Running as unit: rb-build-arm64_5-79556.service ==================================================================================== Thu Jan 23 03:23:43 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_5) on jenkins, called using "codethink03-arm64 codethink04-arm64" as arguments. Thu Jan 23 03:23:43 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-vomk7Qh1" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Jan 23 03:23:43 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Thu Jan 23 03:23:43 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-WacxPJ' Thu Jan 23 03:23:44 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Thu Jan 23 03:23:44 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-f9jbr5' ok, let's check if metastudent-data is building anywhere yet… ok, metastudent-data is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of metastudent-data in trixie on arm64 on jenkins now. 1st build will be done on codethink03-arm64.debian.net. 2nd build will be done on codethink04-arm64.debian.net. ============================================================================= Thu Jan 23 03:24:07 UTC 2025 I: starting to build metastudent-data/trixie/arm64 on jenkins on '2025-01-23 03:23' Thu Jan 23 03:24:07 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_5/79556/console.log 1737602647 arm64 trixie metastudent-data Thu Jan 23 03:24:07 UTC 2025 I: Downloading source for trixie/metastudent-data=2.0.1-8 --2025-01-23 03:24:07-- http://deb.debian.org/debian/pool/main/m/metastudent-data/metastudent-data_2.0.1-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2136 (2.1K) [text/prs.lines.tag] Saving to: ‘metastudent-data_2.0.1-8.dsc’ 0K .. 100% 292M=0s 2025-01-23 03:24:07 (292 MB/s) - ‘metastudent-data_2.0.1-8.dsc’ saved [2136/2136] --2025-01-23 03:24:07-- http://deb.debian.org/debian/pool/main/m/metastudent-data/metastudent-data_2.0.1-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2136 (2.1K) [text/prs.lines.tag] Saving to: ‘metastudent-data_2.0.1-8.dsc’ 0K .. 100% 292M=0s 2025-01-23 03:24:07 (292 MB/s) - ‘metastudent-data_2.0.1-8.dsc’ saved [2136/2136] Thu Jan 23 03:24:07 UTC 2025 I: metastudent-data_2.0.1-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: metastudent-data Binary: metastudent-data Architecture: all Version: 2.0.1-8 Maintainer: Debian Med Packaging Team Uploaders: Tobias Hamp , Laszlo Kajan Homepage: https://rostlab.org/owiki/index.php/Metastudent Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/metastudent-data Vcs-Git: https://salsa.debian.org/med-team/metastudent-data.git Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: ncbi-blast+-legacy | blast2, rsync Package-List: metastudent-data deb science optional arch=all Checksums-Sha1: 69e4fe22d32f87a3dc5da934252b693a91b0c999 152941188 metastudent-data_2.0.1.orig.tar.xz 349c672936c7c43399ac40db53335f6f45b75032 5444 metastudent-data_2.0.1-8.debian.tar.xz Checksums-Sha256: 8bec8a080711cba270256fdbc1035961a63ba0b5af3f6f75f67741e9b53a34e7 152941188 metastudent-data_2.0.1.orig.tar.xz a5fc40b447fd232e02437fb906c4edd1e4c82d30e1564f1f1356bf3054896f4e 5444 metastudent-data_2.0.1-8.debian.tar.xz Files: 981f92b555b8e2846423dd9c0a616ce5 152941188 metastudent-data_2.0.1.orig.tar.xz 271c755735951328425fcbb25f24a362 5444 metastudent-data_2.0.1-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmHpLH8RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHlPA//cKrZ6u0gBLvCe9CBPuQX/qOcaIp6HPj4 bQWPSo0qJhJfIi60ZdnEPCEZmoTcs1oOfHFM+bHzb6wkT+1D1eCk+4D3tcaVfqop yZqfSm+T7dNNI3hiKDRsGVKmKzo241zGsNeZn2mbmHNbzuqmhUSUPWRAnQmcbW8S NRL2gT4wz4cmJSK/NVJUHjQBunOEgt32msHPgC40HNmVW+vJ/qenFb7U8TcYxSaV MRrhboI5L8liMaH2c8F5+WkLqQRMqny3ffy1UnwqWPwLi8OmLXM1TwsBkNVC0N0T gltPOKFmWR+0Kq/SFLueesdwM1c2OZWCLVO5DNba88Aq23THWuxatzc87xwsazKH kJIz+B+pyez+Y9e+Y6dKJWInoaJ64z8nIF0i1YfB1Vx838YoMBCBQ2wzP3o5s3qb 44Fzmunm1YcleNmDRJpzV92DUL/nPIbgYOpYbr3c1aFNqotr1iEb3KBsebA7jKQ2 RgkZYjDfANaIiFntMIZhTKcAox1T5+0XsQrCcFmjO0r4MNDwaQgD0Q1ieq7dat7p lJmOvbV9PVs23yshCQPAua5PKeIoyimoS5EKEUzD9Y0pyMeTKYDoQPicwpcTTjrz XTnm5Ua0MTPxAalRr947rm8pCvILze6M7GAu78TxcxpPEaJpAldnsytPZJ79slHB q319yl1MyT8= =9SXt -----END PGP SIGNATURE----- Thu Jan 23 03:24:07 UTC 2025 I: Checking whether the package is not for us Thu Jan 23 03:24:07 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Thu Jan 23 03:24:07 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Thu Jan 23 03:24:07 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Thu Jan 23 03:24:07 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-Uw1jau' ==================================================================================== Wed Feb 25 09:47:09 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "1 metastudent-data trixie /srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM 2.0.1-8" as arguments. Wed Feb 25 09:47:09 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-gefYEmGp" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Feb 25 09:47:09 UTC 2026 I: Downloading source for trixie/metastudent-data=2.0.1-8 Reading package lists... NOTICE: 'metastudent-data' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/metastudent-data.git Please use: git clone https://salsa.debian.org/med-team/metastudent-data.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 153 MB of source archives. Get:1 http://deb.debian.org/debian trixie/main metastudent-data 2.0.1-8 (dsc) [2136 B] Get:2 http://deb.debian.org/debian trixie/main metastudent-data 2.0.1-8 (tar) [153 MB] Get:3 http://deb.debian.org/debian trixie/main metastudent-data 2.0.1-8 (diff) [5444 B] Fetched 153 MB in 4s (43.0 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'metastudent-data' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/metastudent-data.git Please use: git clone https://salsa.debian.org/med-team/metastudent-data.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 153 MB of source archives. Get:1 http://deb.debian.org/debian trixie/main metastudent-data 2.0.1-8 (dsc) [2136 B] Get:2 http://deb.debian.org/debian trixie/main metastudent-data 2.0.1-8 (tar) [153 MB] Get:3 http://deb.debian.org/debian trixie/main metastudent-data 2.0.1-8 (diff) [5444 B] Fetched 153 MB in 4s (43.0 MB/s) Download complete and in download only mode ============================================================================= Building metastudent-data in trixie on arm64 on codethink03-arm64 now. Date: Wed Feb 25 09:47:13 GMT 2026 Date UTC: Wed Feb 25 09:47:13 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Tue Feb 24 21:47:13 -12 2026 I: pbuilder-time-stamp: 1772012833 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [metastudent-data_2.0.1-8.dsc] I: copying [./metastudent-data_2.0.1.orig.tar.xz] I: copying [./metastudent-data_2.0.1-8.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./metastudent-data_2.0.1-8.dsc: unsupported subcommand dpkg-source: info: extracting metastudent-data in metastudent-data-2.0.1 dpkg-source: info: unpacking metastudent-data_2.0.1.orig.tar.xz dpkg-source: info: unpacking metastudent-data_2.0.1-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_formatdb_fix_prot_dbtype.patch dpkg-source: info: applying use_blastdb_format_4.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3241765/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='c29f79ee414d4676bc5dfbd91275f80d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3241765' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM/pbuilderrc_KSPU --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM/b1 --logfile b1/build.log metastudent-data_2.0.1-8.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3241765/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), ncbi-blast+-legacy | blast2, rsync dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19970 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+-legacy | blast2; however: Package ncbi-blast+-legacy is not installed. Package blast2 is not installed. pbuilder-satisfydepends-dummy depends on rsync; however: Package rsync is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblmdb0{a} libmagic-mgc{a} libmagic1t64{a} libmbedcrypto16{a} libmbedtls21{a} libmbedx509-7{a} libnghttp2-14{a} libnsl2{a} libpipeline1{a} libpopt0{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} media-types{a} ncbi-blast+{a} ncbi-blast+-legacy{a} ncbi-data{a} netbase{a} po-debconf{a} python3{a} python3-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} rsync{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 64 newly installed, 0 to remove and 0 not upgraded. Need to get 45.4 MB of archives. After unpacking 211 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.8-5 [810 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.8-5 [1934 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.12.8-1 [26.9 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-6 [257 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 13 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.8-5 [1904 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.8-5 [677 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.12.8-1 [9788 B] Get: 23 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.12.8-1 [27.9 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libpopt0 arm64 1.19+dfsg-2 [42.8 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 rsync arm64 3.3.0+ds1-4 [408 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-4 [198 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-1 [91.6 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-4 [723 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.23 [90.6 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-2 [539 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 47 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-4 [1532 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.23 [919 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 liblmdb0 arm64 0.9.31-1+b2 [43.5 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libmbedcrypto16 arm64 3.6.2-3 [341 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libmbedx509-7 arm64 3.6.2-3 [146 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libmbedtls21 arm64 3.6.2-3 [222 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libuv1t64 arm64 1.48.0-7 [143 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 ncbi-data all 6.1.20170106+dfsg2-5 [3537 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 ncbi-blast+ arm64 2.16.0+ds-6+b1 [13.8 MB] Get: 64 http://deb.debian.org/debian trixie/main arm64 ncbi-blast+-legacy all 2.16.0+ds-6 [10.4 kB] Fetched 45.4 MB in 0s (93.4 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19970 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-5_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.8-5) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... 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Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-7) ... Setting up rsync (3.3.0+ds1-4) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:arm64 (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:arm64 (3.12.8-5) ... Setting up python3.12 (3.12.8-5) ... Setting up debhelper (13.23) ... Setting up libpython3-stdlib:arm64 (3.12.8-1) ... Setting up python3 (3.12.8-1) ... Setting up ncbi-blast+ (2.16.0+ds-6+b1) ... Setting up ncbi-blast+-legacy (2.16.0+ds-6) ... Processing triggers for libc-bin (2.40-5) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/metastudent-data-2.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../metastudent-data_2.0.1-8_source.changes dpkg-buildpackage: info: source package metastudent-data dpkg-buildpackage: info: source version 2.0.1-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf Makefile.am:4: warning: shell cat dataversion.txt: non-POSIX variable name Makefile.am:4: (probably a GNU make extension) Makefile.am:23: warning: dir $@: non-POSIX variable name Makefile.am:23: (probably a GNU make extension) dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/metastudent-data-2.0.1' mkdir -p dataset_201401/BPO/ && \ makeblastdb -dbtype prot -in "dataset_201401/BPO/goasp.fasta" -out "dataset_201401/BPO/goasp.fasta" -blastdb_version 4 mkdir -p dataset_201401/MFO/ && \ makeblastdb -dbtype prot -in "dataset_201401/MFO/goasp.fasta" -out "dataset_201401/MFO/goasp.fasta" -blastdb_version 4 mkdir -p dataset_201401/CCO/ && \ makeblastdb -dbtype prot -in "dataset_201401/CCO/goasp.fasta" -out "dataset_201401/CCO/goasp.fasta" -blastdb_version 4 Building a new DB, current time: 02/25/2026 09:48:00 Building a new DB, current time: 02/25/2026 09:48:00 Building a new DB, current time: 02/25/2026 09:48:00 New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/MFO/goasp.fasta New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/BPO/goasp.fasta New DB title: dataset_201401/MFO/goasp.fasta New DB title: dataset_201401/BPO/goasp.fasta Sequence type: Protein Sequence type: Protein New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/CCO/goasp.fasta New DB title: dataset_201401/CCO/goasp.fasta Sequence type: Protein Keep MBits: T Keep MBits: T Keep MBits: T Maximum file size: 3000000000B Maximum file size: 3000000000B Maximum file size: 3000000000B Adding sequences from FASTA; added 392822 sequences in 8.54428 seconds. Adding sequences from FASTA; added 459503 sequences in 10.0529 seconds. Adding sequences from FASTA; added 486000 sequences in 10.4505 seconds. make[1]: Leaving directory '/build/reproducible-path/metastudent-data-2.0.1' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/metastudent-data/ make -j12 install DESTDIR=/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/metastudent-data-2.0.1' make[2]: Entering directory '/build/reproducible-path/metastudent-data-2.0.1' make[2]: Nothing to be done for 'install-exec-am'. mkdir -p "/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data" && \ rsync -rt --include '*.txt' --include '*.dat' --include '*.phr' --include '*.pin' --include '*.psq' --exclude '*.*' "./dataset_201401" "/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data/" && \ chmod -R a+rX "/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data" && \ chmod -R u+rwX "/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data" /usr/bin/mkdir -p '/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data' /usr/bin/install -c -m 644 dataversion.txt '/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data' make[2]: Leaving directory '/build/reproducible-path/metastudent-data-2.0.1' make[1]: Leaving directory '/build/reproducible-path/metastudent-data-2.0.1' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'metastudent-data' in '../metastudent-data_2.0.1-8_all.deb'. dpkg-genbuildinfo --build=binary -O../metastudent-data_2.0.1-8_arm64.buildinfo dpkg-genchanges --build=binary -O../metastudent-data_2.0.1-8_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3241765 and its subdirectories I: Current time: Tue Feb 24 21:49:40 -12 2026 I: pbuilder-time-stamp: 1772012980 Wed Feb 25 09:49:40 UTC 2026 I: Signing ./b1/metastudent-data_2.0.1-8_arm64.buildinfo as metastudent-data_2.0.1-8_arm64.buildinfo.asc Wed Feb 25 09:49:40 UTC 2026 I: Signed ./b1/metastudent-data_2.0.1-8_arm64.buildinfo as ./b1/metastudent-data_2.0.1-8_arm64.buildinfo.asc Wed Feb 25 09:49:40 UTC 2026 - build #1 for metastudent-data/trixie/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Wed Feb 25 09:49:40 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-gefYEmGp, removing. /srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Jan 23 03:26 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jan 23 03:24 b2 -rw-r--r-- 1 jenkins jenkins 2136 Jan 20 2022 metastudent-data_2.0.1-8.dsc -rw------- 1 jenkins jenkins 3304 Jan 23 03:24 rbuildlog.LotCsTG /srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM/b1: total 219652 -rw-r--r-- 1 jenkins jenkins 34977 Jan 23 03:26 build.log -rw-r--r-- 1 jenkins jenkins 5444 Jan 23 03:26 metastudent-data_2.0.1-8.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2136 Jan 23 03:26 metastudent-data_2.0.1-8.dsc -rw-r--r-- 1 jenkins jenkins 224714188 Jan 23 03:26 metastudent-data_2.0.1-8_all.deb -rw-r--r-- 1 jenkins jenkins 5832 Jan 23 03:26 metastudent-data_2.0.1-8_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 6714 Jan 23 03:26 metastudent-data_2.0.1-8_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1191 Jan 23 03:26 metastudent-data_2.0.1-8_arm64.changes -rw-r--r-- 1 jenkins jenkins 1334 Jan 23 03:26 metastudent-data_2.0.1-8_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM/b2: total 0 Thu Jan 23 03:26:47 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Feb 24 21:47:13 -12 2026 I: pbuilder-time-stamp: 1772012833 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [metastudent-data_2.0.1-8.dsc] I: copying [./metastudent-data_2.0.1.orig.tar.xz] I: copying [./metastudent-data_2.0.1-8.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./metastudent-data_2.0.1-8.dsc: unsupported subcommand dpkg-source: info: extracting metastudent-data in metastudent-data-2.0.1 dpkg-source: info: unpacking metastudent-data_2.0.1.orig.tar.xz dpkg-source: info: unpacking metastudent-data_2.0.1-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_formatdb_fix_prot_dbtype.patch dpkg-source: info: applying use_blastdb_format_4.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3241765/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='c29f79ee414d4676bc5dfbd91275f80d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3241765' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM/pbuilderrc_KSPU --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM/b1 --logfile b1/build.log metastudent-data_2.0.1-8.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3241765/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), ncbi-blast+-legacy | blast2, rsync dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19970 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+-legacy | blast2; however: Package ncbi-blast+-legacy is not installed. Package blast2 is not installed. pbuilder-satisfydepends-dummy depends on rsync; however: Package rsync is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblmdb0{a} libmagic-mgc{a} libmagic1t64{a} libmbedcrypto16{a} libmbedtls21{a} libmbedx509-7{a} libnghttp2-14{a} libnsl2{a} libpipeline1{a} libpopt0{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} media-types{a} ncbi-blast+{a} ncbi-blast+-legacy{a} ncbi-data{a} netbase{a} po-debconf{a} python3{a} python3-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} rsync{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 64 newly installed, 0 to remove and 0 not upgraded. Need to get 45.4 MB of archives. After unpacking 211 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.8-5 [810 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.8-5 [1934 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.12.8-1 [26.9 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-6 [257 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 13 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.8-5 [1904 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.8-5 [677 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.12.8-1 [9788 B] Get: 23 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.12.8-1 [27.9 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libpopt0 arm64 1.19+dfsg-2 [42.8 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 rsync arm64 3.3.0+ds1-4 [408 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-4 [198 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-1 [91.6 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-4 [723 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.23 [90.6 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-2 [539 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 47 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-4 [1532 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.23 [919 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 liblmdb0 arm64 0.9.31-1+b2 [43.5 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libmbedcrypto16 arm64 3.6.2-3 [341 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libmbedx509-7 arm64 3.6.2-3 [146 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libmbedtls21 arm64 3.6.2-3 [222 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libuv1t64 arm64 1.48.0-7 [143 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 ncbi-data all 6.1.20170106+dfsg2-5 [3537 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 ncbi-blast+ arm64 2.16.0+ds-6+b1 [13.8 MB] Get: 64 http://deb.debian.org/debian trixie/main arm64 ncbi-blast+-legacy all 2.16.0+ds-6 [10.4 kB] Fetched 45.4 MB in 0s (93.4 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19970 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-5_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.8-5) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.8-5_arm64.deb ... Unpacking python3.12-minimal (3.12.8-5) ... Setting up libpython3.12-minimal:arm64 (3.12.8-5) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-5) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20290 files and directories currently installed.) 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../16-libpython3.12-stdlib_3.12.8-5_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.8-5) ... Selecting previously unselected package python3.12. Preparing to unpack .../17-python3.12_3.12.8-5_arm64.deb ... Unpacking python3.12 (3.12.8-5) ... 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Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.23) ... Setting up libuv1t64:arm64 (1.48.0-7) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up libnghttp2-14:arm64 (1.64.0-1) ... Setting up gettext-base (0.22.5-4) ... Setting up m4 (1.4.19-5) ... Setting up libcom-err2:arm64 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up tzdata (2024b-6) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Feb 25 09:47:50 UTC 2026. Universal Time is now: Wed Feb 25 09:47:50 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libunistring5:arm64 (1.3-1) ... Setting up autopoint (0.22.5-4) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up autoconf (2.72-3) ... Setting up libffi8:arm64 (3.4.6-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up netbase (6.4) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libmbedcrypto16:arm64 (3.6.2-3) ... Setting up readline-common (8.2-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libpopt0:arm64 (1.19+dfsg-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-4) ... Setting up libtool (2.5.4-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libmbedx509-7:arm64 (3.6.2-3) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libmbedtls21:arm64 (3.6.2-3) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-7) ... Setting up rsync (3.3.0+ds1-4) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:arm64 (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:arm64 (3.12.8-5) ... Setting up python3.12 (3.12.8-5) ... Setting up debhelper (13.23) ... Setting up libpython3-stdlib:arm64 (3.12.8-1) ... Setting up python3 (3.12.8-1) ... Setting up ncbi-blast+ (2.16.0+ds-6+b1) ... Setting up ncbi-blast+-legacy (2.16.0+ds-6) ... Processing triggers for libc-bin (2.40-5) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/metastudent-data-2.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../metastudent-data_2.0.1-8_source.changes dpkg-buildpackage: info: source package metastudent-data dpkg-buildpackage: info: source version 2.0.1-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf Makefile.am:4: warning: shell cat dataversion.txt: non-POSIX variable name Makefile.am:4: (probably a GNU make extension) Makefile.am:23: warning: dir $@: non-POSIX variable name Makefile.am:23: (probably a GNU make extension) dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/metastudent-data-2.0.1' mkdir -p dataset_201401/BPO/ && \ makeblastdb -dbtype prot -in "dataset_201401/BPO/goasp.fasta" -out "dataset_201401/BPO/goasp.fasta" -blastdb_version 4 mkdir -p dataset_201401/MFO/ && \ makeblastdb -dbtype prot -in "dataset_201401/MFO/goasp.fasta" -out "dataset_201401/MFO/goasp.fasta" -blastdb_version 4 mkdir -p dataset_201401/CCO/ && \ makeblastdb -dbtype prot -in "dataset_201401/CCO/goasp.fasta" -out "dataset_201401/CCO/goasp.fasta" -blastdb_version 4 Building a new DB, current time: 02/25/2026 09:48:00 Building a new DB, current time: 02/25/2026 09:48:00 Building a new DB, current time: 02/25/2026 09:48:00 New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/MFO/goasp.fasta New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/BPO/goasp.fasta New DB title: dataset_201401/MFO/goasp.fasta New DB title: dataset_201401/BPO/goasp.fasta Sequence type: Protein Sequence type: Protein New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/CCO/goasp.fasta New DB title: dataset_201401/CCO/goasp.fasta Sequence type: Protein Keep MBits: T Keep MBits: T Keep MBits: T Maximum file size: 3000000000B Maximum file size: 3000000000B Maximum file size: 3000000000B Adding sequences from FASTA; added 392822 sequences in 8.54428 seconds. Adding sequences from FASTA; added 459503 sequences in 10.0529 seconds. Adding sequences from FASTA; added 486000 sequences in 10.4505 seconds. make[1]: Leaving directory '/build/reproducible-path/metastudent-data-2.0.1' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/metastudent-data/ make -j12 install DESTDIR=/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/metastudent-data-2.0.1' make[2]: Entering directory '/build/reproducible-path/metastudent-data-2.0.1' make[2]: Nothing to be done for 'install-exec-am'. mkdir -p "/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data" && \ rsync -rt --include '*.txt' --include '*.dat' --include '*.phr' --include '*.pin' --include '*.psq' --exclude '*.*' "./dataset_201401" "/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data/" && \ chmod -R a+rX "/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data" && \ chmod -R u+rwX "/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data" /usr/bin/mkdir -p '/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data' /usr/bin/install -c -m 644 dataversion.txt '/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data' make[2]: Leaving directory '/build/reproducible-path/metastudent-data-2.0.1' make[1]: Leaving directory '/build/reproducible-path/metastudent-data-2.0.1' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'metastudent-data' in '../metastudent-data_2.0.1-8_all.deb'. dpkg-genbuildinfo --build=binary -O../metastudent-data_2.0.1-8_arm64.buildinfo dpkg-genchanges --build=binary -O../metastudent-data_2.0.1-8_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3241765 and its subdirectories I: Current time: Tue Feb 24 21:49:40 -12 2026 I: pbuilder-time-stamp: 1772012980 Thu Jan 23 03:26:48 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Thu Jan 23 03:26:48 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Thu Jan 23 03:26:48 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Thu Jan 23 03:26:48 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-jBeKyS' ==================================================================================== Thu Jan 23 03:26:49 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "2 metastudent-data trixie /srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM 2.0.1-8" as arguments. Thu Jan 23 03:26:49 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-UeiWkKe6" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Jan 23 03:26:49 UTC 2025 I: Downloading source for trixie/metastudent-data=2.0.1-8 Reading package lists... NOTICE: 'metastudent-data' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/metastudent-data.git Please use: git clone https://salsa.debian.org/med-team/metastudent-data.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 153 MB of source archives. Get:1 http://deb.debian.org/debian trixie/main metastudent-data 2.0.1-8 (dsc) [2136 B] Get:2 http://deb.debian.org/debian trixie/main metastudent-data 2.0.1-8 (tar) [153 MB] Get:3 http://deb.debian.org/debian trixie/main metastudent-data 2.0.1-8 (diff) [5444 B] Fetched 153 MB in 1s (233 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'metastudent-data' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/metastudent-data.git Please use: git clone https://salsa.debian.org/med-team/metastudent-data.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 153 MB of source archives. Get:1 http://deb.debian.org/debian trixie/main metastudent-data 2.0.1-8 (dsc) [2136 B] Get:2 http://deb.debian.org/debian trixie/main metastudent-data 2.0.1-8 (tar) [153 MB] Get:3 http://deb.debian.org/debian trixie/main metastudent-data 2.0.1-8 (diff) [5444 B] Fetched 153 MB in 1s (233 MB/s) Download complete and in download only mode ============================================================================= Re-Building metastudent-data in trixie on arm64 on codethink04-arm64 now. Date: Thu Jan 23 03:26:50 GMT 2025 Date UTC: Thu Jan 23 03:26:50 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM/pbuilderrc_fLVM + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' metastudent-data = debian-installer -o metastudent-data = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' metastudent-data = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM/pbuilderrc_fLVM --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM/b2 --logfile b2/build.log metastudent-data_2.0.1-8.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Jan 23 17:26:50 +14 2025 I: pbuilder-time-stamp: 1737602810 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [metastudent-data_2.0.1-8.dsc] I: copying [./metastudent-data_2.0.1.orig.tar.xz] I: copying [./metastudent-data_2.0.1-8.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./metastudent-data_2.0.1-8.dsc: unsupported subcommand dpkg-source: info: extracting metastudent-data in metastudent-data-2.0.1 dpkg-source: info: unpacking metastudent-data_2.0.1.orig.tar.xz dpkg-source: info: unpacking metastudent-data_2.0.1-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_formatdb_fix_prot_dbtype.patch dpkg-source: info: applying use_blastdb_format_4.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3512823/tmp/hooks/D01_modify_environment starting debug: Running on codethink04-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jan 23 03:27 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3512823/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3512823/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=4d6b5547afb64eb0aca28b7b4a9d3a56 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3512823 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM/pbuilderrc_fLVM --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM/b2 --logfile b2/build.log metastudent-data_2.0.1-8.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3512823/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), ncbi-blast+-legacy | blast2, rsync dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19970 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+-legacy | blast2; however: Package ncbi-blast+-legacy is not installed. Package blast2 is not installed. pbuilder-satisfydepends-dummy depends on rsync; however: Package rsync is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblmdb0{a} libmagic-mgc{a} libmagic1t64{a} libmbedcrypto16{a} libmbedtls21{a} libmbedx509-7{a} libnghttp2-14{a} libnsl2{a} libpipeline1{a} libpopt0{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} media-types{a} ncbi-blast+{a} ncbi-blast+-legacy{a} ncbi-data{a} netbase{a} po-debconf{a} python3{a} python3-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} rsync{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 64 newly installed, 0 to remove and 0 not upgraded. Need to get 45.4 MB of archives. After unpacking 211 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.8-5 [810 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.8-5 [1934 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.12.8-1 [26.9 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-6 [257 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 13 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.8-5 [1904 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.8-5 [677 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.12.8-1 [9788 B] Get: 23 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.12.8-1 [27.9 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libpopt0 arm64 1.19+dfsg-2 [42.8 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 rsync arm64 3.3.0+ds1-4 [408 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-4 [198 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-1 [91.6 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-4 [723 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.23 [90.6 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-2 [539 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 47 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-4 [1532 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.23 [919 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 liblmdb0 arm64 0.9.31-1+b2 [43.5 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libmbedcrypto16 arm64 3.6.2-3 [341 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libmbedx509-7 arm64 3.6.2-3 [146 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libmbedtls21 arm64 3.6.2-3 [222 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libuv1t64 arm64 1.48.0-7 [143 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 ncbi-data all 6.1.20170106+dfsg2-5 [3537 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 ncbi-blast+ arm64 2.16.0+ds-6+b1 [13.8 MB] Get: 64 http://deb.debian.org/debian trixie/main arm64 ncbi-blast+-legacy all 2.16.0+ds-6 [10.4 kB] Fetched 45.4 MB in 0s (163 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19970 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-5_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.8-5) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.8-5_arm64.deb ... Unpacking python3.12-minimal (3.12.8-5) ... Setting up libpython3.12-minimal:arm64 (3.12.8-5) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-5) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20290 files and directories currently installed.) 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../16-libpython3.12-stdlib_3.12.8-5_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.8-5) ... Selecting previously unselected package python3.12. Preparing to unpack .../17-python3.12_3.12.8-5_arm64.deb ... Unpacking python3.12 (3.12.8-5) ... 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Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.23) ... Setting up libuv1t64:arm64 (1.48.0-7) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up libnghttp2-14:arm64 (1.64.0-1) ... Setting up gettext-base (0.22.5-4) ... Setting up m4 (1.4.19-5) ... Setting up libcom-err2:arm64 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up tzdata (2024b-6) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Jan 23 03:27:30 UTC 2025. Universal Time is now: Thu Jan 23 03:27:30 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libunistring5:arm64 (1.3-1) ... Setting up autopoint (0.22.5-4) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up autoconf (2.72-3) ... Setting up libffi8:arm64 (3.4.6-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up netbase (6.4) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libmbedcrypto16:arm64 (3.6.2-3) ... Setting up readline-common (8.2-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libpopt0:arm64 (1.19+dfsg-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-4) ... Setting up libtool (2.5.4-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libmbedx509-7:arm64 (3.6.2-3) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libmbedtls21:arm64 (3.6.2-3) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-7) ... Setting up rsync (3.3.0+ds1-4) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:arm64 (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:arm64 (3.12.8-5) ... Setting up python3.12 (3.12.8-5) ... Setting up debhelper (13.23) ... Setting up libpython3-stdlib:arm64 (3.12.8-1) ... Setting up python3 (3.12.8-1) ... Setting up ncbi-blast+ (2.16.0+ds-6+b1) ... Setting up ncbi-blast+-legacy (2.16.0+ds-6) ... Processing triggers for libc-bin (2.40-5) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3512823/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/3512823/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/metastudent-data-2.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../metastudent-data_2.0.1-8_source.changes dpkg-buildpackage: info: source package metastudent-data dpkg-buildpackage: info: source version 2.0.1-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf Makefile.am:4: warning: shell cat dataversion.txt: non-POSIX variable name Makefile.am:4: (probably a GNU make extension) Makefile.am:23: warning: dir $@: non-POSIX variable name Makefile.am:23: (probably a GNU make extension) dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/metastudent-data-2.0.1' mkdir -p dataset_201401/BPO/ && \ makeblastdb -dbtype prot -in "dataset_201401/BPO/goasp.fasta" -out "dataset_201401/BPO/goasp.fasta" -blastdb_version 4 mkdir -p dataset_201401/MFO/ && \ makeblastdb -dbtype prot -in "dataset_201401/MFO/goasp.fasta" -out "dataset_201401/MFO/goasp.fasta" -blastdb_version 4 mkdir -p dataset_201401/CCO/ && \ makeblastdb -dbtype prot -in "dataset_201401/CCO/goasp.fasta" -out "dataset_201401/CCO/goasp.fasta" -blastdb_version 4 Building a new DB, current time: 01/23/2025 03:27:48 New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/MFO/goasp.fasta New DB title: dataset_201401/MFO/goasp.fasta Sequence type: Protein Keep MBits: T Maximum file size: 3000000000B Building a new DB, current time: 01/23/2025 03:27:48 New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/BPO/goasp.fasta New DB title: dataset_201401/BPO/goasp.fasta Sequence type: Protein Keep MBits: T Maximum file size: 3000000000B Building a new DB, current time: 01/23/2025 03:27:48 New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/CCO/goasp.fasta New DB title: dataset_201401/CCO/goasp.fasta Sequence type: Protein Keep MBits: T Maximum file size: 3000000000B Adding sequences from FASTA; added 392822 sequences in 11.1968 seconds. Adding sequences from FASTA; added 459503 sequences in 12.5193 seconds. Adding sequences from FASTA; added 486000 sequences in 13.7362 seconds. make[1]: Leaving directory '/build/reproducible-path/metastudent-data-2.0.1' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/metastudent-data/ make -j12 install DESTDIR=/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/metastudent-data-2.0.1' make[2]: Entering directory '/build/reproducible-path/metastudent-data-2.0.1' make[2]: Nothing to be done for 'install-exec-am'. mkdir -p "/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data" && \ rsync -rt --include '*.txt' --include '*.dat' --include '*.phr' --include '*.pin' --include '*.psq' --exclude '*.*' "./dataset_201401" "/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data/" && \ chmod -R a+rX "/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data" && \ chmod -R u+rwX "/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data" /usr/bin/mkdir -p '/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data' /usr/bin/install -c -m 644 dataversion.txt '/build/reproducible-path/metastudent-data-2.0.1/debian/metastudent-data/usr/share/metastudent-data' make[2]: Leaving directory '/build/reproducible-path/metastudent-data-2.0.1' make[1]: Leaving directory '/build/reproducible-path/metastudent-data-2.0.1' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'metastudent-data' in '../metastudent-data_2.0.1-8_all.deb'. dpkg-genbuildinfo --build=binary -O../metastudent-data_2.0.1-8_arm64.buildinfo dpkg-genchanges --build=binary -O../metastudent-data_2.0.1-8_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3512823/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3512823/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3512823 and its subdirectories I: Current time: Thu Jan 23 17:30:36 +14 2025 I: pbuilder-time-stamp: 1737603036 + false + set +x Thu Jan 23 03:30:36 UTC 2025 I: Signing ./b2/metastudent-data_2.0.1-8_arm64.buildinfo as metastudent-data_2.0.1-8_arm64.buildinfo.asc Thu Jan 23 03:30:36 UTC 2025 I: Signed ./b2/metastudent-data_2.0.1-8_arm64.buildinfo as ./b2/metastudent-data_2.0.1-8_arm64.buildinfo.asc Thu Jan 23 03:30:36 UTC 2025 - build #2 for metastudent-data/trixie/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Thu Jan 23 03:30:36 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-UeiWkKe6, removing. /srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM: total 52 drwxr-xr-x 2 jenkins jenkins 4096 Jan 23 03:26 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jan 23 03:30 b2 -rw-r--r-- 1 jenkins jenkins 2136 Jan 20 2022 metastudent-data_2.0.1-8.dsc -rw------- 1 jenkins jenkins 38582 Jan 23 03:26 rbuildlog.LotCsTG /srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM/b1: total 219740 -rw-r--r-- 1 jenkins jenkins 34977 Jan 23 03:26 build.log -rw-r--r-- 1 jenkins jenkins 5444 Jan 23 03:26 metastudent-data_2.0.1-8.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2136 Jan 23 03:26 metastudent-data_2.0.1-8.dsc -rw-r--r-- 1 jenkins jenkins 224714188 Jan 23 03:26 metastudent-data_2.0.1-8_all.deb -rw-r--r-- 1 jenkins jenkins 5832 Jan 23 03:26 metastudent-data_2.0.1-8_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 6714 Jan 23 03:26 metastudent-data_2.0.1-8_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1191 Jan 23 03:26 metastudent-data_2.0.1-8_arm64.changes -rw-r--r-- 1 jenkins jenkins 1334 Jan 23 03:26 metastudent-data_2.0.1-8_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM/b2: total 219580 -rw-r--r-- 1 jenkins jenkins 36919 Jan 23 03:30 build.log -rw-r--r-- 1 jenkins jenkins 5444 Jan 23 03:30 metastudent-data_2.0.1-8.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2136 Jan 23 03:30 metastudent-data_2.0.1-8.dsc -rw-r--r-- 1 jenkins jenkins 224712104 Jan 23 03:30 metastudent-data_2.0.1-8_all.deb -rw-r--r-- 1 jenkins jenkins 5832 Jan 23 03:30 metastudent-data_2.0.1-8_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 6714 Jan 23 03:30 metastudent-data_2.0.1-8_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1191 Jan 23 03:30 metastudent-data_2.0.1-8_arm64.changes -rw-r--r-- 1 jenkins jenkins 1334 Jan 23 03:30 metastudent-data_2.0.1-8_source.changes Thu Jan 23 03:30:46 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Thu Jan 23 03:30:46 UTC 2025 I: metastudent-data_2.0.1-8_arm64.changes: Format: 1.8 Date: Thu, 20 Jan 2022 10:14:54 +0100 Source: metastudent-data Binary: metastudent-data Architecture: all Version: 2.0.1-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: metastudent-data - predictor of Gene Ontology terms from protein sequence - data fil Changes: metastudent-data (2.0.1-8) unstable; urgency=medium . * Team upload. * Upstream download vanished * Standards-Version: 4.6.0 (routine-update) Checksums-Sha1: 4e1fa30c1031015f3a1ad2dc3a59a6f421c8a2fa 224714188 metastudent-data_2.0.1-8_all.deb 461d6b94e561966e7c4ada0bdbf7db3bf13098c5 5832 metastudent-data_2.0.1-8_arm64.buildinfo Checksums-Sha256: caa0ac7f2ca3a81c2c3b4c40072d0254de273386111fe4b983b967a8812a3a89 224714188 metastudent-data_2.0.1-8_all.deb a17e17fe23071e0349d06b1868172b7e935a36cc14d6a97cbeb2316f5cb19d1b 5832 metastudent-data_2.0.1-8_arm64.buildinfo Files: b01efa41e3932d71de985c02846ef73b 224714188 science optional metastudent-data_2.0.1-8_all.deb fecabe35f4ea424ee12bbf8c78821924 5832 science optional metastudent-data_2.0.1-8_arm64.buildinfo removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/metastudent-data_2.0.1-8.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/metastudent-data_2.0.1-8.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/metastudent-data_2.0.1-8.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/metastudent-data_2.0.1-8.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/dbd/trixie/arm64/metastudent-data_2.0.1-8.diffoscope.html' removed '/var/lib/jenkins/userContent/reproducible/debian/dbdtxt/trixie/arm64/metastudent-data_2.0.1-8.diffoscope.txt.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/dbdjson/trixie/arm64/metastudent-data_2.0.1-8.diffoscope.json.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/arm64/metastudent-data_2.0.1-8_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/metastudent-data_2.0.1-8.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-01-23 03:26:40.821579191 +0000 +++ b2/build.log 2025-01-23 03:30:37.538861381 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Feb 24 21:47:13 -12 2026 -I: pbuilder-time-stamp: 1772012833 +I: Current time: Thu Jan 23 17:26:50 +14 2025 +I: pbuilder-time-stamp: 1737602810 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -25,52 +25,84 @@ dpkg-source: info: applying use_blastdb_format_4.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3241765/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3512823/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 23 03:27 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3512823/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3512823/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='c29f79ee414d4676bc5dfbd91275f80d' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3241765' - PS1='# ' - PS2='> ' + INVOCATION_ID=4d6b5547afb64eb0aca28b7b4a9d3a56 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3512823 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM/pbuilderrc_KSPU --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM/b1 --logfile b1/build.log metastudent-data_2.0.1-8.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM/pbuilderrc_fLVM --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM/b2 --logfile b2/build.log metastudent-data_2.0.1-8.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3241765/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3512823/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -175,7 +207,7 @@ Get: 62 http://deb.debian.org/debian trixie/main arm64 ncbi-data all 6.1.20170106+dfsg2-5 [3537 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 ncbi-blast+ arm64 2.16.0+ds-6+b1 [13.8 MB] Get: 64 http://deb.debian.org/debian trixie/main arm64 ncbi-blast+-legacy all 2.16.0+ds-6 [10.4 kB] -Fetched 45.4 MB in 0s (93.4 MB/s) +Fetched 45.4 MB in 0s (163 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19970 files and directories currently installed.) @@ -405,8 +437,8 @@ Setting up tzdata (2024b-6) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Feb 25 09:47:50 UTC 2026. -Universal Time is now: Wed Feb 25 09:47:50 UTC 2026. +Local time is now: Thu Jan 23 03:27:30 UTC 2025. +Universal Time is now: Thu Jan 23 03:27:30 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -462,7 +494,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/metastudent-data-2.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../metastudent-data_2.0.1-8_source.changes +I: user script /srv/workspace/pbuilder/3512823/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3512823/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/metastudent-data-2.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../metastudent-data_2.0.1-8_source.changes dpkg-buildpackage: info: source package metastudent-data dpkg-buildpackage: info: source version 2.0.1-8 dpkg-buildpackage: info: source distribution unstable @@ -503,35 +539,35 @@ makeblastdb -dbtype prot -in "dataset_201401/CCO/goasp.fasta" -out "dataset_201401/CCO/goasp.fasta" -blastdb_version 4 -Building a new DB, current time: 02/25/2026 09:48:00 - - -Building a new DB, current time: 02/25/2026 09:48:00 +Building a new DB, current time: 01/23/2025 03:27:48 +New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/MFO/goasp.fasta +New DB title: dataset_201401/MFO/goasp.fasta +Sequence type: Protein +Keep MBits: T +Maximum file size: 3000000000B -Building a new DB, current time: 02/25/2026 09:48:00 -New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/MFO/goasp.fasta +Building a new DB, current time: 01/23/2025 03:27:48 New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/BPO/goasp.fasta -New DB title: dataset_201401/MFO/goasp.fasta New DB title: dataset_201401/BPO/goasp.fasta Sequence type: Protein -Sequence type: Protein +Keep MBits: T +Maximum file size: 3000000000B + + +Building a new DB, current time: 01/23/2025 03:27:48 New DB name: /build/reproducible-path/metastudent-data-2.0.1/dataset_201401/CCO/goasp.fasta New DB title: dataset_201401/CCO/goasp.fasta Sequence type: Protein Keep MBits: T -Keep MBits: T -Keep MBits: T -Maximum file size: 3000000000B -Maximum file size: 3000000000B Maximum file size: 3000000000B -Adding sequences from FASTA; added 392822 sequences in 8.54428 seconds. +Adding sequences from FASTA; added 392822 sequences in 11.1968 seconds. -Adding sequences from FASTA; added 459503 sequences in 10.0529 seconds. +Adding sequences from FASTA; added 459503 sequences in 12.5193 seconds. -Adding sequences from FASTA; added 486000 sequences in 10.4505 seconds. +Adding sequences from FASTA; added 486000 sequences in 13.7362 seconds. make[1]: Leaving directory '/build/reproducible-path/metastudent-data-2.0.1' @@ -571,12 +607,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3512823/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3512823/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3241765 and its subdirectories -I: Current time: Tue Feb 24 21:49:40 -12 2026 -I: pbuilder-time-stamp: 1772012980 +I: removing directory /srv/workspace/pbuilder/3512823 and its subdirectories +I: Current time: Thu Jan 23 17:30:36 +14 2025 +I: pbuilder-time-stamp: 1737603036 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/metastudent-data_2.0.1-8.diff: 68.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/metastudent-data_2.0.1-8.diff.gz b2/build.log: 78.3% -- replaced with stdout Compressing the 1st log... b1/build.log: 78.9% -- replaced with stdout Thu Jan 23 03:30:47 UTC 2025 I: diffoscope 285 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_metastudent-data_trixie_arm64_1737603047 + touch /var/log/reproducible-builds/diffoscope_stamp_metastudent-data_trixie_arm64_1737603047 + RESULT=0 + systemd-run '--description=diffoscope on metastudent-data/2.0.1-8 in trixie/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_5-79556 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM --run-session -c jenkins-reproducible-trixie-diffoscope-710f8c27-f2c5-47ac-bd48-a20b6bac5967 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM/dbd-tmp-7ujbCWD ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM/metastudent-data_2.0.1-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM/metastudent-data_2.0.1-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM/metastudent-data_2.0.1-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM/b1/metastudent-data_2.0.1-8_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM/b2/metastudent-data_2.0.1-8_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_5-79556.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM/metastudent-data_2.0.1-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM/metastudent-data_2.0.1-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM/metastudent-data_2.0.1-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM/b1/metastudent-data_2.0.1-8_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.2gvY3gaM/b2/metastudent-data_2.0.1-8_arm64.changes ## close_archive (total time: 0.000s) 0.000s 2 calls diffoscope.comparators.deb.DebContainer 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer ## command (total time: 30.637s) 15.638s 30 calls xxd 10.541s 8 calls diff 4.266s 6 calls xz 0.095s 1 call cmp 0.095s 1 call cmp (external) 0.001s 11 calls cmp (internal) ## compare_files (cumulative) (total time: 89.795s) 21.065s 1 call abc.DotChangesFile 21.021s 1 call abc.DebFile 20.112s 2 calls abc.XzFile 15.713s 1 call abc.DebDataTarFile 11.858s 3 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.022s 1 call abc.TarFile 0.005s 1 call abc.Md5sumsFile ## container_extract (total time: 8.252s) 4.266s 6 calls diffoscope.comparators.xz.XzContainer 3.126s 38 calls diffoscope.comparators.deb.DebTarContainer 0.857s 8 calls diffoscope.comparators.deb.DebContainer 0.002s 6 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 8.198s) 8.198s 8 calls linediff ## has_same_content_as (total time: 0.098s) 0.096s 1 call abc.DebDataTarFile 0.001s 3 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.000s 2 calls abc.TextFile 0.000s 2 calls abc.Md5sumsFile 0.000s 1 call abc.DotChangesFile 0.000s 2 calls abc.XzFile 0.000s 1 call abc.DebFile 0.000s 1 call abc.TarFile ## main (total time: 31.543s) 31.543s 2 calls outputs 0.000s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer ## output (total time: 8.230s) 8.229s 1 call html 0.000s 1 call text 0.000s 1 call json ## recognizes (total time: 2.402s) 1.933s 12 calls diffoscope.comparators.binary.FilesystemFile 0.407s 1614 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.035s 54 calls diffoscope.comparators.debian.DebControlMember 0.026s 260 calls diffoscope.comparators.utils.archive.ArchiveMember ## specialize (total time: 0.784s) 0.784s 13 calls specialize Finished with result: success Main processes terminated with: code=exited/status=1 Service runtime: 31.870s CPU time consumed: 1min 5.639s Thu Jan 23 03:31:19 UTC 2025 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Thu Jan 23 03:31:19 UTC 2025 E: metastudent-data failed to build reproducibly in trixie on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-01-23 03:31:20] INFO: Starting at 2025-01-23 03:31:20.571266 [2025-01-23 03:31:20] INFO: Generating the pages of 1 package(s) [2025-01-23 03:31:20] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/arm64/metastudent-data didn't produce a buildlog, even though it has been built. [2025-01-23 03:31:21] INFO: Finished at 2025-01-23 03:31:21.141242, took: 0:00:00.569983 Thu Jan 23 03:31:21 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/arm64/metastudent-data.html Thu Jan 23 03:31:21 UTC 2025 I: Submitting .buildinfo files to external archives: Thu Jan 23 03:31:21 UTC 2025 I: Submitting 8.0K b1/metastudent-data_2.0.1-8_arm64.buildinfo.asc https://buildinfo.debian.net/461d6b94e561966e7c4ada0bdbf7db3bf13098c5/metastudent-data_2.0.1-8_all Thu Jan 23 03:31:22 UTC 2025 I: Submitting 8.0K b2/metastudent-data_2.0.1-8_arm64.buildinfo.asc https://buildinfo.debian.net/64f46e1fb8460bc358f62c440f7ce1d806964af2/metastudent-data_2.0.1-8_all Thu Jan 23 03:31:23 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Jan 23 03:31:23 UTC 2025 I: Done submitting .buildinfo files. Thu Jan 23 03:31:23 UTC 2025 I: Removing signed metastudent-data_2.0.1-8_arm64.buildinfo.asc files: removed './b1/metastudent-data_2.0.1-8_arm64.buildinfo.asc' removed './b2/metastudent-data_2.0.1-8_arm64.buildinfo.asc' 1737603083 arm64 trixie metastudent-data Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/metastudent-data_2.0.1-8.rbuild.log: 76.1% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/metastudent-data_2.0.1-8.rbuild.log.gz [2025-01-23 03:31:23] INFO: Starting at 2025-01-23 03:31:23.558386 [2025-01-23 03:31:23] INFO: Generating the pages of 1 package(s) [2025-01-23 03:31:24] INFO: Finished at 2025-01-23 03:31:24.282641, took: 0:00:00.724263 All cleanup done. Thu Jan 23 03:31:24 UTC 2025 - total duration: 0h 7m 37s. Thu Jan 23 03:31:24 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-vomk7Qh1, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 7min 40.794s CPU time consumed: 13.250s