Running as unit: rb-build-arm64_5-92177.service ==================================================================================== Thu Apr 24 19:25:06 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_5) on jenkins, called using "codethink03-arm64 codethink04-arm64" as arguments. Thu Apr 24 19:25:06 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-J72CJjdl" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Apr 24 19:25:06 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Thu Apr 24 19:25:06 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-HS2A5l' Thu Apr 24 19:25:07 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Thu Apr 24 19:25:07 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-mEbBbZ' ok, let's check if ska is building anywhere yet… ok, ska is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of ska in unstable on arm64 on jenkins now. 1st build will be done on codethink03-arm64.debian.net. 2nd build will be done on codethink04-arm64.debian.net. ============================================================================= Thu Apr 24 19:25:09 UTC 2025 I: starting to build ska/unstable/arm64 on jenkins on '2025-04-24 19:25' Thu Apr 24 19:25:09 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_5/92177/console.log 1745522709 arm64 unstable ska Thu Apr 24 19:25:09 UTC 2025 I: Downloading source for unstable/ska=1.0+dfsg-4 --2025-04-24 19:25:09-- http://deb.debian.org/debian/pool/main/s/ska/ska_1.0%2bdfsg-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2032 (2.0K) [text/prs.lines.tag] Saving to: ‘ska_1.0+dfsg-4.dsc’ 0K . 100% 321M=0s 2025-04-24 19:25:09 (321 MB/s) - ‘ska_1.0+dfsg-4.dsc’ saved [2032/2032] --2025-04-24 19:25:09-- http://deb.debian.org/debian/pool/main/s/ska/ska_1.0%2bdfsg-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2032 (2.0K) [text/prs.lines.tag] Saving to: ‘ska_1.0+dfsg-4.dsc’ 0K . 100% 321M=0s 2025-04-24 19:25:09 (321 MB/s) - ‘ska_1.0+dfsg-4.dsc’ saved [2032/2032] Thu Apr 24 19:25:09 UTC 2025 I: ska_1.0+dfsg-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: ska Binary: ska Architecture: any Version: 1.0+dfsg-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/simonrharris/SKA Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/ska Vcs-Git: https://salsa.debian.org/med-team/ska.git Testsuite: autopkgtest Testsuite-Triggers: build-essential, googletest, libgtest-dev, zlib1g-dev Build-Depends: debhelper-compat (= 13), zlib1g-dev, googletest Package-List: ska deb science optional arch=any Checksums-Sha1: d5e6350fdb1968c91800d6b704495d54ecc0bfc4 85612 ska_1.0+dfsg.orig.tar.xz 66be56949bce8713fbc8ed0a91221394926a3345 4840 ska_1.0+dfsg-4.debian.tar.xz Checksums-Sha256: 1a4aaa448c44b93010ee7dbacd4ff44dcd0876d6f4d9ed20a5ac5bf837e2ab42 85612 ska_1.0+dfsg.orig.tar.xz c5142057c90e05a4a0b48d6eb5d97718c2bd00f132808f2a2c8fed226aacc953 4840 ska_1.0+dfsg-4.debian.tar.xz Files: 6fc4064b3eef8153bee41ead25059339 85612 ska_1.0+dfsg.orig.tar.xz aae9c148071cc82a37f0885618773d2a 4840 ska_1.0+dfsg-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmWuVGsRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtF2PQ//f33+kagu3Oysw5VV+y8hYnGpanTM10kX fgnT5x1POQg8AcAZgSp2F4JsbscNkH70mris1LbFsuSh3heh7uFvVczTo4a229ls MKS954ZOYA2jh2hqnCtjWY68AmhLn+eJmK/i12XDgS6VHmQ/VeDHU2F26iWmWpUx kwMbZiUBjcbd0Zov+uksiRPKCrqvWq8z3nnZqD61vRjsV69rttNyjrym2siBD268 RZKR/Tefsbg73JCsd0zmCS27wFkaD+mfQLVUhLQsI2nKMKxZk0CNyeXIHZyiRDkF ptbFKqPChvqdz71iePNFbCbxmAff6yVEVa40YbDUUIKyZoVJVFbZIMZ/VJ95mZ69 mFd9YCfCEH/CFs2iPURhxmRtENi2U9a66BNNcPApJVMJsNeKg/8ZHFmSAO8Z5El/ LgzEALWP6EBjYzdXZDD/2G5AGjh99y90gLmYHuXacf3oEIlJZba+Tg3adzNkRJZ0 OmmNtMU1rJBllue5MOmyPfxMCDcq0BoLLh4DRsRxDGb9vtg4/ZFZCqC0xrVMq7h4 VnzvWbXrErQg2x3D2ZUY3C4UztIK/1uPaqomFxa93+Q4jjF45tIqLE24pGdfIWSm IrtJp2Q1lzJGB2HA5cSyJpxjISVbV44NL3893TzFLyIz2WbQEiPhEqr2pRGO6YDu uA4osFTeVRM= =rUUd -----END PGP SIGNATURE----- Thu Apr 24 19:25:09 UTC 2025 I: Checking whether the package is not for us Thu Apr 24 19:25:09 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Thu Apr 24 19:25:09 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Thu Apr 24 19:25:09 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Thu Apr 24 19:25:09 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-tlAzGn' ==================================================================================== Thu May 28 01:48:10 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "1 ska unstable /srv/reproducible-results/rbuild-debian/r-b-build.xhflmNUQ 1.0+dfsg-4" as arguments. Thu May 28 01:48:10 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-B1AB8CTa" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu May 28 01:48:10 UTC 2026 I: Downloading source for unstable/ska=1.0+dfsg-4 Reading package lists... NOTICE: 'ska' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ska.git Please use: git clone https://salsa.debian.org/med-team/ska.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 92.5 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main ska 1.0+dfsg-4 (dsc) [2032 B] Get:2 http://deb.debian.org/debian unstable/main ska 1.0+dfsg-4 (tar) [85.6 kB] Get:3 http://deb.debian.org/debian unstable/main ska 1.0+dfsg-4 (diff) [4840 B] Fetched 92.5 kB in 0s (364 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'ska' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ska.git Please use: git clone https://salsa.debian.org/med-team/ska.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 92.5 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main ska 1.0+dfsg-4 (dsc) [2032 B] Get:2 http://deb.debian.org/debian unstable/main ska 1.0+dfsg-4 (tar) [85.6 kB] Get:3 http://deb.debian.org/debian unstable/main ska 1.0+dfsg-4 (diff) [4840 B] Fetched 92.5 kB in 0s (364 kB/s) Download complete and in download only mode ============================================================================= Building ska in unstable on arm64 on codethink03-arm64 now. Date: Thu May 28 02:48:10 BST 2026 Date UTC: Thu May 28 01:48:10 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed May 27 13:48:11 -12 2026 I: pbuilder-time-stamp: 1779932891 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ska_1.0+dfsg-4.dsc] I: copying [./ska_1.0+dfsg.orig.tar.xz] I: copying [./ska_1.0+dfsg-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./ska_1.0+dfsg-4.dsc: unsupported subcommand dpkg-source: info: extracting ska in ska-1.0+dfsg dpkg-source: info: unpacking ska_1.0+dfsg.orig.tar.xz dpkg-source: info: unpacking ska_1.0+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying include_vector.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2586727/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='8948f9eb8e934fe3a75c3ccacaf67c8a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2586727' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.xhflmNUQ/pbuilderrc_g4Qt --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.xhflmNUQ/b1 --logfile b1/build.log ska_1.0+dfsg-4.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2586727/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev, googletest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on googletest; however: Package googletest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 12.3 MB of archives. After unpacking 49.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41-4 [93.9 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.4 [629 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 googletest all 1.16.0-1 [517 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 12.3 MB in 0s (118 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41-4_arm64.deb ... Unpacking bsdextrautils (2.41-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-8_arm64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../23-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.4_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-1_arm64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package googletest. Preparing to unpack .../29-googletest_1.16.0-1_all.deb ... Unpacking googletest (1.16.0-1) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../30-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up googletest (1.16.0-1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-1) ... Setting up autoconf (2.72-3.1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/ska-1.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ska_1.0+dfsg-4_source.changes dpkg-buildpackage: info: source package ska dpkg-buildpackage: info: source version 1.0+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Komolehin Israel Timilehin dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 distclean make[1]: Entering directory '/build/reproducible-path/ska-1.0+dfsg' rm -f build/DNA.o build/general.o build/kmers.o build/sk_align.o build/sk_alleles.o build/sk_compare.o build/sk_distance.o build/sk_fasta.o build/sk_fastq.o build/sk_find.o build/sk_humanise.o build/sk_info.o build/sk_merge.o build/sk_refalign.o build/sk_summary.o build/sk_type.o build/sk_unique.o build/sk_weed.o build/ska.o rm -f bin/ska make[1]: Leaving directory '/build/reproducible-path/ska-1.0+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/ska-1.0+dfsg' g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/DNA.cpp -o build/DNA.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/general.cpp -o build/general.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/kmers.cpp -o build/kmers.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_align.cpp -o build/sk_align.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_alleles.cpp -o build/sk_alleles.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_compare.cpp -o build/sk_compare.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_distance.cpp -o build/sk_distance.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_fasta.cpp -o build/sk_fasta.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_fastq.cpp -o build/sk_fastq.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_find.cpp -o build/sk_find.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_humanise.cpp -o build/sk_humanise.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_info.cpp -o build/sk_info.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_merge.cpp -o build/sk_merge.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_refalign.cpp -o build/sk_refalign.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_summary.cpp -o build/sk_summary.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_type.cpp -o build/sk_type.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_unique.cpp -o build/sk_unique.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_weed.cpp -o build/sk_weed.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/ska.cpp -o build/ska.o g++ -g -std=c++0x -O2 -o bin/ska build/DNA.o build/general.o build/kmers.o build/sk_align.o build/sk_alleles.o build/sk_compare.o build/sk_distance.o build/sk_fasta.o build/sk_fastq.o build/sk_find.o build/sk_humanise.o build/sk_info.o build/sk_merge.o build/sk_refalign.o build/sk_summary.o build/sk_type.o build/sk_unique.o build/sk_weed.o build/ska.o -lz make[1]: Leaving directory '/build/reproducible-path/ska-1.0+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/ska-1.0+dfsg' cp -a tests tests.bak cd tests && ln -s /usr/src/googletest/googletest && make && \ ./general_unittest && ./kmers_unittest && ./DNA_unittest make[2]: Entering directory '/build/reproducible-path/ska-1.0+dfsg/tests' g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -g -O2 -ffile-prefix-map=/build/reproducible-path/ska-1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++14 -g -Wall -Wextra -pthread -c ../src//general.cpp ../src//general.cpp: In function ‘int openGzFileStream(const std::string&, igzstream&, bool)’: ../src//general.cpp:40:83: warning: unused parameter ‘verbose’ [-Wunused-parameter] 40 | int openGzFileStream(const std::string & fileName, igzstream & gzFileStream, bool verbose){ | ~~~~~^~~~~~~ g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -Igoogletest -g -O2 -ffile-prefix-map=/build/reproducible-path/ska-1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++14 -g -Wall -Wextra -pthread -c \ googletest/src/gtest-all.cc g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -Igoogletest -g -O2 -ffile-prefix-map=/build/reproducible-path/ska-1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++14 -g -Wall -Wextra -pthread -c \ googletest/src/gtest_main.cc ar -rv gtest_main.a gtest-all.o gtest_main.o ar: creating gtest_main.a a - gtest-all.o a - gtest_main.o g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -g -O2 -ffile-prefix-map=/build/reproducible-path/ska-1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++14 -g -Wall -Wextra -pthread -lpthread general.o general_unittest.cpp gtest_main.a -o general_unittest -lz g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -g -O2 -ffile-prefix-map=/build/reproducible-path/ska-1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++14 -g -Wall -Wextra -pthread -c ../src//kmers.cpp ../src//kmers.cpp: In function ‘int printKmerFile(const std::unordered_map, std::array >&, std::string, int, float)’: ../src//kmers.cpp:70:22: warning: unused variable ‘basefound’ [-Wunused-variable] 70 | bool basefound=false; | ^~~~~~~~~ ../src//kmers.cpp:75:22: warning: unused variable ‘maxbase’ [-Wunused-variable] 75 | char maxbase; | ^~~~~~~ ../src//kmers.cpp: In function ‘void addKmerToStringMap(std::unordered_map, std::__cxx11::basic_string >&, const std::string&, char, const std::vector&, const std::vector&, int, int, int)’: ../src//kmers.cpp:265:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 265 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 274 | for (int i=0; i, std::array >&, const int&)’: ../src//kmers.cpp:304:15: warning: unused variable ‘filecovcutoff’ [-Wunused-variable] 304 | float filecovcutoff; | ^~~~~~~~~~~~~ ../src//kmers.cpp: In function ‘int printKmerFile(const std::unordered_map, std::array >&, std::string, int, float)’: ../src//kmers.cpp:69:22: warning: ‘base’ may be used uninitialized [-Wmaybe-uninitialized] 69 | char base; | ^~~~ g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -g -O2 -ffile-prefix-map=/build/reproducible-path/ska-1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++14 -g -Wall -Wextra -pthread -c ../src//DNA.cpp ../src//DNA.cpp: In function ‘int circulariseSequence(std::string&, int)’: ../src//DNA.cpp:187:32: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 187 | if (mySequence.length() usr/bin I: user script /srv/workspace/pbuilder/2586727/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev, googletest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on googletest; however: Package googletest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 12.3 MB of archives. After unpacking 49.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41-4 [93.9 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.4 [629 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 googletest all 1.16.0-1 [517 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 12.3 MB in 0s (118 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. 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Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-8_arm64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. 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Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../23-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.4_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-1_arm64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package googletest. Preparing to unpack .../29-googletest_1.16.0-1_all.deb ... Unpacking googletest (1.16.0-1) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../30-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up googletest (1.16.0-1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-1) ... Setting up autoconf (2.72-3.1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/ska-1.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ska_1.0+dfsg-4_source.changes dpkg-buildpackage: info: source package ska dpkg-buildpackage: info: source version 1.0+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Komolehin Israel Timilehin dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 distclean make[1]: Entering directory '/build/reproducible-path/ska-1.0+dfsg' rm -f build/DNA.o build/general.o build/kmers.o build/sk_align.o build/sk_alleles.o build/sk_compare.o build/sk_distance.o build/sk_fasta.o build/sk_fastq.o build/sk_find.o build/sk_humanise.o build/sk_info.o build/sk_merge.o build/sk_refalign.o build/sk_summary.o build/sk_type.o build/sk_unique.o build/sk_weed.o build/ska.o rm -f bin/ska make[1]: Leaving directory '/build/reproducible-path/ska-1.0+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/ska-1.0+dfsg' g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/DNA.cpp -o build/DNA.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/general.cpp -o build/general.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/kmers.cpp -o build/kmers.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_align.cpp -o build/sk_align.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_alleles.cpp -o build/sk_alleles.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_compare.cpp -o build/sk_compare.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_distance.cpp -o build/sk_distance.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_fasta.cpp -o build/sk_fasta.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_fastq.cpp -o build/sk_fastq.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_find.cpp -o build/sk_find.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_humanise.cpp -o build/sk_humanise.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_info.cpp -o build/sk_info.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_merge.cpp -o build/sk_merge.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_refalign.cpp -o build/sk_refalign.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_summary.cpp -o build/sk_summary.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_type.cpp -o build/sk_type.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_unique.cpp -o build/sk_unique.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_weed.cpp -o build/sk_weed.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/ska.cpp -o build/ska.o g++ -g -std=c++0x -O2 -o bin/ska build/DNA.o build/general.o build/kmers.o build/sk_align.o build/sk_alleles.o build/sk_compare.o build/sk_distance.o build/sk_fasta.o build/sk_fastq.o build/sk_find.o build/sk_humanise.o build/sk_info.o build/sk_merge.o build/sk_refalign.o build/sk_summary.o build/sk_type.o build/sk_unique.o build/sk_weed.o build/ska.o -lz make[1]: Leaving directory '/build/reproducible-path/ska-1.0+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/ska-1.0+dfsg' cp -a tests tests.bak cd tests && ln -s /usr/src/googletest/googletest && make && \ ./general_unittest && ./kmers_unittest && ./DNA_unittest make[2]: Entering directory '/build/reproducible-path/ska-1.0+dfsg/tests' g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -g -O2 -ffile-prefix-map=/build/reproducible-path/ska-1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++14 -g -Wall -Wextra -pthread -c ../src//general.cpp ../src//general.cpp: In function ‘int openGzFileStream(const std::string&, igzstream&, bool)’: ../src//general.cpp:40:83: warning: unused parameter ‘verbose’ [-Wunused-parameter] 40 | int openGzFileStream(const std::string & fileName, igzstream & gzFileStream, bool verbose){ | ~~~~~^~~~~~~ g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -Igoogletest -g -O2 -ffile-prefix-map=/build/reproducible-path/ska-1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++14 -g -Wall -Wextra -pthread -c \ googletest/src/gtest-all.cc g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -Igoogletest -g -O2 -ffile-prefix-map=/build/reproducible-path/ska-1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++14 -g -Wall -Wextra -pthread -c \ googletest/src/gtest_main.cc ar -rv gtest_main.a gtest-all.o gtest_main.o ar: creating gtest_main.a a - gtest-all.o a - gtest_main.o g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -g -O2 -ffile-prefix-map=/build/reproducible-path/ska-1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++14 -g -Wall -Wextra -pthread -lpthread general.o general_unittest.cpp gtest_main.a -o general_unittest -lz g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -g -O2 -ffile-prefix-map=/build/reproducible-path/ska-1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++14 -g -Wall -Wextra -pthread -c ../src//kmers.cpp ../src//kmers.cpp: In function ‘int printKmerFile(const std::unordered_map, std::array >&, std::string, int, float)’: ../src//kmers.cpp:70:22: warning: unused variable ‘basefound’ [-Wunused-variable] 70 | bool basefound=false; | ^~~~~~~~~ ../src//kmers.cpp:75:22: warning: unused variable ‘maxbase’ [-Wunused-variable] 75 | char maxbase; | ^~~~~~~ ../src//kmers.cpp: In function ‘void addKmerToStringMap(std::unordered_map, std::__cxx11::basic_string >&, const std::string&, char, const std::vector&, const std::vector&, int, int, int)’: ../src//kmers.cpp:265:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 265 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 274 | for (int i=0; i, std::array >&, const int&)’: ../src//kmers.cpp:304:15: warning: unused variable ‘filecovcutoff’ [-Wunused-variable] 304 | float filecovcutoff; | ^~~~~~~~~~~~~ ../src//kmers.cpp: In function ‘int printKmerFile(const std::unordered_map, std::array >&, std::string, int, float)’: ../src//kmers.cpp:69:22: warning: ‘base’ may be used uninitialized [-Wmaybe-uninitialized] 69 | char base; | ^~~~ g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -g -O2 -ffile-prefix-map=/build/reproducible-path/ska-1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++14 -g -Wall -Wextra -pthread -c ../src//DNA.cpp ../src//DNA.cpp: In function ‘int circulariseSequence(std::string&, int)’: ../src//DNA.cpp:187:32: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 187 | if (mySequence.length() '/bin/bash' lrwxrwxrwx 1 root root 9 Apr 24 19:26 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2045448/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2045448/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=0f4e4f89c90c4b8dbc245040a02f80ae LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2045448 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.xhflmNUQ/pbuilderrc_YqpF --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.xhflmNUQ/b2 --logfile b2/build.log ska_1.0+dfsg-4.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2045448/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev, googletest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on googletest; however: Package googletest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 12.3 MB of archives. After unpacking 49.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41-4 [93.9 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.4 [629 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 googletest all 1.16.0-1 [517 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 12.3 MB in 0s (107 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41-4_arm64.deb ... Unpacking bsdextrautils (2.41-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... 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Setting up googletest (1.16.0-1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-1) ... Setting up autoconf (2.72-3.1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2045448/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/2045448/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/ska-1.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ska_1.0+dfsg-4_source.changes dpkg-buildpackage: info: source package ska dpkg-buildpackage: info: source version 1.0+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Komolehin Israel Timilehin dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 distclean make[1]: Entering directory '/build/reproducible-path/ska-1.0+dfsg' rm -f build/DNA.o build/general.o build/kmers.o build/sk_align.o build/sk_alleles.o build/sk_compare.o build/sk_distance.o build/sk_fasta.o build/sk_fastq.o build/sk_find.o build/sk_humanise.o build/sk_info.o build/sk_merge.o build/sk_refalign.o build/sk_summary.o build/sk_type.o build/sk_unique.o build/sk_weed.o build/ska.o rm -f bin/ska make[1]: Leaving directory '/build/reproducible-path/ska-1.0+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/ska-1.0+dfsg' g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/DNA.cpp -o build/DNA.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/general.cpp -o build/general.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/kmers.cpp -o build/kmers.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_align.cpp -o build/sk_align.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_alleles.cpp -o build/sk_alleles.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_compare.cpp -o build/sk_compare.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_distance.cpp -o build/sk_distance.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_fasta.cpp -o build/sk_fasta.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_fastq.cpp -o build/sk_fastq.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_find.cpp -o build/sk_find.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_humanise.cpp -o build/sk_humanise.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_info.cpp -o build/sk_info.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_merge.cpp -o build/sk_merge.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_refalign.cpp -o build/sk_refalign.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_summary.cpp -o build/sk_summary.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_type.cpp -o build/sk_type.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_unique.cpp -o build/sk_unique.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_weed.cpp -o build/sk_weed.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/ska.cpp -o build/ska.o g++ -g -std=c++0x -O2 -o bin/ska build/DNA.o build/general.o build/kmers.o build/sk_align.o build/sk_alleles.o build/sk_compare.o build/sk_distance.o build/sk_fasta.o build/sk_fastq.o build/sk_find.o build/sk_humanise.o build/sk_info.o build/sk_merge.o build/sk_refalign.o build/sk_summary.o build/sk_type.o build/sk_unique.o build/sk_weed.o build/ska.o -lz make[1]: Leaving directory '/build/reproducible-path/ska-1.0+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/ska-1.0+dfsg' cp -a tests tests.bak cd tests && ln -s /usr/src/googletest/googletest && make && \ ./general_unittest && ./kmers_unittest && ./DNA_unittest make[2]: Entering directory '/build/reproducible-path/ska-1.0+dfsg/tests' g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -g -O2 -ffile-prefix-map=/build/reproducible-path/ska-1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++14 -g -Wall -Wextra -pthread -c ../src//general.cpp ../src//general.cpp: In function ‘int openGzFileStream(const std::string&, igzstream&, bool)’: ../src//general.cpp:40:83: warning: unused parameter ‘verbose’ [-Wunused-parameter] 40 | int openGzFileStream(const std::string & fileName, igzstream & gzFileStream, bool verbose){ | ~~~~~^~~~~~~ g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -Igoogletest -g -O2 -ffile-prefix-map=/build/reproducible-path/ska-1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++14 -g -Wall -Wextra -pthread -c \ googletest/src/gtest-all.cc g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -Igoogletest -g -O2 -ffile-prefix-map=/build/reproducible-path/ska-1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++14 -g -Wall -Wextra -pthread -c \ googletest/src/gtest_main.cc ar -rv gtest_main.a gtest-all.o gtest_main.o ar: creating gtest_main.a a - gtest-all.o a - gtest_main.o g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -g -O2 -ffile-prefix-map=/build/reproducible-path/ska-1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++14 -g -Wall -Wextra -pthread -lpthread general.o general_unittest.cpp gtest_main.a -o general_unittest -lz g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -g -O2 -ffile-prefix-map=/build/reproducible-path/ska-1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++14 -g -Wall -Wextra -pthread -c ../src//kmers.cpp ../src//kmers.cpp: In function ‘int printKmerFile(const std::unordered_map, std::array >&, std::string, int, float)’: ../src//kmers.cpp:70:22: warning: unused variable ‘basefound’ [-Wunused-variable] 70 | bool basefound=false; | ^~~~~~~~~ ../src//kmers.cpp:75:22: warning: unused variable ‘maxbase’ [-Wunused-variable] 75 | char maxbase; | ^~~~~~~ ../src//kmers.cpp: In function ‘void addKmerToStringMap(std::unordered_map, std::__cxx11::basic_string >&, const std::string&, char, const std::vector&, const std::vector&, int, int, int)’: ../src//kmers.cpp:265:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 265 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 274 | for (int i=0; i, std::array >&, const int&)’: ../src//kmers.cpp:304:15: warning: unused variable ‘filecovcutoff’ [-Wunused-variable] 304 | float filecovcutoff; | ^~~~~~~~~~~~~ ../src//kmers.cpp: In function ‘int printKmerFile(const std::unordered_map, std::array >&, std::string, int, float)’: ../src//kmers.cpp:69:22: warning: ‘base’ may be used uninitialized [-Wmaybe-uninitialized] 69 | char base; | ^~~~ g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -g -O2 -ffile-prefix-map=/build/reproducible-path/ska-1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++14 -g -Wall -Wextra -pthread -c ../src//DNA.cpp ../src//DNA.cpp: In function ‘int circulariseSequence(std::string&, int)’: ../src//DNA.cpp:187:32: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 187 | if (mySequence.length() Changed-By: Komolehin Israel Timilehin Description: ska - Split Kmer Analysis Changes: ska (1.0+dfsg-4) unstable; urgency=medium . * Team upload. * Added autopkgtest Checksums-Sha1: 46f372aa1edc7aea81542b79be5c4a6c22837718 2261264 ska-dbgsym_1.0+dfsg-4_arm64.deb c5470979c0c75e7ebcabd4d84a64dec997c2dd8a 4891 ska_1.0+dfsg-4_arm64.buildinfo de65f0a65dc65bd9b58e03526bb3c905c3f1793f 131292 ska_1.0+dfsg-4_arm64.deb Checksums-Sha256: 9d97424a7e30ae592d0d81b781d56733bcf63fea3ba368cb690a245c74761ba5 2261264 ska-dbgsym_1.0+dfsg-4_arm64.deb e94ab99e8cc55388b9101581c39cc96123ce65b6e9613a1206e87bf69b805534 4891 ska_1.0+dfsg-4_arm64.buildinfo a9c2ce5ca7b7fdf4314623a8c87e749ca17c1fca4da1edcaebc20318e65a4468 131292 ska_1.0+dfsg-4_arm64.deb Files: 9fefb3287f23dcf33fc3ab1de89867fd 2261264 debug optional ska-dbgsym_1.0+dfsg-4_arm64.deb d14d909c37404ab45c3d09eafbdc0f12 4891 science optional ska_1.0+dfsg-4_arm64.buildinfo 2cce7bc1803accbba48be660ebffabd4 131292 science optional ska_1.0+dfsg-4_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/ska_1.0+dfsg-4.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/ska_1.0+dfsg-4.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/ska_1.0+dfsg-4.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/ska_1.0+dfsg-4.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/arm64/ska_1.0+dfsg-4_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/ska_1.0+dfsg-4.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-04-24 19:26:12.881525491 +0000 +++ b2/build.log 2025-04-24 19:27:57.331313669 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed May 27 13:48:11 -12 2026 -I: pbuilder-time-stamp: 1779932891 +I: Current time: Fri Apr 25 09:26:16 +14 2025 +I: pbuilder-time-stamp: 1745522776 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -24,52 +24,84 @@ dpkg-source: info: applying include_vector.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2586727/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2045448/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 24 19:26 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2045448/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2045448/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='8948f9eb8e934fe3a75c3ccacaf67c8a' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2586727' - PS1='# ' - PS2='> ' + INVOCATION_ID=0f4e4f89c90c4b8dbc245040a02f80ae + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2045448 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.xhflmNUQ/pbuilderrc_g4Qt --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.xhflmNUQ/b1 --logfile b1/build.log ska_1.0+dfsg-4.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.xhflmNUQ/pbuilderrc_YqpF --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.xhflmNUQ/b2 --logfile b2/build.log ska_1.0+dfsg-4.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2586727/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2045448/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -140,7 +172,7 @@ Get: 29 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 googletest all 1.16.0-1 [517 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] -Fetched 12.3 MB in 0s (118 MB/s) +Fetched 12.3 MB in 0s (107 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19953 files and directories currently installed.) @@ -279,7 +311,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ska-1.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ska_1.0+dfsg-4_source.changes +I: user script /srv/workspace/pbuilder/2045448/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2045448/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ska-1.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ska_1.0+dfsg-4_source.changes dpkg-buildpackage: info: source package ska dpkg-buildpackage: info: source version 1.0+dfsg-4 dpkg-buildpackage: info: source distribution unstable @@ -403,7 +439,7 @@ [----------] 4 tests from openFileStreamTest (0 ms total) [----------] Global test environment tear-down -[==========] 6 tests from 2 test suites ran. (0 ms total) +[==========] 6 tests from 2 test suites ran. (6 ms total) [ PASSED ] 6 tests. Running main() from googletest/src/gtest_main.cc [==========] Running 6 tests from 3 test suites. @@ -527,8 +563,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'ska' in '../ska_1.0+dfsg-4_arm64.deb'. dpkg-deb: building package 'ska-dbgsym' in '../ska-dbgsym_1.0+dfsg-4_arm64.deb'. +dpkg-deb: building package 'ska' in '../ska_1.0+dfsg-4_arm64.deb'. dpkg-genbuildinfo --build=binary -O../ska_1.0+dfsg-4_arm64.buildinfo dpkg-genchanges --build=binary -O../ska_1.0+dfsg-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -536,12 +572,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2045448/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2045448/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2586727 and its subdirectories -I: Current time: Wed May 27 13:49:11 -12 2026 -I: pbuilder-time-stamp: 1779932951 +I: removing directory /srv/workspace/pbuilder/2045448 and its subdirectories +I: Current time: Fri Apr 25 09:27:56 +14 2025 +I: pbuilder-time-stamp: 1745522876 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/ska_1.0+dfsg-4.diff: 67.0% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/ska_1.0+dfsg-4.diff.gz b2/build.log: 77.3% -- replaced with stdout Compressing the 1st log... b1/build.log: 78.3% -- replaced with stdout Thu Apr 24 19:27:59 UTC 2025 I: diffoscope 294 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_ska_unstable_arm64_1745522879 + touch /var/log/reproducible-builds/diffoscope_stamp_ska_unstable_arm64_1745522879 + RESULT=0 + systemd-run '--description=diffoscope on ska/1.0+dfsg-4 in unstable/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_5-92177 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.xhflmNUQ --run-session -c jenkins-reproducible-unstable-diffoscope-89570055-0c3e-4a59-82ee-41b097d222a4 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.xhflmNUQ/dbd-tmp-mNXYA9C ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.xhflmNUQ/ska_1.0+dfsg-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.xhflmNUQ/ska_1.0+dfsg-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.xhflmNUQ/ska_1.0+dfsg-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.xhflmNUQ/b1/ska_1.0+dfsg-4_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.xhflmNUQ/b2/ska_1.0+dfsg-4_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_5-92177.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.xhflmNUQ/ska_1.0+dfsg-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.xhflmNUQ/ska_1.0+dfsg-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.xhflmNUQ/ska_1.0+dfsg-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.xhflmNUQ/b1/ska_1.0+dfsg-4_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.xhflmNUQ/b2/ska_1.0+dfsg-4_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 217ms CPU time consumed: 217ms _ ___| | ____ _ / __| |/ / _` | \__ \ < (_| | |___/_|\_\__,_| Thu Apr 24 19:27:59 UTC 2025 I: diffoscope 294 found no differences in the changes files, and a .buildinfo file also exists. Thu Apr 24 19:27:59 UTC 2025 I: ska from unstable built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-04-24 19:28:00] INFO: Starting at 2025-04-24 19:28:00.360993 [2025-04-24 19:28:00] INFO: Generating the pages of 1 package(s) [2025-04-24 19:28:00] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/arm64/ska didn't produce a buildlog, even though it has been built. [2025-04-24 19:28:00] INFO: Finished at 2025-04-24 19:28:00.597080, took: 0:00:00.236093 Thu Apr 24 19:28:00 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/arm64/ska.html Thu Apr 24 19:28:00 UTC 2025 I: Submitting .buildinfo files to external archives: Thu Apr 24 19:28:00 UTC 2025 I: Submitting 8.0K b1/ska_1.0+dfsg-4_arm64.buildinfo.asc https://buildinfo.debian.net/c5470979c0c75e7ebcabd4d84a64dec997c2dd8a/ska_1.0+dfsg-4_arm64 Thu Apr 24 19:28:23 UTC 2025 I: Submitting 8.0K b2/ska_1.0+dfsg-4_arm64.buildinfo.asc https://buildinfo.debian.net/4ed0d96ec9207fe40433127829f2ad6f1b66f976/ska_1.0+dfsg-4_arm64 Thu Apr 24 19:28:46 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Apr 24 19:28:46 UTC 2025 I: Done submitting .buildinfo files. Thu Apr 24 19:28:46 UTC 2025 I: Removing signed ska_1.0+dfsg-4_arm64.buildinfo.asc files: removed './b1/ska_1.0+dfsg-4_arm64.buildinfo.asc' removed './b2/ska_1.0+dfsg-4_arm64.buildinfo.asc' 1745522926 arm64 unstable ska Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/ska_1.0+dfsg-4.rbuild.log: 74.9% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/ska_1.0+dfsg-4.rbuild.log.gz [2025-04-24 19:28:46] INFO: Starting at 2025-04-24 19:28:46.686685 [2025-04-24 19:28:46] INFO: Generating the pages of 1 package(s) [2025-04-24 19:28:46] INFO: Finished at 2025-04-24 19:28:46.916104, took: 0:00:00.229426 All cleanup done. Thu Apr 24 19:28:47 UTC 2025 - total duration: 0h 2m 53s. Thu Apr 24 19:28:47 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-J72CJjdl, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 3min 40.717s CPU time consumed: 6.711s