Running as unit: rb-build-arm64_5-121677.service; invocation ID: 59fc7ac1595942069ebee2dda8882386 ==================================================================================== Thu Sep 18 19:48:54 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_5) on jenkins, called using "codethink03-arm64 codethink04-arm64" as arguments. Thu Sep 18 19:48:54 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-EHNEWmKr" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Sep 18 19:48:54 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Thu Sep 18 19:48:54 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-wb2FUO' Thu Sep 18 19:48:54 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Thu Sep 18 19:48:54 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-KlIyUy' ok, let's check if shapeit4 is building anywhere yet… ok, shapeit4 is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of shapeit4 in unstable on arm64 on jenkins now. 1st build will be done on codethink03-arm64.debian.net. 2nd build will be done on codethink04-arm64.debian.net. ============================================================================= Thu Sep 18 19:49:17 UTC 2025 I: starting to build shapeit4/unstable/arm64 on jenkins on '2025-09-18 19:48' Thu Sep 18 19:49:17 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_5/121677/console.log 1758224957 arm64 unstable shapeit4 Thu Sep 18 19:49:17 UTC 2025 I: Downloading source for unstable/shapeit4=4.2.2+dfsg-1 --2025-09-18 19:49:17-- http://deb.debian.org/debian/pool/main/s/shapeit4/shapeit4_4.2.2%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2134 (2.1K) [text/prs.lines.tag] Saving to: ‘shapeit4_4.2.2+dfsg-1.dsc’ 0K .. 100% 260M=0s 2025-09-18 19:49:17 (260 MB/s) - ‘shapeit4_4.2.2+dfsg-1.dsc’ saved [2134/2134] --2025-09-18 19:49:17-- http://deb.debian.org/debian/pool/main/s/shapeit4/shapeit4_4.2.2%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2134 (2.1K) [text/prs.lines.tag] Saving to: ‘shapeit4_4.2.2+dfsg-1.dsc’ 0K .. 100% 260M=0s 2025-09-18 19:49:17 (260 MB/s) - ‘shapeit4_4.2.2+dfsg-1.dsc’ saved [2134/2134] Thu Sep 18 19:49:17 UTC 2025 I: shapeit4_4.2.2+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: shapeit4 Binary: shapeit4, shapeit4-example Architecture: any all Version: 4.2.2+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Dylan Aïssi Homepage: https://odelaneau.github.io/shapeit4/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/shapeit4 Vcs-Git: https://salsa.debian.org/med-team/shapeit4.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libboost-iostreams-dev, libboost-program-options-dev, libbz2-dev, libhts-dev, libssl-dev Package-List: shapeit4 deb science optional arch=any shapeit4-example deb doc optional arch=all Checksums-Sha1: 74489c1b97358dbbfa9245812b131d8df69cc742 58962780 shapeit4_4.2.2+dfsg.orig.tar.xz e019b0ec958bd082337abbf437e5a1aea5d92a76 5200 shapeit4_4.2.2+dfsg-1.debian.tar.xz Checksums-Sha256: 0a8c5da94ab21a092a6acb77e795d91a40c5034a2ee80b9ffa679cd95114937c 58962780 shapeit4_4.2.2+dfsg.orig.tar.xz d42b9df3505c3874e9c18d676af83ef315e84afb57dc7036737a2f71af121bc0 5200 shapeit4_4.2.2+dfsg-1.debian.tar.xz Files: f3e35676c663d0ecba185a9b98cd95c5 58962780 shapeit4_4.2.2+dfsg.orig.tar.xz 0e07e040f73ac50205869fe79f473919 5200 shapeit4_4.2.2+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEmjwHvQbeL0FugTpdYS7xYT4FD1QFAmFEidwACgkQYS7xYT4F D1Qb4RAAqTHiJ8+FbSoRqNnKtGk9hQXBr2hehl0lrN6zuc41Jk8wy8Q9mlOS3BSp Ki4oYYNjhTs8gLuttkdo4oRnF6DBeeqw8NTZ77osUkFYVZ7kJzokGvN+px/XKJDK uTAAllhoNIoUsA9iz0ACg4r6kAZJ5v/X5AoZ+Y+CQa5uUBzCFObtCIyj8Qyk7EIT dzWe4taxmUQaHmLSjtkGrk0bS6UiNoQzdqNpNZpRBrneKqyXYxA5Xy7rKfO5MeOE YO0Imv/Gtnvfz/3MXdtHWcwELvQZYmHrPymEqs7+ogElSKTMoOxyzOQ9t/2x6BRh dLZjS7vQmfAhfrMJRXChxUiD+m9cGif6lQSW8iVpnaUywMjgV4hwSysTmxpWiMZF 61wbV4yNu8SiemB36fN2vGbKmM6lvMrfTK5Hs9AP/VVxCPCVpreLfQ8arS624kaH vLr6LfMny44Hg3YtEf0bzJUZ9vc49Mb0DeQbIvEhJXP4xbQ0metnAkA18EH/3e+t VmQe19uJSV3R7UF+mfA7oLS5pDF+Ut21gRmcMwSuTqn4klWKD0PIJFj+aWHGKwPz qBHXc4WUJ2HcKj79h5e+OP6xLZoo4bWmzvf1nq+fTbJg+Oz6uE+KMjmy9r6ms13p jf9/Y1TxKqhrUC6PfV/xYoTtEIAJn+PHgcDmNvjm3+IHOojIATo= =RH/t -----END PGP SIGNATURE----- Thu Sep 18 19:49:17 UTC 2025 I: Checking whether the package is not for us Thu Sep 18 19:49:17 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Thu Sep 18 19:49:17 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Thu Sep 18 19:49:17 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Thu Sep 18 19:49:17 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-L7TNbv' ==================================================================================== Thu Oct 22 02:12:19 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "1 shapeit4 unstable /srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw 4.2.2+dfsg-1" as arguments. Thu Oct 22 02:12:19 UTC 2026 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-6EETq2ze" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Oct 22 02:12:19 UTC 2026 I: Downloading source for unstable/shapeit4=4.2.2+dfsg-1 Reading package lists... NOTICE: 'shapeit4' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/shapeit4.git Please use: git clone https://salsa.debian.org/med-team/shapeit4.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 59.0 MB of source archives. Get:1 http://deb.debian.org/debian unstable/main shapeit4 4.2.2+dfsg-1 (dsc) [2134 B] Get:2 http://deb.debian.org/debian unstable/main shapeit4 4.2.2+dfsg-1 (tar) [59.0 MB] Get:3 http://deb.debian.org/debian unstable/main shapeit4 4.2.2+dfsg-1 (diff) [5200 B] Fetched 59.0 MB in 1s (40.5 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'shapeit4' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/shapeit4.git Please use: git clone https://salsa.debian.org/med-team/shapeit4.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 59.0 MB of source archives. Get:1 http://deb.debian.org/debian unstable/main shapeit4 4.2.2+dfsg-1 (dsc) [2134 B] Get:2 http://deb.debian.org/debian unstable/main shapeit4 4.2.2+dfsg-1 (tar) [59.0 MB] Get:3 http://deb.debian.org/debian unstable/main shapeit4 4.2.2+dfsg-1 (diff) [5200 B] Fetched 59.0 MB in 1s (40.5 MB/s) Download complete and in download only mode ============================================================================= Building shapeit4 in unstable on arm64 on codethink03-arm64 now. Date: Thu Oct 22 03:12:20 BST 2026 Date UTC: Thu Oct 22 02:12:20 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Oct 21 14:12:21 -12 2026 I: pbuilder-time-stamp: 1792635141 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [shapeit4_4.2.2+dfsg-1.dsc] I: copying [./shapeit4_4.2.2+dfsg.orig.tar.xz] I: copying [./shapeit4_4.2.2+dfsg-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./shapeit4_4.2.2+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting shapeit4 in shapeit4-4.2.2+dfsg dpkg-source: info: unpacking shapeit4_4.2.2+dfsg.orig.tar.xz dpkg-source: info: unpacking shapeit4_4.2.2+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_shared_libs.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2528896/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='d1f40726304146d8b1ac2c351bad051d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2528896' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw/pbuilderrc_gfRJ --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw/b1 --logfile b1/build.log shapeit4_4.2.2+dfsg-1.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2528896/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libboost-iostreams-dev, libboost-program-options-dev, libbz2-dev, libhts-dev, libssl-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libssl-dev; however: Package libssl-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gcc-14-base{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgcc-14-dev{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu-dev{a} libicu76{a} libidn2-0{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libstdc++-14-dev{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2-16{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix wget 0 packages upgraded, 107 newly installed, 0 to remove and 0 not upgraded. Need to get 68.4 MB of archives. After unpacking 423 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41.1-3 [98.1 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 comerr-dev arm64 2.1-1.47.2-3+b3 [56.9 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.26 [91.8 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-5 [540 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 24 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.16-2 [100 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.26 [939 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 gcc-14-base arm64 14.3.0-8 [52.1 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libicu76 arm64 76.1-4 [9524 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 icu-devtools arm64 76.1-4 [200 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 38 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libgssrpc4t64 arm64 1.21.3-5 [57.2 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libkadm5clnt-mit12 arm64 1.21.3-5 [41.1 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libkdb5-10t64 arm64 1.21.3-5 [41.3 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libkadm5srv-mit12 arm64 1.21.3-5 [53.0 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 krb5-multidev arm64 1.21.3-5 [126 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libgcc-14-dev arm64 14.3.0-8 [2364 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libstdc++-14-dev arm64 14.3.0-8 [2567 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libboost1.83-dev arm64 1.83.0-5 [10.6 MB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libboost-regex1.83.0 arm64 1.83.0-5 [314 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libicu-dev arm64 76.1-4 [10.6 MB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libboost-regex1.83-dev arm64 1.83.0-5 [335 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libboost-iostreams1.83-dev arm64 1.83.0-5 [261 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libboost-iostreams-dev arm64 1.83.0.2+b2 [3568 B] Get: 53 http://deb.debian.org/debian unstable/main arm64 libboost-program-options1.83.0 arm64 1.83.0-5 [331 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libboost-program-options1.83-dev arm64 1.83.0-5 [369 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libboost-program-options-dev arm64 1.83.0.2+b2 [3600 B] Get: 56 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libbrotli-dev arm64 1.1.0-2+b7 [308 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.10-2 [1395 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.11.0-1 [66.7 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.15.1-1 [122 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.15.1-1 [18.6 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.16.0-1 [382 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 libunbound8 arm64 1.23.1-1 [561 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 libgnutls-dane0t64 arm64 3.8.10-2 [456 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libgnutls-openssl27t64 arm64 3.8.10-2 [456 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libidn2-dev arm64 2.3.8-4 [102 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libp11-kit-dev arm64 0.25.5-3 [208 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 libtasn1-6-dev arm64 4.20.0-2 [96.7 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-5 [329 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-5 [621 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 nettle-dev arm64 3.10.1-1 [1325 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libgnutls28-dev arm64 3.8.10-2 [1438 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libkrb5-dev arm64 1.21.3-5 [16.1 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libldap-dev arm64 2.6.10+dfsg-1 [305 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libnghttp2-dev arm64 1.64.0-1.1+b1 [112 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libnghttp3-dev arm64 1.11.0-1 [94.6 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.15.1-1 [24.5 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libngtcp2-dev arm64 1.15.1-1 [179 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-3 [173 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libssl-dev arm64 3.5.3-1 [3377 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libzstd-dev arm64 1.5.7+dfsg-1.1 [335 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 libcurl4-gnutls-dev arm64 8.16.0-1 [525 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 libdeflate-dev arm64 1.23-2 [51.3 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libhtscodecs2 arm64 1.6.1-2 [74.7 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libhts3t64 arm64 1.22.1+ds2-1 [434 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 liblzma-dev arm64 5.8.1-1.1 [344 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libhts-dev arm64 1.22.1+ds2-1 [1684 kB] Fetched 68.4 MB in 0s (165 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../000-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../001-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. 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Preparing to unpack .../008-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../009-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../010-m4_1.4.20-1_arm64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../011-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../012-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../013-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../014-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../015-libcom-err2_1.47.2-3+b3_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2-3+b3) ... Selecting previously unselected package comerr-dev:arm64. Preparing to unpack .../016-comerr-dev_2.1-1.47.2-3+b3_arm64.deb ... Unpacking comerr-dev:arm64 (2.1-1.47.2-3+b3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../017-libdebhelper-perl_13.26_all.deb ... Unpacking libdebhelper-perl (13.26) ... Selecting previously unselected package libtool. Preparing to unpack .../018-libtool_2.5.4-5_all.deb ... Unpacking libtool (2.5.4-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../019-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../020-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../021-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../022-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../023-libelf1t64_0.193-3_arm64.deb ... Unpacking libelf1t64:arm64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../024-dwz_0.16-2_arm64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../025-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2-16:arm64. Preparing to unpack .../026-libxml2-16_2.14.5+dfsg-0.2_arm64.deb ... Unpacking libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Selecting previously unselected package gettext. Preparing to unpack .../027-gettext_0.23.1-2+b1_arm64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../028-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../029-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../030-debhelper_13.26_all.deb ... Unpacking debhelper (13.26) ... Selecting previously unselected package gcc-14-base:arm64. Preparing to unpack .../031-gcc-14-base_14.3.0-8_arm64.deb ... Unpacking gcc-14-base:arm64 (14.3.0-8) ... Selecting previously unselected package libicu76:arm64. Preparing to unpack .../032-libicu76_76.1-4_arm64.deb ... Unpacking libicu76:arm64 (76.1-4) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../033-icu-devtools_76.1-4_arm64.deb ... Unpacking icu-devtools (76.1-4) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../034-libkrb5support0_1.21.3-5_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-5) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../035-libk5crypto3_1.21.3-5_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../036-libkeyutils1_1.6.3-6_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../037-libkrb5-3_1.21.3-5_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../038-libgssapi-krb5-2_1.21.3-5_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-5) ... Selecting previously unselected package libgssrpc4t64:arm64. Preparing to unpack .../039-libgssrpc4t64_1.21.3-5_arm64.deb ... Unpacking libgssrpc4t64:arm64 (1.21.3-5) ... Selecting previously unselected package libkadm5clnt-mit12:arm64. Preparing to unpack .../040-libkadm5clnt-mit12_1.21.3-5_arm64.deb ... Unpacking libkadm5clnt-mit12:arm64 (1.21.3-5) ... Selecting previously unselected package libkdb5-10t64:arm64. Preparing to unpack .../041-libkdb5-10t64_1.21.3-5_arm64.deb ... Unpacking libkdb5-10t64:arm64 (1.21.3-5) ... Selecting previously unselected package libkadm5srv-mit12:arm64. Preparing to unpack .../042-libkadm5srv-mit12_1.21.3-5_arm64.deb ... Unpacking libkadm5srv-mit12:arm64 (1.21.3-5) ... Selecting previously unselected package krb5-multidev:arm64. Preparing to unpack .../043-krb5-multidev_1.21.3-5_arm64.deb ... Unpacking krb5-multidev:arm64 (1.21.3-5) ... Selecting previously unselected package libgcc-14-dev:arm64. Preparing to unpack .../044-libgcc-14-dev_14.3.0-8_arm64.deb ... Unpacking libgcc-14-dev:arm64 (14.3.0-8) ... Selecting previously unselected package libstdc++-14-dev:arm64. Preparing to unpack .../045-libstdc++-14-dev_14.3.0-8_arm64.deb ... Unpacking libstdc++-14-dev:arm64 (14.3.0-8) ... Selecting previously unselected package libboost1.83-dev:arm64. Preparing to unpack .../046-libboost1.83-dev_1.83.0-5_arm64.deb ... Unpacking libboost1.83-dev:arm64 (1.83.0-5) ... Selecting previously unselected package libboost-regex1.83.0:arm64. Preparing to unpack .../047-libboost-regex1.83.0_1.83.0-5_arm64.deb ... Unpacking libboost-regex1.83.0:arm64 (1.83.0-5) ... Selecting previously unselected package libicu-dev:arm64. Preparing to unpack .../048-libicu-dev_76.1-4_arm64.deb ... Unpacking libicu-dev:arm64 (76.1-4) ... Selecting previously unselected package libboost-regex1.83-dev:arm64. Preparing to unpack .../049-libboost-regex1.83-dev_1.83.0-5_arm64.deb ... Unpacking libboost-regex1.83-dev:arm64 (1.83.0-5) ... Selecting previously unselected package libboost-iostreams1.83-dev:arm64. Preparing to unpack .../050-libboost-iostreams1.83-dev_1.83.0-5_arm64.deb ... Unpacking libboost-iostreams1.83-dev:arm64 (1.83.0-5) ... Selecting previously unselected package libboost-iostreams-dev:arm64. Preparing to unpack .../051-libboost-iostreams-dev_1.83.0.2+b2_arm64.deb ... Unpacking libboost-iostreams-dev:arm64 (1.83.0.2+b2) ... Selecting previously unselected package libboost-program-options1.83.0:arm64. Preparing to unpack .../052-libboost-program-options1.83.0_1.83.0-5_arm64.deb ... Unpacking libboost-program-options1.83.0:arm64 (1.83.0-5) ... Selecting previously unselected package libboost-program-options1.83-dev:arm64. Preparing to unpack .../053-libboost-program-options1.83-dev_1.83.0-5_arm64.deb ... Unpacking libboost-program-options1.83-dev:arm64 (1.83.0-5) ... Selecting previously unselected package libboost-program-options-dev:arm64. Preparing to unpack .../054-libboost-program-options-dev_1.83.0.2+b2_arm64.deb ... Unpacking libboost-program-options-dev:arm64 (1.83.0.2+b2) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../055-libbrotli1_1.1.0-2+b7_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b7) ... Selecting previously unselected package libbrotli-dev:arm64. Preparing to unpack .../056-libbrotli-dev_1.1.0-2+b7_arm64.deb ... Unpacking libbrotli-dev:arm64 (1.1.0-2+b7) ... Selecting previously unselected package libbz2-dev:arm64. Preparing to unpack .../057-libbz2-dev_1.0.8-6_arm64.deb ... Unpacking libbz2-dev:arm64 (1.0.8-6) ... Selecting previously unselected package libidn2-0:arm64. Preparing to unpack .../058-libidn2-0_2.3.8-4_arm64.deb ... Unpacking libidn2-0:arm64 (2.3.8-4) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../059-libffi8_3.5.2-2_arm64.deb ... Unpacking libffi8:arm64 (3.5.2-2) ... Selecting previously unselected package libp11-kit0:arm64. Preparing to unpack .../060-libp11-kit0_0.25.5-3_arm64.deb ... Unpacking libp11-kit0:arm64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:arm64. Preparing to unpack .../061-libtasn1-6_4.20.0-2_arm64.deb ... Unpacking libtasn1-6:arm64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:arm64. Preparing to unpack .../062-libgnutls30t64_3.8.10-2_arm64.deb ... Unpacking libgnutls30t64:arm64 (3.8.10-2) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../063-libsasl2-modules-db_2.1.28+dfsg1-9_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../064-libsasl2-2_2.1.28+dfsg1-9_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libldap2:arm64. Preparing to unpack .../065-libldap2_2.6.10+dfsg-1_arm64.deb ... Unpacking libldap2:arm64 (2.6.10+dfsg-1) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../066-libnghttp2-14_1.64.0-1.1+b1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.64.0-1.1+b1) ... Selecting previously unselected package libnghttp3-9:arm64. Preparing to unpack .../067-libnghttp3-9_1.11.0-1_arm64.deb ... Unpacking libnghttp3-9:arm64 (1.11.0-1) ... Selecting previously unselected package libngtcp2-16:arm64. Preparing to unpack .../068-libngtcp2-16_1.15.1-1_arm64.deb ... Unpacking libngtcp2-16:arm64 (1.15.1-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:arm64. Preparing to unpack .../069-libngtcp2-crypto-gnutls8_1.15.1-1_arm64.deb ... Unpacking libngtcp2-crypto-gnutls8:arm64 (1.15.1-1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../070-libpsl5t64_0.21.2-1.1+b1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../071-librtmp1_2.4+20151223.gitfa8646d.1-3_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-3) ... Selecting previously unselected package libssh2-1t64:arm64. Preparing to unpack .../072-libssh2-1t64_1.11.1-1_arm64.deb ... Unpacking libssh2-1t64:arm64 (1.11.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:arm64. Preparing to unpack .../073-libcurl3t64-gnutls_8.16.0-1_arm64.deb ... Unpacking libcurl3t64-gnutls:arm64 (8.16.0-1) ... Selecting previously unselected package libevent-2.1-7t64:arm64. Preparing to unpack .../074-libevent-2.1-7t64_2.1.12-stable-10+b1_arm64.deb ... Unpacking libevent-2.1-7t64:arm64 (2.1.12-stable-10+b1) ... Selecting previously unselected package libunbound8:arm64. Preparing to unpack .../075-libunbound8_1.23.1-1_arm64.deb ... Unpacking libunbound8:arm64 (1.23.1-1) ... Selecting previously unselected package libgnutls-dane0t64:arm64. Preparing to unpack .../076-libgnutls-dane0t64_3.8.10-2_arm64.deb ... 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Setting up libbz2-dev:arm64 (1.0.8-6) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libboost1.83-dev:arm64 (1.83.0-5) ... Setting up gettext (0.23.1-2+b1) ... Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-5) ... Setting up nettle-dev:arm64 (3.10.1-1) ... Setting up libtool (2.5.4-5) ... Setting up libboost-program-options1.83-dev:arm64 (1.83.0-5) ... Setting up libidn2-0:arm64 (2.3.8-4) ... Setting up libngtcp2-dev:arm64 (1.15.1-1) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libboost-program-options-dev:arm64 (1.83.0.2+b2) ... Setting up libldap-dev:arm64 (2.6.10+dfsg-1) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up icu-devtools (76.1-4) ... Setting up libssh2-1-dev:arm64 (1.11.1-1) ... Setting up libidn2-dev:arm64 (2.3.8-4) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libicu-dev:arm64 (76.1-4) ... Setting up libp11-kit-dev:arm64 (0.25.5-3) ... Setting up libgnutls30t64:arm64 (3.8.10-2) ... Setting up libgnutls-openssl27t64:arm64 (3.8.10-2) ... Setting up libnghttp2-dev:arm64 (1.64.0-1.1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpsl-dev:arm64 (0.21.2-1.1+b1) ... Setting up libgnutls-dane0t64:arm64 (3.8.10-2) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libgssrpc4t64:arm64 (1.21.3-5) ... Setting up libboost-regex1.83-dev:arm64 (1.83.0-5) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.15.1-1) ... Setting up libkadm5clnt-mit12:arm64 (1.21.3-5) ... Setting up libgnutls28-dev:arm64 (3.8.10-2) ... Setting up libkdb5-10t64:arm64 (1.21.3-5) ... Setting up libboost-iostreams1.83-dev:arm64 (1.83.0-5) ... Setting up libcurl3t64-gnutls:arm64 (8.16.0-1) ... Setting up debhelper (13.26) ... Setting up libngtcp2-crypto-gnutls-dev:arm64 (1.15.1-1) ... Setting up libboost-iostreams-dev:arm64 (1.83.0.2+b2) ... Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libkadm5srv-mit12:arm64 (1.21.3-5) ... Setting up libhts3t64:arm64 (1.22.1+ds2-1) ... Setting up krb5-multidev:arm64 (1.21.3-5) ... Setting up libkrb5-dev:arm64 (1.21.3-5) ... Setting up libcurl4-gnutls-dev:arm64 (8.16.0-1) ... Setting up libhts-dev:arm64 (1.22.1+ds2-1) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/shapeit4-4.2.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../shapeit4_4.2.2+dfsg-1_source.changes dpkg-buildpackage: info: source package shapeit4 dpkg-buildpackage: info: source version 4.2.2+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Dylan Aïssi dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/shapeit4-4.2.2+dfsg' rm -f obj/*.o bin/shapeit4.2 make[1]: Leaving directory '/build/reproducible-path/shapeit4-4.2.2+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/shapeit4-4.2.2+dfsg' g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/phaser/phaser_parameters.cpp -o obj/phaser_parameters.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/phaser/phaser_management.cpp -o obj/phaser_management.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/phaser/phaser_initialise.cpp -o obj/phaser_initialise.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/phaser/phaser_finalise.cpp -o obj/phaser_finalise.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/phaser/phaser_algorithm.cpp -o obj/phaser_algorithm.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/objects/variant.cpp -o obj/variant.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/objects/hmm_parameters.cpp -o obj/hmm_parameters.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/objects/genotype/genotype_sweep.cpp -o obj/genotype_sweep.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/objects/genotype/genotype_prune.cpp -o obj/genotype_prune.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/objects/genotype/genotype_mask.cpp -o obj/genotype_mask.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/objects/genotype/genotype_managment.cpp -o obj/genotype_managment.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/objects/genotype/genotype_build.cpp -o obj/genotype_build.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/objects/compute_job.cpp -o obj/compute_job.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/modules/pbwt_solver.cpp -o obj/pbwt_solver.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/modules/builder.cpp -o obj/builder.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/models/haplotype_segment_single.cpp -o obj/haplotype_segment_single.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/models/haplotype_segment_double.cpp -o obj/haplotype_segment_double.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/main.cpp -o obj/main.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/io/haplotype_writer.cpp -o obj/haplotype_writer.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/io/graph_writer.cpp -o obj/graph_writer.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/io/gmap_reader.cpp -o obj/gmap_reader.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/io/genotype_reader2.cpp -o obj/genotype_reader2.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/io/genotype_reader1.cpp -o obj/genotype_reader1.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/containers/variant_map.cpp -o obj/variant_map.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/containers/haplotype_set.cpp -o obj/haplotype_set.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/containers/genotype_set.cpp -o obj/genotype_set.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/containers/bitmatrix.cpp -o obj/bitmatrix.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wl,-z,relro -Wl,-z,now -O3 obj/phaser_parameters.o obj/phaser_management.o obj/phaser_initialise.o obj/phaser_finalise.o obj/phaser_algorithm.o obj/variant.o obj/hmm_parameters.o obj/genotype_sweep.o obj/genotype_prune.o obj/genotype_mask.o obj/genotype_managment.o obj/genotype_build.o obj/compute_job.o obj/pbwt_solver.o obj/builder.o obj/haplotype_segment_single.o obj/haplotype_segment_double.o obj/main.o obj/haplotype_writer.o obj/graph_writer.o obj/gmap_reader.o obj/genotype_reader2.o obj/genotype_reader1.o obj/variant_map.o obj/haplotype_set.o obj/genotype_set.o obj/bitmatrix.o -lhts -lboost_iostreams -lboost_program_options -o bin/shapeit4.2 -lz -lbz2 -lm -lpthread -llzma -lcurl -lssl -lcrypto make[1]: Leaving directory '/build/reproducible-path/shapeit4-4.2.2+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'shapeit4' in '../shapeit4_4.2.2+dfsg-1_arm64.deb'. dpkg-deb: building package 'shapeit4-example' in '../shapeit4-example_4.2.2+dfsg-1_all.deb'. dpkg-deb: building package 'shapeit4-dbgsym' in '../shapeit4-dbgsym_4.2.2+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../shapeit4_4.2.2+dfsg-1_arm64.buildinfo dpkg-genchanges --build=binary -O../shapeit4_4.2.2+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2528896 and its subdirectories I: Current time: Wed Oct 21 14:13:20 -12 2026 I: pbuilder-time-stamp: 1792635200 Thu Oct 22 02:13:20 UTC 2026 I: Signing ./b1/shapeit4_4.2.2+dfsg-1_arm64.buildinfo as shapeit4_4.2.2+dfsg-1_arm64.buildinfo.asc Thu Oct 22 02:13:20 UTC 2026 I: Signed ./b1/shapeit4_4.2.2+dfsg-1_arm64.buildinfo as ./b1/shapeit4_4.2.2+dfsg-1_arm64.buildinfo.asc Thu Oct 22 02:13:20 UTC 2026 - build #1 for shapeit4/unstable/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Thu Oct 22 02:13:20 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-6EETq2ze, removing. /srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Sep 18 19:50 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 18 19:49 b2 -rw------- 1 jenkins jenkins 3278 Sep 18 19:49 rbuildlog.V0OvIVb -rw-rw-r-- 1 jenkins jenkins 2134 Sep 17 2021 shapeit4_4.2.2+dfsg-1.dsc /srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw/b1: total 112872 -rw-r--r-- 1 jenkins jenkins 57741 Sep 18 19:50 build.log -rw-r--r-- 1 jenkins jenkins 3994088 Sep 18 19:50 shapeit4-dbgsym_4.2.2+dfsg-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 52265168 Sep 18 19:50 shapeit4-example_4.2.2+dfsg-1_all.deb -rw-r--r-- 1 jenkins jenkins 5200 Sep 18 19:50 shapeit4_4.2.2+dfsg-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2134 Sep 18 19:50 shapeit4_4.2.2+dfsg-1.dsc -rw-r--r-- 1 jenkins jenkins 7743 Sep 18 19:50 shapeit4_4.2.2+dfsg-1_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 8625 Sep 18 19:50 shapeit4_4.2.2+dfsg-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1843 Sep 18 19:50 shapeit4_4.2.2+dfsg-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 179368 Sep 18 19:50 shapeit4_4.2.2+dfsg-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 1559 Sep 18 19:50 shapeit4_4.2.2+dfsg-1_source.changes -rw-r--r-- 1 jenkins jenkins 58962780 Sep 18 19:50 shapeit4_4.2.2+dfsg.orig.tar.xz /srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw/b2: total 0 Thu Sep 18 19:50:27 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Oct 21 14:12:21 -12 2026 I: pbuilder-time-stamp: 1792635141 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [shapeit4_4.2.2+dfsg-1.dsc] I: copying [./shapeit4_4.2.2+dfsg.orig.tar.xz] I: copying [./shapeit4_4.2.2+dfsg-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./shapeit4_4.2.2+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting shapeit4 in shapeit4-4.2.2+dfsg dpkg-source: info: unpacking shapeit4_4.2.2+dfsg.orig.tar.xz dpkg-source: info: unpacking shapeit4_4.2.2+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_shared_libs.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2528896/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='d1f40726304146d8b1ac2c351bad051d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2528896' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw/pbuilderrc_gfRJ --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw/b1 --logfile b1/build.log shapeit4_4.2.2+dfsg-1.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2528896/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libboost-iostreams-dev, libboost-program-options-dev, libbz2-dev, libhts-dev, libssl-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libssl-dev; however: Package libssl-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gcc-14-base{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgcc-14-dev{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu-dev{a} libicu76{a} libidn2-0{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libstdc++-14-dev{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2-16{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix wget 0 packages upgraded, 107 newly installed, 0 to remove and 0 not upgraded. Need to get 68.4 MB of archives. After unpacking 423 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41.1-3 [98.1 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 comerr-dev arm64 2.1-1.47.2-3+b3 [56.9 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.26 [91.8 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-5 [540 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 24 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.16-2 [100 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.26 [939 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 gcc-14-base arm64 14.3.0-8 [52.1 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libicu76 arm64 76.1-4 [9524 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 icu-devtools arm64 76.1-4 [200 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 38 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libgssrpc4t64 arm64 1.21.3-5 [57.2 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libkadm5clnt-mit12 arm64 1.21.3-5 [41.1 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libkdb5-10t64 arm64 1.21.3-5 [41.3 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libkadm5srv-mit12 arm64 1.21.3-5 [53.0 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 krb5-multidev arm64 1.21.3-5 [126 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libgcc-14-dev arm64 14.3.0-8 [2364 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libstdc++-14-dev arm64 14.3.0-8 [2567 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libboost1.83-dev arm64 1.83.0-5 [10.6 MB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libboost-regex1.83.0 arm64 1.83.0-5 [314 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libicu-dev arm64 76.1-4 [10.6 MB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libboost-regex1.83-dev arm64 1.83.0-5 [335 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libboost-iostreams1.83-dev arm64 1.83.0-5 [261 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libboost-iostreams-dev arm64 1.83.0.2+b2 [3568 B] Get: 53 http://deb.debian.org/debian unstable/main arm64 libboost-program-options1.83.0 arm64 1.83.0-5 [331 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libboost-program-options1.83-dev arm64 1.83.0-5 [369 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libboost-program-options-dev arm64 1.83.0.2+b2 [3600 B] Get: 56 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libbrotli-dev arm64 1.1.0-2+b7 [308 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.10-2 [1395 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.11.0-1 [66.7 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.15.1-1 [122 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.15.1-1 [18.6 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.16.0-1 [382 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 libunbound8 arm64 1.23.1-1 [561 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 libgnutls-dane0t64 arm64 3.8.10-2 [456 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libgnutls-openssl27t64 arm64 3.8.10-2 [456 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libidn2-dev arm64 2.3.8-4 [102 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libp11-kit-dev arm64 0.25.5-3 [208 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 libtasn1-6-dev arm64 4.20.0-2 [96.7 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-5 [329 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-5 [621 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 nettle-dev arm64 3.10.1-1 [1325 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libgnutls28-dev arm64 3.8.10-2 [1438 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libkrb5-dev arm64 1.21.3-5 [16.1 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libldap-dev arm64 2.6.10+dfsg-1 [305 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libnghttp2-dev arm64 1.64.0-1.1+b1 [112 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libnghttp3-dev arm64 1.11.0-1 [94.6 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.15.1-1 [24.5 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libngtcp2-dev arm64 1.15.1-1 [179 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-3 [173 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libssl-dev arm64 3.5.3-1 [3377 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libzstd-dev arm64 1.5.7+dfsg-1.1 [335 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 libcurl4-gnutls-dev arm64 8.16.0-1 [525 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 libdeflate-dev arm64 1.23-2 [51.3 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libhtscodecs2 arm64 1.6.1-2 [74.7 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libhts3t64 arm64 1.22.1+ds2-1 [434 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 liblzma-dev arm64 5.8.1-1.1 [344 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libhts-dev arm64 1.22.1+ds2-1 [1684 kB] Fetched 68.4 MB in 0s (165 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../000-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../001-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../002-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../003-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../004-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../005-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../006-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../007-bsdextrautils_2.41.1-3_arm64.deb ... Unpacking bsdextrautils (2.41.1-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../008-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../009-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../010-m4_1.4.20-1_arm64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../011-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../012-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../013-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../014-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../015-libcom-err2_1.47.2-3+b3_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2-3+b3) ... Selecting previously unselected package comerr-dev:arm64. Preparing to unpack .../016-comerr-dev_2.1-1.47.2-3+b3_arm64.deb ... Unpacking comerr-dev:arm64 (2.1-1.47.2-3+b3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../017-libdebhelper-perl_13.26_all.deb ... Unpacking libdebhelper-perl (13.26) ... Selecting previously unselected package libtool. Preparing to unpack .../018-libtool_2.5.4-5_all.deb ... Unpacking libtool (2.5.4-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../019-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../020-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../021-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../022-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../023-libelf1t64_0.193-3_arm64.deb ... Unpacking libelf1t64:arm64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../024-dwz_0.16-2_arm64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../025-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2-16:arm64. Preparing to unpack .../026-libxml2-16_2.14.5+dfsg-0.2_arm64.deb ... Unpacking libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Selecting previously unselected package gettext. Preparing to unpack .../027-gettext_0.23.1-2+b1_arm64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../028-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../029-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../030-debhelper_13.26_all.deb ... Unpacking debhelper (13.26) ... Selecting previously unselected package gcc-14-base:arm64. Preparing to unpack .../031-gcc-14-base_14.3.0-8_arm64.deb ... Unpacking gcc-14-base:arm64 (14.3.0-8) ... Selecting previously unselected package libicu76:arm64. Preparing to unpack .../032-libicu76_76.1-4_arm64.deb ... Unpacking libicu76:arm64 (76.1-4) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../033-icu-devtools_76.1-4_arm64.deb ... Unpacking icu-devtools (76.1-4) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../034-libkrb5support0_1.21.3-5_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-5) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../035-libk5crypto3_1.21.3-5_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../036-libkeyutils1_1.6.3-6_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../037-libkrb5-3_1.21.3-5_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../038-libgssapi-krb5-2_1.21.3-5_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-5) ... Selecting previously unselected package libgssrpc4t64:arm64. Preparing to unpack .../039-libgssrpc4t64_1.21.3-5_arm64.deb ... Unpacking libgssrpc4t64:arm64 (1.21.3-5) ... Selecting previously unselected package libkadm5clnt-mit12:arm64. Preparing to unpack .../040-libkadm5clnt-mit12_1.21.3-5_arm64.deb ... Unpacking libkadm5clnt-mit12:arm64 (1.21.3-5) ... Selecting previously unselected package libkdb5-10t64:arm64. Preparing to unpack .../041-libkdb5-10t64_1.21.3-5_arm64.deb ... Unpacking libkdb5-10t64:arm64 (1.21.3-5) ... Selecting previously unselected package libkadm5srv-mit12:arm64. Preparing to unpack .../042-libkadm5srv-mit12_1.21.3-5_arm64.deb ... Unpacking libkadm5srv-mit12:arm64 (1.21.3-5) ... Selecting previously unselected package krb5-multidev:arm64. Preparing to unpack .../043-krb5-multidev_1.21.3-5_arm64.deb ... Unpacking krb5-multidev:arm64 (1.21.3-5) ... Selecting previously unselected package libgcc-14-dev:arm64. Preparing to unpack .../044-libgcc-14-dev_14.3.0-8_arm64.deb ... Unpacking libgcc-14-dev:arm64 (14.3.0-8) ... Selecting previously unselected package libstdc++-14-dev:arm64. Preparing to unpack .../045-libstdc++-14-dev_14.3.0-8_arm64.deb ... Unpacking libstdc++-14-dev:arm64 (14.3.0-8) ... Selecting previously unselected package libboost1.83-dev:arm64. Preparing to unpack .../046-libboost1.83-dev_1.83.0-5_arm64.deb ... Unpacking libboost1.83-dev:arm64 (1.83.0-5) ... Selecting previously unselected package libboost-regex1.83.0:arm64. Preparing to unpack .../047-libboost-regex1.83.0_1.83.0-5_arm64.deb ... Unpacking libboost-regex1.83.0:arm64 (1.83.0-5) ... Selecting previously unselected package libicu-dev:arm64. Preparing to unpack .../048-libicu-dev_76.1-4_arm64.deb ... Unpacking libicu-dev:arm64 (76.1-4) ... Selecting previously unselected package libboost-regex1.83-dev:arm64. Preparing to unpack .../049-libboost-regex1.83-dev_1.83.0-5_arm64.deb ... Unpacking libboost-regex1.83-dev:arm64 (1.83.0-5) ... Selecting previously unselected package libboost-iostreams1.83-dev:arm64. Preparing to unpack .../050-libboost-iostreams1.83-dev_1.83.0-5_arm64.deb ... Unpacking libboost-iostreams1.83-dev:arm64 (1.83.0-5) ... Selecting previously unselected package libboost-iostreams-dev:arm64. Preparing to unpack .../051-libboost-iostreams-dev_1.83.0.2+b2_arm64.deb ... Unpacking libboost-iostreams-dev:arm64 (1.83.0.2+b2) ... Selecting previously unselected package libboost-program-options1.83.0:arm64. Preparing to unpack .../052-libboost-program-options1.83.0_1.83.0-5_arm64.deb ... Unpacking libboost-program-options1.83.0:arm64 (1.83.0-5) ... Selecting previously unselected package libboost-program-options1.83-dev:arm64. Preparing to unpack .../053-libboost-program-options1.83-dev_1.83.0-5_arm64.deb ... Unpacking libboost-program-options1.83-dev:arm64 (1.83.0-5) ... Selecting previously unselected package libboost-program-options-dev:arm64. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/shapeit4-4.2.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../shapeit4_4.2.2+dfsg-1_source.changes dpkg-buildpackage: info: source package shapeit4 dpkg-buildpackage: info: source version 4.2.2+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Dylan Aïssi dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/shapeit4-4.2.2+dfsg' rm -f obj/*.o bin/shapeit4.2 make[1]: Leaving directory '/build/reproducible-path/shapeit4-4.2.2+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/shapeit4-4.2.2+dfsg' g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/phaser/phaser_parameters.cpp -o obj/phaser_parameters.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/phaser/phaser_management.cpp -o obj/phaser_management.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/phaser/phaser_initialise.cpp -o obj/phaser_initialise.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/phaser/phaser_finalise.cpp -o obj/phaser_finalise.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/phaser/phaser_algorithm.cpp -o obj/phaser_algorithm.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/objects/variant.cpp -o obj/variant.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/objects/hmm_parameters.cpp -o obj/hmm_parameters.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/objects/genotype/genotype_sweep.cpp -o obj/genotype_sweep.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/objects/genotype/genotype_prune.cpp -o obj/genotype_prune.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/objects/genotype/genotype_mask.cpp -o obj/genotype_mask.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/objects/genotype/genotype_managment.cpp -o obj/genotype_managment.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/objects/genotype/genotype_build.cpp -o obj/genotype_build.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/objects/compute_job.cpp -o obj/compute_job.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/modules/pbwt_solver.cpp -o obj/pbwt_solver.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/modules/builder.cpp -o obj/builder.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/models/haplotype_segment_single.cpp -o obj/haplotype_segment_single.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/models/haplotype_segment_double.cpp -o obj/haplotype_segment_double.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/main.cpp -o obj/main.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/io/haplotype_writer.cpp -o obj/haplotype_writer.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/io/graph_writer.cpp -o obj/graph_writer.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/io/gmap_reader.cpp -o obj/gmap_reader.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/io/genotype_reader2.cpp -o obj/genotype_reader2.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/io/genotype_reader1.cpp -o obj/genotype_reader1.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/containers/variant_map.cpp -o obj/variant_map.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/containers/haplotype_set.cpp -o obj/haplotype_set.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/containers/genotype_set.cpp -o obj/genotype_set.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/containers/bitmatrix.cpp -o obj/bitmatrix.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wl,-z,relro -Wl,-z,now -O3 obj/phaser_parameters.o obj/phaser_management.o obj/phaser_initialise.o obj/phaser_finalise.o obj/phaser_algorithm.o obj/variant.o obj/hmm_parameters.o obj/genotype_sweep.o obj/genotype_prune.o obj/genotype_mask.o obj/genotype_managment.o obj/genotype_build.o obj/compute_job.o obj/pbwt_solver.o obj/builder.o obj/haplotype_segment_single.o obj/haplotype_segment_double.o obj/main.o obj/haplotype_writer.o obj/graph_writer.o obj/gmap_reader.o obj/genotype_reader2.o obj/genotype_reader1.o obj/variant_map.o obj/haplotype_set.o obj/genotype_set.o obj/bitmatrix.o -lhts -lboost_iostreams -lboost_program_options -o bin/shapeit4.2 -lz -lbz2 -lm -lpthread -llzma -lcurl -lssl -lcrypto make[1]: Leaving directory '/build/reproducible-path/shapeit4-4.2.2+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'shapeit4' in '../shapeit4_4.2.2+dfsg-1_arm64.deb'. dpkg-deb: building package 'shapeit4-example' in '../shapeit4-example_4.2.2+dfsg-1_all.deb'. dpkg-deb: building package 'shapeit4-dbgsym' in '../shapeit4-dbgsym_4.2.2+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../shapeit4_4.2.2+dfsg-1_arm64.buildinfo dpkg-genchanges --build=binary -O../shapeit4_4.2.2+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2528896 and its subdirectories I: Current time: Wed Oct 21 14:13:20 -12 2026 I: pbuilder-time-stamp: 1792635200 Thu Sep 18 19:50:28 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Thu Sep 18 19:50:28 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Thu Sep 18 19:50:28 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Thu Sep 18 19:50:28 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-G5EYVs' ==================================================================================== Thu Sep 18 19:50:29 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "2 shapeit4 unstable /srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw 4.2.2+dfsg-1" as arguments. Thu Sep 18 19:50:29 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-CxlAomc1" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Sep 18 19:50:29 UTC 2025 I: Downloading source for unstable/shapeit4=4.2.2+dfsg-1 Reading package lists... NOTICE: 'shapeit4' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/shapeit4.git Please use: git clone https://salsa.debian.org/med-team/shapeit4.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 59.0 MB of source archives. Get:1 http://deb.debian.org/debian unstable/main shapeit4 4.2.2+dfsg-1 (dsc) [2134 B] Get:2 http://deb.debian.org/debian unstable/main shapeit4 4.2.2+dfsg-1 (tar) [59.0 MB] Get:3 http://deb.debian.org/debian unstable/main shapeit4 4.2.2+dfsg-1 (diff) [5200 B] Fetched 59.0 MB in 0s (198 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'shapeit4' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/shapeit4.git Please use: git clone https://salsa.debian.org/med-team/shapeit4.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 59.0 MB of source archives. Get:1 http://deb.debian.org/debian unstable/main shapeit4 4.2.2+dfsg-1 (dsc) [2134 B] Get:2 http://deb.debian.org/debian unstable/main shapeit4 4.2.2+dfsg-1 (tar) [59.0 MB] Get:3 http://deb.debian.org/debian unstable/main shapeit4 4.2.2+dfsg-1 (diff) [5200 B] Fetched 59.0 MB in 0s (198 MB/s) Download complete and in download only mode ============================================================================= Re-Building shapeit4 in unstable on arm64 on codethink04-arm64 now. Date: Thu Sep 18 20:50:29 BST 2025 Date UTC: Thu Sep 18 19:50:29 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw/pbuilderrc_ZBTD + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' shapeit4 = debian-installer -o shapeit4 = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' shapeit4 = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw/pbuilderrc_ZBTD --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw/b2 --logfile b2/build.log shapeit4_4.2.2+dfsg-1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Sep 19 09:50:29 +14 2025 I: pbuilder-time-stamp: 1758225029 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [shapeit4_4.2.2+dfsg-1.dsc] I: copying [./shapeit4_4.2.2+dfsg.orig.tar.xz] I: copying [./shapeit4_4.2.2+dfsg-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./shapeit4_4.2.2+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting shapeit4 in shapeit4-4.2.2+dfsg dpkg-source: info: unpacking shapeit4_4.2.2+dfsg.orig.tar.xz dpkg-source: info: unpacking shapeit4_4.2.2+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_shared_libs.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2286663/tmp/hooks/D01_modify_environment starting debug: Running on codethink04-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Sep 18 19:50 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2286663/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2286663/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=ee346c6fac6e46fa93a581c0dad8eb2c LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2286663 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw/pbuilderrc_ZBTD --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw/b2 --logfile b2/build.log shapeit4_4.2.2+dfsg-1.dsc' SUDO_GID=109 SUDO_HOME=/var/lib/jenkins SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2286663/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libboost-iostreams-dev, libboost-program-options-dev, libbz2-dev, libhts-dev, libssl-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libssl-dev; however: Package libssl-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gcc-14-base{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgcc-14-dev{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu-dev{a} libicu76{a} libidn2-0{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libstdc++-14-dev{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2-16{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix wget 0 packages upgraded, 107 newly installed, 0 to remove and 0 not upgraded. Need to get 68.4 MB of archives. After unpacking 423 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41.1-3 [98.1 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 comerr-dev arm64 2.1-1.47.2-3+b3 [56.9 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.26 [91.8 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-5 [540 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 24 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.16-2 [100 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.26 [939 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 gcc-14-base arm64 14.3.0-8 [52.1 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libicu76 arm64 76.1-4 [9524 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 icu-devtools arm64 76.1-4 [200 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 38 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libgssrpc4t64 arm64 1.21.3-5 [57.2 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libkadm5clnt-mit12 arm64 1.21.3-5 [41.1 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libkdb5-10t64 arm64 1.21.3-5 [41.3 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libkadm5srv-mit12 arm64 1.21.3-5 [53.0 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 krb5-multidev arm64 1.21.3-5 [126 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libgcc-14-dev arm64 14.3.0-8 [2364 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libstdc++-14-dev arm64 14.3.0-8 [2567 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libboost1.83-dev arm64 1.83.0-5 [10.6 MB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libboost-regex1.83.0 arm64 1.83.0-5 [314 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libicu-dev arm64 76.1-4 [10.6 MB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libboost-regex1.83-dev arm64 1.83.0-5 [335 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libboost-iostreams1.83-dev arm64 1.83.0-5 [261 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libboost-iostreams-dev arm64 1.83.0.2+b2 [3568 B] Get: 53 http://deb.debian.org/debian unstable/main arm64 libboost-program-options1.83.0 arm64 1.83.0-5 [331 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libboost-program-options1.83-dev arm64 1.83.0-5 [369 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libboost-program-options-dev arm64 1.83.0.2+b2 [3600 B] Get: 56 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libbrotli-dev arm64 1.1.0-2+b7 [308 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.10-2 [1395 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.11.0-1 [66.7 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.15.1-1 [122 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.15.1-1 [18.6 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.16.0-1 [382 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 libunbound8 arm64 1.23.1-1 [561 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 libgnutls-dane0t64 arm64 3.8.10-2 [456 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libgnutls-openssl27t64 arm64 3.8.10-2 [456 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libidn2-dev arm64 2.3.8-4 [102 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libp11-kit-dev arm64 0.25.5-3 [208 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 libtasn1-6-dev arm64 4.20.0-2 [96.7 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-5 [329 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-5 [621 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 nettle-dev arm64 3.10.1-1 [1325 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libgnutls28-dev arm64 3.8.10-2 [1438 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libkrb5-dev arm64 1.21.3-5 [16.1 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libldap-dev arm64 2.6.10+dfsg-1 [305 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libnghttp2-dev arm64 1.64.0-1.1+b1 [112 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libnghttp3-dev arm64 1.11.0-1 [94.6 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.15.1-1 [24.5 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libngtcp2-dev arm64 1.15.1-1 [179 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-3 [173 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libssl-dev arm64 3.5.3-1 [3377 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libzstd-dev arm64 1.5.7+dfsg-1.1 [335 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 libcurl4-gnutls-dev arm64 8.16.0-1 [525 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 libdeflate-dev arm64 1.23-2 [51.3 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libhtscodecs2 arm64 1.6.1-2 [74.7 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libhts3t64 arm64 1.22.1+ds2-1 [434 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 liblzma-dev arm64 5.8.1-1.1 [344 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libhts-dev arm64 1.22.1+ds2-1 [1684 kB] Fetched 68.4 MB in 0s (200 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../000-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../001-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../002-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../003-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../004-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../005-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../006-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../007-bsdextrautils_2.41.1-3_arm64.deb ... Unpacking bsdextrautils (2.41.1-3) ... Selecting previously unselected package libpipeline1:arm64. 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Preparing to unpack .../104-libhts3t64_1.22.1+ds2-1_arm64.deb ... Unpacking libhts3t64:arm64 (1.22.1+ds2-1) ... Selecting previously unselected package liblzma-dev:arm64. Preparing to unpack .../105-liblzma-dev_5.8.1-1.1_arm64.deb ... Unpacking liblzma-dev:arm64 (5.8.1-1.1) ... Selecting previously unselected package libhts-dev:arm64. Preparing to unpack .../106-libhts-dev_1.22.1+ds2-1_arm64.deb ... Unpacking libhts-dev:arm64 (1.22.1+ds2-1) ... Setting up libhtscodecs2:arm64 (1.6.1-2) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libboost-program-options1.83.0:arm64 (1.83.0-5) ... Setting up libkeyutils1:arm64 (1.6.3-6) ... Setting up libzstd-dev:arm64 (1.5.7+dfsg-1.1) ... Setting up bsdextrautils (2.41.1-3) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up gcc-14-base:arm64 (14.3.0-8) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Setting up libboost-regex1.83.0:arm64 (1.83.0-5) ... Setting up libdebhelper-perl (13.26) ... Setting up libbrotli1:arm64 (1.1.0-2+b7) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up libnghttp2-14:arm64 (1.64.0-1.1+b1) ... Setting up libdeflate0:arm64 (1.23-2) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up libevent-2.1-7t64:arm64 (2.1.12-stable-10+b1) ... Setting up libcom-err2:arm64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.193-3) ... Setting up libkrb5support0:arm64 (1.21.3-5) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-9) ... Setting up autotools-dev (20240727.1) ... Setting up libunbound8:arm64 (1.23.1-1) ... Setting up libpkgconf3:arm64 (1.8.1-4) ... Setting up libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-5) ... Setting up comerr-dev:arm64 (2.1-1.47.2-3+b3) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up libssl-dev:arm64 (3.5.3-1) ... Setting up autopoint (0.23.1-2) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:arm64 (1.21.3-5) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-9) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:arm64 (1.11.0-1) ... Setting up libnghttp3-dev:arm64 (1.11.0-1) ... Setting up liblzma-dev:arm64 (5.8.1-1.1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up libngtcp2-16:arm64 (1.15.1-1) ... Setting up libkrb5-3:arm64 (1.21.3-5) ... Setting up libicu76:arm64 (76.1-4) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libgcc-14-dev:arm64 (14.3.0-8) ... Setting up libtasn1-6-dev:arm64 (4.20.0-2) ... Setting up libdeflate-dev:arm64 (1.23-2) ... Setting up libstdc++-14-dev:arm64 (14.3.0-8) ... Setting up libldap2:arm64 (2.6.10+dfsg-1) ... Setting up libbrotli-dev:arm64 (1.1.0-2+b7) ... Setting up libbz2-dev:arm64 (1.0.8-6) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libboost1.83-dev:arm64 (1.83.0-5) ... Setting up gettext (0.23.1-2+b1) ... Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-5) ... Setting up nettle-dev:arm64 (3.10.1-1) ... Setting up libtool (2.5.4-5) ... Setting up libboost-program-options1.83-dev:arm64 (1.83.0-5) ... Setting up libidn2-0:arm64 (2.3.8-4) ... Setting up libngtcp2-dev:arm64 (1.15.1-1) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libboost-program-options-dev:arm64 (1.83.0.2+b2) ... Setting up libldap-dev:arm64 (2.6.10+dfsg-1) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up icu-devtools (76.1-4) ... Setting up libssh2-1-dev:arm64 (1.11.1-1) ... Setting up libidn2-dev:arm64 (2.3.8-4) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libicu-dev:arm64 (76.1-4) ... Setting up libp11-kit-dev:arm64 (0.25.5-3) ... Setting up libgnutls30t64:arm64 (3.8.10-2) ... Setting up libgnutls-openssl27t64:arm64 (3.8.10-2) ... Setting up libnghttp2-dev:arm64 (1.64.0-1.1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpsl-dev:arm64 (0.21.2-1.1+b1) ... Setting up libgnutls-dane0t64:arm64 (3.8.10-2) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libgssrpc4t64:arm64 (1.21.3-5) ... Setting up libboost-regex1.83-dev:arm64 (1.83.0-5) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.15.1-1) ... Setting up libkadm5clnt-mit12:arm64 (1.21.3-5) ... Setting up libgnutls28-dev:arm64 (3.8.10-2) ... Setting up libkdb5-10t64:arm64 (1.21.3-5) ... Setting up libboost-iostreams1.83-dev:arm64 (1.83.0-5) ... Setting up libcurl3t64-gnutls:arm64 (8.16.0-1) ... Setting up debhelper (13.26) ... Setting up libngtcp2-crypto-gnutls-dev:arm64 (1.15.1-1) ... Setting up libboost-iostreams-dev:arm64 (1.83.0.2+b2) ... Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libkadm5srv-mit12:arm64 (1.21.3-5) ... Setting up libhts3t64:arm64 (1.22.1+ds2-1) ... Setting up krb5-multidev:arm64 (1.21.3-5) ... Setting up libkrb5-dev:arm64 (1.21.3-5) ... Setting up libcurl4-gnutls-dev:arm64 (8.16.0-1) ... Setting up libhts-dev:arm64 (1.22.1+ds2-1) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2286663/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/2286663/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/shapeit4-4.2.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../shapeit4_4.2.2+dfsg-1_source.changes dpkg-buildpackage: info: source package shapeit4 dpkg-buildpackage: info: source version 4.2.2+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Dylan Aïssi dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/shapeit4-4.2.2+dfsg' rm -f obj/*.o bin/shapeit4.2 make[1]: Leaving directory '/build/reproducible-path/shapeit4-4.2.2+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/shapeit4-4.2.2+dfsg' g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/phaser/phaser_parameters.cpp -o obj/phaser_parameters.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/phaser/phaser_management.cpp -o obj/phaser_management.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/phaser/phaser_initialise.cpp -o obj/phaser_initialise.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/phaser/phaser_finalise.cpp -o obj/phaser_finalise.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/phaser/phaser_algorithm.cpp -o obj/phaser_algorithm.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/objects/variant.cpp -o obj/variant.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/objects/hmm_parameters.cpp -o obj/hmm_parameters.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/objects/genotype/genotype_sweep.cpp -o obj/genotype_sweep.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/objects/genotype/genotype_prune.cpp -o obj/genotype_prune.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/objects/genotype/genotype_mask.cpp -o obj/genotype_mask.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/objects/genotype/genotype_managment.cpp -o obj/genotype_managment.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/objects/genotype/genotype_build.cpp -o obj/genotype_build.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/objects/compute_job.cpp -o obj/compute_job.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/modules/pbwt_solver.cpp -o obj/pbwt_solver.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/modules/builder.cpp -o obj/builder.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/models/haplotype_segment_single.cpp -o obj/haplotype_segment_single.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/models/haplotype_segment_double.cpp -o obj/haplotype_segment_double.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/main.cpp -o obj/main.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/io/haplotype_writer.cpp -o obj/haplotype_writer.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/io/graph_writer.cpp -o obj/graph_writer.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/io/gmap_reader.cpp -o obj/gmap_reader.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/io/genotype_reader2.cpp -o obj/genotype_reader2.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/io/genotype_reader1.cpp -o obj/genotype_reader1.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/containers/variant_map.cpp -o obj/variant_map.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/containers/haplotype_set.cpp -o obj/haplotype_set.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/containers/genotype_set.cpp -o obj/genotype_set.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -c src/containers/bitmatrix.cpp -o obj/bitmatrix.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wl,-z,relro -Wl,-z,now -O3 obj/phaser_parameters.o obj/phaser_management.o obj/phaser_initialise.o obj/phaser_finalise.o obj/phaser_algorithm.o obj/variant.o obj/hmm_parameters.o obj/genotype_sweep.o obj/genotype_prune.o obj/genotype_mask.o obj/genotype_managment.o obj/genotype_build.o obj/compute_job.o obj/pbwt_solver.o obj/builder.o obj/haplotype_segment_single.o obj/haplotype_segment_double.o obj/main.o obj/haplotype_writer.o obj/graph_writer.o obj/gmap_reader.o obj/genotype_reader2.o obj/genotype_reader1.o obj/variant_map.o obj/haplotype_set.o obj/genotype_set.o obj/bitmatrix.o -lhts -lboost_iostreams -lboost_program_options -o bin/shapeit4.2 -lz -lbz2 -lm -lpthread -llzma -lcurl -lssl -lcrypto make[1]: Leaving directory '/build/reproducible-path/shapeit4-4.2.2+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'shapeit4' in '../shapeit4_4.2.2+dfsg-1_arm64.deb'. dpkg-deb: building package 'shapeit4-dbgsym' in '../shapeit4-dbgsym_4.2.2+dfsg-1_arm64.deb'. dpkg-deb: building package 'shapeit4-example' in '../shapeit4-example_4.2.2+dfsg-1_all.deb'. dpkg-genbuildinfo --build=binary -O../shapeit4_4.2.2+dfsg-1_arm64.buildinfo dpkg-genchanges --build=binary -O../shapeit4_4.2.2+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2286663/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2286663/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2286663 and its subdirectories I: Current time: Fri Sep 19 09:51:38 +14 2025 I: pbuilder-time-stamp: 1758225098 + false + set +x Thu Sep 18 19:51:38 UTC 2025 I: Signing ./b2/shapeit4_4.2.2+dfsg-1_arm64.buildinfo as shapeit4_4.2.2+dfsg-1_arm64.buildinfo.asc Thu Sep 18 19:51:38 UTC 2025 I: Signed ./b2/shapeit4_4.2.2+dfsg-1_arm64.buildinfo as ./b2/shapeit4_4.2.2+dfsg-1_arm64.buildinfo.asc Thu Sep 18 19:51:38 UTC 2025 - build #2 for shapeit4/unstable/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Thu Sep 18 19:51:38 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-CxlAomc1, removing. /srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw: total 76 drwxrwxr-x 2 jenkins jenkins 4096 Sep 18 19:50 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 18 19:51 b2 -rw------- 1 jenkins jenkins 61320 Sep 18 19:50 rbuildlog.V0OvIVb -rw-rw-r-- 1 jenkins jenkins 2134 Sep 17 2021 shapeit4_4.2.2+dfsg-1.dsc /srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw/b1: total 112940 -rw-r--r-- 1 jenkins jenkins 57741 Sep 18 19:50 build.log -rw-r--r-- 1 jenkins jenkins 3994088 Sep 18 19:50 shapeit4-dbgsym_4.2.2+dfsg-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 52265168 Sep 18 19:50 shapeit4-example_4.2.2+dfsg-1_all.deb -rw-r--r-- 1 jenkins jenkins 5200 Sep 18 19:50 shapeit4_4.2.2+dfsg-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2134 Sep 18 19:50 shapeit4_4.2.2+dfsg-1.dsc -rw-r--r-- 1 jenkins jenkins 7743 Sep 18 19:50 shapeit4_4.2.2+dfsg-1_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 8625 Sep 18 19:50 shapeit4_4.2.2+dfsg-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1843 Sep 18 19:50 shapeit4_4.2.2+dfsg-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 179368 Sep 18 19:50 shapeit4_4.2.2+dfsg-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 1559 Sep 18 19:50 shapeit4_4.2.2+dfsg-1_source.changes -rw-r--r-- 1 jenkins jenkins 58962780 Sep 18 19:50 shapeit4_4.2.2+dfsg.orig.tar.xz /srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw/b2: total 112836 -rw-rw-r-- 1 jenkins jenkins 59682 Sep 18 19:51 build.log -rw-r--r-- 1 jenkins jenkins 3994088 Sep 18 19:51 shapeit4-dbgsym_4.2.2+dfsg-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 52265168 Sep 18 19:51 shapeit4-example_4.2.2+dfsg-1_all.deb -rw-r--r-- 1 jenkins jenkins 5200 Sep 18 19:51 shapeit4_4.2.2+dfsg-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2134 Sep 18 19:51 shapeit4_4.2.2+dfsg-1.dsc -rw-rw-r-- 1 jenkins jenkins 7743 Sep 18 19:51 shapeit4_4.2.2+dfsg-1_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 8625 Sep 18 19:51 shapeit4_4.2.2+dfsg-1_arm64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1843 Sep 18 19:51 shapeit4_4.2.2+dfsg-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 179368 Sep 18 19:51 shapeit4_4.2.2+dfsg-1_arm64.deb -rw-rw-r-- 1 jenkins jenkins 1559 Sep 18 19:51 shapeit4_4.2.2+dfsg-1_source.changes -rw-r--r-- 1 jenkins jenkins 58962780 Sep 18 19:51 shapeit4_4.2.2+dfsg.orig.tar.xz Thu Sep 18 19:51:43 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Thu Sep 18 19:51:44 UTC 2025 I: shapeit4_4.2.2+dfsg-1_arm64.changes: Format: 1.8 Date: Fri, 17 Sep 2021 14:24:24 +0200 Source: shapeit4 Binary: shapeit4 shapeit4-dbgsym shapeit4-example Architecture: arm64 all Version: 4.2.2+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Dylan Aïssi Description: shapeit4 - fast and accurate method for estimation of haplotypes (phasing) shapeit4-example - fast and accurate method for estimation of haplotypes (phasing) - Changes: shapeit4 (4.2.2+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.0 (routine-update) Checksums-Sha1: de6a1f425d3bb6cd7e8b8251a4c3fd60ba89a7bc 3994088 shapeit4-dbgsym_4.2.2+dfsg-1_arm64.deb 96c0a5aedd15e3915a3d957c26a50d29a35034b8 52265168 shapeit4-example_4.2.2+dfsg-1_all.deb e68f43f2f750a92423db6be506bdb6eefea29af8 7743 shapeit4_4.2.2+dfsg-1_arm64.buildinfo c5b5b418776657927fd8bee92e8feb2b13beb490 179368 shapeit4_4.2.2+dfsg-1_arm64.deb Checksums-Sha256: b137207b82ce56dc48ca07d1dbd89e17e76a42be1dab1c24a1b13cea3a5a4dc2 3994088 shapeit4-dbgsym_4.2.2+dfsg-1_arm64.deb a68e8ad16e06e972244c13f04f1a98d87c889cc8e0daf7ff9e4ad3d343be6283 52265168 shapeit4-example_4.2.2+dfsg-1_all.deb ece45ab22bdd2eda9d3cfd2c9a28bd4164a9e81df3ad5b97f228d2767a646e37 7743 shapeit4_4.2.2+dfsg-1_arm64.buildinfo 56444a13f604f113a51901ddaddab12b398345850bf403e4235f5d38019319a3 179368 shapeit4_4.2.2+dfsg-1_arm64.deb Files: 3479a238fd27b9d19eba5d0dc615e405 3994088 debug optional shapeit4-dbgsym_4.2.2+dfsg-1_arm64.deb 9cce2af45d05019e48b695cddb8432d8 52265168 doc optional shapeit4-example_4.2.2+dfsg-1_all.deb 86047ee9f9677ee6500d01b6e2d542e4 7743 science optional shapeit4_4.2.2+dfsg-1_arm64.buildinfo 41a783caf44fa44c4485755f247a7353 179368 science optional shapeit4_4.2.2+dfsg-1_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/shapeit4_4.2.2+dfsg-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/shapeit4_4.2.2+dfsg-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/shapeit4_4.2.2+dfsg-1.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/shapeit4_4.2.2+dfsg-1.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/arm64/shapeit4_4.2.2+dfsg-1_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/shapeit4_4.2.2+dfsg-1.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-09-18 19:50:21.160894206 +0000 +++ b2/build.log 2025-09-18 19:51:38.685003282 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Oct 21 14:12:21 -12 2026 -I: pbuilder-time-stamp: 1792635141 +I: Current time: Fri Sep 19 09:50:29 +14 2025 +I: pbuilder-time-stamp: 1758225029 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -24,53 +24,85 @@ dpkg-source: info: applying use_shared_libs.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2528896/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2286663/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Sep 18 19:50 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2286663/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2286663/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='d1f40726304146d8b1ac2c351bad051d' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2528896' - PS1='# ' - PS2='> ' + INVOCATION_ID=ee346c6fac6e46fa93a581c0dad8eb2c + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2286663 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw/pbuilderrc_gfRJ --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw/b1 --logfile b1/build.log shapeit4_4.2.2+dfsg-1.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw/pbuilderrc_ZBTD --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw/b2 --logfile b2/build.log shapeit4_4.2.2+dfsg-1.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2528896/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2286663/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -223,7 +255,7 @@ Get: 105 http://deb.debian.org/debian unstable/main arm64 libhts3t64 arm64 1.22.1+ds2-1 [434 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 liblzma-dev arm64 5.8.1-1.1 [344 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libhts-dev arm64 1.22.1+ds2-1 [1684 kB] -Fetched 68.4 MB in 0s (165 MB/s) +Fetched 68.4 MB in 0s (200 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) @@ -666,7 +698,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/shapeit4-4.2.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../shapeit4_4.2.2+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/2286663/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2286663/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/shapeit4-4.2.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../shapeit4_4.2.2+dfsg-1_source.changes dpkg-buildpackage: info: source package shapeit4 dpkg-buildpackage: info: source version 4.2.2+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -745,8 +781,8 @@ dh_md5sums dh_builddeb dpkg-deb: building package 'shapeit4' in '../shapeit4_4.2.2+dfsg-1_arm64.deb'. -dpkg-deb: building package 'shapeit4-example' in '../shapeit4-example_4.2.2+dfsg-1_all.deb'. dpkg-deb: building package 'shapeit4-dbgsym' in '../shapeit4-dbgsym_4.2.2+dfsg-1_arm64.deb'. +dpkg-deb: building package 'shapeit4-example' in '../shapeit4-example_4.2.2+dfsg-1_all.deb'. dpkg-genbuildinfo --build=binary -O../shapeit4_4.2.2+dfsg-1_arm64.buildinfo dpkg-genchanges --build=binary -O../shapeit4_4.2.2+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -754,12 +790,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2286663/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2286663/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2528896 and its subdirectories -I: Current time: Wed Oct 21 14:13:20 -12 2026 -I: pbuilder-time-stamp: 1792635200 +I: removing directory /srv/workspace/pbuilder/2286663 and its subdirectories +I: Current time: Fri Sep 19 09:51:38 +14 2025 +I: pbuilder-time-stamp: 1758225098 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/shapeit4_4.2.2+dfsg-1.diff: 68.0% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/shapeit4_4.2.2+dfsg-1.diff.gz b2/build.log: 83.3% -- replaced with stdout Compressing the 1st log... b1/build.log: 84.0% -- replaced with stdout Thu Sep 18 19:51:44 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_shapeit4_unstable_arm64_1758225104 + touch /var/log/reproducible-builds/diffoscope_stamp_shapeit4_unstable_arm64_1758225104 + RESULT=0 + systemd-run '--description=diffoscope on shapeit4/4.2.2+dfsg-1 in unstable/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_5-121677 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw --run-session -c jenkins-reproducible-unstable-diffoscope-a0e67f45-44ea-4b41-a462-54730e3ef6ea -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw/dbd-tmp-uKoz2Kv ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw/shapeit4_4.2.2+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw/shapeit4_4.2.2+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw/shapeit4_4.2.2+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw/b1/shapeit4_4.2.2+dfsg-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw/b2/shapeit4_4.2.2+dfsg-1_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_5-121677.service; invocation ID: 68857e963aca4d1ab9434c1bf2b04ab7 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw/shapeit4_4.2.2+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw/shapeit4_4.2.2+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw/shapeit4_4.2.2+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw/b1/shapeit4_4.2.2+dfsg-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.zSMH4Khw/b2/shapeit4_4.2.2+dfsg-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 230ms CPU time consumed: 194ms Memory peak: 16.9M (swap: 0B) _ _ _ _ _ ___| |__ __ _ _ __ ___(_) |_| || | / __| '_ \ / _` | '_ \ / _ \ | __| || |_ \__ \ | | | (_| | |_) | __/ | |_|__ _| |___/_| |_|\__,_| .__/ \___|_|\__| |_| |_| Thu Sep 18 19:51:45 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Thu Sep 18 19:51:45 UTC 2025 I: shapeit4 from unstable built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-09-18 19:51:46] INFO: Starting at 2025-09-18 19:51:46.113801 [2025-09-18 19:51:46] INFO: Generating the pages of 1 package(s) [2025-09-18 19:51:46] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/arm64/shapeit4 didn't produce a buildlog, even though it has been built. [2025-09-18 19:51:46] CRITICAL: https://tests.reproducible-builds.org/debian/forky/arm64/shapeit4 didn't produce a buildlog, even though it has been built. [2025-09-18 19:51:46] INFO: Finished at 2025-09-18 19:51:46.415413, took: 0:00:00.301619 Thu Sep 18 19:51:46 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/arm64/shapeit4.html Thu Sep 18 19:51:46 UTC 2025 I: Removing signed shapeit4_4.2.2+dfsg-1_arm64.buildinfo.asc files: removed './b1/shapeit4_4.2.2+dfsg-1_arm64.buildinfo.asc' removed './b2/shapeit4_4.2.2+dfsg-1_arm64.buildinfo.asc' 1758225106 arm64 unstable shapeit4 Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/shapeit4_4.2.2+dfsg-1.rbuild.log: 81.1% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/shapeit4_4.2.2+dfsg-1.rbuild.log.gz [2025-09-18 19:51:46] INFO: Starting at 2025-09-18 19:51:46.846421 [2025-09-18 19:51:47] INFO: Generating the pages of 1 package(s) [2025-09-18 19:51:47] CRITICAL: https://tests.reproducible-builds.org/debian/forky/arm64/shapeit4 didn't produce a buildlog, even though it has been built. [2025-09-18 19:51:47] INFO: Finished at 2025-09-18 19:51:47.161525, took: 0:00:00.315111 All cleanup done. Thu Sep 18 19:51:47 UTC 2025 - total duration: 0h 2m 51s. Thu Sep 18 19:51:47 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-EHNEWmKr, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 2min 53.379s CPU time consumed: 6.488s Memory peak: 263.4M (swap: 0B)