I: Done submitting .buildinfo files. Sat Feb 22 13:52:15 UTC 2025 I: Removing signed python-pyfaidx_0.8.1.3-1_arm64.buildinfo.asc files: removed './b1/python-pyfaidx_0.8.1.3-1_arm64.buildinfo.asc' removed './b2/python-pyfaidx_0.8.1.3-1_arm64.buildinfo.asc' 1740232335 arm64 unstable python-pyfaidx Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/python-pyfaidx_0.8.1.3-1.rbuild.log: 80.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/python-pyfaidx_0.8.1.3-1.rbuild.log.gz [2025-02-22 13:52:15] INFO: Starting at 2025-02-22 13:52:15.625502 [2025-02-22 13:52:15] INFO: Generating the pages of 1 package(s) [2025-02-22 13:52:16] INFO: Finished at 2025-02-22 13:52:16.073307, took: 0:00:00.447813 All cleanup done. Sat Feb 22 13:52:16 UTC 2025 - total duration: 0h 5m 7s. Sat Feb 22 13:52:16 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-Dzu9mo05, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 5min 12.777s CPU time consumed: 7.186s