Running as unit: rb-build-arm64_5-121176.service; invocation ID: a828b30ac7c84ad3b4b6653946176fc8 ==================================================================================== Sun Sep 14 21:09:24 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_5) on jenkins, called using "codethink03-arm64 codethink04-arm64" as arguments. Sun Sep 14 21:09:24 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-ZZblNRM1" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Sep 14 21:09:24 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Sun Sep 14 21:09:24 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-9zLUBh' Sun Sep 14 21:09:24 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Sun Sep 14 21:09:24 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-mSTfxK' ok, let's check if mcaller is building anywhere yet… ok, mcaller is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of mcaller in unstable on arm64 on jenkins now. 1st build will be done on codethink03-arm64.debian.net. 2nd build will be done on codethink04-arm64.debian.net. ============================================================================= Sun Sep 14 21:09:28 UTC 2025 I: starting to build mcaller/unstable/arm64 on jenkins on '2025-09-14 21:09' Sun Sep 14 21:09:28 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_5/121176/console.log 1757884168 arm64 unstable mcaller Sun Sep 14 21:09:28 UTC 2025 I: Downloading source for unstable/mcaller=1.0.3+git20210624.b415090-3 --2025-09-14 21:09:28-- http://deb.debian.org/debian/pool/main/m/mcaller/mcaller_1.0.3%2bgit20210624.b415090-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2372 (2.3K) [text/prs.lines.tag] Saving to: ‘mcaller_1.0.3+git20210624.b415090-3.dsc’ 0K .. 100% 265M=0s 2025-09-14 21:09:28 (265 MB/s) - ‘mcaller_1.0.3+git20210624.b415090-3.dsc’ saved [2372/2372] --2025-09-14 21:09:28-- http://deb.debian.org/debian/pool/main/m/mcaller/mcaller_1.0.3%2bgit20210624.b415090-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2372 (2.3K) [text/prs.lines.tag] Saving to: ‘mcaller_1.0.3+git20210624.b415090-3.dsc’ 0K .. 100% 265M=0s 2025-09-14 21:09:28 (265 MB/s) - ‘mcaller_1.0.3+git20210624.b415090-3.dsc’ saved [2372/2372] Sun Sep 14 21:09:28 UTC 2025 I: mcaller_1.0.3+git20210624.b415090-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: mcaller Binary: mcaller Architecture: all Version: 1.0.3+git20210624.b415090-3 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/al-mcintyre/mCaller Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/mcaller Vcs-Git: https://salsa.debian.org/med-team/mcaller.git Testsuite: autopkgtest, autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-seaborn, python3-biopython, python3-numpy, python3-sklearn Package-List: mcaller deb science optional arch=all Checksums-Sha1: 3581db7c90993a4c321d37aad5ddd80b2dc24a40 6612544 mcaller_1.0.3+git20210624.b415090.orig.tar.xz 54f95a50804acace1e1868a52b555644f13d64b7 7488 mcaller_1.0.3+git20210624.b415090-3.debian.tar.xz Checksums-Sha256: bde75bad7b0cf688084a5ad8a3dd792e4c52419d94c6118f6a4a752a15d4521f 6612544 mcaller_1.0.3+git20210624.b415090.orig.tar.xz 4207438d211679ddbf852aef098fe6a9c98a5331d38f5c9f88c8009bf51667ec 7488 mcaller_1.0.3+git20210624.b415090-3.debian.tar.xz Files: 6d969880db638213a6e7389af1322483 6612544 mcaller_1.0.3+git20210624.b415090.orig.tar.xz c21227868dc517732860621d1140e1ae 7488 mcaller_1.0.3+git20210624.b415090-3.debian.tar.xz Dgit: 09a50931020529c246a06d938d43d3d692f34d17 debian archive/debian/1.0.3+git20210624.b415090-3 https://git.dgit.debian.org/mcaller -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmJpwywUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdp3hRAApkoygpWS3goFgMLJ4Psv8Ssrktsp kBdbJeN5pf9tDbYisX9uN9e4dQbKDEYgUXYmPhI45joXH6vFYlh90mLhJWCmf7WA Qub7f/1U/QV56DTlkAG7zHutP5Dinbf5BxIAIFZGVupqmrSIf2+xMa+THObobJF1 MduWETE4NFr62dGOVQgCcD9CipBC9IUUJAmrhQI4gEgUc2goigvU/0tcgbluAdAm J29lOOYRyY9Sw2IJFTS3JGIN+9KLE24ipK9RGSaT1wAKUW44LpVtjoibjDGZaZ9L mFfP/Z15HS9oxY/5dIfwmnxLuK2d5km6HIcCPKhw9aozs4M0unjjX6FbP2MmyU9P xi1yCNWyegGcLuIpkVSqxyj5efylY9vBpxO5w6gqc4RCiV4z40bqTrSAu7IBAwct 6jnFimdBZ77mlzZqVt3m/MXnHxhTOi7Oo6ZU/DvRpzQdzKX9eI1utLl+poaxCB9Y 0CnZqcvMheHi8J5lmhXy/bEUbyLmKQo4TTOX1TEFMzJGZzKPGI6uznEvevmBkYBP PCJPd0OqNu/KAn18S2vIrf58c9D4m/NnOB7wlBPpGHKHW9vEnqYVJWQ9e1S+rAGK GWqqhF7/Olap92GH9lNEW6u33LkExx0BOdatubL1d3uH3GINNJe8H380GVrvKkIj nusytI3ZJfO/avU= =ulkI -----END PGP SIGNATURE----- Sun Sep 14 21:09:28 UTC 2025 I: Checking whether the package is not for us Sun Sep 14 21:09:28 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Sun Sep 14 21:09:28 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Sun Sep 14 21:09:28 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Sun Sep 14 21:09:28 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-AwsO9Q' ==================================================================================== Sun Oct 18 03:32:29 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "1 mcaller unstable /srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w 1.0.3+git20210624.b415090-3" as arguments. Sun Oct 18 03:32:29 UTC 2026 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-XtASr7Fr" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Oct 18 03:32:29 UTC 2026 I: Downloading source for unstable/mcaller=1.0.3+git20210624.b415090-3 Reading package lists... NOTICE: 'mcaller' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/mcaller.git Please use: git clone https://salsa.debian.org/med-team/mcaller.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 6622 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main mcaller 1.0.3+git20210624.b415090-3 (dsc) [2372 B] Get:2 http://deb.debian.org/debian unstable/main mcaller 1.0.3+git20210624.b415090-3 (tar) [6613 kB] Get:3 http://deb.debian.org/debian unstable/main mcaller 1.0.3+git20210624.b415090-3 (diff) [7488 B] Fetched 6622 kB in 7s (888 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'mcaller' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/mcaller.git Please use: git clone https://salsa.debian.org/med-team/mcaller.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 6622 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main mcaller 1.0.3+git20210624.b415090-3 (dsc) [2372 B] Get:2 http://deb.debian.org/debian unstable/main mcaller 1.0.3+git20210624.b415090-3 (tar) [6613 kB] Get:3 http://deb.debian.org/debian unstable/main mcaller 1.0.3+git20210624.b415090-3 (diff) [7488 B] Fetched 6622 kB in 7s (888 kB/s) Download complete and in download only mode ============================================================================= Building mcaller in unstable on arm64 on codethink03-arm64 now. Date: Sun Oct 18 04:32:36 BST 2026 Date UTC: Sun Oct 18 03:32:36 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sat Oct 17 15:32:37 -12 2026 I: pbuilder-time-stamp: 1792294357 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mcaller_1.0.3+git20210624.b415090-3.dsc] I: copying [./mcaller_1.0.3+git20210624.b415090.orig.tar.xz] I: copying [./mcaller_1.0.3+git20210624.b415090-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./mcaller_1.0.3+git20210624.b415090-3.dsc: no acceptable signature found dpkg-source: info: extracting mcaller in mcaller-1.0.3+git20210624.b415090 dpkg-source: info: unpacking mcaller_1.0.3+git20210624.b415090.orig.tar.xz dpkg-source: info: unpacking mcaller_1.0.3+git20210624.b415090-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying shebang.patch dpkg-source: info: applying python2to3.patch dpkg-source: info: applying prefixes.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3481111/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='c190a00a722e41fdba431604b4b4b1e6' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3481111' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w/pbuilderrc_wiSw --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w/b1 --logfile b1/build.log mcaller_1.0.3+git20210624.b415090-3.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3481111/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-seaborn, python3-biopython, python3-numpy, python3-sklearn dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-seaborn; however: Package python3-seaborn is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-sklearn; however: Package python3-sklearn is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libabsl20240722{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libblas3{a} libbrotli1{a} libcairo2{a} libdav1d7{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgpg-error0{a} libgraphite2-3{a} libharfbuzz0b{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} liblapack3{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} librav1e0.7{a} libreadline8t64{a} libsharpyuv0{a} libsvtav1enc2{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2-16{a} libxrender1{a} libxslt1.1{a} libxss1{a} libyuv0{a} libzopfli1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-attr{a} python3-autocommand{a} python3-biopython{a} python3-brotli{a} python3-cairo{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-fonttools{a} python3-freetype{a} python3-fs{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-joblib{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pyparsing{a} python3-pytz{a} python3-reportlab{a} python3-rlpycairo{a} python3-scipy{a} python3-seaborn{a} python3-setuptools{a} python3-sklearn{a} python3-sklearn-lib{a} python3-sympy{a} python3-threadpoolctl{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-ufolib2{a} python3-zipp{a} python3-zopfli{a} python3.13{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} sgml-base{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra isympy-common libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libltdl-dev libmail-sendmail-perl linux-sysctl-defaults lynx ncbi-blast+ psmisc python-biopython-doc python3-bottleneck python3-bs4 python3-cssselect python3-html5lib python3-jinja2 python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pooch python3-psutil python3-pytest python3-tables python3-tz python3-yaml shared-mime-info wget xdg-user-dirs 0 packages upgraded, 166 newly installed, 0 to remove and 0 not upgraded. Need to get 132 MB of archives. After unpacking 529 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.7.1-2 [93.3 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.7-1 [857 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.7-1 [2001 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.7-1 [1895 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.7-1 [761 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 python3-numpy-dev arm64 1:2.2.4+ds-1.2 [138 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.1-7 [135 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 15.2.0-4 [371 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.1-7 [1846 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 python3-numpy arm64 1:2.2.4+ds-1.2 [3620 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-9 [62.8 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-9 [871 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41.1-3 [98.1 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1 [982 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.50-1 [275 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libfontenc1 arm64 1:1.1.8-1+b2 [22.5 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+25 [217 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 xfonts-utils arm64 1:7.7+7 [89.3 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 48 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-2.4 [318 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-2.4 [387 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.12-1 [343 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.12-1 [795 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.12-1 [27.0 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libxft2 arm64 2.3.6-1+b4 [51.6 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libxss1 arm64 1:1.2.3-1+b3 [17.1 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libtk8.6 arm64 8.6.17-1 [740 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-8 [537 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 blt arm64 2.5.3+dfsg-8 [5984 B] Get: 62 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.26 [91.8 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-5 [540 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 68 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.16-2 [100 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.26 [939 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20250414 [116 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 fonts-lyx all 2.4.4-1 [190 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libabsl20240722 arm64 20240722.0-4 [452 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libaom3 arm64 3.12.1-1 [1670 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libdav1d7 arm64 1.5.1-1 [252 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 libgav1-1 arm64 0.19.0-3+b1 [491 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 librav1e0.7 arm64 0.7.1-9+b2 [662 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 libsvtav1enc2 arm64 2.3.0+dfsg-1 [1558 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-4 [173 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libyuv0 arm64 0.0.1916.20250814-1 [137 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libavif16 arm64 1.3.0-1 [127 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libcairo2 arm64 1.18.4-1+b1 [483 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libgpg-error0 arm64 1.55-2 [83.9 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libgcrypt20 arm64 1.11.2-2 [772 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.84.4-3 [1428 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-7 [70.5 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 11.4.5-1 [465 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libimagequant0 arm64 4.4.0-3 [216 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libopenjp2-7 arm64 2.5.3-2.1 [189 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 libqhull-r8.0 arm64 2020.2-7 [229 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libraqm0 arm64 0.10.3-1 [13.6 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.7.0-5 [331 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [113 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libxslt1.1 arm64 1.1.43-0.2 [145 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libzopfli1 arm64 1.0.3-3 [95.2 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 python-matplotlib-data all 3.10.1+dfsg1-5 [2737 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 python3-all arm64 3.13.7-1 [1044 B] Get: 114 http://deb.debian.org/debian unstable/main arm64 python3-attr all 25.3.0-1 [69.5 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 python3-charset-normalizer arm64 3.4.3-1 [123 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 python3.13-tk arm64 3.13.7-1 [105 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 python3-tk arm64 3.13.5-1 [9604 B] Get: 119 http://deb.debian.org/debian unstable/main arm64 python3-pil.imagetk arm64 11.3.0-1 [81.3 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 python3-pil arm64 11.3.0-1 [507 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 python3-cairo arm64 1.27.0-2 [114 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 python3-freetype all 2.5.1-2 [89.4 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 124 http://deb.debian.org/debian unstable/main arm64 python3-reportlab all 4.4.3-1 [1168 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 xml-core all 0.19 [20.1 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 python3-biopython arm64 1.85+dfsg-5 [1660 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 python3-brotli arm64 1.1.0-2+b7 [300 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 python3-contourpy arm64 1.3.1-2 [191 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 python3-cycler all 0.12.1-2 [9616 B] Get: 132 http://deb.debian.org/debian unstable/main arm64 python3-dateutil all 2.9.0-4 [79.4 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 python3-decorator all 5.2.1-2 [33.0 kB] Get: 134 http://deb.debian.org/debian unstable/main arm64 python3-platformdirs all 4.4.0-1 [16.7 kB] Get: 135 http://deb.debian.org/debian unstable/main arm64 python3-fs all 2.4.16-8 [95.2 kB] Get: 136 http://deb.debian.org/debian unstable/main arm64 python3-lxml arm64 6.0.1-1 [1265 kB] Get: 137 http://deb.debian.org/debian unstable/main arm64 python3-lz4 arm64 4.4.4+dfsg-1 [25.5 kB] Get: 138 http://deb.debian.org/debian unstable/main arm64 python3-scipy arm64 1.15.3-1.1 [15.1 MB] Get: 139 http://deb.debian.org/debian unstable/main arm64 python3-mpmath all 1.3.0-1 [419 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 python3-sympy all 1.14.0-2 [4228 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.0 kB] Get: 142 http://deb.debian.org/debian unstable/main arm64 python3-zopfli arm64 0.2.3.post1-1 [10.2 kB] Get: 143 http://deb.debian.org/debian unstable/main arm64 unicode-data all 16.0.0-1 [9197 kB] Get: 144 http://deb.debian.org/debian unstable/main arm64 python3-fonttools arm64 4.57.0-2 [1368 kB] Get: 145 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 146 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 147 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 148 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 149 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 150 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 151 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 152 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 154 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 155 http://deb.debian.org/debian unstable/main arm64 python3-joblib all 1.4.2-5 [216 kB] Get: 156 http://deb.debian.org/debian unstable/main arm64 python3-kiwisolver arm64 1.4.7-3+b1 [57.8 kB] Get: 157 http://deb.debian.org/debian unstable/main arm64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 158 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 25.0-1 [56.6 kB] Get: 159 http://deb.debian.org/debian unstable/main arm64 python3-matplotlib arm64 3.10.1+dfsg1-5 [23.7 MB] Get: 160 http://deb.debian.org/debian unstable/main arm64 python3-pytz all 2025.2-3 [152 kB] Get: 161 http://deb.debian.org/debian unstable/main arm64 python3-pandas-lib arm64 2.2.3+dfsg-9 [3877 kB] Get: 162 http://deb.debian.org/debian unstable/main arm64 python3-pandas all 2.2.3+dfsg-9 [3097 kB] Get: 163 http://deb.debian.org/debian unstable/main arm64 python3-seaborn all 0.13.2-5 [215 kB] Get: 164 http://deb.debian.org/debian unstable/main arm64 python3-threadpoolctl all 3.1.0-1 [21.2 kB] Get: 165 http://deb.debian.org/debian unstable/main arm64 python3-sklearn-lib arm64 1.4.2+dfsg-8 [3408 kB] Get: 166 http://deb.debian.org/debian unstable/main arm64 python3-sklearn all 1.4.2+dfsg-8 [2248 kB] Fetched 132 MB in 1s (193 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.7-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.7-1_arm64.deb ... Unpacking python3.13-minimal (3.13.7-1) ... Setting up libpython3.13-minimal:arm64 (3.13.7-1) ... Setting up libexpat1:arm64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20354 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_arm64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.5.2-2_arm64.deb ... Unpacking libffi8:arm64 (3.5.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.3-3_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_arm64.deb ... Unpacking python3.13 (3.13.7-1) ... 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Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/mcaller-1.0.3+git20210624.b415090/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mcaller_1.0.3+git20210624.b415090-3_source.changes dpkg-buildpackage: info: source package mcaller dpkg-buildpackage: info: source version 1.0.3+git20210624.b415090-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/mcaller-1.0.3+git20210624.b415090' dh_auto_clean #rm -f model_NN_6_m6A.pkl testdata/masonread1.eventalign.diffs.6 testdata/masonread1.eventalign.diffs.6.train rm -rf __pycache__ rm -f model_NN_6_m6A.pkl make[1]: Leaving directory '/build/reproducible-path/mcaller-1.0.3+git20210624.b415090' dh_clean debian/rules binary dh binary --with python3 dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/mcaller-1.0.3+git20210624.b415090' cp -a testdata testdata_save ./mCaller.py -p testdata/test_positions_A.txt -r testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv -d r95_twobase_model_NN_6_m6A.pkl -f testdata/masonread1.fastq testdata/ 1 contigs 1 threads thread finished processing...: 35 observations 35 positions 0 regions with multiple methylated bases 0 observations with skips included 8 observations with too many skips Finished extracting signals ./mCaller.py -p testdata/test_positions_m6A.txt -r testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv -d r95_twobase_model_NN_6_m6A.pkl -f testdata/masonread1.fastq testdata/ 1 contigs 1 threads thread finished processing...: 9 observations 9 positions 0 regions with multiple methylated bases 0 observations with skips included 2 observations with too many skips Finished extracting signals ./mCaller.py -p testdata/test_positions.txt -r testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv -t 4 --train -f testdata/masonread1.fastq testdata/ 1 contigs 4 threads thread finished processing...: 44 observations 44 positions 1 regions with multiple methylated bases 0 observations with skips included 10 observations with too many skips thread finished processing...: 9 observations 9 positions 0 regions with multiple methylated bases 0 observations with skips included 4 observations with too many skips thread finished processing...: 28 observations 28 positions 0 regions with multiple methylated bases 0 observations with skips included 6 observations with too many skips Error: could not find sequence for reference contig li thread finished processing...: 16 observations 16 positions 0 regions with multiple methylated bases 0 observations with skips included 6 observations with too many skips Finished extracting signals Merging files... Training... ['A', 'A', 'A', 'A', 'A', 'A', 'A', 'A', 'A', 'A'] [[np.float64(1.1), np.float64(-0.23666666666666666), np.float64(0.28), np.float64(1.17), np.float64(-0.02), np.float64(0.6699999999999999), np.float64(7.055265349382997)], [np.float64(-0.53), np.float64(-2.56), np.float64(-0.45999999999999996), np.float64(-2.09), np.float64(-5.4), np.float64(1.05), np.float64(7.055265349382997)], [np.float64(0.06), np.float64(-1.5999999999999999), np.float64(-3.48), np.float64(1.365), np.float64(1.06), np.float64(3.94), np.float64(7.055265349382997)], [np.float64(2.98), np.float64(1.47), np.float64(-2.14), np.float64(5.63), np.float64(1.07), np.float64(5.135), np.float64(7.055265349382997)], [np.float64(-0.68), np.float64(-0.74), np.float64(-0.585), np.float64(-0.48), np.float64(-0.815), np.float64(-1.08), np.float64(7.055265349382997)], [np.float64(4.0249999999999995), np.float64(-0.11499999999999999), np.float64(-1.02), np.float64(-0.48), np.float64(0.17333333333333337), np.float64(1.19), np.float64(7.055265349382997)], [np.float64(-1.3733333333333333), np.float64(0.17999999999999994), np.float64(-0.6133333333333334), np.float64(-1.43), np.float64(-0.0050000000000000044), np.float64(-4.32), np.float64(7.055265349382997)], [np.float64(-0.1), np.float64(2.23), np.float64(-2.058), np.float64(2.78), np.float64(-0.68), np.float64(0.51), np.float64(7.055265349382997)], [np.float64(-2.7199999999999998), np.float64(-1.03), np.float64(-0.14), np.float64(2.625), np.float64(1.0375), np.float64(-1.075), np.float64(7.055265349382997)], [np.float64(-2.38), np.float64(-1.03), np.float64(-2.8833333333333333), np.float64(-0.59), np.float64(-4.31), np.float64(-4.94), np.float64(7.055265349382997)]] ['CATTAMCAATC', 'GCCCGMTATAT', 'TTTTGMGMTCC', 'TCGTGMATGCA', 'TAAAAMAGAGA', 'ATCAAMCCGAG', 'GCTTTMGCAAA', 'TGCGTMTTCAA', 'CTTCCMGCCAC', 'AGATAMTAAAT'] NN general model scores: 0.875,0.375,0.125,0.875,0.5 Cross validation accuracy: 0.55 (+/- 0.58) Finished training rm -rf testdata mv testdata_save testdata make[1]: Leaving directory '/build/reproducible-path/mcaller-1.0.3+git20210624.b415090' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/mcaller/ dh_install dh_installdocs dh_installchangelogs dh_installman dh_python3 dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package mcaller: substitution variable ${python3:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'mcaller' in '../mcaller_1.0.3+git20210624.b415090-3_all.deb'. dpkg-genbuildinfo --build=binary -O../mcaller_1.0.3+git20210624.b415090-3_arm64.buildinfo dpkg-genchanges --build=binary -O../mcaller_1.0.3+git20210624.b415090-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3481111 and its subdirectories I: Current time: Sat Oct 17 15:34:35 -12 2026 I: pbuilder-time-stamp: 1792294475 Sun Oct 18 03:34:35 UTC 2026 I: Signing ./b1/mcaller_1.0.3+git20210624.b415090-3_arm64.buildinfo as mcaller_1.0.3+git20210624.b415090-3_arm64.buildinfo.asc Sun Oct 18 03:34:35 UTC 2026 I: Signed ./b1/mcaller_1.0.3+git20210624.b415090-3_arm64.buildinfo as ./b1/mcaller_1.0.3+git20210624.b415090-3_arm64.buildinfo.asc Sun Oct 18 03:34:35 UTC 2026 - build #1 for mcaller/unstable/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Sun Oct 18 03:34:35 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-XtASr7Fr, removing. /srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Sep 14 21:11 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 14 21:09 b2 -rw-rw-r-- 1 jenkins jenkins 2372 Apr 27 2022 mcaller_1.0.3+git20210624.b415090-3.dsc -rw------- 1 jenkins jenkins 3584 Sep 14 21:09 rbuildlog.sX7ZYRW /srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w/b1: total 136 -rw-r--r-- 1 jenkins jenkins 70581 Sep 14 21:11 build.log -rw-r--r-- 1 jenkins jenkins 7488 Sep 14 21:11 mcaller_1.0.3+git20210624.b415090-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2372 Sep 14 21:11 mcaller_1.0.3+git20210624.b415090-3.dsc -rw-r--r-- 1 jenkins jenkins 18984 Sep 14 21:11 mcaller_1.0.3+git20210624.b415090-3_all.deb -rw-r--r-- 1 jenkins jenkins 8821 Sep 14 21:11 mcaller_1.0.3+git20210624.b415090-3_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 9703 Sep 14 21:11 mcaller_1.0.3+git20210624.b415090-3_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1200 Sep 14 21:11 mcaller_1.0.3+git20210624.b415090-3_arm64.changes -rw-r--r-- 1 jenkins jenkins 1434 Sep 14 21:11 mcaller_1.0.3+git20210624.b415090-3_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w/b2: total 0 Sun Sep 14 21:11:36 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Oct 17 15:32:37 -12 2026 I: pbuilder-time-stamp: 1792294357 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mcaller_1.0.3+git20210624.b415090-3.dsc] I: copying [./mcaller_1.0.3+git20210624.b415090.orig.tar.xz] I: copying [./mcaller_1.0.3+git20210624.b415090-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./mcaller_1.0.3+git20210624.b415090-3.dsc: no acceptable signature found dpkg-source: info: extracting mcaller in mcaller-1.0.3+git20210624.b415090 dpkg-source: info: unpacking mcaller_1.0.3+git20210624.b415090.orig.tar.xz dpkg-source: info: unpacking mcaller_1.0.3+git20210624.b415090-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying shebang.patch dpkg-source: info: applying python2to3.patch dpkg-source: info: applying prefixes.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3481111/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='c190a00a722e41fdba431604b4b4b1e6' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3481111' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w/pbuilderrc_wiSw --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w/b1 --logfile b1/build.log mcaller_1.0.3+git20210624.b415090-3.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3481111/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-seaborn, python3-biopython, python3-numpy, python3-sklearn dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-seaborn; however: Package python3-seaborn is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-sklearn; however: Package python3-sklearn is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libabsl20240722{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libblas3{a} libbrotli1{a} libcairo2{a} libdav1d7{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgpg-error0{a} libgraphite2-3{a} libharfbuzz0b{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} liblapack3{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} librav1e0.7{a} libreadline8t64{a} libsharpyuv0{a} libsvtav1enc2{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2-16{a} libxrender1{a} libxslt1.1{a} libxss1{a} libyuv0{a} libzopfli1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-attr{a} python3-autocommand{a} python3-biopython{a} python3-brotli{a} python3-cairo{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-fonttools{a} python3-freetype{a} python3-fs{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-joblib{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pyparsing{a} python3-pytz{a} python3-reportlab{a} python3-rlpycairo{a} python3-scipy{a} python3-seaborn{a} python3-setuptools{a} python3-sklearn{a} python3-sklearn-lib{a} python3-sympy{a} python3-threadpoolctl{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-ufolib2{a} python3-zipp{a} python3-zopfli{a} python3.13{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} sgml-base{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra isympy-common libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libltdl-dev libmail-sendmail-perl linux-sysctl-defaults lynx ncbi-blast+ psmisc python-biopython-doc python3-bottleneck python3-bs4 python3-cssselect python3-html5lib python3-jinja2 python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pooch python3-psutil python3-pytest python3-tables python3-tz python3-yaml shared-mime-info wget xdg-user-dirs 0 packages upgraded, 166 newly installed, 0 to remove and 0 not upgraded. Need to get 132 MB of archives. After unpacking 529 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.7.1-2 [93.3 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.7-1 [857 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.7-1 [2001 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.7-1 [1895 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.7-1 [761 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 python3-numpy-dev arm64 1:2.2.4+ds-1.2 [138 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.1-7 [135 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 15.2.0-4 [371 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.1-7 [1846 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 python3-numpy arm64 1:2.2.4+ds-1.2 [3620 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-9 [62.8 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-9 [871 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41.1-3 [98.1 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1 [982 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.50-1 [275 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libfontenc1 arm64 1:1.1.8-1+b2 [22.5 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+25 [217 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 xfonts-utils arm64 1:7.7+7 [89.3 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 48 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-2.4 [318 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-2.4 [387 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.12-1 [343 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.12-1 [795 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.12-1 [27.0 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libxft2 arm64 2.3.6-1+b4 [51.6 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libxss1 arm64 1:1.2.3-1+b3 [17.1 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libtk8.6 arm64 8.6.17-1 [740 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-8 [537 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 blt arm64 2.5.3+dfsg-8 [5984 B] Get: 62 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.26 [91.8 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-5 [540 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 68 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.16-2 [100 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.26 [939 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20250414 [116 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 fonts-lyx all 2.4.4-1 [190 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libabsl20240722 arm64 20240722.0-4 [452 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libaom3 arm64 3.12.1-1 [1670 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libdav1d7 arm64 1.5.1-1 [252 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 libgav1-1 arm64 0.19.0-3+b1 [491 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 librav1e0.7 arm64 0.7.1-9+b2 [662 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 libsvtav1enc2 arm64 2.3.0+dfsg-1 [1558 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-4 [173 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libyuv0 arm64 0.0.1916.20250814-1 [137 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libavif16 arm64 1.3.0-1 [127 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libcairo2 arm64 1.18.4-1+b1 [483 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libgpg-error0 arm64 1.55-2 [83.9 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libgcrypt20 arm64 1.11.2-2 [772 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.84.4-3 [1428 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-7 [70.5 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 11.4.5-1 [465 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libimagequant0 arm64 4.4.0-3 [216 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libopenjp2-7 arm64 2.5.3-2.1 [189 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 libqhull-r8.0 arm64 2020.2-7 [229 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libraqm0 arm64 0.10.3-1 [13.6 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.7.0-5 [331 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [113 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libxslt1.1 arm64 1.1.43-0.2 [145 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libzopfli1 arm64 1.0.3-3 [95.2 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 python-matplotlib-data all 3.10.1+dfsg1-5 [2737 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 python3-all arm64 3.13.7-1 [1044 B] Get: 114 http://deb.debian.org/debian unstable/main arm64 python3-attr all 25.3.0-1 [69.5 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 python3-charset-normalizer arm64 3.4.3-1 [123 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 python3.13-tk arm64 3.13.7-1 [105 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 python3-tk arm64 3.13.5-1 [9604 B] Get: 119 http://deb.debian.org/debian unstable/main arm64 python3-pil.imagetk arm64 11.3.0-1 [81.3 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 python3-pil arm64 11.3.0-1 [507 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 python3-cairo arm64 1.27.0-2 [114 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 python3-freetype all 2.5.1-2 [89.4 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 124 http://deb.debian.org/debian unstable/main arm64 python3-reportlab all 4.4.3-1 [1168 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 xml-core all 0.19 [20.1 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 python3-biopython arm64 1.85+dfsg-5 [1660 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 python3-brotli arm64 1.1.0-2+b7 [300 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 python3-contourpy arm64 1.3.1-2 [191 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 python3-cycler all 0.12.1-2 [9616 B] Get: 132 http://deb.debian.org/debian unstable/main arm64 python3-dateutil all 2.9.0-4 [79.4 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 python3-decorator all 5.2.1-2 [33.0 kB] Get: 134 http://deb.debian.org/debian unstable/main arm64 python3-platformdirs all 4.4.0-1 [16.7 kB] Get: 135 http://deb.debian.org/debian unstable/main arm64 python3-fs all 2.4.16-8 [95.2 kB] Get: 136 http://deb.debian.org/debian unstable/main arm64 python3-lxml arm64 6.0.1-1 [1265 kB] Get: 137 http://deb.debian.org/debian unstable/main arm64 python3-lz4 arm64 4.4.4+dfsg-1 [25.5 kB] Get: 138 http://deb.debian.org/debian unstable/main arm64 python3-scipy arm64 1.15.3-1.1 [15.1 MB] Get: 139 http://deb.debian.org/debian unstable/main arm64 python3-mpmath all 1.3.0-1 [419 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 python3-sympy all 1.14.0-2 [4228 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.0 kB] Get: 142 http://deb.debian.org/debian unstable/main arm64 python3-zopfli arm64 0.2.3.post1-1 [10.2 kB] Get: 143 http://deb.debian.org/debian unstable/main arm64 unicode-data all 16.0.0-1 [9197 kB] Get: 144 http://deb.debian.org/debian unstable/main arm64 python3-fonttools arm64 4.57.0-2 [1368 kB] Get: 145 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 146 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 147 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 148 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 149 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 150 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 151 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 152 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 154 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 155 http://deb.debian.org/debian unstable/main arm64 python3-joblib all 1.4.2-5 [216 kB] Get: 156 http://deb.debian.org/debian unstable/main arm64 python3-kiwisolver arm64 1.4.7-3+b1 [57.8 kB] Get: 157 http://deb.debian.org/debian unstable/main arm64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 158 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 25.0-1 [56.6 kB] Get: 159 http://deb.debian.org/debian unstable/main arm64 python3-matplotlib arm64 3.10.1+dfsg1-5 [23.7 MB] Get: 160 http://deb.debian.org/debian unstable/main arm64 python3-pytz all 2025.2-3 [152 kB] Get: 161 http://deb.debian.org/debian unstable/main arm64 python3-pandas-lib arm64 2.2.3+dfsg-9 [3877 kB] Get: 162 http://deb.debian.org/debian unstable/main arm64 python3-pandas all 2.2.3+dfsg-9 [3097 kB] Get: 163 http://deb.debian.org/debian unstable/main arm64 python3-seaborn all 0.13.2-5 [215 kB] Get: 164 http://deb.debian.org/debian unstable/main arm64 python3-threadpoolctl all 3.1.0-1 [21.2 kB] Get: 165 http://deb.debian.org/debian unstable/main arm64 python3-sklearn-lib arm64 1.4.2+dfsg-8 [3408 kB] Get: 166 http://deb.debian.org/debian unstable/main arm64 python3-sklearn all 1.4.2+dfsg-8 [2248 kB] Fetched 132 MB in 1s (193 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.7-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.7-1_arm64.deb ... Unpacking python3.13-minimal (3.13.7-1) ... Setting up libpython3.13-minimal:arm64 (3.13.7-1) ... Setting up libexpat1:arm64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20354 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_arm64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.5.2-2_arm64.deb ... Unpacking libffi8:arm64 (3.5.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.3-3_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_arm64.deb ... Unpacking python3.13 (3.13.7-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.13.7-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.13.7-1) ... Setting up python3-minimal (3.13.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21369 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.7-1_arm64.deb ... Unpacking python3 (3.13.7-1) ... Selecting previously unselected package python3-numpy-dev:arm64. Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.4+ds-1.2_arm64.deb ... Unpacking python3-numpy-dev:arm64 (1:2.2.4+ds-1.2) ... Selecting previously unselected package libblas3:arm64. Preparing to unpack .../002-libblas3_3.12.1-7_arm64.deb ... Unpacking libblas3:arm64 (3.12.1-7) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../003-libgfortran5_15.2.0-4_arm64.deb ... Unpacking libgfortran5:arm64 (15.2.0-4) ... Selecting previously unselected package liblapack3:arm64. Preparing to unpack .../004-liblapack3_3.12.1-7_arm64.deb ... Unpacking liblapack3:arm64 (3.12.1-7) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../005-python3-numpy_1%3a2.2.4+ds-1.2_arm64.deb ... Unpacking python3-numpy (1:2.2.4+ds-1.2) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../006-libproc2-0_2%3a4.0.4-9_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../007-procps_2%3a4.0.4-9_arm64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../008-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../009-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../010-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../011-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../012-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../013-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../014-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../015-bsdextrautils_2.41.1-3_arm64.deb ... Unpacking bsdextrautils (2.41.1-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../016-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../017-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../018-m4_1.4.20-1_arm64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. 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Setting up libtk8.6:arm64 (8.6.17-1) ... Setting up python3 (3.13.7-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-freetype (2.5.1-2) ... Setting up xfonts-utils (1:7.7+7) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:arm64 (1.18.4-1+b1) ... Setting up python3.13-tk (3.13.7-1) ... Setting up python3-platformdirs (4.4.0-1) ... Setting up python3-zopfli (0.2.3.post1-1) ... Setting up python3-fs (2.4.16-8) ... Setting up python3-decorator (5.2.1-2) ... Setting up python3-packaging (25.0-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-brotli (1.1.0-2+b7) ... Setting up libraqm0:arm64 (0.10.3-1) ... Setting up python3-cycler (0.12.1-2) ... Setting up python3-kiwisolver (1.4.7-3+b1) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-numpy (1:2.2.4+ds-1.2) ... Setting up python3-lxml:arm64 (6.0.1-1) ... 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Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/mcaller-1.0.3+git20210624.b415090/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mcaller_1.0.3+git20210624.b415090-3_source.changes dpkg-buildpackage: info: source package mcaller dpkg-buildpackage: info: source version 1.0.3+git20210624.b415090-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/mcaller-1.0.3+git20210624.b415090' dh_auto_clean #rm -f model_NN_6_m6A.pkl testdata/masonread1.eventalign.diffs.6 testdata/masonread1.eventalign.diffs.6.train rm -rf __pycache__ rm -f model_NN_6_m6A.pkl make[1]: Leaving directory '/build/reproducible-path/mcaller-1.0.3+git20210624.b415090' dh_clean debian/rules binary dh binary --with python3 dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/mcaller-1.0.3+git20210624.b415090' cp -a testdata testdata_save ./mCaller.py -p testdata/test_positions_A.txt -r testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv -d r95_twobase_model_NN_6_m6A.pkl -f testdata/masonread1.fastq testdata/ 1 contigs 1 threads thread finished processing...: 35 observations 35 positions 0 regions with multiple methylated bases 0 observations with skips included 8 observations with too many skips Finished extracting signals ./mCaller.py -p testdata/test_positions_m6A.txt -r testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv -d r95_twobase_model_NN_6_m6A.pkl -f testdata/masonread1.fastq testdata/ 1 contigs 1 threads thread finished processing...: 9 observations 9 positions 0 regions with multiple methylated bases 0 observations with skips included 2 observations with too many skips Finished extracting signals ./mCaller.py -p testdata/test_positions.txt -r testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv -t 4 --train -f testdata/masonread1.fastq testdata/ 1 contigs 4 threads thread finished processing...: 44 observations 44 positions 1 regions with multiple methylated bases 0 observations with skips included 10 observations with too many skips thread finished processing...: 9 observations 9 positions 0 regions with multiple methylated bases 0 observations with skips included 4 observations with too many skips thread finished processing...: 28 observations 28 positions 0 regions with multiple methylated bases 0 observations with skips included 6 observations with too many skips Error: could not find sequence for reference contig li thread finished processing...: 16 observations 16 positions 0 regions with multiple methylated bases 0 observations with skips included 6 observations with too many skips Finished extracting signals Merging files... Training... ['A', 'A', 'A', 'A', 'A', 'A', 'A', 'A', 'A', 'A'] [[np.float64(1.1), np.float64(-0.23666666666666666), np.float64(0.28), np.float64(1.17), np.float64(-0.02), np.float64(0.6699999999999999), np.float64(7.055265349382997)], [np.float64(-0.53), np.float64(-2.56), np.float64(-0.45999999999999996), np.float64(-2.09), np.float64(-5.4), np.float64(1.05), np.float64(7.055265349382997)], [np.float64(0.06), np.float64(-1.5999999999999999), np.float64(-3.48), np.float64(1.365), np.float64(1.06), np.float64(3.94), np.float64(7.055265349382997)], [np.float64(2.98), np.float64(1.47), np.float64(-2.14), np.float64(5.63), np.float64(1.07), np.float64(5.135), np.float64(7.055265349382997)], [np.float64(-0.68), np.float64(-0.74), np.float64(-0.585), np.float64(-0.48), np.float64(-0.815), np.float64(-1.08), np.float64(7.055265349382997)], [np.float64(4.0249999999999995), np.float64(-0.11499999999999999), np.float64(-1.02), np.float64(-0.48), np.float64(0.17333333333333337), np.float64(1.19), np.float64(7.055265349382997)], [np.float64(-1.3733333333333333), np.float64(0.17999999999999994), np.float64(-0.6133333333333334), np.float64(-1.43), np.float64(-0.0050000000000000044), np.float64(-4.32), np.float64(7.055265349382997)], [np.float64(-0.1), np.float64(2.23), np.float64(-2.058), np.float64(2.78), np.float64(-0.68), np.float64(0.51), np.float64(7.055265349382997)], [np.float64(-2.7199999999999998), np.float64(-1.03), np.float64(-0.14), np.float64(2.625), np.float64(1.0375), np.float64(-1.075), np.float64(7.055265349382997)], [np.float64(-2.38), np.float64(-1.03), np.float64(-2.8833333333333333), np.float64(-0.59), np.float64(-4.31), np.float64(-4.94), np.float64(7.055265349382997)]] ['CATTAMCAATC', 'GCCCGMTATAT', 'TTTTGMGMTCC', 'TCGTGMATGCA', 'TAAAAMAGAGA', 'ATCAAMCCGAG', 'GCTTTMGCAAA', 'TGCGTMTTCAA', 'CTTCCMGCCAC', 'AGATAMTAAAT'] NN general model scores: 0.875,0.375,0.125,0.875,0.5 Cross validation accuracy: 0.55 (+/- 0.58) Finished training rm -rf testdata mv testdata_save testdata make[1]: Leaving directory '/build/reproducible-path/mcaller-1.0.3+git20210624.b415090' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/mcaller/ dh_install dh_installdocs dh_installchangelogs dh_installman dh_python3 dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package mcaller: substitution variable ${python3:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'mcaller' in '../mcaller_1.0.3+git20210624.b415090-3_all.deb'. dpkg-genbuildinfo --build=binary -O../mcaller_1.0.3+git20210624.b415090-3_arm64.buildinfo dpkg-genchanges --build=binary -O../mcaller_1.0.3+git20210624.b415090-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3481111 and its subdirectories I: Current time: Sat Oct 17 15:34:35 -12 2026 I: pbuilder-time-stamp: 1792294475 Sun Sep 14 21:11:36 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Sun Sep 14 21:11:36 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Sun Sep 14 21:11:36 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Sun Sep 14 21:11:36 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-uK4jbw' ==================================================================================== Sun Sep 14 21:11:37 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "2 mcaller unstable /srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w 1.0.3+git20210624.b415090-3" as arguments. Sun Sep 14 21:11:37 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-cnP0iC4a" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Sep 14 21:11:37 UTC 2025 I: Downloading source for unstable/mcaller=1.0.3+git20210624.b415090-3 Reading package lists... NOTICE: 'mcaller' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/mcaller.git Please use: git clone https://salsa.debian.org/med-team/mcaller.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 6622 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main mcaller 1.0.3+git20210624.b415090-3 (dsc) [2372 B] Get:2 http://deb.debian.org/debian unstable/main mcaller 1.0.3+git20210624.b415090-3 (tar) [6613 kB] Get:3 http://deb.debian.org/debian unstable/main mcaller 1.0.3+git20210624.b415090-3 (diff) [7488 B] Fetched 6622 kB in 0s (156 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'mcaller' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/mcaller.git Please use: git clone https://salsa.debian.org/med-team/mcaller.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 6622 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main mcaller 1.0.3+git20210624.b415090-3 (dsc) [2372 B] Get:2 http://deb.debian.org/debian unstable/main mcaller 1.0.3+git20210624.b415090-3 (tar) [6613 kB] Get:3 http://deb.debian.org/debian unstable/main mcaller 1.0.3+git20210624.b415090-3 (diff) [7488 B] Fetched 6622 kB in 0s (156 MB/s) Download complete and in download only mode ============================================================================= Re-Building mcaller in unstable on arm64 on codethink04-arm64 now. Date: Sun Sep 14 22:11:38 BST 2025 Date UTC: Sun Sep 14 21:11:38 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w/pbuilderrc_3lyc + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' mcaller = debian-installer -o mcaller = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' mcaller = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w/pbuilderrc_3lyc --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w/b2 --logfile b2/build.log mcaller_1.0.3+git20210624.b415090-3.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Mon Sep 15 11:11:38 +14 2025 I: pbuilder-time-stamp: 1757884298 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mcaller_1.0.3+git20210624.b415090-3.dsc] I: copying [./mcaller_1.0.3+git20210624.b415090.orig.tar.xz] I: copying [./mcaller_1.0.3+git20210624.b415090-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./mcaller_1.0.3+git20210624.b415090-3.dsc: no acceptable signature found dpkg-source: info: extracting mcaller in mcaller-1.0.3+git20210624.b415090 dpkg-source: info: unpacking mcaller_1.0.3+git20210624.b415090.orig.tar.xz dpkg-source: info: unpacking mcaller_1.0.3+git20210624.b415090-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying shebang.patch dpkg-source: info: applying python2to3.patch dpkg-source: info: applying prefixes.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2255697/tmp/hooks/D01_modify_environment starting debug: Running on codethink04-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Sep 14 21:11 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2255697/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2255697/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=9575d89e948f486185f1db0ee69a41e8 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2255697 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w/pbuilderrc_3lyc --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w/b2 --logfile b2/build.log mcaller_1.0.3+git20210624.b415090-3.dsc' SUDO_GID=109 SUDO_HOME=/var/lib/jenkins SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2255697/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-seaborn, python3-biopython, python3-numpy, python3-sklearn dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-seaborn; however: Package python3-seaborn is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-sklearn; however: Package python3-sklearn is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libabsl20240722{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libblas3{a} libbrotli1{a} libcairo2{a} libdav1d7{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgpg-error0{a} libgraphite2-3{a} libharfbuzz0b{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} liblapack3{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} librav1e0.7{a} libreadline8t64{a} libsharpyuv0{a} libsvtav1enc2{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2-16{a} libxrender1{a} libxslt1.1{a} libxss1{a} libyuv0{a} libzopfli1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-attr{a} python3-autocommand{a} python3-biopython{a} python3-brotli{a} python3-cairo{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-fonttools{a} python3-freetype{a} python3-fs{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-joblib{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pyparsing{a} python3-pytz{a} python3-reportlab{a} python3-rlpycairo{a} python3-scipy{a} python3-seaborn{a} python3-setuptools{a} python3-sklearn{a} python3-sklearn-lib{a} python3-sympy{a} python3-threadpoolctl{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-ufolib2{a} python3-zipp{a} python3-zopfli{a} python3.13{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} sgml-base{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra isympy-common libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libltdl-dev libmail-sendmail-perl linux-sysctl-defaults lynx ncbi-blast+ psmisc python-biopython-doc python3-bottleneck python3-bs4 python3-cssselect python3-html5lib python3-jinja2 python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pooch python3-psutil python3-pytest python3-tables python3-tz python3-yaml shared-mime-info wget xdg-user-dirs 0 packages upgraded, 166 newly installed, 0 to remove and 0 not upgraded. Need to get 132 MB of archives. After unpacking 529 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.7.1-2 [93.3 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.7-1 [857 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.7-1 [2001 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.7-1 [1895 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.7-1 [761 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 python3-numpy-dev arm64 1:2.2.4+ds-1.2 [138 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.1-7 [135 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 15.2.0-4 [371 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.1-7 [1846 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 python3-numpy arm64 1:2.2.4+ds-1.2 [3620 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-9 [62.8 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-9 [871 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41.1-3 [98.1 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1 [982 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.50-1 [275 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libfontenc1 arm64 1:1.1.8-1+b2 [22.5 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+25 [217 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 xfonts-utils arm64 1:7.7+7 [89.3 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 48 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-2.4 [318 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-2.4 [387 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.12-1 [343 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.12-1 [795 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.12-1 [27.0 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libxft2 arm64 2.3.6-1+b4 [51.6 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libxss1 arm64 1:1.2.3-1+b3 [17.1 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libtk8.6 arm64 8.6.17-1 [740 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-8 [537 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 blt arm64 2.5.3+dfsg-8 [5984 B] Get: 62 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.26 [91.8 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-5 [540 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 68 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.16-2 [100 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.26 [939 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20250414 [116 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 fonts-lyx all 2.4.4-1 [190 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libabsl20240722 arm64 20240722.0-4 [452 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libaom3 arm64 3.12.1-1 [1670 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libdav1d7 arm64 1.5.1-1 [252 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 libgav1-1 arm64 0.19.0-3+b1 [491 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 librav1e0.7 arm64 0.7.1-9+b2 [662 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 libsvtav1enc2 arm64 2.3.0+dfsg-1 [1558 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-4 [173 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libyuv0 arm64 0.0.1916.20250814-1 [137 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libavif16 arm64 1.3.0-1 [127 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libcairo2 arm64 1.18.4-1+b1 [483 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libgpg-error0 arm64 1.55-2 [83.9 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libgcrypt20 arm64 1.11.2-2 [772 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.84.4-3 [1428 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-7 [70.5 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 11.4.5-1 [465 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libimagequant0 arm64 4.4.0-3 [216 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libopenjp2-7 arm64 2.5.3-2.1 [189 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 libqhull-r8.0 arm64 2020.2-7 [229 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libraqm0 arm64 0.10.3-1 [13.6 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.7.0-5 [331 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [113 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libxslt1.1 arm64 1.1.43-0.2 [145 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libzopfli1 arm64 1.0.3-3 [95.2 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 python-matplotlib-data all 3.10.1+dfsg1-5 [2737 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 python3-all arm64 3.13.7-1 [1044 B] Get: 114 http://deb.debian.org/debian unstable/main arm64 python3-attr all 25.3.0-1 [69.5 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 python3-charset-normalizer arm64 3.4.3-1 [123 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 python3.13-tk arm64 3.13.7-1 [105 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 python3-tk arm64 3.13.5-1 [9604 B] Get: 119 http://deb.debian.org/debian unstable/main arm64 python3-pil.imagetk arm64 11.3.0-1 [81.3 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 python3-pil arm64 11.3.0-1 [507 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 python3-cairo arm64 1.27.0-2 [114 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 python3-freetype all 2.5.1-2 [89.4 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 124 http://deb.debian.org/debian unstable/main arm64 python3-reportlab all 4.4.3-1 [1168 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 xml-core all 0.19 [20.1 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 python3-biopython arm64 1.85+dfsg-5 [1660 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 python3-brotli arm64 1.1.0-2+b7 [300 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 python3-contourpy arm64 1.3.1-2 [191 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 python3-cycler all 0.12.1-2 [9616 B] Get: 132 http://deb.debian.org/debian unstable/main arm64 python3-dateutil all 2.9.0-4 [79.4 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 python3-decorator all 5.2.1-2 [33.0 kB] Get: 134 http://deb.debian.org/debian unstable/main arm64 python3-platformdirs all 4.4.0-1 [16.7 kB] Get: 135 http://deb.debian.org/debian unstable/main arm64 python3-fs all 2.4.16-8 [95.2 kB] Get: 136 http://deb.debian.org/debian unstable/main arm64 python3-lxml arm64 6.0.1-1 [1265 kB] Get: 137 http://deb.debian.org/debian unstable/main arm64 python3-lz4 arm64 4.4.4+dfsg-1 [25.5 kB] Get: 138 http://deb.debian.org/debian unstable/main arm64 python3-scipy arm64 1.15.3-1.1 [15.1 MB] Get: 139 http://deb.debian.org/debian unstable/main arm64 python3-mpmath all 1.3.0-1 [419 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 python3-sympy all 1.14.0-2 [4228 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.0 kB] Get: 142 http://deb.debian.org/debian unstable/main arm64 python3-zopfli arm64 0.2.3.post1-1 [10.2 kB] Get: 143 http://deb.debian.org/debian unstable/main arm64 unicode-data all 16.0.0-1 [9197 kB] Get: 144 http://deb.debian.org/debian unstable/main arm64 python3-fonttools arm64 4.57.0-2 [1368 kB] Get: 145 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 146 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 147 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 148 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 149 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 150 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 151 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 152 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 154 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 155 http://deb.debian.org/debian unstable/main arm64 python3-joblib all 1.4.2-5 [216 kB] Get: 156 http://deb.debian.org/debian unstable/main arm64 python3-kiwisolver arm64 1.4.7-3+b1 [57.8 kB] Get: 157 http://deb.debian.org/debian unstable/main arm64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 158 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 25.0-1 [56.6 kB] Get: 159 http://deb.debian.org/debian unstable/main arm64 python3-matplotlib arm64 3.10.1+dfsg1-5 [23.7 MB] Get: 160 http://deb.debian.org/debian unstable/main arm64 python3-pytz all 2025.2-3 [152 kB] Get: 161 http://deb.debian.org/debian unstable/main arm64 python3-pandas-lib arm64 2.2.3+dfsg-9 [3877 kB] Get: 162 http://deb.debian.org/debian unstable/main arm64 python3-pandas all 2.2.3+dfsg-9 [3097 kB] Get: 163 http://deb.debian.org/debian unstable/main arm64 python3-seaborn all 0.13.2-5 [215 kB] Get: 164 http://deb.debian.org/debian unstable/main arm64 python3-threadpoolctl all 3.1.0-1 [21.2 kB] Get: 165 http://deb.debian.org/debian unstable/main arm64 python3-sklearn-lib arm64 1.4.2+dfsg-8 [3408 kB] Get: 166 http://deb.debian.org/debian unstable/main arm64 python3-sklearn all 1.4.2+dfsg-8 [2248 kB] Fetched 132 MB in 1s (188 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.7-1) ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_arm64.deb ... Unpacking python3.13 (3.13.7-1) ... 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Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2255697/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/2255697/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/mcaller-1.0.3+git20210624.b415090/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mcaller_1.0.3+git20210624.b415090-3_source.changes dpkg-buildpackage: info: source package mcaller dpkg-buildpackage: info: source version 1.0.3+git20210624.b415090-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/mcaller-1.0.3+git20210624.b415090' dh_auto_clean #rm -f model_NN_6_m6A.pkl testdata/masonread1.eventalign.diffs.6 testdata/masonread1.eventalign.diffs.6.train rm -rf __pycache__ rm -f model_NN_6_m6A.pkl make[1]: Leaving directory '/build/reproducible-path/mcaller-1.0.3+git20210624.b415090' dh_clean debian/rules binary dh binary --with python3 dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/mcaller-1.0.3+git20210624.b415090' cp -a testdata testdata_save ./mCaller.py -p testdata/test_positions_A.txt -r testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv -d r95_twobase_model_NN_6_m6A.pkl -f testdata/masonread1.fastq testdata/ 1 contigs 1 threads thread finished processing...: 35 observations 35 positions 0 regions with multiple methylated bases 0 observations with skips included 8 observations with too many skips Finished extracting signals ./mCaller.py -p testdata/test_positions_m6A.txt -r testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv -d r95_twobase_model_NN_6_m6A.pkl -f testdata/masonread1.fastq testdata/ 1 contigs 1 threads thread finished processing...: 9 observations 9 positions 0 regions with multiple methylated bases 0 observations with skips included 2 observations with too many skips Finished extracting signals ./mCaller.py -p testdata/test_positions.txt -r testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv -t 4 --train -f testdata/masonread1.fastq testdata/ 1 contigs 4 threads thread finished processing...: 9 observations 9 positions 0 regions with multiple methylated bases 0 observations with skips included 4 observations with too many skips Error: could not find sequence for reference contig li thread finished processing...: 16 observations 16 positions 0 regions with multiple methylated bases 0 observations with skips included 6 observations with too many skips thread finished processing...: 28 observations 28 positions 0 regions with multiple methylated bases 0 observations with skips included 6 observations with too many skips thread finished processing...: 44 observations 44 positions 1 regions with multiple methylated bases 0 observations with skips included 10 observations with too many skips Finished extracting signals Merging files... Training... ['A', 'A', 'A', 'A', 'A', 'A', 'A', 'A', 'A', 'A'] [[np.float64(-0.18999999999999992), np.float64(-1.6799999999999997), np.float64(-2.3), np.float64(0.56), np.float64(-1.41), np.float64(1.48), np.float64(7.055265349382997)], [np.float64(-1.1300000000000001), np.float64(-1.67), np.float64(-1.1), np.float64(-0.5774999999999999), np.float64(0.42), np.float64(1.0225), np.float64(7.055265349382997)], [np.float64(0.0050000000000000044), np.float64(-0.29500000000000004), np.float64(-0.54), np.float64(3.96), np.float64(1.47), np.float64(0.06499999999999995), np.float64(7.055265349382997)], [np.float64(3.255), np.float64(3.925), np.float64(0.03999999999999998), np.float64(-0.15599999999999997), np.float64(-1.01), np.float64(1.3533333333333333), np.float64(7.055265349382997)], [np.float64(-0.07999999999999996), np.float64(-1.3666666666666665), np.float64(0.84), np.float64(-0.5449999999999999), np.float64(-3.22), np.float64(-1.53), np.float64(7.055265349382997)], [np.float64(-1.74), np.float64(-2.56), np.float64(-2.0774999999999997), np.float64(1.84), np.float64(-0.09999999999999998), np.float64(-0.3), np.float64(7.055265349382997)], [np.float64(1.92), np.float64(2.75), np.float64(1.59), np.float64(1.6433333333333333), np.float64(1.59), np.float64(1.27), np.float64(7.055265349382997)], [np.float64(-2.15), np.float64(1.8849999999999998), np.float64(2.58), np.float64(-0.36), np.float64(4.26), np.float64(-2.4625), np.float64(7.055265349382997)], [np.float64(1.485), np.float64(4.095000000000001), np.float64(-1.12), np.float64(-0.91), np.float64(-0.62), np.float64(1.17), np.float64(7.055265349382997)], [np.float64(1.095), np.float64(0.78), np.float64(-2.38), np.float64(1.47), np.float64(-1.7149999999999999), np.float64(-0.8283333333333335), np.float64(7.055265349382997)]] ['GGATTMTTTCA', 'CTGGAMAAAGC', 'GGGCCMTTACC', 'GGTGGMTGAAT', 'GGTTAMCGCGT', 'TGTGGMGAAAC', 'AGAACMCTTTC', 'AGGCCMTTCAA', 'AATCAMAAGAA', 'TACTTMCCGCA'] NN general model scores: 0.875,0.375,0.25,1.0,0.625 Cross validation accuracy: 0.62 (+/- 0.57) Finished training rm -rf testdata mv testdata_save testdata make[1]: Leaving directory '/build/reproducible-path/mcaller-1.0.3+git20210624.b415090' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/mcaller/ dh_install dh_installdocs dh_installchangelogs dh_installman dh_python3 dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package mcaller: substitution variable ${python3:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'mcaller' in '../mcaller_1.0.3+git20210624.b415090-3_all.deb'. dpkg-genbuildinfo --build=binary -O../mcaller_1.0.3+git20210624.b415090-3_arm64.buildinfo dpkg-genchanges --build=binary -O../mcaller_1.0.3+git20210624.b415090-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2255697/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2255697/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2255697 and its subdirectories I: Current time: Mon Sep 15 11:20:08 +14 2025 I: pbuilder-time-stamp: 1757884808 + false + set +x Sun Sep 14 21:20:08 UTC 2025 I: Signing ./b2/mcaller_1.0.3+git20210624.b415090-3_arm64.buildinfo as mcaller_1.0.3+git20210624.b415090-3_arm64.buildinfo.asc Sun Sep 14 21:20:08 UTC 2025 I: Signed ./b2/mcaller_1.0.3+git20210624.b415090-3_arm64.buildinfo as ./b2/mcaller_1.0.3+git20210624.b415090-3_arm64.buildinfo.asc Sun Sep 14 21:20:08 UTC 2025 - build #2 for mcaller/unstable/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Sun Sep 14 21:20:08 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-cnP0iC4a, removing. /srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w: total 92 drwxrwxr-x 2 jenkins jenkins 4096 Sep 14 21:11 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 14 21:20 b2 -rw-rw-r-- 1 jenkins jenkins 2372 Apr 27 2022 mcaller_1.0.3+git20210624.b415090-3.dsc -rw------- 1 jenkins jenkins 74466 Sep 14 21:11 rbuildlog.sX7ZYRW /srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w/b1: total 140 -rw-r--r-- 1 jenkins jenkins 70581 Sep 14 21:11 build.log -rw-r--r-- 1 jenkins jenkins 7488 Sep 14 21:11 mcaller_1.0.3+git20210624.b415090-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2372 Sep 14 21:11 mcaller_1.0.3+git20210624.b415090-3.dsc -rw-r--r-- 1 jenkins jenkins 18984 Sep 14 21:11 mcaller_1.0.3+git20210624.b415090-3_all.deb -rw-r--r-- 1 jenkins jenkins 8821 Sep 14 21:11 mcaller_1.0.3+git20210624.b415090-3_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 9703 Sep 14 21:11 mcaller_1.0.3+git20210624.b415090-3_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1200 Sep 14 21:11 mcaller_1.0.3+git20210624.b415090-3_arm64.changes -rw-r--r-- 1 jenkins jenkins 1434 Sep 14 21:11 mcaller_1.0.3+git20210624.b415090-3_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w/b2: total 136 -rw-rw-r-- 1 jenkins jenkins 72613 Sep 14 21:20 build.log -rw-r--r-- 1 jenkins jenkins 7488 Sep 14 21:20 mcaller_1.0.3+git20210624.b415090-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2372 Sep 14 21:20 mcaller_1.0.3+git20210624.b415090-3.dsc -rw-r--r-- 1 jenkins jenkins 18984 Sep 14 21:20 mcaller_1.0.3+git20210624.b415090-3_all.deb -rw-rw-r-- 1 jenkins jenkins 8821 Sep 14 21:20 mcaller_1.0.3+git20210624.b415090-3_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 9703 Sep 14 21:20 mcaller_1.0.3+git20210624.b415090-3_arm64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1200 Sep 14 21:20 mcaller_1.0.3+git20210624.b415090-3_arm64.changes -rw-rw-r-- 1 jenkins jenkins 1434 Sep 14 21:20 mcaller_1.0.3+git20210624.b415090-3_source.changes Sun Sep 14 21:20:09 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Sun Sep 14 21:20:09 UTC 2025 I: mcaller_1.0.3+git20210624.b415090-3_arm64.changes: Format: 1.8 Date: Thu, 28 Apr 2022 00:24:38 +0200 Source: mcaller Binary: mcaller Architecture: all Version: 1.0.3+git20210624.b415090-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: mcaller - find methylation in nanopore reads Changes: mcaller (1.0.3+git20210624.b415090-3) unstable; urgency=medium . * Team upload. * d/t/control: declare test unsupported on S390x Checksums-Sha1: feb6bdc9e8036b5bdde424a53554c27fa3496d5f 18984 mcaller_1.0.3+git20210624.b415090-3_all.deb 6665b409004e31c2f4d5220a54b704acb57098c2 8821 mcaller_1.0.3+git20210624.b415090-3_arm64.buildinfo Checksums-Sha256: 0b7e322886b6f13c891a65fe9461c678e1839a5a5a841596269ca96f8b8a2cc7 18984 mcaller_1.0.3+git20210624.b415090-3_all.deb 8ef97a359af5acd41bd48ac5219b65ce26a080c2112458c10c31fdbc4d8c5add 8821 mcaller_1.0.3+git20210624.b415090-3_arm64.buildinfo Files: a8c24d9e9a52cea806516b5c50368ea0 18984 science optional mcaller_1.0.3+git20210624.b415090-3_all.deb 9c1f90013d2ce78c379763c5fa5dd0ba 8821 science optional mcaller_1.0.3+git20210624.b415090-3_arm64.buildinfo removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/mcaller_1.0.3+git20210624.b415090-3.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/mcaller_1.0.3+git20210624.b415090-3.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/mcaller_1.0.3+git20210624.b415090-3.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/mcaller_1.0.3+git20210624.b415090-3.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/arm64/mcaller_1.0.3+git20210624.b415090-3_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/mcaller_1.0.3+git20210624.b415090-3.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-09-14 21:11:36.316410209 +0000 +++ b2/build.log 2025-09-14 21:20:09.217052718 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Oct 17 15:32:37 -12 2026 -I: pbuilder-time-stamp: 1792294357 +I: Current time: Mon Sep 15 11:11:38 +14 2025 +I: pbuilder-time-stamp: 1757884298 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -26,53 +26,85 @@ dpkg-source: info: applying prefixes.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3481111/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2255697/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Sep 14 21:11 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2255697/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2255697/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='c190a00a722e41fdba431604b4b4b1e6' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3481111' - PS1='# ' - PS2='> ' + INVOCATION_ID=9575d89e948f486185f1db0ee69a41e8 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2255697 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w/pbuilderrc_wiSw --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w/b1 --logfile b1/build.log mcaller_1.0.3+git20210624.b415090-3.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w/pbuilderrc_3lyc --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w/b2 --logfile b2/build.log mcaller_1.0.3+git20210624.b415090-3.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3481111/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2255697/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -288,7 +320,7 @@ Get: 164 http://deb.debian.org/debian unstable/main arm64 python3-threadpoolctl all 3.1.0-1 [21.2 kB] Get: 165 http://deb.debian.org/debian unstable/main arm64 python3-sklearn-lib arm64 1.4.2+dfsg-8 [3408 kB] Get: 166 http://deb.debian.org/debian unstable/main arm64 python3-sklearn all 1.4.2+dfsg-8 [2248 kB] -Fetched 132 MB in 1s (193 MB/s) +Fetched 132 MB in 1s (188 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) @@ -836,8 +868,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun Oct 18 03:33:10 UTC 2026. -Universal Time is now: Sun Oct 18 03:33:10 UTC 2026. +Local time is now: Sun Sep 14 21:12:10 UTC 2025. +Universal Time is now: Sun Sep 14 21:12:10 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (16.0.0-1) ... @@ -985,7 +1017,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/mcaller-1.0.3+git20210624.b415090/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mcaller_1.0.3+git20210624.b415090-3_source.changes +I: user script /srv/workspace/pbuilder/2255697/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2255697/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/mcaller-1.0.3+git20210624.b415090/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mcaller_1.0.3+git20210624.b415090-3_source.changes dpkg-buildpackage: info: source package mcaller dpkg-buildpackage: info: source version 1.0.3+git20210624.b415090-3 dpkg-buildpackage: info: source distribution unstable @@ -1036,38 +1072,38 @@ 1 contigs 4 threads thread finished processing...: -44 observations -44 positions -1 regions with multiple methylated bases -0 observations with skips included -10 observations with too many skips -thread finished processing...: 9 observations 9 positions 0 regions with multiple methylated bases 0 observations with skips included 4 observations with too many skips +Error: could not find sequence for reference contig li thread finished processing...: -28 observations -28 positions +16 observations +16 positions 0 regions with multiple methylated bases 0 observations with skips included 6 observations with too many skips -Error: could not find sequence for reference contig li thread finished processing...: -16 observations -16 positions +28 observations +28 positions 0 regions with multiple methylated bases 0 observations with skips included 6 observations with too many skips +thread finished processing...: +44 observations +44 positions +1 regions with multiple methylated bases +0 observations with skips included +10 observations with too many skips Finished extracting signals Merging files... Training... ['A', 'A', 'A', 'A', 'A', 'A', 'A', 'A', 'A', 'A'] -[[np.float64(1.1), np.float64(-0.23666666666666666), np.float64(0.28), np.float64(1.17), np.float64(-0.02), np.float64(0.6699999999999999), np.float64(7.055265349382997)], [np.float64(-0.53), np.float64(-2.56), np.float64(-0.45999999999999996), np.float64(-2.09), np.float64(-5.4), np.float64(1.05), np.float64(7.055265349382997)], [np.float64(0.06), np.float64(-1.5999999999999999), np.float64(-3.48), np.float64(1.365), np.float64(1.06), np.float64(3.94), np.float64(7.055265349382997)], [np.float64(2.98), np.float64(1.47), np.float64(-2.14), np.float64(5.63), np.float64(1.07), np.float64(5.135), np.float64(7.055265349382997)], [np.float64(-0.68), np.float64(-0.74), np.float64(-0.585), np.float64(-0.48), np.float64(-0.815), np.float64(-1.08), np.float64(7.055265349382997)], [np.float64(4.0249999999999995), np.float64(-0.11499999999999999), np.float64(-1.02), np.float64(-0.48), np.float64(0.17333333333333337), np.float64(1.19), np.float64(7.055265349382997)], [np.float64(-1.3733333333333333), np.float64(0.17999999999999994), np.float64(-0.6133333333333334), np.float64(-1.43), np.float64(-0.0050000000000000044), np.float64(-4.32), np.float64(7.055265349382997)], [np.float64(-0.1), np.float64(2.23), np.float64(-2.058), np.float64(2.78), np.float64(-0.68), np.float64(0.51), np.float64(7.055265349382997)], [np.float64(-2.7199999999999998), np.float64(-1.03), np.float64(-0.14), np.float64(2.625), np.float64(1.0375), np.float64(-1.075), np.float64(7.055265349382997)], [np.float64(-2.38), np.float64(-1.03), np.float64(-2.8833333333333333), np.float64(-0.59), np.float64(-4.31), np.float64(-4.94), np.float64(7.055265349382997)]] -['CATTAMCAATC', 'GCCCGMTATAT', 'TTTTGMGMTCC', 'TCGTGMATGCA', 'TAAAAMAGAGA', 'ATCAAMCCGAG', 'GCTTTMGCAAA', 'TGCGTMTTCAA', 'CTTCCMGCCAC', 'AGATAMTAAAT'] -NN general model scores: 0.875,0.375,0.125,0.875,0.5 -Cross validation accuracy: 0.55 (+/- 0.58) +[[np.float64(-0.18999999999999992), np.float64(-1.6799999999999997), np.float64(-2.3), np.float64(0.56), np.float64(-1.41), np.float64(1.48), np.float64(7.055265349382997)], [np.float64(-1.1300000000000001), np.float64(-1.67), np.float64(-1.1), np.float64(-0.5774999999999999), np.float64(0.42), np.float64(1.0225), np.float64(7.055265349382997)], [np.float64(0.0050000000000000044), np.float64(-0.29500000000000004), np.float64(-0.54), np.float64(3.96), np.float64(1.47), np.float64(0.06499999999999995), np.float64(7.055265349382997)], [np.float64(3.255), np.float64(3.925), np.float64(0.03999999999999998), np.float64(-0.15599999999999997), np.float64(-1.01), np.float64(1.3533333333333333), np.float64(7.055265349382997)], [np.float64(-0.07999999999999996), np.float64(-1.3666666666666665), np.float64(0.84), np.float64(-0.5449999999999999), np.float64(-3.22), np.float64(-1.53), np.float64(7.055265349382997)], [np.float64(-1.74), np.float64(-2.56), np.float64(-2.0774999999999997), np.float64(1.84), np.float64(-0.09999999999999998), np.float64(-0.3), np.float64(7.055265349382997)], [np.float64(1.92), np.float64(2.75), np.float64(1.59), np.float64(1.6433333333333333), np.float64(1.59), np.float64(1.27), np.float64(7.055265349382997)], [np.float64(-2.15), np.float64(1.8849999999999998), np.float64(2.58), np.float64(-0.36), np.float64(4.26), np.float64(-2.4625), np.float64(7.055265349382997)], [np.float64(1.485), np.float64(4.095000000000001), np.float64(-1.12), np.float64(-0.91), np.float64(-0.62), np.float64(1.17), np.float64(7.055265349382997)], [np.float64(1.095), np.float64(0.78), np.float64(-2.38), np.float64(1.47), np.float64(-1.7149999999999999), np.float64(-0.8283333333333335), np.float64(7.055265349382997)]] +['GGATTMTTTCA', 'CTGGAMAAAGC', 'GGGCCMTTACC', 'GGTGGMTGAAT', 'GGTTAMCGCGT', 'TGTGGMGAAAC', 'AGAACMCTTTC', 'AGGCCMTTCAA', 'AATCAMAAGAA', 'TACTTMCCGCA'] +NN general model scores: 0.875,0.375,0.25,1.0,0.625 +Cross validation accuracy: 0.62 (+/- 0.57) Finished training rm -rf testdata mv testdata_save testdata @@ -1100,12 +1136,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2255697/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2255697/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3481111 and its subdirectories -I: Current time: Sat Oct 17 15:34:35 -12 2026 -I: pbuilder-time-stamp: 1792294475 +I: removing directory /srv/workspace/pbuilder/2255697 and its subdirectories +I: Current time: Mon Sep 15 11:20:08 +14 2025 +I: pbuilder-time-stamp: 1757884808 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/mcaller_1.0.3+git20210624.b415090-3.diff: 70.9% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/mcaller_1.0.3+git20210624.b415090-3.diff.gz b2/build.log: 81.2% -- replaced with stdout Compressing the 1st log... b1/build.log: 81.7% -- replaced with stdout Sun Sep 14 21:20:10 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_mcaller_unstable_arm64_1757884810 + touch /var/log/reproducible-builds/diffoscope_stamp_mcaller_unstable_arm64_1757884810 + RESULT=0 + systemd-run '--description=diffoscope on mcaller/1.0.3+git20210624.b415090-3 in unstable/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_5-121176 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w --run-session -c jenkins-reproducible-unstable-diffoscope-2046a9eb-78f7-4d6c-959e-e9c9475d3b79 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w/dbd-tmp-QrZi2dq ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w/mcaller_1.0.3+git20210624.b415090-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w/mcaller_1.0.3+git20210624.b415090-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w/mcaller_1.0.3+git20210624.b415090-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w/b1/mcaller_1.0.3+git20210624.b415090-3_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w/b2/mcaller_1.0.3+git20210624.b415090-3_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_5-121176.service; invocation ID: fc0d4a16c3f846eeac0a5403d9855fbf # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w/mcaller_1.0.3+git20210624.b415090-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w/mcaller_1.0.3+git20210624.b415090-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w/mcaller_1.0.3+git20210624.b415090-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w/b1/mcaller_1.0.3+git20210624.b415090-3_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.d8TuSn1w/b2/mcaller_1.0.3+git20210624.b415090-3_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 220ms CPU time consumed: 169ms Memory peak: 17.6M (swap: 0B) _ _ _ __ ___ ___ __ _| | | ___ _ __ | '_ ` _ \ / __/ _` | | |/ _ \ '__| | | | | | | (_| (_| | | | __/ | |_| |_| |_|\___\__,_|_|_|\___|_| Sun Sep 14 21:20:11 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Sun Sep 14 21:20:11 UTC 2025 I: mcaller from unstable built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-09-14 21:20:11] INFO: Starting at 2025-09-14 21:20:11.742332 [2025-09-14 21:20:11] INFO: Generating the pages of 1 package(s) [2025-09-14 21:20:11] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/arm64/mcaller didn't produce a buildlog, even though it has been built. [2025-09-14 21:20:11] CRITICAL: https://tests.reproducible-builds.org/debian/forky/arm64/mcaller didn't produce a buildlog, even though it has been built. [2025-09-14 21:20:11] INFO: Finished at 2025-09-14 21:20:11.961380, took: 0:00:00.219051 Sun Sep 14 21:20:12 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/arm64/mcaller.html Sun Sep 14 21:20:12 UTC 2025 I: Removing signed mcaller_1.0.3+git20210624.b415090-3_arm64.buildinfo.asc files: removed './b1/mcaller_1.0.3+git20210624.b415090-3_arm64.buildinfo.asc' removed './b2/mcaller_1.0.3+git20210624.b415090-3_arm64.buildinfo.asc' 1757884812 arm64 unstable mcaller Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/mcaller_1.0.3+git20210624.b415090-3.rbuild.log: 79.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/mcaller_1.0.3+git20210624.b415090-3.rbuild.log.gz [2025-09-14 21:20:12] INFO: Starting at 2025-09-14 21:20:12.279469 [2025-09-14 21:20:12] INFO: Generating the pages of 1 package(s) [2025-09-14 21:20:12] CRITICAL: https://tests.reproducible-builds.org/debian/forky/arm64/mcaller didn't produce a buildlog, even though it has been built. [2025-09-14 21:20:12] INFO: Finished at 2025-09-14 21:20:12.447975, took: 0:00:00.168509 All cleanup done. Sun Sep 14 21:20:12 UTC 2025 - total duration: 0h 10m 47s. Sun Sep 14 21:20:12 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-ZZblNRM1, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 10min 48.396s CPU time consumed: 2.973s Memory peak: 36.3M (swap: 0B)