Running as unit: rb-build-arm64_6-66873.service ==================================================================================== Fri Nov 22 00:58:53 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_6) on jenkins, called using "codethink04-arm64 codethink01-arm64" as arguments. Fri Nov 22 00:58:53 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-bMOphCBE" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Nov 22 00:58:53 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Fri Nov 22 00:58:53 UTC 2024 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-3XtybF' Fri Nov 22 00:58:53 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink01-arm64.debian.net is marked as down. Fri Nov 22 00:58:53 UTC 2024 - checking via ssh if codethink01-arm64.debian.net is up. removed '/tmp/read-only-fs-test-vs6TDY' ok, let's check if abpoa is building anywhere yet… ok, abpoa is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of abpoa in trixie on arm64 on jenkins now. 1st build will be done on codethink04-arm64.debian.net. 2nd build will be done on codethink01-arm64.debian.net. ============================================================================= Fri Nov 22 00:58:59 UTC 2024 I: starting to build abpoa/trixie/arm64 on jenkins on '2024-11-22 00:58' Fri Nov 22 00:58:59 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_6/66873/console.log 1732237139 arm64 trixie abpoa Fri Nov 22 00:58:59 UTC 2024 I: Downloading source for trixie/abpoa=1.5.3-1 --2024-11-22 00:58:59-- http://deb.debian.org/debian/pool/main/a/abpoa/abpoa_1.5.3-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2276 (2.2K) [text/prs.lines.tag] Saving to: ‘abpoa_1.5.3-1.dsc’ 0K .. 100% 266M=0s 2024-11-22 00:58:59 (266 MB/s) - ‘abpoa_1.5.3-1.dsc’ saved [2276/2276] --2024-11-22 00:58:59-- http://deb.debian.org/debian/pool/main/a/abpoa/abpoa_1.5.3-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2276 (2.2K) [text/prs.lines.tag] Saving to: ‘abpoa_1.5.3-1.dsc’ 0K .. 100% 266M=0s 2024-11-22 00:58:59 (266 MB/s) - ‘abpoa_1.5.3-1.dsc’ saved [2276/2276] Fri Nov 22 00:58:59 UTC 2024 I: abpoa_1.5.3-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: abpoa Binary: abpoa, python3-pyabpoa Architecture: any Version: 1.5.3-1 Maintainer: Debian Med Packaging Team Uploaders: Étienne Mollier Homepage: https://github.com/yangao07/abPOA Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/abpoa Vcs-Git: https://salsa.debian.org/med-team/abpoa.git Testsuite: autopkgtest, autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-python, cython3, graphviz , libsimde-dev, libpython3-all-dev, python3-all-dev:any, python3-setuptools, python3-wheel, zlib1g-dev Package-List: abpoa deb science optional arch=any python3-pyabpoa deb python optional arch=any Checksums-Sha1: 8886087aa919b09058022eb8cefb3b61c7071cdc 163420 abpoa_1.5.3.orig.tar.gz 4ab0298e05aaaba1b2543fd02c79e946abf3d17e 9836 abpoa_1.5.3-1.debian.tar.xz Checksums-Sha256: 9e4b98b8bcc50c4c139824c24b055004140b59677ba0f54bd29a8150606ec17e 163420 abpoa_1.5.3.orig.tar.gz 6f6309a4a38988f078c7569082a9bede5b6548455b9ed68ec001c4d729ce7202 9836 abpoa_1.5.3-1.debian.tar.xz Files: d3a71c5318fb463e1e884029584cd2dd 163420 abpoa_1.5.3.orig.tar.gz 6126124b8128a44dc0438a8260fd8410 9836 abpoa_1.5.3-1.debian.tar.xz Dgit: d1e006748b179fbb833ca2bd4099cd16b729231e debian archive/debian/1.5.3-1 https://git.dgit.debian.org/abpoa -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmb0YBoUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqGBA/+KPiETp88kvayUtpaKSUW3XBxTOXW l/eT+RIkjB9LPSKe4zdUz8tpmSNlY2+XiGBp4gKHPBpsDbN+IlPXe3Tiis/1Tm5Z ximf6b0IVzM9ijgFy0Bml5BAroBhYloQjILyQ+ldIOdV8XPYP7MDgTFexqaZhLMh eIvxh8AGeiqIZxx5F2Vh7rYTvMtfEswCpYEzQubehI4qNbmbd81+ib/ObuyPo2Ao mMUOru6PRZx/ft8cjXcbvVoY1zhQBCwxjfxy+8frwNSGt5lVI0a6BvMhbNQvKpri ncZMyOQf2ZqMbuMkmMWFy4iA3fmt5XfLl0MlK31n4/Zwe1fz7fJ70OvMCVD/yzeX h18aNoK3TKdrsoiVIOVsOG9D3SMbqXYVQZqOPIO2F4K725KqVq7c8X5moTjMTxvA NmN7TG12UqCtXxoO62LhzZqVBDQvCM/XJ9R82VS9oBrsffr2z4caZoqX6vOMBfub m+2szEkk7viXRIF+OFe8J1VqWNR7CKwMX0DSsmlyfDYCrDPU/8Z7/enFr1l9sZtk 59tqJvdDrtqxZpCWrQcvs0C6qbR3ZfAyajRA876zHAXTD04u275SzA66TSDlJKUO ditk6Ge+qtM40ykxAyd/wmmAmgGb68m2I0bikyurrYgCmSnodV1bF0iQ8s87WUnO u/a+otXYA+Jotxg= =Z6Y6 -----END PGP SIGNATURE----- Fri Nov 22 00:58:59 UTC 2024 I: Checking whether the package is not for us Fri Nov 22 00:58:59 UTC 2024 I: Starting 1st build on remote node codethink04-arm64.debian.net. Fri Nov 22 00:58:59 UTC 2024 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Fri Nov 22 00:58:59 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Fri Nov 22 00:58:59 UTC 2024 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-7O3yYu' ==================================================================================== Fri Nov 22 00:59:00 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "1 abpoa trixie /srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ 1.5.3-1" as arguments. Fri Nov 22 00:59:00 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-mUI3ntx5" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Nov 22 00:59:00 UTC 2024 I: Downloading source for trixie/abpoa=1.5.3-1 Reading package lists... NOTICE: 'abpoa' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/abpoa.git Please use: git clone https://salsa.debian.org/med-team/abpoa.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 176 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main abpoa 1.5.3-1 (dsc) [2276 B] Get:2 http://deb.debian.org/debian trixie/main abpoa 1.5.3-1 (tar) [163 kB] Get:3 http://deb.debian.org/debian trixie/main abpoa 1.5.3-1 (diff) [9836 B] Fetched 176 kB in 0s (5616 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'abpoa' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/abpoa.git Please use: git clone https://salsa.debian.org/med-team/abpoa.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 176 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main abpoa 1.5.3-1 (dsc) [2276 B] Get:2 http://deb.debian.org/debian trixie/main abpoa 1.5.3-1 (tar) [163 kB] Get:3 http://deb.debian.org/debian trixie/main abpoa 1.5.3-1 (diff) [9836 B] Fetched 176 kB in 0s (5616 kB/s) Download complete and in download only mode ============================================================================= Building abpoa in trixie on arm64 on codethink04-arm64 now. Date: Fri Nov 22 00:59:01 GMT 2024 Date UTC: Fri Nov 22 00:59:01 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Nov 21 12:59:01 -12 2024 I: pbuilder-time-stamp: 1732237141 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [abpoa_1.5.3-1.dsc] I: copying [./abpoa_1.5.3.orig.tar.gz] I: copying [./abpoa_1.5.3-1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Sep 25 19:10:18 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./abpoa_1.5.3-1.dsc: no acceptable signature found dpkg-source: info: extracting abpoa in abpoa-1.5.3 dpkg-source: info: unpacking abpoa_1.5.3.orig.tar.gz dpkg-source: info: unpacking abpoa_1.5.3-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying debian-simde.patch dpkg-source: info: applying buildflags.patch dpkg-source: info: applying baseline.patch dpkg-source: info: applying relax-cython-dep.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3811010/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='070d2486ec0846cd93a8b7be673f8d40' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3811010' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ/pbuilderrc_EuH1 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ/b1 --logfile b1/build.log abpoa_1.5.3-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3811010/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, cython3, graphviz, libsimde-dev, libpython3-all-dev, python3-all-dev:any, python3-setuptools, python3-wheel, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on graphviz; however: Package graphviz is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on libpython3-all-dev; however: Package libpython3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev:any. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-wheel; however: Package python3-wheel is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} graphviz{a} groff-base{a} intltool-debian{a} libabsl20230802{a} libann0{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libbrotli1{a} libcairo2{a} libcdt5{a} libcgraph6{a} libcom-err2{a} libdatrie1{a} libdav1d7{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgd3{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgts-0.7-5t64{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libice6{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblab-gamut1{a} liblerc4{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpathplan4{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libraqm0{a} librav1e0.7{a} libreadline8t64{a} libsharpyuv0{a} libsimde-dev{a} libsm6{a} libsvtav1enc2{a} libthai-data{a} libthai0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libyuv0{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-liberation javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libgts-bin libheif-plugin-aomenc libheif-plugin-x265 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 146 newly installed, 0 to remove and 0 not upgraded. Need to get 58.1 MB of archives. After unpacking 243 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.7-3 [808 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.7-3 [1940 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 12 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.7-3 [1902 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 cython3 arm64 3.0.11+dfsg-1+b1 [2726 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-8 [517 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 45 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 59 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 74.1.2-2 [736 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20241024 [109 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.44-2 [273 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-1.1+b1 [318 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-1.1+b1 [387 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 fontconfig arm64 2.15.0-1.1+b1 [463 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libann0 arm64 1.1.2+doc-9+b2 [24.1 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libcdt5 arm64 2.42.4-2+b1 [39.4 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libcgraph6 arm64 2.42.4-2+b1 [61.3 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libaom3 arm64 3.11.0-1 [1690 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libdav1d7 arm64 1.5.0-1+b1 [248 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libabsl20230802 arm64 20230802.1-4 [432 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libgav1-1 arm64 0.19.0-2+b2 [493 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 librav1e0.7 arm64 0.7.1-7+b2 [653 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libsvtav1enc2 arm64 2.2.1+dfsg-2 [1463 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libyuv0 arm64 0.0.1888.20241107-1 [135 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libavif16 arm64 1.1.1-1 [109 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.4.0-0.1+b1 [112 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libheif-plugin-dav1d arm64 1.19.3-1 [11.2 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libde265-0 arm64 1.0.15-1+b2 [153 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libheif-plugin-libde265 arm64 1.19.3-1 [14.9 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libheif1 arm64 1.19.3-1 [419 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 libimagequant0 arm64 2.18.0-1+b2 [34.6 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libfribidi0 arm64 1.0.15-1 [71.8 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.82.2-2 [1409 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 10.0.1-1 [441 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 libraqm0 arm64 0.10.1-1+b2 [13.8 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.4.0-0.1+b1 [268 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.2-3+b2 [24.4 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 libxpm4 arm64 1:3.5.17-1+b2 [53.2 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 libgd3 arm64 2.3.3-12+b1 [115 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 libgts-0.7-5t64 arm64 0.7.6+darcs121130-5.2+b1 [145 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b2 [27.2 kB] Get: 113 http://deb.debian.org/debian trixie/main arm64 libcairo2 arm64 1.18.2-2 [483 kB] Get: 114 http://deb.debian.org/debian trixie/main arm64 libltdl7 arm64 2.4.7-8 [392 kB] Get: 115 http://deb.debian.org/debian trixie/main arm64 libthai-data all 0.1.29-2 [168 kB] Get: 116 http://deb.debian.org/debian trixie/main arm64 libdatrie1 arm64 0.2.13-3+b1 [37.6 kB] Get: 117 http://deb.debian.org/debian trixie/main arm64 libthai0 arm64 0.1.29-2+b1 [48.4 kB] Get: 118 http://deb.debian.org/debian trixie/main arm64 libpango-1.0-0 arm64 1.54.0+ds-3 [210 kB] Get: 119 http://deb.debian.org/debian trixie/main arm64 libpangoft2-1.0-0 arm64 1.54.0+ds-3 [51.8 kB] Get: 120 http://deb.debian.org/debian trixie/main arm64 libpangocairo-1.0-0 arm64 1.54.0+ds-3 [33.5 kB] Get: 121 http://deb.debian.org/debian trixie/main arm64 libpathplan4 arm64 2.42.4-2+b1 [41.4 kB] Get: 122 http://deb.debian.org/debian trixie/main arm64 libgvc6 arm64 2.42.4-2+b1 [628 kB] Get: 123 http://deb.debian.org/debian trixie/main arm64 libgvpr2 arm64 2.42.4-2+b1 [182 kB] Get: 124 http://deb.debian.org/debian trixie/main arm64 liblab-gamut1 arm64 2.42.4-2+b1 [198 kB] Get: 125 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+23.1 [216 kB] Get: 126 http://deb.debian.org/debian trixie/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get: 127 http://deb.debian.org/debian trixie/main arm64 libsm6 arm64 2:1.2.4-1 [34.2 kB] Get: 128 http://deb.debian.org/debian trixie/main arm64 libxt6t64 arm64 1:1.2.1-1.2+b1 [173 kB] Get: 129 http://deb.debian.org/debian trixie/main arm64 libxmu6 arm64 2:1.1.3-3+b3 [55.6 kB] Get: 130 http://deb.debian.org/debian trixie/main arm64 libxaw7 arm64 2:1.0.16-1 [195 kB] Get: 131 http://deb.debian.org/debian trixie/main arm64 graphviz arm64 2.42.4-2+b1 [574 kB] Get: 132 http://deb.debian.org/debian trixie/main arm64 libexpat1-dev arm64 2.6.4-1 [143 kB] Get: 133 http://deb.debian.org/debian trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 134 http://deb.debian.org/debian trixie/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 135 http://deb.debian.org/debian trixie/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 136 http://deb.debian.org/debian trixie/main arm64 libpython3.12t64 arm64 3.12.7-3 [1982 kB] Get: 137 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 138 http://deb.debian.org/debian trixie/main arm64 libpython3.12-dev arm64 3.12.7-3 [4792 kB] Get: 139 http://deb.debian.org/debian trixie/main arm64 libpython3-dev arm64 3.12.6-1 [9952 B] Get: 140 http://deb.debian.org/debian trixie/main arm64 libpython3-all-dev arm64 3.12.6-1 [1064 B] Get: 141 http://deb.debian.org/debian trixie/main arm64 libsimde-dev all 0.8.2-1 [465 kB] Get: 142 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.12.6-1 [1040 B] Get: 143 http://deb.debian.org/debian trixie/main arm64 python3.12-dev arm64 3.12.7-3 [505 kB] Get: 144 http://deb.debian.org/debian trixie/main arm64 python3-dev arm64 3.12.6-1 [26.1 kB] Get: 145 http://deb.debian.org/debian trixie/main arm64 python3-all-dev arm64 3.12.6-1 [1068 B] Get: 146 http://deb.debian.org/debian trixie/main arm64 python3-wheel all 0.45.0-1 [56.7 kB] Fetched 58.1 MB in 0s (212 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.7-3) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_arm64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:arm64 (3.12.7-3) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20407 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_arm64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../14-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_arm64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21469 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.6-1_arm64.deb ... Unpacking python3 (3.12.6-1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/abpoa-1.5.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../abpoa_1.5.3-1_source.changes dpkg-buildpackage: info: source package abpoa dpkg-buildpackage: info: source version 1.5.3-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with=python3 --buildsystem=pybuild debian/rules execute_before_dh_testdir make[1]: Entering directory '/build/reproducible-path/abpoa-1.5.3' # Guard against outdated maintainer manual page. # Hint: help2man does mostly the right thing except for stderr # capture, multiple commands support, and commands description. grep -q 1.5.3 debian/manuals/abpoa.1 make[1]: Leaving directory '/build/reproducible-path/abpoa-1.5.3' dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running clean removing '/build/reproducible-path/abpoa-1.5.3/.pybuild/cpython3_3.12_pyabpoa/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with=python3 --buildsystem=pybuild debian/rules execute_before_dh_testdir make[1]: Entering directory '/build/reproducible-path/abpoa-1.5.3' # Guard against outdated maintainer manual page. # Hint: help2man does mostly the right thing except for stderr # capture, multiple commands support, and commands description. grep -q 1.5.3 debian/manuals/abpoa.1 make[1]: Leaving directory '/build/reproducible-path/abpoa-1.5.3' dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running build running build_ext /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/abpoa-1.5.3/python/pyabpoa.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling python/pyabpoa.pyx because it changed. [1/1] Cythonizing python/pyabpoa.pyx building 'pyabpoa' extension creating build creating build/temp.linux-aarch64-cpython-312 creating build/temp.linux-aarch64-cpython-312/python creating build/temp.linux-aarch64-cpython-312/src aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c python/pyabpoa.c -o build/temp.linux-aarch64-cpython-312/python/pyabpoa.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from python/pyabpoa.c:1285: include/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/abpoa_align.c -o build/temp.linux-aarch64-cpython-312/src/abpoa_align.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/abpoa_seq.h:5, from src/abpoa_align.c:7: src/kseq.h:217:16: warning: ‘kseq_copy’ defined but not used [-Wunused-function] 217 | SCOPE void kseq_copy(kseq_t *seq, kseq_t kseq)\ | ^~~~~~~~~ src/kseq.h:235:9: note: in expansion of macro ‘__KSEQ_COPY’ 235 | __KSEQ_COPY(SCOPE) | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:176:19: warning: ‘kseq_read’ defined but not used [-Wunused-function] 176 | SCOPE int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ src/kseq.h:234:9: note: in expansion of macro ‘__KSEQ_READ’ 234 | __KSEQ_READ(SCOPE) \ | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ In file included from src/abpoa.h:5, from src/abpoa_align.c:4: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/abpoa_graph.c -o build/temp.linux-aarch64-cpython-312/src/abpoa_graph.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/abpoa_seq.h:5, from src/abpoa_graph.c:5: src/kseq.h:217:16: warning: ‘kseq_copy’ defined but not used [-Wunused-function] 217 | SCOPE void kseq_copy(kseq_t *seq, kseq_t kseq)\ | ^~~~~~~~~ src/kseq.h:235:9: note: in expansion of macro ‘__KSEQ_COPY’ 235 | __KSEQ_COPY(SCOPE) | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:176:19: warning: ‘kseq_read’ defined but not used [-Wunused-function] 176 | SCOPE int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ src/kseq.h:234:9: note: in expansion of macro ‘__KSEQ_READ’ 234 | __KSEQ_READ(SCOPE) \ | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:162:20: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 162 | SCOPE void kseq_destroy(kseq_t *ks) \ | ^~~~~~~~~~~~ src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’ 233 | __KSEQ_BASIC(SCOPE, type_t) \ | ^~~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:156:23: warning: ‘kseq_init’ defined but not used [-Wunused-function] 156 | SCOPE kseq_t *kseq_init(type_t fd) \ | ^~~~~~~~~ src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’ 233 | __KSEQ_BASIC(SCOPE, type_t) \ | ^~~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ In file included from src/abpoa.h:5, from src/abpoa_align.h:4, from src/abpoa_graph.c:4: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/abpoa_output.c -o build/temp.linux-aarch64-cpython-312/src/abpoa_output.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/abpoa_seq.h:5, from src/abpoa_output.c:7: src/kseq.h:217:16: warning: ‘kseq_copy’ defined but not used [-Wunused-function] 217 | SCOPE void kseq_copy(kseq_t *seq, kseq_t kseq)\ | ^~~~~~~~~ src/kseq.h:235:9: note: in expansion of macro ‘__KSEQ_COPY’ 235 | __KSEQ_COPY(SCOPE) | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:176:19: warning: ‘kseq_read’ defined but not used [-Wunused-function] 176 | SCOPE int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ src/kseq.h:234:9: note: in expansion of macro ‘__KSEQ_READ’ 234 | __KSEQ_READ(SCOPE) \ | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:162:20: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 162 | SCOPE void kseq_destroy(kseq_t *ks) \ | ^~~~~~~~~~~~ src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’ 233 | __KSEQ_BASIC(SCOPE, type_t) \ | ^~~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:156:23: warning: ‘kseq_init’ defined but not used [-Wunused-function] 156 | SCOPE kseq_t *kseq_init(type_t fd) \ | ^~~~~~~~~ src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’ 233 | __KSEQ_BASIC(SCOPE, type_t) \ | ^~~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ In file included from src/abpoa.h:5, from src/abpoa_output.c:4: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/abpoa_plot.c -o build/temp.linux-aarch64-cpython-312/src/abpoa_plot.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/abpoa.h:5, from src/abpoa_plot.c:3: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/abpoa_seed.c -o build/temp.linux-aarch64-cpython-312/src/abpoa_seed.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_seed.c: In function ‘abpoa_dp_chaining_of_local_chains’: src/abpoa_seed.c:458:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 458 | for (i = _n; i < par_anchors->n; ++i) { | ^ In file included from src/abpoa.h:5, from src/abpoa_seed.c:5: src/simd_instruction.h: At top level: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/abpoa_seq.c -o build/temp.linux-aarch64-cpython-312/src/abpoa_seq.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/abpoa_seq.h:5, from src/abpoa_seq.c:4: src/kseq.h:217:16: warning: ‘kseq_copy’ defined but not used [-Wunused-function] 217 | SCOPE void kseq_copy(kseq_t *seq, kseq_t kseq)\ | ^~~~~~~~~ src/kseq.h:235:9: note: in expansion of macro ‘__KSEQ_COPY’ 235 | __KSEQ_COPY(SCOPE) | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:162:20: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 162 | SCOPE void kseq_destroy(kseq_t *ks) \ | ^~~~~~~~~~~~ src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’ 233 | __KSEQ_BASIC(SCOPE, type_t) \ | ^~~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:156:23: warning: ‘kseq_init’ defined but not used [-Wunused-function] 156 | SCOPE kseq_t *kseq_init(type_t fd) \ | ^~~~~~~~~ src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’ 233 | __KSEQ_BASIC(SCOPE, type_t) \ | ^~~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ In file included from src/abpoa.h:5, from src/abpoa_seq.h:4: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/kalloc.c -o build/temp.linux-aarch64-cpython-312/src/kalloc.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/kstring.c -o build/temp.linux-aarch64-cpython-312/src/kstring.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/kstring.c: In function ‘kvsprintf’: src/kstring.c:15:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 15 | if (l + 1 > s->m - s->l) { | ^ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/simd_abpoa_align.c -o build/temp.linux-aarch64-cpython-312/src/simd_abpoa_align.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/simd_check.c -o build/temp.linux-aarch64-cpython-312/src/simd_check.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/simd_check.c:1: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/utils.c -o build/temp.linux-aarch64-cpython-312/src/utils.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES build/temp.linux-aarch64-cpython-312/python/pyabpoa.o build/temp.linux-aarch64-cpython-312/src/abpoa_align.o build/temp.linux-aarch64-cpython-312/src/abpoa_graph.o build/temp.linux-aarch64-cpython-312/src/abpoa_output.o build/temp.linux-aarch64-cpython-312/src/abpoa_plot.o build/temp.linux-aarch64-cpython-312/src/abpoa_seed.o build/temp.linux-aarch64-cpython-312/src/abpoa_seq.o build/temp.linux-aarch64-cpython-312/src/kalloc.o build/temp.linux-aarch64-cpython-312/src/kstring.o build/temp.linux-aarch64-cpython-312/src/simd_abpoa_align.o build/temp.linux-aarch64-cpython-312/src/simd_check.o build/temp.linux-aarch64-cpython-312/src/utils.o -L/usr/lib/aarch64-linux-gnu -lz -lm -lpthread -o /build/reproducible-path/abpoa-1.5.3/.pybuild/cpython3_3.12_pyabpoa/build/pyabpoa.cpython-312-aarch64-linux-gnu.so debian/rules execute_after_dh_auto_build make[1]: Entering directory '/build/reproducible-path/abpoa-1.5.3' dh_auto_build --buildsystem=makefile -- all make -j12 "INSTALL=install --strip-program=true" all make[2]: Entering directory '/build/reproducible-path/abpoa-1.5.3' cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -march=armv8-a+simd -D__AVX2__ -I./include src/abpoa.c -o src/abpoa.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa_align.c -I./include -o src/abpoa_align.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa_graph.c -I./include -o src/abpoa_graph.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa_plot.c -I./include -o src/abpoa_plot.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa_seed.c -I./include -o src/abpoa_seed.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa_seq.c -I./include -o src/abpoa_seq.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa_output.c -I./include -o src/abpoa_output.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/kalloc.c -I./include -o src/kalloc.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/kstring.c -I./include -o src/kstring.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -march=armv8-a+simd -D__AVX2__ -I./include src/simd_abpoa_align.c -o src/simd_abpoa_align.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -march=armv8-a+simd -D__AVX2__ -I./include src/simd_check.c -o src/simd_check.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/utils.c -I./include -o src/utils.o In file included from /usr/include/string.h:548, from src/abpoa_seed.c:4: In function ‘memset’, inlined from ‘abpoa_dp_chaining’ at src/abpoa_seed.c:549:36: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:59:10: warning: ‘__builtin_memset’ specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 59 | return __builtin___memset_chk (__dest, __ch, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ if [ ! -d ./lib ]; then mkdir ./lib; fi ar -csr lib/libabpoa.a ./src/abpoa_align.o ./src/abpoa_graph.o ./src/abpoa_plot.o ./src/abpoa_seed.o ./src/abpoa_seq.o ./src/abpoa_output.o ./src/kalloc.o ./src/kstring.o ./src/simd_abpoa_align.o ./src/simd_check.o ./src/utils.o if [ ! -d ./bin ]; then mkdir ./bin; fi cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa.o -I./include -L./lib -labpoa -lm -lz -lpthread -o bin/abpoa make[2]: Leaving directory '/build/reproducible-path/abpoa-1.5.3' mv -v bin/abpoa bin/abpoa.generic renamed 'bin/abpoa' -> 'bin/abpoa.generic' cp debian/abpoa-dispatch.sh bin/abpoa make[1]: Leaving directory '/build/reproducible-path/abpoa-1.5.3' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/abpoa-1.5.3' # Tests from the README.md document ./bin/abpoa ./test_data/seq.fa > cons.fa [main] CMD: ./bin/abpoa.generic ./test_data/seq.fa [abpoa_main] Real time: 0.001 sec; CPU: 0.003 sec; Peak RSS: 0.002 GB. ./bin/abpoa ./test_data/heter.fa > 2cons.fa [main] CMD: ./bin/abpoa.generic ./test_data/heter.fa [abpoa_main] Real time: 0.027 sec; CPU: 0.029 sec; Peak RSS: 0.008 GB. ./bin/abpoa -r1 ./test_data/seq.fa > out.msa [main] CMD: ./bin/abpoa.generic -r1 ./test_data/seq.fa [abpoa_main] Real time: 0.001 sec; CPU: 0.003 sec; Peak RSS: 0.002 GB. ./bin/abpoa -r2 ./test_data/seq.fa > out_cons.msa [main] CMD: ./bin/abpoa.generic -r2 ./test_data/seq.fa [abpoa_main] Real time: 0.001 sec; CPU: 0.003 sec; Peak RSS: 0.002 GB. ./bin/abpoa -r3 ./test_data/seq.fa > out.gfa [main] CMD: ./bin/abpoa.generic -r3 ./test_data/seq.fa [abpoa_main] Real time: 0.001 sec; CPU: 0.003 sec; Peak RSS: 0.002 GB. ./bin/abpoa -r4 ./test_data/seq.fa > out4.gfa [main] CMD: ./bin/abpoa.generic -r4 ./test_data/seq.fa [abpoa_main] Real time: 0.001 sec; CPU: 0.003 sec; Peak RSS: 0.002 GB. cp out.gfa in.gfa cp out.msa in.msa ./bin/abpoa -i in.gfa ./test_data/seq.fa -r3 > out.gfa [main] CMD: ./bin/abpoa.generic -i in.gfa -r3 ./test_data/seq.fa [abpoa_main] Real time: 0.001 sec; CPU: 0.003 sec; Peak RSS: 0.002 GB. ./bin/abpoa -i in.msa ./test_data/seq.fa -r1 > out.msa [main] CMD: ./bin/abpoa.generic -i in.msa -r1 ./test_data/seq.fa [abpoa_main] Real time: 0.001 sec; CPU: 0.003 sec; Peak RSS: 0.002 GB. ./bin/abpoa ./test_data/seq.fa -g poa.png > cons.fa [main] CMD: ./bin/abpoa.generic -g poa.png ./test_data/seq.fa [abpoa_main] Real time: 0.441 sec; CPU: 0.003 sec; Peak RSS: 0.002 GB. ./bin/abpoa ./test_data/heter.fa -d2 [main] CMD: ./bin/abpoa.generic -d2 ./test_data/heter.fa [abpoa_main] Real time: 0.031 sec; CPU: 0.030 sec; Peak RSS: 0.009 GB. >Consensus_sequence_1 0,2,3,4,10,13,14 CCATTCCCACCATCCTTACCATCAACATCACCATCCCCACCATCCCCAACACCATTCCCACCATCCCTACCATCACCATCACCATCCCCACCAACATCCCCACCACCATCCTCACTACCATCCCCACCACCATTTCCACCATTCCCACCACAGTCACCATCACCCCCACCATCCCCATCATCATCCGCACCATCCCCACCATCCCCACCACCATCTCCATTACCATCCCCACCACCATCTCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCTCGTTACCATCCCCACCACCTTTTCCACCATTCCCACCATCTCCAACACCTCCCCCACCATCATCCCCACCATCCCCACCACCTTCTCCACCATCATTCTCACCATCCCCACCACCATCTCCACCACCATTCTCACCATCTCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCATCATCCCCACCATCC >Consensus_sequence_2 1,5,6,7,8,9,11,12 CCATTCCCACCATCCTTACCATCAACATCACCATCCCCACCATCCCCAACACCATTCCCACCATCCCTACCATCACCATCACCATCCCCACCAACATCCCCACCACCATCCTCACTACCATCCCCACCACCATTTCCACCATTCCCACCACAGTCACCATCACCCCCACCATCCCCATCATCATCCGCACCATCCCCACCATCCCCACCACCATCTCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCTCGTTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCTCGTTACCATCCCCACCACCTTTTCCACCATTCCCACCATCATCCCCACCGCCATCCTCGTTACCATCCCCACCACCTTTTCCACCATTCCCACCATCTCCAACACCTCCCCCACCATCATCCCCACCATCCCCACCACCTTCTCCACCATCATTCTCACCATCCCCACCACCATCTCCACCACCATTCTCACCATCTCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCATCATCCCCACCATCC make[1]: Leaving directory '/build/reproducible-path/abpoa-1.5.3' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_ext running install_lib creating /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa creating /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa/usr creating /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa/usr/lib creating /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa/usr/lib/python3.12 creating /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa/usr/lib/python3.12/dist-packages copying /build/reproducible-path/abpoa-1.5.3/.pybuild/cpython3_3.12_pyabpoa/build/pyabpoa.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa/usr/lib/python3.12/dist-packages running install_egg_info running egg_info creating pyabpoa.egg-info writing pyabpoa.egg-info/PKG-INFO writing dependency_links to pyabpoa.egg-info/dependency_links.txt writing top-level names to pyabpoa.egg-info/top_level.txt writing manifest file 'pyabpoa.egg-info/SOURCES.txt' reading manifest file 'pyabpoa.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pyabpoa.egg-info/SOURCES.txt' Copying pyabpoa.egg-info to /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa/usr/lib/python3.12/dist-packages/pyabpoa-1.5.3.egg-info Skipping SOURCES.txt running install_scripts dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild debian/rules override_dh_gencontrol make[1]: Entering directory '/build/reproducible-path/abpoa-1.5.3' dh_gencontrol -- \ -Vsimde:Built-Using="simde (= 0.8.2-1), " make[1]: Leaving directory '/build/reproducible-path/abpoa-1.5.3' dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'abpoa' in '../abpoa_1.5.3-1_arm64.deb'. dpkg-deb: building package 'python3-pyabpoa-dbgsym' in '../python3-pyabpoa-dbgsym_1.5.3-1_arm64.deb'. dpkg-deb: building package 'python3-pyabpoa' in '../python3-pyabpoa_1.5.3-1_arm64.deb'. dpkg-deb: building package 'abpoa-dbgsym' in '../abpoa-dbgsym_1.5.3-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../abpoa_1.5.3-1_arm64.buildinfo dpkg-genchanges --build=binary -O../abpoa_1.5.3-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3811010 and its subdirectories I: Current time: Thu Nov 21 13:01:06 -12 2024 I: pbuilder-time-stamp: 1732237266 Fri Nov 22 01:01:06 UTC 2024 I: Signing ./b1/abpoa_1.5.3-1_arm64.buildinfo as abpoa_1.5.3-1_arm64.buildinfo.asc Fri Nov 22 01:01:06 UTC 2024 I: Signed ./b1/abpoa_1.5.3-1_arm64.buildinfo as ./b1/abpoa_1.5.3-1_arm64.buildinfo.asc Fri Nov 22 01:01:06 UTC 2024 - build #1 for abpoa/trixie/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Fri Nov 22 01:01:06 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-mUI3ntx5, removing. /srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ: total 16 -rw-r--r-- 1 jenkins jenkins 2276 Sep 25 19:22 abpoa_1.5.3-1.dsc drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 01:01 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 00:58 b2 -rw------- 1 jenkins jenkins 3367 Nov 22 00:58 rbuildlog.Imrloqy /srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ/b1: total 1600 -rw-r--r-- 1 jenkins jenkins 463856 Nov 22 01:01 abpoa-dbgsym_1.5.3-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 9836 Nov 22 01:01 abpoa_1.5.3-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2276 Nov 22 01:01 abpoa_1.5.3-1.dsc -rw-r--r-- 1 jenkins jenkins 9156 Nov 22 01:01 abpoa_1.5.3-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 10038 Nov 22 01:01 abpoa_1.5.3-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2095 Nov 22 01:01 abpoa_1.5.3-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 136368 Nov 22 01:01 abpoa_1.5.3-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 1520 Nov 22 01:01 abpoa_1.5.3-1_source.changes -rw-r--r-- 1 jenkins jenkins 163420 Nov 22 01:01 abpoa_1.5.3.orig.tar.gz -rw-r--r-- 1 jenkins jenkins 99431 Nov 22 01:01 build.log -rw-r--r-- 1 jenkins jenkins 572544 Nov 22 01:01 python3-pyabpoa-dbgsym_1.5.3-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 141944 Nov 22 01:01 python3-pyabpoa_1.5.3-1_arm64.deb /srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ/b2: total 0 Fri Nov 22 01:01:07 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Nov 21 12:59:01 -12 2024 I: pbuilder-time-stamp: 1732237141 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [abpoa_1.5.3-1.dsc] I: copying [./abpoa_1.5.3.orig.tar.gz] I: copying [./abpoa_1.5.3-1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Sep 25 19:10:18 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./abpoa_1.5.3-1.dsc: no acceptable signature found dpkg-source: info: extracting abpoa in abpoa-1.5.3 dpkg-source: info: unpacking abpoa_1.5.3.orig.tar.gz dpkg-source: info: unpacking abpoa_1.5.3-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying debian-simde.patch dpkg-source: info: applying buildflags.patch dpkg-source: info: applying baseline.patch dpkg-source: info: applying relax-cython-dep.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3811010/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='070d2486ec0846cd93a8b7be673f8d40' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3811010' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ/pbuilderrc_EuH1 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ/b1 --logfile b1/build.log abpoa_1.5.3-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3811010/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, cython3, graphviz, libsimde-dev, libpython3-all-dev, python3-all-dev:any, python3-setuptools, python3-wheel, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on graphviz; however: Package graphviz is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on libpython3-all-dev; however: Package libpython3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev:any. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-wheel; however: Package python3-wheel is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} graphviz{a} groff-base{a} intltool-debian{a} libabsl20230802{a} libann0{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libbrotli1{a} libcairo2{a} libcdt5{a} libcgraph6{a} libcom-err2{a} libdatrie1{a} libdav1d7{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgd3{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgts-0.7-5t64{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libice6{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblab-gamut1{a} liblerc4{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpathplan4{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libraqm0{a} librav1e0.7{a} libreadline8t64{a} libsharpyuv0{a} libsimde-dev{a} libsm6{a} libsvtav1enc2{a} libthai-data{a} libthai0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libyuv0{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-liberation javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libgts-bin libheif-plugin-aomenc libheif-plugin-x265 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 146 newly installed, 0 to remove and 0 not upgraded. Need to get 58.1 MB of archives. After unpacking 243 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.7-3 [808 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.7-3 [1940 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 12 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.7-3 [1902 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 cython3 arm64 3.0.11+dfsg-1+b1 [2726 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-8 [517 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 45 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 59 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 74.1.2-2 [736 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20241024 [109 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.44-2 [273 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-1.1+b1 [318 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-1.1+b1 [387 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 fontconfig arm64 2.15.0-1.1+b1 [463 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libann0 arm64 1.1.2+doc-9+b2 [24.1 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libcdt5 arm64 2.42.4-2+b1 [39.4 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libcgraph6 arm64 2.42.4-2+b1 [61.3 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libaom3 arm64 3.11.0-1 [1690 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libdav1d7 arm64 1.5.0-1+b1 [248 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libabsl20230802 arm64 20230802.1-4 [432 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libgav1-1 arm64 0.19.0-2+b2 [493 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 librav1e0.7 arm64 0.7.1-7+b2 [653 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libsvtav1enc2 arm64 2.2.1+dfsg-2 [1463 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libyuv0 arm64 0.0.1888.20241107-1 [135 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libavif16 arm64 1.1.1-1 [109 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.4.0-0.1+b1 [112 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libheif-plugin-dav1d arm64 1.19.3-1 [11.2 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libde265-0 arm64 1.0.15-1+b2 [153 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libheif-plugin-libde265 arm64 1.19.3-1 [14.9 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libheif1 arm64 1.19.3-1 [419 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 libimagequant0 arm64 2.18.0-1+b2 [34.6 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libfribidi0 arm64 1.0.15-1 [71.8 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.82.2-2 [1409 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 10.0.1-1 [441 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 libraqm0 arm64 0.10.1-1+b2 [13.8 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.4.0-0.1+b1 [268 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.2-3+b2 [24.4 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 libxpm4 arm64 1:3.5.17-1+b2 [53.2 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 libgd3 arm64 2.3.3-12+b1 [115 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 libgts-0.7-5t64 arm64 0.7.6+darcs121130-5.2+b1 [145 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b2 [27.2 kB] Get: 113 http://deb.debian.org/debian trixie/main arm64 libcairo2 arm64 1.18.2-2 [483 kB] Get: 114 http://deb.debian.org/debian trixie/main arm64 libltdl7 arm64 2.4.7-8 [392 kB] Get: 115 http://deb.debian.org/debian trixie/main arm64 libthai-data all 0.1.29-2 [168 kB] Get: 116 http://deb.debian.org/debian trixie/main arm64 libdatrie1 arm64 0.2.13-3+b1 [37.6 kB] Get: 117 http://deb.debian.org/debian trixie/main arm64 libthai0 arm64 0.1.29-2+b1 [48.4 kB] Get: 118 http://deb.debian.org/debian trixie/main arm64 libpango-1.0-0 arm64 1.54.0+ds-3 [210 kB] Get: 119 http://deb.debian.org/debian trixie/main arm64 libpangoft2-1.0-0 arm64 1.54.0+ds-3 [51.8 kB] Get: 120 http://deb.debian.org/debian trixie/main arm64 libpangocairo-1.0-0 arm64 1.54.0+ds-3 [33.5 kB] Get: 121 http://deb.debian.org/debian trixie/main arm64 libpathplan4 arm64 2.42.4-2+b1 [41.4 kB] Get: 122 http://deb.debian.org/debian trixie/main arm64 libgvc6 arm64 2.42.4-2+b1 [628 kB] Get: 123 http://deb.debian.org/debian trixie/main arm64 libgvpr2 arm64 2.42.4-2+b1 [182 kB] Get: 124 http://deb.debian.org/debian trixie/main arm64 liblab-gamut1 arm64 2.42.4-2+b1 [198 kB] Get: 125 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+23.1 [216 kB] Get: 126 http://deb.debian.org/debian trixie/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get: 127 http://deb.debian.org/debian trixie/main arm64 libsm6 arm64 2:1.2.4-1 [34.2 kB] Get: 128 http://deb.debian.org/debian trixie/main arm64 libxt6t64 arm64 1:1.2.1-1.2+b1 [173 kB] Get: 129 http://deb.debian.org/debian trixie/main arm64 libxmu6 arm64 2:1.1.3-3+b3 [55.6 kB] Get: 130 http://deb.debian.org/debian trixie/main arm64 libxaw7 arm64 2:1.0.16-1 [195 kB] Get: 131 http://deb.debian.org/debian trixie/main arm64 graphviz arm64 2.42.4-2+b1 [574 kB] Get: 132 http://deb.debian.org/debian trixie/main arm64 libexpat1-dev arm64 2.6.4-1 [143 kB] Get: 133 http://deb.debian.org/debian trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 134 http://deb.debian.org/debian trixie/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 135 http://deb.debian.org/debian trixie/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 136 http://deb.debian.org/debian trixie/main arm64 libpython3.12t64 arm64 3.12.7-3 [1982 kB] Get: 137 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 138 http://deb.debian.org/debian trixie/main arm64 libpython3.12-dev arm64 3.12.7-3 [4792 kB] Get: 139 http://deb.debian.org/debian trixie/main arm64 libpython3-dev arm64 3.12.6-1 [9952 B] Get: 140 http://deb.debian.org/debian trixie/main arm64 libpython3-all-dev arm64 3.12.6-1 [1064 B] Get: 141 http://deb.debian.org/debian trixie/main arm64 libsimde-dev all 0.8.2-1 [465 kB] Get: 142 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.12.6-1 [1040 B] Get: 143 http://deb.debian.org/debian trixie/main arm64 python3.12-dev arm64 3.12.7-3 [505 kB] Get: 144 http://deb.debian.org/debian trixie/main arm64 python3-dev arm64 3.12.6-1 [26.1 kB] Get: 145 http://deb.debian.org/debian trixie/main arm64 python3-all-dev arm64 3.12.6-1 [1068 B] Get: 146 http://deb.debian.org/debian trixie/main arm64 python3-wheel all 0.45.0-1 [56.7 kB] Fetched 58.1 MB in 0s (212 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. 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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../14-libreadline8t64_8.2-5_arm64.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/abpoa-1.5.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../abpoa_1.5.3-1_source.changes dpkg-buildpackage: info: source package abpoa dpkg-buildpackage: info: source version 1.5.3-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with=python3 --buildsystem=pybuild debian/rules execute_before_dh_testdir make[1]: Entering directory '/build/reproducible-path/abpoa-1.5.3' # Guard against outdated maintainer manual page. # Hint: help2man does mostly the right thing except for stderr # capture, multiple commands support, and commands description. grep -q 1.5.3 debian/manuals/abpoa.1 make[1]: Leaving directory '/build/reproducible-path/abpoa-1.5.3' dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running clean removing '/build/reproducible-path/abpoa-1.5.3/.pybuild/cpython3_3.12_pyabpoa/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with=python3 --buildsystem=pybuild debian/rules execute_before_dh_testdir make[1]: Entering directory '/build/reproducible-path/abpoa-1.5.3' # Guard against outdated maintainer manual page. # Hint: help2man does mostly the right thing except for stderr # capture, multiple commands support, and commands description. grep -q 1.5.3 debian/manuals/abpoa.1 make[1]: Leaving directory '/build/reproducible-path/abpoa-1.5.3' dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running build running build_ext /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/abpoa-1.5.3/python/pyabpoa.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling python/pyabpoa.pyx because it changed. [1/1] Cythonizing python/pyabpoa.pyx building 'pyabpoa' extension creating build creating build/temp.linux-aarch64-cpython-312 creating build/temp.linux-aarch64-cpython-312/python creating build/temp.linux-aarch64-cpython-312/src aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c python/pyabpoa.c -o build/temp.linux-aarch64-cpython-312/python/pyabpoa.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from python/pyabpoa.c:1285: include/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/abpoa_align.c -o build/temp.linux-aarch64-cpython-312/src/abpoa_align.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/abpoa_seq.h:5, from src/abpoa_align.c:7: src/kseq.h:217:16: warning: ‘kseq_copy’ defined but not used [-Wunused-function] 217 | SCOPE void kseq_copy(kseq_t *seq, kseq_t kseq)\ | ^~~~~~~~~ src/kseq.h:235:9: note: in expansion of macro ‘__KSEQ_COPY’ 235 | __KSEQ_COPY(SCOPE) | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:176:19: warning: ‘kseq_read’ defined but not used [-Wunused-function] 176 | SCOPE int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ src/kseq.h:234:9: note: in expansion of macro ‘__KSEQ_READ’ 234 | __KSEQ_READ(SCOPE) \ | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ In file included from src/abpoa.h:5, from src/abpoa_align.c:4: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/abpoa_graph.c -o build/temp.linux-aarch64-cpython-312/src/abpoa_graph.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/abpoa_seq.h:5, from src/abpoa_graph.c:5: src/kseq.h:217:16: warning: ‘kseq_copy’ defined but not used [-Wunused-function] 217 | SCOPE void kseq_copy(kseq_t *seq, kseq_t kseq)\ | ^~~~~~~~~ src/kseq.h:235:9: note: in expansion of macro ‘__KSEQ_COPY’ 235 | __KSEQ_COPY(SCOPE) | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:176:19: warning: ‘kseq_read’ defined but not used [-Wunused-function] 176 | SCOPE int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ src/kseq.h:234:9: note: in expansion of macro ‘__KSEQ_READ’ 234 | __KSEQ_READ(SCOPE) \ | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:162:20: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 162 | SCOPE void kseq_destroy(kseq_t *ks) \ | ^~~~~~~~~~~~ src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’ 233 | __KSEQ_BASIC(SCOPE, type_t) \ | ^~~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:156:23: warning: ‘kseq_init’ defined but not used [-Wunused-function] 156 | SCOPE kseq_t *kseq_init(type_t fd) \ | ^~~~~~~~~ src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’ 233 | __KSEQ_BASIC(SCOPE, type_t) \ | ^~~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ In file included from src/abpoa.h:5, from src/abpoa_align.h:4, from src/abpoa_graph.c:4: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/abpoa_output.c -o build/temp.linux-aarch64-cpython-312/src/abpoa_output.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/abpoa_seq.h:5, from src/abpoa_output.c:7: src/kseq.h:217:16: warning: ‘kseq_copy’ defined but not used [-Wunused-function] 217 | SCOPE void kseq_copy(kseq_t *seq, kseq_t kseq)\ | ^~~~~~~~~ src/kseq.h:235:9: note: in expansion of macro ‘__KSEQ_COPY’ 235 | __KSEQ_COPY(SCOPE) | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:176:19: warning: ‘kseq_read’ defined but not used [-Wunused-function] 176 | SCOPE int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ src/kseq.h:234:9: note: in expansion of macro ‘__KSEQ_READ’ 234 | __KSEQ_READ(SCOPE) \ | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:162:20: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 162 | SCOPE void kseq_destroy(kseq_t *ks) \ | ^~~~~~~~~~~~ src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’ 233 | __KSEQ_BASIC(SCOPE, type_t) \ | ^~~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:156:23: warning: ‘kseq_init’ defined but not used [-Wunused-function] 156 | SCOPE kseq_t *kseq_init(type_t fd) \ | ^~~~~~~~~ src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’ 233 | __KSEQ_BASIC(SCOPE, type_t) \ | ^~~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ In file included from src/abpoa.h:5, from src/abpoa_output.c:4: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/abpoa_plot.c -o build/temp.linux-aarch64-cpython-312/src/abpoa_plot.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/abpoa.h:5, from src/abpoa_plot.c:3: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/abpoa_seed.c -o build/temp.linux-aarch64-cpython-312/src/abpoa_seed.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_seed.c: In function ‘abpoa_dp_chaining_of_local_chains’: src/abpoa_seed.c:458:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 458 | for (i = _n; i < par_anchors->n; ++i) { | ^ In file included from src/abpoa.h:5, from src/abpoa_seed.c:5: src/simd_instruction.h: At top level: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/abpoa_seq.c -o build/temp.linux-aarch64-cpython-312/src/abpoa_seq.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/abpoa_seq.h:5, from src/abpoa_seq.c:4: src/kseq.h:217:16: warning: ‘kseq_copy’ defined but not used [-Wunused-function] 217 | SCOPE void kseq_copy(kseq_t *seq, kseq_t kseq)\ | ^~~~~~~~~ src/kseq.h:235:9: note: in expansion of macro ‘__KSEQ_COPY’ 235 | __KSEQ_COPY(SCOPE) | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:162:20: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 162 | SCOPE void kseq_destroy(kseq_t *ks) \ | ^~~~~~~~~~~~ src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’ 233 | __KSEQ_BASIC(SCOPE, type_t) \ | ^~~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:156:23: warning: ‘kseq_init’ defined but not used [-Wunused-function] 156 | SCOPE kseq_t *kseq_init(type_t fd) \ | ^~~~~~~~~ src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’ 233 | __KSEQ_BASIC(SCOPE, type_t) \ | ^~~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ In file included from src/abpoa.h:5, from src/abpoa_seq.h:4: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/kalloc.c -o build/temp.linux-aarch64-cpython-312/src/kalloc.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/kstring.c -o build/temp.linux-aarch64-cpython-312/src/kstring.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/kstring.c: In function ‘kvsprintf’: src/kstring.c:15:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 15 | if (l + 1 > s->m - s->l) { | ^ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/simd_abpoa_align.c -o build/temp.linux-aarch64-cpython-312/src/simd_abpoa_align.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/simd_check.c -o build/temp.linux-aarch64-cpython-312/src/simd_check.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/simd_check.c:1: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/utils.c -o build/temp.linux-aarch64-cpython-312/src/utils.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES build/temp.linux-aarch64-cpython-312/python/pyabpoa.o build/temp.linux-aarch64-cpython-312/src/abpoa_align.o build/temp.linux-aarch64-cpython-312/src/abpoa_graph.o build/temp.linux-aarch64-cpython-312/src/abpoa_output.o build/temp.linux-aarch64-cpython-312/src/abpoa_plot.o build/temp.linux-aarch64-cpython-312/src/abpoa_seed.o build/temp.linux-aarch64-cpython-312/src/abpoa_seq.o build/temp.linux-aarch64-cpython-312/src/kalloc.o build/temp.linux-aarch64-cpython-312/src/kstring.o build/temp.linux-aarch64-cpython-312/src/simd_abpoa_align.o build/temp.linux-aarch64-cpython-312/src/simd_check.o build/temp.linux-aarch64-cpython-312/src/utils.o -L/usr/lib/aarch64-linux-gnu -lz -lm -lpthread -o /build/reproducible-path/abpoa-1.5.3/.pybuild/cpython3_3.12_pyabpoa/build/pyabpoa.cpython-312-aarch64-linux-gnu.so debian/rules execute_after_dh_auto_build make[1]: Entering directory '/build/reproducible-path/abpoa-1.5.3' dh_auto_build --buildsystem=makefile -- all make -j12 "INSTALL=install --strip-program=true" all make[2]: Entering directory '/build/reproducible-path/abpoa-1.5.3' cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -march=armv8-a+simd -D__AVX2__ -I./include src/abpoa.c -o src/abpoa.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa_align.c -I./include -o src/abpoa_align.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa_graph.c -I./include -o src/abpoa_graph.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa_plot.c -I./include -o src/abpoa_plot.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa_seed.c -I./include -o src/abpoa_seed.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa_seq.c -I./include -o src/abpoa_seq.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa_output.c -I./include -o src/abpoa_output.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/kalloc.c -I./include -o src/kalloc.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/kstring.c -I./include -o src/kstring.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -march=armv8-a+simd -D__AVX2__ -I./include src/simd_abpoa_align.c -o src/simd_abpoa_align.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -march=armv8-a+simd -D__AVX2__ -I./include src/simd_check.c -o src/simd_check.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/utils.c -I./include -o src/utils.o In file included from /usr/include/string.h:548, from src/abpoa_seed.c:4: In function ‘memset’, inlined from ‘abpoa_dp_chaining’ at src/abpoa_seed.c:549:36: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:59:10: warning: ‘__builtin_memset’ specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 59 | return __builtin___memset_chk (__dest, __ch, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ if [ ! -d ./lib ]; then mkdir ./lib; fi ar -csr lib/libabpoa.a ./src/abpoa_align.o ./src/abpoa_graph.o ./src/abpoa_plot.o ./src/abpoa_seed.o ./src/abpoa_seq.o ./src/abpoa_output.o ./src/kalloc.o ./src/kstring.o ./src/simd_abpoa_align.o ./src/simd_check.o ./src/utils.o if [ ! -d ./bin ]; then mkdir ./bin; fi cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa.o -I./include -L./lib -labpoa -lm -lz -lpthread -o bin/abpoa make[2]: Leaving directory '/build/reproducible-path/abpoa-1.5.3' mv -v bin/abpoa bin/abpoa.generic renamed 'bin/abpoa' -> 'bin/abpoa.generic' cp debian/abpoa-dispatch.sh bin/abpoa make[1]: Leaving directory '/build/reproducible-path/abpoa-1.5.3' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/abpoa-1.5.3' # Tests from the README.md document ./bin/abpoa ./test_data/seq.fa > cons.fa [main] CMD: ./bin/abpoa.generic ./test_data/seq.fa [abpoa_main] Real time: 0.001 sec; CPU: 0.003 sec; Peak RSS: 0.002 GB. ./bin/abpoa ./test_data/heter.fa > 2cons.fa [main] CMD: ./bin/abpoa.generic ./test_data/heter.fa [abpoa_main] Real time: 0.027 sec; CPU: 0.029 sec; Peak RSS: 0.008 GB. ./bin/abpoa -r1 ./test_data/seq.fa > out.msa [main] CMD: ./bin/abpoa.generic -r1 ./test_data/seq.fa [abpoa_main] Real time: 0.001 sec; CPU: 0.003 sec; Peak RSS: 0.002 GB. ./bin/abpoa -r2 ./test_data/seq.fa > out_cons.msa [main] CMD: ./bin/abpoa.generic -r2 ./test_data/seq.fa [abpoa_main] Real time: 0.001 sec; CPU: 0.003 sec; Peak RSS: 0.002 GB. ./bin/abpoa -r3 ./test_data/seq.fa > out.gfa [main] CMD: ./bin/abpoa.generic -r3 ./test_data/seq.fa [abpoa_main] Real time: 0.001 sec; CPU: 0.003 sec; Peak RSS: 0.002 GB. ./bin/abpoa -r4 ./test_data/seq.fa > out4.gfa [main] CMD: ./bin/abpoa.generic -r4 ./test_data/seq.fa [abpoa_main] Real time: 0.001 sec; CPU: 0.003 sec; Peak RSS: 0.002 GB. cp out.gfa in.gfa cp out.msa in.msa ./bin/abpoa -i in.gfa ./test_data/seq.fa -r3 > out.gfa [main] CMD: ./bin/abpoa.generic -i in.gfa -r3 ./test_data/seq.fa [abpoa_main] Real time: 0.001 sec; CPU: 0.003 sec; Peak RSS: 0.002 GB. ./bin/abpoa -i in.msa ./test_data/seq.fa -r1 > out.msa [main] CMD: ./bin/abpoa.generic -i in.msa -r1 ./test_data/seq.fa [abpoa_main] Real time: 0.001 sec; CPU: 0.003 sec; Peak RSS: 0.002 GB. ./bin/abpoa ./test_data/seq.fa -g poa.png > cons.fa [main] CMD: ./bin/abpoa.generic -g poa.png ./test_data/seq.fa [abpoa_main] Real time: 0.441 sec; CPU: 0.003 sec; Peak RSS: 0.002 GB. ./bin/abpoa ./test_data/heter.fa -d2 [main] CMD: ./bin/abpoa.generic -d2 ./test_data/heter.fa [abpoa_main] Real time: 0.031 sec; CPU: 0.030 sec; Peak RSS: 0.009 GB. >Consensus_sequence_1 0,2,3,4,10,13,14 CCATTCCCACCATCCTTACCATCAACATCACCATCCCCACCATCCCCAACACCATTCCCACCATCCCTACCATCACCATCACCATCCCCACCAACATCCCCACCACCATCCTCACTACCATCCCCACCACCATTTCCACCATTCCCACCACAGTCACCATCACCCCCACCATCCCCATCATCATCCGCACCATCCCCACCATCCCCACCACCATCTCCATTACCATCCCCACCACCATCTCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCTCGTTACCATCCCCACCACCTTTTCCACCATTCCCACCATCTCCAACACCTCCCCCACCATCATCCCCACCATCCCCACCACCTTCTCCACCATCATTCTCACCATCCCCACCACCATCTCCACCACCATTCTCACCATCTCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCATCATCCCCACCATCC >Consensus_sequence_2 1,5,6,7,8,9,11,12 CCATTCCCACCATCCTTACCATCAACATCACCATCCCCACCATCCCCAACACCATTCCCACCATCCCTACCATCACCATCACCATCCCCACCAACATCCCCACCACCATCCTCACTACCATCCCCACCACCATTTCCACCATTCCCACCACAGTCACCATCACCCCCACCATCCCCATCATCATCCGCACCATCCCCACCATCCCCACCACCATCTCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCTCGTTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCTCGTTACCATCCCCACCACCTTTTCCACCATTCCCACCATCATCCCCACCGCCATCCTCGTTACCATCCCCACCACCTTTTCCACCATTCCCACCATCTCCAACACCTCCCCCACCATCATCCCCACCATCCCCACCACCTTCTCCACCATCATTCTCACCATCCCCACCACCATCTCCACCACCATTCTCACCATCTCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCATCATCCCCACCATCC make[1]: Leaving directory '/build/reproducible-path/abpoa-1.5.3' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_ext running install_lib creating /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa creating /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa/usr creating /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa/usr/lib creating /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa/usr/lib/python3.12 creating /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa/usr/lib/python3.12/dist-packages copying /build/reproducible-path/abpoa-1.5.3/.pybuild/cpython3_3.12_pyabpoa/build/pyabpoa.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa/usr/lib/python3.12/dist-packages running install_egg_info running egg_info creating pyabpoa.egg-info writing pyabpoa.egg-info/PKG-INFO writing dependency_links to pyabpoa.egg-info/dependency_links.txt writing top-level names to pyabpoa.egg-info/top_level.txt writing manifest file 'pyabpoa.egg-info/SOURCES.txt' reading manifest file 'pyabpoa.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pyabpoa.egg-info/SOURCES.txt' Copying pyabpoa.egg-info to /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa/usr/lib/python3.12/dist-packages/pyabpoa-1.5.3.egg-info Skipping SOURCES.txt running install_scripts dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild debian/rules override_dh_gencontrol make[1]: Entering directory '/build/reproducible-path/abpoa-1.5.3' dh_gencontrol -- \ -Vsimde:Built-Using="simde (= 0.8.2-1), " make[1]: Leaving directory '/build/reproducible-path/abpoa-1.5.3' dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'abpoa' in '../abpoa_1.5.3-1_arm64.deb'. dpkg-deb: building package 'python3-pyabpoa-dbgsym' in '../python3-pyabpoa-dbgsym_1.5.3-1_arm64.deb'. dpkg-deb: building package 'python3-pyabpoa' in '../python3-pyabpoa_1.5.3-1_arm64.deb'. dpkg-deb: building package 'abpoa-dbgsym' in '../abpoa-dbgsym_1.5.3-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../abpoa_1.5.3-1_arm64.buildinfo dpkg-genchanges --build=binary -O../abpoa_1.5.3-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3811010 and its subdirectories I: Current time: Thu Nov 21 13:01:06 -12 2024 I: pbuilder-time-stamp: 1732237266 Fri Nov 22 01:01:08 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink01-arm64.debian.net. Fri Nov 22 01:01:08 UTC 2024 I: Preparing to do remote build '2' on codethink01-arm64.debian.net. Fri Nov 22 01:01:08 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink01-arm64.debian.net is marked as down. Fri Nov 22 01:01:08 UTC 2024 - checking via ssh if codethink01-arm64.debian.net is up. removed '/tmp/read-only-fs-test-ZnwlFv' ==================================================================================== Thu Dec 25 07:24:10 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink01-arm64, called using "2 abpoa trixie /srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ 1.5.3-1" as arguments. Thu Dec 25 07:24:10 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-e8W3F2FU" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Dec 25 07:24:10 UTC 2025 I: Downloading source for trixie/abpoa=1.5.3-1 Reading package lists... NOTICE: 'abpoa' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/abpoa.git Please use: git clone https://salsa.debian.org/med-team/abpoa.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 176 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main abpoa 1.5.3-1 (dsc) [2276 B] Get:2 http://deb.debian.org/debian trixie/main abpoa 1.5.3-1 (tar) [163 kB] Get:3 http://deb.debian.org/debian trixie/main abpoa 1.5.3-1 (diff) [9836 B] Fetched 176 kB in 0s (9347 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'abpoa' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/abpoa.git Please use: git clone https://salsa.debian.org/med-team/abpoa.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 176 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main abpoa 1.5.3-1 (dsc) [2276 B] Get:2 http://deb.debian.org/debian trixie/main abpoa 1.5.3-1 (tar) [163 kB] Get:3 http://deb.debian.org/debian trixie/main abpoa 1.5.3-1 (diff) [9836 B] Fetched 176 kB in 0s (9347 kB/s) Download complete and in download only mode ============================================================================= Re-Building abpoa in trixie on arm64 on codethink01-arm64 now. Date: Thu Dec 25 07:24:10 GMT 2025 Date UTC: Thu Dec 25 07:24:10 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ/pbuilderrc_RkY9 + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' abpoa = debian-installer -o abpoa = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' abpoa = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ/pbuilderrc_RkY9 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ/b2 --logfile b2/build.log abpoa_1.5.3-1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Dec 25 21:24:10 +14 2025 I: pbuilder-time-stamp: 1766647450 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [abpoa_1.5.3-1.dsc] I: copying [./abpoa_1.5.3.orig.tar.gz] I: copying [./abpoa_1.5.3-1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Sep 25 19:10:18 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./abpoa_1.5.3-1.dsc: no acceptable signature found dpkg-source: info: extracting abpoa in abpoa-1.5.3 dpkg-source: info: unpacking abpoa_1.5.3.orig.tar.gz dpkg-source: info: unpacking abpoa_1.5.3-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying debian-simde.patch dpkg-source: info: applying buildflags.patch dpkg-source: info: applying baseline.patch dpkg-source: info: applying relax-cython-dep.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1700251/tmp/hooks/D01_modify_environment starting debug: Running on codethink01-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 25 07:24 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1700251/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1700251/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=4e1dfe374a8243ad82a1c46991e88e11 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1700251 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ/pbuilderrc_RkY9 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ/b2 --logfile b2/build.log abpoa_1.5.3-1.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1700251/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, cython3, graphviz, libsimde-dev, libpython3-all-dev, python3-all-dev:any, python3-setuptools, python3-wheel, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on graphviz; however: Package graphviz is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on libpython3-all-dev; however: Package libpython3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev:any. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-wheel; however: Package python3-wheel is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} graphviz{a} groff-base{a} intltool-debian{a} libabsl20230802{a} libann0{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libbrotli1{a} libcairo2{a} libcdt5{a} libcgraph6{a} libcom-err2{a} libdatrie1{a} libdav1d7{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgd3{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgts-0.7-5t64{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libice6{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblab-gamut1{a} liblerc4{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpathplan4{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libraqm0{a} librav1e0.7{a} libreadline8t64{a} libsharpyuv0{a} libsimde-dev{a} libsm6{a} libsvtav1enc2{a} libthai-data{a} libthai0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libyuv0{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-liberation javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libgts-bin libheif-plugin-aomenc libheif-plugin-x265 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 146 newly installed, 0 to remove and 0 not upgraded. Need to get 58.1 MB of archives. After unpacking 243 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.7-3 [808 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.7-3 [1940 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 12 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.7-3 [1902 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 cython3 arm64 3.0.11+dfsg-1+b1 [2726 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-8 [517 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 45 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 59 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 74.1.2-2 [736 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20241024 [109 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.44-2 [273 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-1.1+b1 [318 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-1.1+b1 [387 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 fontconfig arm64 2.15.0-1.1+b1 [463 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libann0 arm64 1.1.2+doc-9+b2 [24.1 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libcdt5 arm64 2.42.4-2+b1 [39.4 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libcgraph6 arm64 2.42.4-2+b1 [61.3 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libaom3 arm64 3.11.0-1 [1690 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libdav1d7 arm64 1.5.0-1+b1 [248 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libabsl20230802 arm64 20230802.1-4 [432 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libgav1-1 arm64 0.19.0-2+b2 [493 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 librav1e0.7 arm64 0.7.1-7+b2 [653 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libsvtav1enc2 arm64 2.2.1+dfsg-2 [1463 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libyuv0 arm64 0.0.1888.20241107-1 [135 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libavif16 arm64 1.1.1-1 [109 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.4.0-0.1+b1 [112 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libheif-plugin-dav1d arm64 1.19.3-1 [11.2 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libde265-0 arm64 1.0.15-1+b2 [153 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libheif-plugin-libde265 arm64 1.19.3-1 [14.9 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libheif1 arm64 1.19.3-1 [419 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 libimagequant0 arm64 2.18.0-1+b2 [34.6 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libfribidi0 arm64 1.0.15-1 [71.8 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.82.2-2 [1409 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 10.0.1-1 [441 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 libraqm0 arm64 0.10.1-1+b2 [13.8 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.4.0-0.1+b1 [268 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.2-3+b2 [24.4 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 libxpm4 arm64 1:3.5.17-1+b2 [53.2 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 libgd3 arm64 2.3.3-12+b1 [115 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 libgts-0.7-5t64 arm64 0.7.6+darcs121130-5.2+b1 [145 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b2 [27.2 kB] Get: 113 http://deb.debian.org/debian trixie/main arm64 libcairo2 arm64 1.18.2-2 [483 kB] Get: 114 http://deb.debian.org/debian trixie/main arm64 libltdl7 arm64 2.4.7-8 [392 kB] Get: 115 http://deb.debian.org/debian trixie/main arm64 libthai-data all 0.1.29-2 [168 kB] Get: 116 http://deb.debian.org/debian trixie/main arm64 libdatrie1 arm64 0.2.13-3+b1 [37.6 kB] Get: 117 http://deb.debian.org/debian trixie/main arm64 libthai0 arm64 0.1.29-2+b1 [48.4 kB] Get: 118 http://deb.debian.org/debian trixie/main arm64 libpango-1.0-0 arm64 1.54.0+ds-3 [210 kB] Get: 119 http://deb.debian.org/debian trixie/main arm64 libpangoft2-1.0-0 arm64 1.54.0+ds-3 [51.8 kB] Get: 120 http://deb.debian.org/debian trixie/main arm64 libpangocairo-1.0-0 arm64 1.54.0+ds-3 [33.5 kB] Get: 121 http://deb.debian.org/debian trixie/main arm64 libpathplan4 arm64 2.42.4-2+b1 [41.4 kB] Get: 122 http://deb.debian.org/debian trixie/main arm64 libgvc6 arm64 2.42.4-2+b1 [628 kB] Get: 123 http://deb.debian.org/debian trixie/main arm64 libgvpr2 arm64 2.42.4-2+b1 [182 kB] Get: 124 http://deb.debian.org/debian trixie/main arm64 liblab-gamut1 arm64 2.42.4-2+b1 [198 kB] Get: 125 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+23.1 [216 kB] Get: 126 http://deb.debian.org/debian trixie/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get: 127 http://deb.debian.org/debian trixie/main arm64 libsm6 arm64 2:1.2.4-1 [34.2 kB] Get: 128 http://deb.debian.org/debian trixie/main arm64 libxt6t64 arm64 1:1.2.1-1.2+b1 [173 kB] Get: 129 http://deb.debian.org/debian trixie/main arm64 libxmu6 arm64 2:1.1.3-3+b3 [55.6 kB] Get: 130 http://deb.debian.org/debian trixie/main arm64 libxaw7 arm64 2:1.0.16-1 [195 kB] Get: 131 http://deb.debian.org/debian trixie/main arm64 graphviz arm64 2.42.4-2+b1 [574 kB] Get: 132 http://deb.debian.org/debian trixie/main arm64 libexpat1-dev arm64 2.6.4-1 [143 kB] Get: 133 http://deb.debian.org/debian trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 134 http://deb.debian.org/debian trixie/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 135 http://deb.debian.org/debian trixie/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 136 http://deb.debian.org/debian trixie/main arm64 libpython3.12t64 arm64 3.12.7-3 [1982 kB] Get: 137 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 138 http://deb.debian.org/debian trixie/main arm64 libpython3.12-dev arm64 3.12.7-3 [4792 kB] Get: 139 http://deb.debian.org/debian trixie/main arm64 libpython3-dev arm64 3.12.6-1 [9952 B] Get: 140 http://deb.debian.org/debian trixie/main arm64 libpython3-all-dev arm64 3.12.6-1 [1064 B] Get: 141 http://deb.debian.org/debian trixie/main arm64 libsimde-dev all 0.8.2-1 [465 kB] Get: 142 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.12.6-1 [1040 B] Get: 143 http://deb.debian.org/debian trixie/main arm64 python3.12-dev arm64 3.12.7-3 [505 kB] Get: 144 http://deb.debian.org/debian trixie/main arm64 python3-dev arm64 3.12.6-1 [26.1 kB] Get: 145 http://deb.debian.org/debian trixie/main arm64 python3-all-dev arm64 3.12.6-1 [1068 B] Get: 146 http://deb.debian.org/debian trixie/main arm64 python3-wheel all 0.45.0-1 [56.7 kB] Fetched 58.1 MB in 0s (194 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.7-3) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_arm64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:arm64 (3.12.7-3) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20407 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_arm64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../14-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_arm64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21469 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.6-1_arm64.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../003-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../006-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../007-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../008-bsdextrautils_2.40.2-11_arm64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../009-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../010-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../011-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../012-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../013-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../014-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../015-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package cython3. Preparing to unpack .../016-cython3_3.0.11+dfsg-1+b1_arm64.deb ... Unpacking cython3 (3.0.11+dfsg-1+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../017-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../018-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../019-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../020-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../021-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../022-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../023-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../024-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../025-libicu72_72.1-5+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-5+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../026-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../027-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../028-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../029-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../030-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../031-python3-autocommand_2.2.2-3_all.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1700251/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/1700251/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/abpoa-1.5.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../abpoa_1.5.3-1_source.changes dpkg-buildpackage: info: source package abpoa dpkg-buildpackage: info: source version 1.5.3-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with=python3 --buildsystem=pybuild debian/rules execute_before_dh_testdir make[1]: Entering directory '/build/reproducible-path/abpoa-1.5.3' # Guard against outdated maintainer manual page. # Hint: help2man does mostly the right thing except for stderr # capture, multiple commands support, and commands description. grep -q 1.5.3 debian/manuals/abpoa.1 make[1]: Leaving directory '/build/reproducible-path/abpoa-1.5.3' dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running clean removing '/build/reproducible-path/abpoa-1.5.3/.pybuild/cpython3_3.12_pyabpoa/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with=python3 --buildsystem=pybuild debian/rules execute_before_dh_testdir make[1]: Entering directory '/build/reproducible-path/abpoa-1.5.3' # Guard against outdated maintainer manual page. # Hint: help2man does mostly the right thing except for stderr # capture, multiple commands support, and commands description. grep -q 1.5.3 debian/manuals/abpoa.1 make[1]: Leaving directory '/build/reproducible-path/abpoa-1.5.3' dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running build running build_ext /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/abpoa-1.5.3/python/pyabpoa.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling python/pyabpoa.pyx because it changed. [1/1] Cythonizing python/pyabpoa.pyx building 'pyabpoa' extension creating build creating build/temp.linux-aarch64-cpython-312 creating build/temp.linux-aarch64-cpython-312/python creating build/temp.linux-aarch64-cpython-312/src aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c python/pyabpoa.c -o build/temp.linux-aarch64-cpython-312/python/pyabpoa.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from python/pyabpoa.c:1285: include/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/abpoa_align.c -o build/temp.linux-aarch64-cpython-312/src/abpoa_align.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/abpoa_seq.h:5, from src/abpoa_align.c:7: src/kseq.h:217:16: warning: ‘kseq_copy’ defined but not used [-Wunused-function] 217 | SCOPE void kseq_copy(kseq_t *seq, kseq_t kseq)\ | ^~~~~~~~~ src/kseq.h:235:9: note: in expansion of macro ‘__KSEQ_COPY’ 235 | __KSEQ_COPY(SCOPE) | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:176:19: warning: ‘kseq_read’ defined but not used [-Wunused-function] 176 | SCOPE int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ src/kseq.h:234:9: note: in expansion of macro ‘__KSEQ_READ’ 234 | __KSEQ_READ(SCOPE) \ | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ In file included from src/abpoa.h:5, from src/abpoa_align.c:4: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/abpoa_graph.c -o build/temp.linux-aarch64-cpython-312/src/abpoa_graph.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/abpoa_seq.h:5, from src/abpoa_graph.c:5: src/kseq.h:217:16: warning: ‘kseq_copy’ defined but not used [-Wunused-function] 217 | SCOPE void kseq_copy(kseq_t *seq, kseq_t kseq)\ | ^~~~~~~~~ src/kseq.h:235:9: note: in expansion of macro ‘__KSEQ_COPY’ 235 | __KSEQ_COPY(SCOPE) | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:176:19: warning: ‘kseq_read’ defined but not used [-Wunused-function] 176 | SCOPE int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ src/kseq.h:234:9: note: in expansion of macro ‘__KSEQ_READ’ 234 | __KSEQ_READ(SCOPE) \ | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:162:20: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 162 | SCOPE void kseq_destroy(kseq_t *ks) \ | ^~~~~~~~~~~~ src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’ 233 | __KSEQ_BASIC(SCOPE, type_t) \ | ^~~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:156:23: warning: ‘kseq_init’ defined but not used [-Wunused-function] 156 | SCOPE kseq_t *kseq_init(type_t fd) \ | ^~~~~~~~~ src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’ 233 | __KSEQ_BASIC(SCOPE, type_t) \ | ^~~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ In file included from src/abpoa.h:5, from src/abpoa_align.h:4, from src/abpoa_graph.c:4: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/abpoa_output.c -o build/temp.linux-aarch64-cpython-312/src/abpoa_output.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/abpoa_seq.h:5, from src/abpoa_output.c:7: src/kseq.h:217:16: warning: ‘kseq_copy’ defined but not used [-Wunused-function] 217 | SCOPE void kseq_copy(kseq_t *seq, kseq_t kseq)\ | ^~~~~~~~~ src/kseq.h:235:9: note: in expansion of macro ‘__KSEQ_COPY’ 235 | __KSEQ_COPY(SCOPE) | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:176:19: warning: ‘kseq_read’ defined but not used [-Wunused-function] 176 | SCOPE int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ src/kseq.h:234:9: note: in expansion of macro ‘__KSEQ_READ’ 234 | __KSEQ_READ(SCOPE) \ | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:162:20: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 162 | SCOPE void kseq_destroy(kseq_t *ks) \ | ^~~~~~~~~~~~ src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’ 233 | __KSEQ_BASIC(SCOPE, type_t) \ | ^~~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:156:23: warning: ‘kseq_init’ defined but not used [-Wunused-function] 156 | SCOPE kseq_t *kseq_init(type_t fd) \ | ^~~~~~~~~ src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’ 233 | __KSEQ_BASIC(SCOPE, type_t) \ | ^~~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ In file included from src/abpoa.h:5, from src/abpoa_output.c:4: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/abpoa_plot.c -o build/temp.linux-aarch64-cpython-312/src/abpoa_plot.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/abpoa.h:5, from src/abpoa_plot.c:3: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/abpoa_seed.c -o build/temp.linux-aarch64-cpython-312/src/abpoa_seed.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/abpoa_seed.c: In function ‘abpoa_dp_chaining_of_local_chains’: src/abpoa_seed.c:458:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 458 | for (i = _n; i < par_anchors->n; ++i) { | ^ In file included from src/abpoa.h:5, from src/abpoa_seed.c:5: src/simd_instruction.h: At top level: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/abpoa_seq.c -o build/temp.linux-aarch64-cpython-312/src/abpoa_seq.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/abpoa_seq.h:5, from src/abpoa_seq.c:4: src/kseq.h:217:16: warning: ‘kseq_copy’ defined but not used [-Wunused-function] 217 | SCOPE void kseq_copy(kseq_t *seq, kseq_t kseq)\ | ^~~~~~~~~ src/kseq.h:235:9: note: in expansion of macro ‘__KSEQ_COPY’ 235 | __KSEQ_COPY(SCOPE) | ^~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:162:20: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 162 | SCOPE void kseq_destroy(kseq_t *ks) \ | ^~~~~~~~~~~~ src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’ 233 | __KSEQ_BASIC(SCOPE, type_t) \ | ^~~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ src/kseq.h:156:23: warning: ‘kseq_init’ defined but not used [-Wunused-function] 156 | SCOPE kseq_t *kseq_init(type_t fd) \ | ^~~~~~~~~ src/kseq.h:233:9: note: in expansion of macro ‘__KSEQ_BASIC’ 233 | __KSEQ_BASIC(SCOPE, type_t) \ | ^~~~~~~~~~~~ src/kseq.h:237:35: note: in expansion of macro ‘KSEQ_INIT2’ 237 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) | ^~~~~~~~~~ src/abpoa_seq.h:7:1: note: in expansion of macro ‘KSEQ_INIT’ 7 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ In file included from src/abpoa.h:5, from src/abpoa_seq.h:4: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/kalloc.c -o build/temp.linux-aarch64-cpython-312/src/kalloc.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/kstring.c -o build/temp.linux-aarch64-cpython-312/src/kstring.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES src/kstring.c: In function ‘kvsprintf’: src/kstring.c:15:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 15 | if (l + 1 > s->m - s->l) { | ^ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/simd_abpoa_align.c -o build/temp.linux-aarch64-cpython-312/src/simd_abpoa_align.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/simd_check.c -o build/temp.linux-aarch64-cpython-312/src/simd_check.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES In file included from src/simd_check.c:1: src/simd_instruction.h:614:14: warning: ‘SIMDMalloc’ defined but not used [-Wunused-function] 614 | static void *SIMDMalloc(size_t size, size_t align) { | ^~~~~~~~~~ aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -fPIC -Iinclude/ -I/usr/include/python3.12 -c src/utils.c -o build/temp.linux-aarch64-cpython-312/src/utils.o -O3 -Wno-misleading-indentation -Wno-error=declaration-after-statement -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES build/temp.linux-aarch64-cpython-312/python/pyabpoa.o build/temp.linux-aarch64-cpython-312/src/abpoa_align.o build/temp.linux-aarch64-cpython-312/src/abpoa_graph.o build/temp.linux-aarch64-cpython-312/src/abpoa_output.o build/temp.linux-aarch64-cpython-312/src/abpoa_plot.o build/temp.linux-aarch64-cpython-312/src/abpoa_seed.o build/temp.linux-aarch64-cpython-312/src/abpoa_seq.o build/temp.linux-aarch64-cpython-312/src/kalloc.o build/temp.linux-aarch64-cpython-312/src/kstring.o build/temp.linux-aarch64-cpython-312/src/simd_abpoa_align.o build/temp.linux-aarch64-cpython-312/src/simd_check.o build/temp.linux-aarch64-cpython-312/src/utils.o -L/usr/lib/aarch64-linux-gnu -lz -lm -lpthread -o /build/reproducible-path/abpoa-1.5.3/.pybuild/cpython3_3.12_pyabpoa/build/pyabpoa.cpython-312-aarch64-linux-gnu.so debian/rules execute_after_dh_auto_build make[1]: Entering directory '/build/reproducible-path/abpoa-1.5.3' dh_auto_build --buildsystem=makefile -- all make -j12 "INSTALL=install --strip-program=true" all make[2]: Entering directory '/build/reproducible-path/abpoa-1.5.3' cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -march=armv8-a+simd -D__AVX2__ -I./include src/abpoa.c -o src/abpoa.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa_align.c -I./include -o src/abpoa_align.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa_graph.c -I./include -o src/abpoa_graph.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa_plot.c -I./include -o src/abpoa_plot.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa_seed.c -I./include -o src/abpoa_seed.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa_seq.c -I./include -o src/abpoa_seq.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa_output.c -I./include -o src/abpoa_output.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/kalloc.c -I./include -o src/kalloc.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/kstring.c -I./include -o src/kstring.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -march=armv8-a+simd -D__AVX2__ -I./include src/simd_abpoa_align.c -o src/simd_abpoa_align.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now -march=armv8-a+simd -D__AVX2__ -I./include src/simd_check.c -o src/simd_check.o cc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/utils.c -I./include -o src/utils.o In file included from /usr/include/string.h:548, from src/abpoa_seed.c:4: In function ‘memset’, inlined from ‘abpoa_dp_chaining’ at src/abpoa_seed.c:549:36: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:59:10: warning: ‘__builtin_memset’ specified size between 18446744071562067968 and 18446744073709551615 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 59 | return __builtin___memset_chk (__dest, __ch, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ if [ ! -d ./lib ]; then mkdir ./lib; fi ar -csr lib/libabpoa.a ./src/abpoa_align.o ./src/abpoa_graph.o ./src/abpoa_plot.o ./src/abpoa_seed.o ./src/abpoa_seq.o ./src/abpoa_output.o ./src/kalloc.o ./src/kstring.o ./src/simd_abpoa_align.o ./src/simd_check.o ./src/utils.o if [ ! -d ./bin ]; then mkdir ./bin; fi cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/abpoa-1.5.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSIMDE_ENABLE_OPENMP -DSIMDE_ENABLE_NATIVE_ALIASES -O3 -Wall -Wno-unused-function -Wno-misleading-indentation -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -Wl,-z,relro -Wl,-z,now src/abpoa.o -I./include -L./lib -labpoa -lm -lz -lpthread -o bin/abpoa make[2]: Leaving directory '/build/reproducible-path/abpoa-1.5.3' mv -v bin/abpoa bin/abpoa.generic renamed 'bin/abpoa' -> 'bin/abpoa.generic' cp debian/abpoa-dispatch.sh bin/abpoa make[1]: Leaving directory '/build/reproducible-path/abpoa-1.5.3' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/abpoa-1.5.3' # Tests from the README.md document ./bin/abpoa ./test_data/seq.fa > cons.fa [main] CMD: ./bin/abpoa.generic ./test_data/seq.fa [abpoa_main] Real time: 0.003 sec; CPU: 0.011 sec; Peak RSS: 0.003 GB. ./bin/abpoa ./test_data/heter.fa > 2cons.fa [main] CMD: ./bin/abpoa.generic ./test_data/heter.fa [abpoa_main] Real time: 0.063 sec; CPU: 0.071 sec; Peak RSS: 0.009 GB. ./bin/abpoa -r1 ./test_data/seq.fa > out.msa [main] CMD: ./bin/abpoa.generic -r1 ./test_data/seq.fa [abpoa_main] Real time: 0.002 sec; CPU: 0.011 sec; Peak RSS: 0.003 GB. ./bin/abpoa -r2 ./test_data/seq.fa > out_cons.msa [main] CMD: ./bin/abpoa.generic -r2 ./test_data/seq.fa [abpoa_main] Real time: 0.002 sec; CPU: 0.010 sec; Peak RSS: 0.003 GB. ./bin/abpoa -r3 ./test_data/seq.fa > out.gfa [main] CMD: ./bin/abpoa.generic -r3 ./test_data/seq.fa [abpoa_main] Real time: 0.002 sec; CPU: 0.010 sec; Peak RSS: 0.003 GB. ./bin/abpoa -r4 ./test_data/seq.fa > out4.gfa [main] CMD: ./bin/abpoa.generic -r4 ./test_data/seq.fa [abpoa_main] Real time: 0.003 sec; CPU: 0.011 sec; Peak RSS: 0.003 GB. cp out.gfa in.gfa cp out.msa in.msa ./bin/abpoa -i in.gfa ./test_data/seq.fa -r3 > out.gfa [main] CMD: ./bin/abpoa.generic -i in.gfa -r3 ./test_data/seq.fa [abpoa_main] Real time: 0.003 sec; CPU: 0.012 sec; Peak RSS: 0.003 GB. ./bin/abpoa -i in.msa ./test_data/seq.fa -r1 > out.msa [main] CMD: ./bin/abpoa.generic -i in.msa -r1 ./test_data/seq.fa [abpoa_main] Real time: 0.003 sec; CPU: 0.011 sec; Peak RSS: 0.003 GB. ./bin/abpoa ./test_data/seq.fa -g poa.png > cons.fa [main] CMD: ./bin/abpoa.generic -g poa.png ./test_data/seq.fa [abpoa_main] Real time: 0.485 sec; CPU: 0.011 sec; Peak RSS: 0.003 GB. ./bin/abpoa ./test_data/heter.fa -d2 [main] CMD: ./bin/abpoa.generic -d2 ./test_data/heter.fa [abpoa_main] Real time: 0.029 sec; CPU: 0.033 sec; Peak RSS: 0.010 GB. >Consensus_sequence_1 0,2,3,4,10,13,14 CCATTCCCACCATCCTTACCATCAACATCACCATCCCCACCATCCCCAACACCATTCCCACCATCCCTACCATCACCATCACCATCCCCACCAACATCCCCACCACCATCCTCACTACCATCCCCACCACCATTTCCACCATTCCCACCACAGTCACCATCACCCCCACCATCCCCATCATCATCCGCACCATCCCCACCATCCCCACCACCATCTCCATTACCATCCCCACCACCATCTCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCTCGTTACCATCCCCACCACCTTTTCCACCATTCCCACCATCTCCAACACCTCCCCCACCATCATCCCCACCATCCCCACCACCTTCTCCACCATCATTCTCACCATCCCCACCACCATCTCCACCACCATTCTCACCATCTCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCATCATCCCCACCATCC >Consensus_sequence_2 1,5,6,7,8,9,11,12 CCATTCCCACCATCCTTACCATCAACATCACCATCCCCACCATCCCCAACACCATTCCCACCATCCCTACCATCACCATCACCATCCCCACCAACATCCCCACCACCATCCTCACTACCATCCCCACCACCATTTCCACCATTCCCACCACAGTCACCATCACCCCCACCATCCCCATCATCATCCGCACCATCCCCACCATCCCCACCACCATCTCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCTCGTTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCTCGTTACCATCCCCACCACCTTTTCCACCATTCCCACCATCATCCCCACCGCCATCCTCGTTACCATCCCCACCACCTTTTCCACCATTCCCACCATCTCCAACACCTCCCCCACCATCATCCCCACCATCCCCACCACCTTCTCCACCATCATTCTCACCATCCCCACCACCATCTCCACCACCATTCTCACCATCTCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCATCATCCCCACCATCC make[1]: Leaving directory '/build/reproducible-path/abpoa-1.5.3' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_ext running install_lib creating /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa creating /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa/usr creating /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa/usr/lib creating /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa/usr/lib/python3.12 creating /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa/usr/lib/python3.12/dist-packages copying /build/reproducible-path/abpoa-1.5.3/.pybuild/cpython3_3.12_pyabpoa/build/pyabpoa.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa/usr/lib/python3.12/dist-packages running install_egg_info running egg_info creating pyabpoa.egg-info writing pyabpoa.egg-info/PKG-INFO writing dependency_links to pyabpoa.egg-info/dependency_links.txt writing top-level names to pyabpoa.egg-info/top_level.txt writing manifest file 'pyabpoa.egg-info/SOURCES.txt' reading manifest file 'pyabpoa.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pyabpoa.egg-info/SOURCES.txt' Copying pyabpoa.egg-info to /build/reproducible-path/abpoa-1.5.3/debian/python3-pyabpoa/usr/lib/python3.12/dist-packages/pyabpoa-1.5.3.egg-info Skipping SOURCES.txt running install_scripts dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild debian/rules override_dh_gencontrol make[1]: Entering directory '/build/reproducible-path/abpoa-1.5.3' dh_gencontrol -- \ -Vsimde:Built-Using="simde (= 0.8.2-1), " make[1]: Leaving directory '/build/reproducible-path/abpoa-1.5.3' dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'abpoa' in '../abpoa_1.5.3-1_arm64.deb'. dpkg-deb: building package 'abpoa-dbgsym' in '../abpoa-dbgsym_1.5.3-1_arm64.deb'. dpkg-deb: building package 'python3-pyabpoa' in '../python3-pyabpoa_1.5.3-1_arm64.deb'. dpkg-deb: building package 'python3-pyabpoa-dbgsym' in '../python3-pyabpoa-dbgsym_1.5.3-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../abpoa_1.5.3-1_arm64.buildinfo dpkg-genchanges --build=binary -O../abpoa_1.5.3-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1700251/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1700251/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1700251 and its subdirectories I: Current time: Thu Dec 25 21:26:20 +14 2025 I: pbuilder-time-stamp: 1766647580 + false + set +x Thu Dec 25 07:26:20 UTC 2025 I: Signing ./b2/abpoa_1.5.3-1_arm64.buildinfo as abpoa_1.5.3-1_arm64.buildinfo.asc Thu Dec 25 07:26:20 UTC 2025 I: Signed ./b2/abpoa_1.5.3-1_arm64.buildinfo as ./b2/abpoa_1.5.3-1_arm64.buildinfo.asc Thu Dec 25 07:26:20 UTC 2025 - build #2 for abpoa/trixie/arm64 on codethink01-arm64 done. Starting cleanup. All cleanup done. Thu Dec 25 07:26:20 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-e8W3F2FU, removing. /srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ: total 120 -rw-r--r-- 1 jenkins jenkins 2276 Sep 25 19:22 abpoa_1.5.3-1.dsc drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 01:01 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 01:03 b2 -rw------- 1 jenkins jenkins 103099 Nov 22 01:01 rbuildlog.Imrloqy /srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ/b1: total 1624 -rw-r--r-- 1 jenkins jenkins 463856 Nov 22 01:01 abpoa-dbgsym_1.5.3-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 9836 Nov 22 01:01 abpoa_1.5.3-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2276 Nov 22 01:01 abpoa_1.5.3-1.dsc -rw-r--r-- 1 jenkins jenkins 9156 Nov 22 01:01 abpoa_1.5.3-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 10038 Nov 22 01:01 abpoa_1.5.3-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2095 Nov 22 01:01 abpoa_1.5.3-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 136368 Nov 22 01:01 abpoa_1.5.3-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 1520 Nov 22 01:01 abpoa_1.5.3-1_source.changes -rw-r--r-- 1 jenkins jenkins 163420 Nov 22 01:01 abpoa_1.5.3.orig.tar.gz -rw-r--r-- 1 jenkins jenkins 99431 Nov 22 01:01 build.log -rw-r--r-- 1 jenkins jenkins 572544 Nov 22 01:01 python3-pyabpoa-dbgsym_1.5.3-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 141944 Nov 22 01:01 python3-pyabpoa_1.5.3-1_arm64.deb /srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ/b2: total 1600 -rw-r--r-- 1 jenkins jenkins 463856 Nov 22 01:03 abpoa-dbgsym_1.5.3-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 9836 Nov 22 01:03 abpoa_1.5.3-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2276 Nov 22 01:03 abpoa_1.5.3-1.dsc -rw-r--r-- 1 jenkins jenkins 9156 Nov 22 01:03 abpoa_1.5.3-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 10038 Nov 22 01:03 abpoa_1.5.3-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2095 Nov 22 01:03 abpoa_1.5.3-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 136368 Nov 22 01:03 abpoa_1.5.3-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 1520 Nov 22 01:03 abpoa_1.5.3-1_source.changes -rw-r--r-- 1 jenkins jenkins 163420 Nov 22 01:03 abpoa_1.5.3.orig.tar.gz -rw-r--r-- 1 jenkins jenkins 101374 Nov 22 01:03 build.log -rw-r--r-- 1 jenkins jenkins 572544 Nov 22 01:03 python3-pyabpoa-dbgsym_1.5.3-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 141944 Nov 22 01:03 python3-pyabpoa_1.5.3-1_arm64.deb Fri Nov 22 01:03:23 UTC 2024 I: Deleting $TMPDIR on codethink01-arm64.debian.net. Fri Nov 22 01:03:24 UTC 2024 I: abpoa_1.5.3-1_arm64.changes: Format: 1.8 Date: Wed, 25 Sep 2024 20:52:28 +0200 Source: abpoa Binary: abpoa abpoa-dbgsym python3-pyabpoa python3-pyabpoa-dbgsym Architecture: arm64 Version: 1.5.3-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: abpoa - adaptive banded Partial Order Alignment python3-pyabpoa - adaptive banded Partial Order Alignment - python3 module Changes: abpoa (1.5.3-1) unstable; urgency=medium . * New upstream version 1.5.3 * relax-cython-dep.patch: unfuzz. * d/m/abpoa.1: bumped date and version. Otherwise no changes needed. Checksums-Sha1: dd0ea2f076c9b9f1b8a035254f4177a66b654165 463856 abpoa-dbgsym_1.5.3-1_arm64.deb 71867a5dba8e50b714e5b7480525297748057dc2 9156 abpoa_1.5.3-1_arm64.buildinfo e67b8e053e4f84a603d2d91f139652e3232ef116 136368 abpoa_1.5.3-1_arm64.deb eaaec2e1416c45adaf2883d7310f9984c1bd4d87 572544 python3-pyabpoa-dbgsym_1.5.3-1_arm64.deb d4b7b234396e3f6d1a9c95a98365b3091ddc81cc 141944 python3-pyabpoa_1.5.3-1_arm64.deb Checksums-Sha256: 694de4857287e87a2525e78be30bd14477d6f636bd4622c69a8ab9b6ce8754b1 463856 abpoa-dbgsym_1.5.3-1_arm64.deb 33508a00e06da52e9dfc49341b0d82bfddc311d608c4ecadcaa74f8e8ccd50aa 9156 abpoa_1.5.3-1_arm64.buildinfo 06885579b7f6c92ea794e580450c5ed6d6dcd6e749d080c47be8f8b9e8f87f6a 136368 abpoa_1.5.3-1_arm64.deb 1912980081b2a9a516b19d4eda60acc5a9a07e6940ffab32c648c60a4a174faf 572544 python3-pyabpoa-dbgsym_1.5.3-1_arm64.deb 6e176a3a168e0b069f288972dcc8ec02736e5112ac4252c8df8aebcd3f7e8cd4 141944 python3-pyabpoa_1.5.3-1_arm64.deb Files: 7ae409b3271f5334df8a70292a9d96db 463856 debug optional abpoa-dbgsym_1.5.3-1_arm64.deb 4965618a40831cf1ad545d543f415f24 9156 science optional abpoa_1.5.3-1_arm64.buildinfo 1598d8da5152a352858e4e8ef51fa1d4 136368 science optional abpoa_1.5.3-1_arm64.deb d899dda4000364b23853c21d62760970 572544 debug optional python3-pyabpoa-dbgsym_1.5.3-1_arm64.deb 1d9ff0c401ee073ac2d0400a5a908380 141944 python optional python3-pyabpoa_1.5.3-1_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/abpoa_1.5.3-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/abpoa_1.5.3-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/abpoa_1.5.3-1.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/abpoa_1.5.3-1.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/arm64/abpoa_1.5.3-1_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/abpoa_1.5.3-1.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-11-22 01:01:07.629139961 +0000 +++ b2/build.log 2024-11-22 01:03:22.731011786 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Nov 21 12:59:01 -12 2024 -I: pbuilder-time-stamp: 1732237141 +I: Current time: Thu Dec 25 21:24:10 +14 2025 +I: pbuilder-time-stamp: 1766647450 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -31,52 +31,84 @@ dpkg-source: info: applying relax-cython-dep.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3811010/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1700251/tmp/hooks/D01_modify_environment starting +debug: Running on codethink01-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 25 07:24 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1700251/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1700251/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='070d2486ec0846cd93a8b7be673f8d40' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3811010' - PS1='# ' - PS2='> ' + INVOCATION_ID=4e1dfe374a8243ad82a1c46991e88e11 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1700251 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ/pbuilderrc_EuH1 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ/b1 --logfile b1/build.log abpoa_1.5.3-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ/pbuilderrc_RkY9 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ/b2 --logfile b2/build.log abpoa_1.5.3-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3811010/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1700251/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -275,7 +307,7 @@ Get: 144 http://deb.debian.org/debian trixie/main arm64 python3-dev arm64 3.12.6-1 [26.1 kB] Get: 145 http://deb.debian.org/debian trixie/main arm64 python3-all-dev arm64 3.12.6-1 [1068 B] Get: 146 http://deb.debian.org/debian trixie/main arm64 python3-wheel all 0.45.0-1 [56.7 kB] -Fetched 58.1 MB in 0s (212 MB/s) +Fetched 58.1 MB in 0s (194 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20087 files and directories currently installed.) @@ -766,8 +798,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Nov 22 00:59:25 UTC 2024. -Universal Time is now: Fri Nov 22 00:59:25 UTC 2024. +Local time is now: Thu Dec 25 07:24:35 UTC 2025. +Universal Time is now: Thu Dec 25 07:24:35 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -892,7 +924,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/abpoa-1.5.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../abpoa_1.5.3-1_source.changes +I: user script /srv/workspace/pbuilder/1700251/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/1700251/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/abpoa-1.5.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../abpoa_1.5.3-1_source.changes dpkg-buildpackage: info: source package abpoa dpkg-buildpackage: info: source version 1.5.3-1 dpkg-buildpackage: info: source distribution unstable @@ -1238,36 +1274,36 @@ # Tests from the README.md document ./bin/abpoa ./test_data/seq.fa > cons.fa [main] CMD: ./bin/abpoa.generic ./test_data/seq.fa -[abpoa_main] Real time: 0.001 sec; CPU: 0.003 sec; Peak RSS: 0.002 GB. +[abpoa_main] Real time: 0.003 sec; CPU: 0.011 sec; Peak RSS: 0.003 GB. ./bin/abpoa ./test_data/heter.fa > 2cons.fa [main] CMD: ./bin/abpoa.generic ./test_data/heter.fa -[abpoa_main] Real time: 0.027 sec; CPU: 0.029 sec; Peak RSS: 0.008 GB. +[abpoa_main] Real time: 0.063 sec; CPU: 0.071 sec; Peak RSS: 0.009 GB. ./bin/abpoa -r1 ./test_data/seq.fa > out.msa [main] CMD: ./bin/abpoa.generic -r1 ./test_data/seq.fa -[abpoa_main] Real time: 0.001 sec; CPU: 0.003 sec; Peak RSS: 0.002 GB. +[abpoa_main] Real time: 0.002 sec; CPU: 0.011 sec; Peak RSS: 0.003 GB. ./bin/abpoa -r2 ./test_data/seq.fa > out_cons.msa [main] CMD: ./bin/abpoa.generic -r2 ./test_data/seq.fa -[abpoa_main] Real time: 0.001 sec; CPU: 0.003 sec; Peak RSS: 0.002 GB. +[abpoa_main] Real time: 0.002 sec; CPU: 0.010 sec; Peak RSS: 0.003 GB. ./bin/abpoa -r3 ./test_data/seq.fa > out.gfa [main] CMD: ./bin/abpoa.generic -r3 ./test_data/seq.fa -[abpoa_main] Real time: 0.001 sec; CPU: 0.003 sec; Peak RSS: 0.002 GB. +[abpoa_main] Real time: 0.002 sec; CPU: 0.010 sec; Peak RSS: 0.003 GB. ./bin/abpoa -r4 ./test_data/seq.fa > out4.gfa [main] CMD: ./bin/abpoa.generic -r4 ./test_data/seq.fa -[abpoa_main] Real time: 0.001 sec; CPU: 0.003 sec; Peak RSS: 0.002 GB. +[abpoa_main] Real time: 0.003 sec; CPU: 0.011 sec; Peak RSS: 0.003 GB. cp out.gfa in.gfa cp out.msa in.msa ./bin/abpoa -i in.gfa ./test_data/seq.fa -r3 > out.gfa [main] CMD: ./bin/abpoa.generic -i in.gfa -r3 ./test_data/seq.fa -[abpoa_main] Real time: 0.001 sec; CPU: 0.003 sec; Peak RSS: 0.002 GB. +[abpoa_main] Real time: 0.003 sec; CPU: 0.012 sec; Peak RSS: 0.003 GB. ./bin/abpoa -i in.msa ./test_data/seq.fa -r1 > out.msa [main] CMD: ./bin/abpoa.generic -i in.msa -r1 ./test_data/seq.fa -[abpoa_main] Real time: 0.001 sec; CPU: 0.003 sec; Peak RSS: 0.002 GB. +[abpoa_main] Real time: 0.003 sec; CPU: 0.011 sec; Peak RSS: 0.003 GB. ./bin/abpoa ./test_data/seq.fa -g poa.png > cons.fa [main] CMD: ./bin/abpoa.generic -g poa.png ./test_data/seq.fa -[abpoa_main] Real time: 0.441 sec; CPU: 0.003 sec; Peak RSS: 0.002 GB. +[abpoa_main] Real time: 0.485 sec; CPU: 0.011 sec; Peak RSS: 0.003 GB. ./bin/abpoa ./test_data/heter.fa -d2 [main] CMD: ./bin/abpoa.generic -d2 ./test_data/heter.fa -[abpoa_main] Real time: 0.031 sec; CPU: 0.030 sec; Peak RSS: 0.009 GB. +[abpoa_main] Real time: 0.029 sec; CPU: 0.033 sec; Peak RSS: 0.010 GB. >Consensus_sequence_1 0,2,3,4,10,13,14 CCATTCCCACCATCCTTACCATCAACATCACCATCCCCACCATCCCCAACACCATTCCCACCATCCCTACCATCACCATCACCATCCCCACCAACATCCCCACCACCATCCTCACTACCATCCCCACCACCATTTCCACCATTCCCACCACAGTCACCATCACCCCCACCATCCCCATCATCATCCGCACCATCCCCACCATCCCCACCACCATCTCCATTACCATCCCCACCACCATCTCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATCCCCATTACCATCCCCACCACCATTTCCACCATTCCCACCATCATCCCCACCACCATCCTCGTTACCATCCCCACCACCTTTTCCACCATTCCCACCATCTCCAACACCTCCCCCACCATCATCCCCACCATCCCCACCACCTTCTCCACCATCATTCTCACCATCCCCACCACCATCTCCACCACCATTCTCACCATCTCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCAACATCCCCACCATCCCCACCCCCATGCCCACCATCATCCCCACCATCC >Consensus_sequence_2 1,5,6,7,8,9,11,12 @@ -1359,9 +1395,9 @@ dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'abpoa' in '../abpoa_1.5.3-1_arm64.deb'. -dpkg-deb: building package 'python3-pyabpoa-dbgsym' in '../python3-pyabpoa-dbgsym_1.5.3-1_arm64.deb'. -dpkg-deb: building package 'python3-pyabpoa' in '../python3-pyabpoa_1.5.3-1_arm64.deb'. dpkg-deb: building package 'abpoa-dbgsym' in '../abpoa-dbgsym_1.5.3-1_arm64.deb'. +dpkg-deb: building package 'python3-pyabpoa' in '../python3-pyabpoa_1.5.3-1_arm64.deb'. +dpkg-deb: building package 'python3-pyabpoa-dbgsym' in '../python3-pyabpoa-dbgsym_1.5.3-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../abpoa_1.5.3-1_arm64.buildinfo dpkg-genchanges --build=binary -O../abpoa_1.5.3-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1369,12 +1405,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1700251/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1700251/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3811010 and its subdirectories -I: Current time: Thu Nov 21 13:01:06 -12 2024 -I: pbuilder-time-stamp: 1732237266 +I: removing directory /srv/workspace/pbuilder/1700251 and its subdirectories +I: Current time: Thu Dec 25 21:26:20 +14 2025 +I: pbuilder-time-stamp: 1766647580 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/abpoa_1.5.3-1.diff: 71.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/abpoa_1.5.3-1.diff.gz b2/build.log: 84.2% -- replaced with stdout Compressing the 1st log... b1/build.log: 84.7% -- replaced with stdout Fri Nov 22 01:03:25 UTC 2024 I: diffoscope 283 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_abpoa_trixie_arm64_1732237405 + touch /var/log/reproducible-builds/diffoscope_stamp_abpoa_trixie_arm64_1732237405 + RESULT=0 + systemd-run '--description=diffoscope on abpoa/1.5.3-1 in trixie/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_6-66873 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ --run-session -c jenkins-reproducible-trixie-diffoscope-a1582d0e-343d-4fbf-b53d-6bfb19fa8f9c -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ/dbd-tmp-aw3kaPW ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ/abpoa_1.5.3-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ/abpoa_1.5.3-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ/abpoa_1.5.3-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ/b1/abpoa_1.5.3-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ/b2/abpoa_1.5.3-1_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_6-66873.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ/abpoa_1.5.3-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ/abpoa_1.5.3-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ/abpoa_1.5.3-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ/b1/abpoa_1.5.3-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.eGuCyfEZ/b2/abpoa_1.5.3-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.339s) 0.339s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.027s) 0.027s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 644ms CPU time consumed: 645ms _ __ _| |__ _ __ ___ __ _ / _` | '_ \| '_ \ / _ \ / _` | | (_| | |_) | |_) | (_) | (_| | \__,_|_.__/| .__/ \___/ \__,_| |_| Fri Nov 22 01:04:36 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Fri Nov 22 01:04:36 UTC 2024 I: abpoa from trixie built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-22 01:04:37] INFO: Starting at 2024-11-22 01:04:37.278087 [2024-11-22 01:04:37] INFO: Generating the pages of 1 package(s) [2024-11-22 01:04:37] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/abpoa_1.5.3-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/abpoa_1.5.3-1.diff.gz is missing [2024-11-22 01:04:37] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/abpoa_1.5.3-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/abpoa_1.5.3-1.diff.gz is missing [2024-11-22 01:04:37] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/arm64/abpoa didn't produce a buildlog, even though it has been built. [2024-11-22 01:04:37] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/abpoa_1.5.3-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/abpoa_1.5.3-1.diff.gz is missing [2024-11-22 01:04:37] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/abpoa_1.5.3-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/abpoa_1.5.3-1.diff.gz is missing [2024-11-22 01:04:37] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/abpoa_1.4.1-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/abpoa_1.4.1-3.diff.gz is missing [2024-11-22 01:04:37] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/abpoa_1.4.1-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/abpoa_1.4.1-3.diff.gz is missing [2024-11-22 01:04:37] INFO: Finished at 2024-11-22 01:04:37.716129, took: 0:00:00.438047 Fri Nov 22 01:04:37 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/arm64/abpoa.html Fri Nov 22 01:04:37 UTC 2024 I: Submitting .buildinfo files to external archives: Fri Nov 22 01:04:37 UTC 2024 I: Submitting 12K b1/abpoa_1.5.3-1_arm64.buildinfo.asc https://buildinfo.debian.net/71867a5dba8e50b714e5b7480525297748057dc2/abpoa_1.5.3-1_arm64 Fri Nov 22 01:04:38 UTC 2024 I: Submitting 12K b2/abpoa_1.5.3-1_arm64.buildinfo.asc https://buildinfo.debian.net/4086d0a03a00026b657e2c365421475bd282a6d2/abpoa_1.5.3-1_arm64 Fri Nov 22 01:04:39 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Nov 22 01:04:39 UTC 2024 I: Done submitting .buildinfo files. Fri Nov 22 01:04:39 UTC 2024 I: Removing signed abpoa_1.5.3-1_arm64.buildinfo.asc files: removed './b1/abpoa_1.5.3-1_arm64.buildinfo.asc' removed './b2/abpoa_1.5.3-1_arm64.buildinfo.asc' 1732237479 arm64 trixie abpoa Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/abpoa_1.5.3-1.rbuild.log: 82.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/abpoa_1.5.3-1.rbuild.log.gz [2024-11-22 01:04:39] INFO: Starting at 2024-11-22 01:04:39.865273 [2024-11-22 01:04:39] INFO: Generating the pages of 1 package(s) [2024-11-22 01:04:40] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/abpoa_1.5.3-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/abpoa_1.5.3-1.diff.gz is missing [2024-11-22 01:04:40] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/abpoa_1.5.3-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/abpoa_1.5.3-1.diff.gz is missing [2024-11-22 01:04:40] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/abpoa_1.5.3-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/abpoa_1.5.3-1.diff.gz is missing [2024-11-22 01:04:40] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/abpoa_1.5.3-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/abpoa_1.5.3-1.diff.gz is missing [2024-11-22 01:04:40] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/abpoa_1.4.1-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/abpoa_1.4.1-3.diff.gz is missing [2024-11-22 01:04:40] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/abpoa_1.4.1-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/abpoa_1.4.1-3.diff.gz is missing [2024-11-22 01:04:40] INFO: Finished at 2024-11-22 01:04:40.182310, took: 0:00:00.317041 All cleanup done. Fri Nov 22 01:04:40 UTC 2024 - total duration: 0h 5m 43s. Fri Nov 22 01:04:40 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-bMOphCBE, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 5min 47.250s CPU time consumed: 7.145s