Running as unit: rb-build-arm64_6-76466.service ==================================================================================== Tue Jan 21 13:07:11 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_6) on jenkins, called using "codethink04-arm64 codethink01-arm64" as arguments. Tue Jan 21 13:07:11 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-gCf9jTYt" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Tue Jan 21 13:07:12 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Tue Jan 21 13:07:12 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-EYiQJf' Tue Jan 21 13:07:12 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink01-arm64.debian.net is marked as down. Tue Jan 21 13:07:12 UTC 2025 - checking via ssh if codethink01-arm64.debian.net is up. removed '/tmp/read-only-fs-test-a4u0sk' ok, let's check if nanofilt is building anywhere yet… ok, nanofilt is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of nanofilt in trixie on arm64 on jenkins now. 1st build will be done on codethink04-arm64.debian.net. 2nd build will be done on codethink01-arm64.debian.net. ============================================================================= Tue Jan 21 13:07:27 UTC 2025 I: starting to build nanofilt/trixie/arm64 on jenkins on '2025-01-21 13:07' Tue Jan 21 13:07:27 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_6/76466/console.log 1737464847 arm64 trixie nanofilt Tue Jan 21 13:07:27 UTC 2025 I: Downloading source for trixie/nanofilt=2.8.0-1 --2025-01-21 13:07:27-- http://deb.debian.org/debian/pool/main/n/nanofilt/nanofilt_2.8.0-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1439 (1.4K) [text/prs.lines.tag] Saving to: ‘nanofilt_2.8.0-1.dsc’ 0K . 100% 149M=0s 2025-01-21 13:07:28 (149 MB/s) - ‘nanofilt_2.8.0-1.dsc’ saved [1439/1439] --2025-01-21 13:07:27-- http://deb.debian.org/debian/pool/main/n/nanofilt/nanofilt_2.8.0-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1439 (1.4K) [text/prs.lines.tag] Saving to: ‘nanofilt_2.8.0-1.dsc’ 0K . 100% 149M=0s 2025-01-21 13:07:28 (149 MB/s) - ‘nanofilt_2.8.0-1.dsc’ saved [1439/1439] Tue Jan 21 13:07:28 UTC 2025 I: nanofilt_2.8.0-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: nanofilt Binary: nanofilt Architecture: all Version: 2.8.0-1 Maintainer: Debian Med Packaging Team Uploaders: Shayan Doust Homepage: https://github.com/wdecoster/nanofilt Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/nanofilt Vcs-Git: https://salsa.debian.org/med-team/nanofilt.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), python3-all, python3-setuptools, dh-python, python3-biopython, python3-pandas, python3-flake8 Package-List: nanofilt deb science optional arch=all Checksums-Sha1: 131c631296ac1415160d0eea0831f3b1cb451df8 19020 nanofilt_2.8.0.orig.tar.gz 21e012c79a0eb62e09de5363c79778e73865252d 63923836 nanofilt_2.8.0-1.debian.tar.xz Checksums-Sha256: 4902328b318ace04f726c58d62ce5edeb3c1c35f7b2f316dee492d07baad8fd0 19020 nanofilt_2.8.0.orig.tar.gz b1f512e080d8872d4bea21b8737f2b274825b6d8e7efc4d7bb542da6ca184045 63923836 nanofilt_2.8.0-1.debian.tar.xz Files: 954d798ff9d9f8cbcbc68e900f3db6f8 19020 nanofilt_2.8.0.orig.tar.gz 7ed05075298c8a848d121f882da2c911 63923836 nanofilt_2.8.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iHUEARYIAB0WIQSglbZu4JAkvuai8HIqJ5BL1yQ+2gUCY7ArMQAKCRAqJ5BL1yQ+ 2oKaAP4xj6o/TTuUmiRbrCHr+urCfBPKnS28EEB5ERfkBvCVugEApgd/fH9iF11F YiqeTro1mqEfC0FenbzSTXdVdoJVmgE= =HCUb -----END PGP SIGNATURE----- Tue Jan 21 13:07:28 UTC 2025 I: Checking whether the package is not for us Tue Jan 21 13:07:28 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Tue Jan 21 13:07:28 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Tue Jan 21 13:07:28 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Tue Jan 21 13:07:28 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-WHN7Lk' ==================================================================================== Tue Jan 21 13:07:29 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "1 nanofilt trixie /srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT 2.8.0-1" as arguments. Tue Jan 21 13:07:29 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-O777eB4m" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Tue Jan 21 13:07:29 UTC 2025 I: Downloading source for trixie/nanofilt=2.8.0-1 Reading package lists... NOTICE: 'nanofilt' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/nanofilt.git Please use: git clone https://salsa.debian.org/med-team/nanofilt.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 63.9 MB of source archives. Get:1 http://deb.debian.org/debian trixie/main nanofilt 2.8.0-1 (dsc) [1439 B] Get:2 http://deb.debian.org/debian trixie/main nanofilt 2.8.0-1 (tar) [19.0 kB] Get:3 http://deb.debian.org/debian trixie/main nanofilt 2.8.0-1 (diff) [63.9 MB] Fetched 63.9 MB in 2s (31.6 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'nanofilt' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/nanofilt.git Please use: git clone https://salsa.debian.org/med-team/nanofilt.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 63.9 MB of source archives. Get:1 http://deb.debian.org/debian trixie/main nanofilt 2.8.0-1 (dsc) [1439 B] Get:2 http://deb.debian.org/debian trixie/main nanofilt 2.8.0-1 (tar) [19.0 kB] Get:3 http://deb.debian.org/debian trixie/main nanofilt 2.8.0-1 (diff) [63.9 MB] Fetched 63.9 MB in 2s (31.6 MB/s) Download complete and in download only mode ============================================================================= Building nanofilt in trixie on arm64 on codethink04-arm64 now. Date: Tue Jan 21 13:07:31 GMT 2025 Date UTC: Tue Jan 21 13:07:31 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Tue Jan 21 01:07:32 -12 2025 I: pbuilder-time-stamp: 1737464852 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [nanofilt_2.8.0-1.dsc] I: copying [./nanofilt_2.8.0.orig.tar.gz] I: copying [./nanofilt_2.8.0-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./nanofilt_2.8.0-1.dsc: unsupported subcommand dpkg-source: info: extracting nanofilt in nanofilt-2.8.0 dpkg-source: info: unpacking nanofilt_2.8.0.orig.tar.gz dpkg-source: info: unpacking nanofilt_2.8.0-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1991288/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='8e795f4683dd4cac91f1a034485a724b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1991288' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT/pbuilderrc_YFSV --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT/b1 --logfile b1/build.log nanofilt_2.8.0-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1991288/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), python3-all, python3-setuptools, dh-python, python3-biopython, python3-pandas, python3-flake8 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19970 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-flake8; however: Package python3-flake8 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-biopython{a} python3-cairo{a} python3-chardet{a} python3-dateutil{a} python3-flake8{a} python3-freetype{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-mccabe{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pkg-resources{a} python3-pycodestyle{a} python3-pyflakes{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ pyflakes3 python-biopython-doc python3-bottleneck python3-bs4 python3-html5lib python3-jinja2 python3-lxml python3-matplotlib python3-numexpr python3-odf python3-olefile python3-openpyxl python3-scipy python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 132 newly installed, 0 to remove and 0 not upgraded. Need to get 73.5 MB of archives. After unpacking 310 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.8-5 [810 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.8-5 [1934 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.12.8-1 [26.9 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-6 [257 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 13 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.8-5 [1904 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.8-5 [677 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.12.8-1 [9788 B] Get: 23 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.12.8-1 [27.9 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libpython3.13-minimal arm64 3.13.1-3 [852 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 python3.13-minimal arm64 3.13.1-3 [1990 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 sgml-base all 1.31 [15.4 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-4 [198 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-1 [91.6 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-4 [723 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.23 [90.6 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-2 [539 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 48 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-4 [1532 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.23 [919 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 63 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 75.6.0-1 [720 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20250108 [113 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libfontenc1 arm64 1:1.1.8-1+b2 [22.5 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.44-3 [273 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+23.2 [216 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 xfonts-utils arm64 1:7.7+7 [89.3 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 79 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-2 [317 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.0-4 [98.7 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-2 [386 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b3 [27.2 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libcairo2 arm64 1.18.2-2 [483 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.23-1+b1 [42.5 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-12 [361 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.82.4-2 [1413 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 10.2.0-1 [443 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libimagequant0 arm64 2.18.0-1+b2 [34.6 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.0-4 [1812 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 libopenjp2-7 arm64 2.5.0-2+b4 [185 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 libpython3.13-stdlib arm64 3.13.1-3 [1912 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 libraqm0 arm64 0.10.2-1 [13.6 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [113 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB] Get: 113 http://deb.debian.org/debian trixie/main arm64 python3.13 arm64 3.13.1-3 [740 kB] Get: 114 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.12.8-1 [1048 B] Get: 115 http://deb.debian.org/debian trixie/main arm64 python3-numpy arm64 1:1.26.4+ds-12 [3816 kB] Get: 116 http://deb.debian.org/debian trixie/main arm64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 117 http://deb.debian.org/debian trixie/main arm64 python3-pil arm64 10.4.0-1.1 [498 kB] Get: 118 http://deb.debian.org/debian trixie/main arm64 python3-cairo arm64 1.26.1-2+b1 [130 kB] Get: 119 http://deb.debian.org/debian trixie/main arm64 python3-freetype all 2.5.1-1 [89.3 kB] Get: 120 http://deb.debian.org/debian trixie/main arm64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 121 http://deb.debian.org/debian trixie/main arm64 python3-reportlab all 4.2.5-1 [1117 kB] Get: 122 http://deb.debian.org/debian trixie/main arm64 xml-core all 0.19 [20.1 kB] Get: 123 http://deb.debian.org/debian trixie/main arm64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 124 http://deb.debian.org/debian trixie/main arm64 python3-biopython arm64 1.84+dfsg-4+b1 [1644 kB] Get: 125 http://deb.debian.org/debian trixie/main arm64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 126 http://deb.debian.org/debian trixie/main arm64 python3-mccabe all 0.7.0-1 [10.5 kB] Get: 127 http://deb.debian.org/debian trixie/main arm64 python3-pycodestyle all 2.12.1-2 [39.7 kB] Get: 128 http://deb.debian.org/debian trixie/main arm64 python3-pyflakes all 3.2.0-2 [57.2 kB] Get: 129 http://deb.debian.org/debian trixie/main arm64 python3-flake8 all 7.1.1-3 [56.3 kB] Get: 130 http://deb.debian.org/debian trixie/main arm64 python3-tz all 2024.2-1 [31.0 kB] Get: 131 http://deb.debian.org/debian trixie/main arm64 python3-pandas-lib arm64 2.2.3+dfsg-5+b1 [6028 kB] Get: 132 http://deb.debian.org/debian trixie/main arm64 python3-pandas all 2.2.3+dfsg-5 [3096 kB] Fetched 73.5 MB in 1s (110 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19970 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-5_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.8-5) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.8-5_arm64.deb ... Unpacking python3.12-minimal (3.12.8-5) ... Setting up libpython3.12-minimal:arm64 (3.12.8-5) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-5) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20290 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.8-1_arm64.deb ... Unpacking python3-minimal (3.12.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-6_all.deb ... Unpacking tzdata (2024b-6) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../04-libffi8_3.4.6-1_arm64.deb ... Unpacking libffi8:arm64 (3.4.6-1) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../05-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../06-libcom-err2_1.47.2-1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2-1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../07-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../08-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../09-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../10-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../11-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../12-libtirpc3t64_1.3.4+ds-1.3+b1_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../13-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../14-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../15-libreadline8t64_8.2-6_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../16-libpython3.12-stdlib_3.12.8-5_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.8-5) ... Selecting previously unselected package python3.12. Preparing to unpack .../17-python3.12_3.12.8-5_arm64.deb ... Unpacking python3.12 (3.12.8-5) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../18-libpython3-stdlib_3.12.8-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.12.8-1) ... Setting up python3-minimal (3.12.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21358 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.8-1_arm64.deb ... Unpacking python3 (3.12.8-1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../001-libpython3.13-minimal_3.13.1-3_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.1-3) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../002-python3.13-minimal_3.13.1-3_arm64.deb ... Unpacking python3.13-minimal (3.13.1-3) ... Selecting previously unselected package sgml-base. Preparing to unpack .../003-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../006-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.22.5-4_arm64.deb ... Unpacking gettext-base (0.22.5-4) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../009-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.40.4-1_arm64.deb ... Unpacking bsdextrautils (2.40.4-1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../012-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... 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Unpacking libdebhelper-perl (13.23) ... Selecting previously unselected package libtool. Preparing to unpack .../020-libtool_2.5.4-2_all.deb ... Unpacking libtool (2.5.4-2) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../021-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../022-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../023-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../024-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. 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Setting up libicu72:arm64 (72.1-6) ... Setting up liblerc4:arm64 (4.0.0+ds-5) ... Setting up bsdextrautils (2.40.4-1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libxcb-render0:arm64 (1.17.0-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.23) ... Setting up libbrotli1:arm64 (1.1.0-2+b6) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up x11-common (1:7.7+23.2) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libdeflate0:arm64 (1.23-1+b1) ... Setting up gettext-base (0.22.5-4) ... Setting up m4 (1.4.19-5) ... Setting up libxcb-shm0:arm64 (1.17.0-2+b1) ... Setting up libcom-err2:arm64 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libjbig0:arm64 (2.1-6.1+b2) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up tzdata (2024b-6) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Jan 21 13:08:36 UTC 2025. Universal Time is now: Tue Jan 21 13:08:36 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpython3.13-minimal:arm64 (3.13.1-3) ... Setting up libfontenc1:arm64 (1:1.1.8-1+b2) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:arm64 (1.0.16-1) ... Setting up libimagequant0:arm64 (2.18.0-1+b2) ... Setting up libunistring5:arm64 (1.3-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:arm64 (1.6.44-3) ... Setting up autopoint (0.22.5-4) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up libgfortran5:arm64 (14.2.0-12) ... Setting up autoconf (2.72-3) ... Setting up libwebp7:arm64 (1.5.0-0.1) ... Setting up libffi8:arm64 (3.4.6-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:arm64 (4.5.1+git230720-5) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libopenjp2-7:arm64 (2.5.0-2+b4) ... Setting up python3.13-minimal (3.13.1-3) ... Setting up libx11-6:arm64 (2:1.8.10-2) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libwebpmux3:arm64 (1.5.0-0.1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.22.5-4) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b3) ... Setting up libtool (2.5.4-2) ... Setting up fontconfig-config (2.15.0-2) ... Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... Setting up libxext6:arm64 (2:1.3.4-1+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libglib2.0-0t64:arm64 (2.82.4-2) ... No schema files found: doing nothing. Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-7) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:arm64 (10.2.0-1) ... Setting up libfontconfig1:arm64 (2.15.0-2) ... Setting up libpython3.13-stdlib:arm64 (3.13.1-3) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.1-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:arm64 (1.18.2-2) ... Setting up libraqm0:arm64 (0.10.2-1) ... Setting up libnsl2:arm64 (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:arm64 (3.12.8-5) ... Setting up python3.12 (3.12.8-5) ... Setting up debhelper (13.23) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up libpython3-stdlib:arm64 (3.12.8-1) ... Setting up python3 (3.12.8-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-freetype (2.5.1-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-tz (2024.2-1) ... Setting up python3-pil:arm64 (10.4.0-1.1) ... Setting up python3-pycodestyle (2.12.1-2) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-mccabe (0.7.0-1) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-cairo (1.26.1-2+b1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.12.8-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-reportlab (4.2.5-1) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up python3-setuptools (75.6.0-1) ... Setting up python3-pyflakes (3.2.0-2) ... Setting up python3-flake8 (7.1.1-3) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up dh-python (6.20250108) ... Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-5+b1) ... Setting up python3-pandas (2.2.3+dfsg-5) ... Processing triggers for libc-bin (2.40-5) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.84+dfsg-4+b1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/nanofilt-2.8.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../nanofilt_2.8.0-1_source.changes dpkg-buildpackage: info: source package nanofilt dpkg-buildpackage: info: source version 2.8.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean running clean removing '/build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it I: pybuild base:311: python3.12 setup.py clean running clean removing '/build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config running config I: pybuild base:311: python3.12 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py build running build running build_py creating /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt copying nanofilt/utils.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt copying nanofilt/__init__.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt copying nanofilt/NanoFilt.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt copying nanofilt/version.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt creating /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/scripts copying scripts/get_read_ends.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/scripts copying scripts/timefilt.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/scripts running egg_info creating NanoFilt.egg-info writing NanoFilt.egg-info/PKG-INFO writing dependency_links to NanoFilt.egg-info/dependency_links.txt writing entry points to NanoFilt.egg-info/entry_points.txt writing requirements to NanoFilt.egg-info/requires.txt writing top-level names to NanoFilt.egg-info/top_level.txt writing manifest file 'NanoFilt.egg-info/SOURCES.txt' reading manifest file 'NanoFilt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'NanoFilt.egg-info/SOURCES.txt' copying scripts/test.sh -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/scripts I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt copying nanofilt/utils.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt copying nanofilt/__init__.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt copying nanofilt/NanoFilt.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt copying nanofilt/version.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt creating /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/scripts copying scripts/get_read_ends.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/scripts copying scripts/timefilt.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/scripts running egg_info writing NanoFilt.egg-info/PKG-INFO writing dependency_links to NanoFilt.egg-info/dependency_links.txt writing entry points to NanoFilt.egg-info/entry_points.txt writing requirements to NanoFilt.egg-info/requires.txt writing top-level names to NanoFilt.egg-info/top_level.txt reading manifest file 'NanoFilt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'NanoFilt.egg-info/SOURCES.txt' copying scripts/test.sh -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/scripts dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build; python3.13 -m unittest discover -v -k-pytest ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN I: pybuild base:311: cd /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build; python3.12 -m unittest discover -v -k-pytest ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/nanofilt/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py install --root /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt --install-scripts=/usr/bin/ running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing NanoFilt.egg-info/PKG-INFO writing dependency_links to NanoFilt.egg-info/dependency_links.txt writing entry points to NanoFilt.egg-info/entry_points.txt writing requirements to NanoFilt.egg-info/requires.txt writing top-level names to NanoFilt.egg-info/top_level.txt reading manifest file 'NanoFilt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'NanoFilt.egg-info/SOURCES.txt' running install_lib creating /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages creating /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/scripts copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/scripts/test.sh -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/scripts copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/scripts/timefilt.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/scripts copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/scripts/get_read_ends.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/scripts creating /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt creating /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt/__pycache__ copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt/__pycache__ copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt/__pycache__ copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt/version.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt/NanoFilt.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt/__init__.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt/utils.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/scripts/timefilt.py to timefilt.cpython-313.pyc byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/scripts/get_read_ends.py to get_read_ends.cpython-313.pyc byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt/version.py to version.cpython-313.pyc byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt/NanoFilt.py to NanoFilt.cpython-313.pyc byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt/utils.py to utils.cpython-313.pyc running install_egg_info Copying NanoFilt.egg-info to /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/NanoFilt-2.8.0.egg-info Skipping SOURCES.txt running install_scripts Installing NanoFilt script to /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/bin I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt --install-scripts=/usr/bin/ running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing NanoFilt.egg-info/PKG-INFO writing dependency_links to NanoFilt.egg-info/dependency_links.txt writing entry points to NanoFilt.egg-info/entry_points.txt writing requirements to NanoFilt.egg-info/requires.txt writing top-level names to NanoFilt.egg-info/top_level.txt reading manifest file 'NanoFilt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'NanoFilt.egg-info/SOURCES.txt' running install_lib creating /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages creating /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/scripts copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/scripts/test.sh -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/scripts copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/scripts/timefilt.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/scripts copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/scripts/get_read_ends.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/scripts creating /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt creating /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt/__pycache__ copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt/__pycache__/version.cpython-312.pyc -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt/__pycache__ copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt/__pycache__ copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt/version.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt/NanoFilt.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt/__init__.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt/utils.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/scripts/timefilt.py to timefilt.cpython-312.pyc byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/scripts/get_read_ends.py to get_read_ends.cpython-312.pyc byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt/version.py to version.cpython-312.pyc byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt/NanoFilt.py to NanoFilt.cpython-312.pyc byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt/utils.py to utils.cpython-312.pyc running install_egg_info Copying NanoFilt.egg-info to /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/NanoFilt-2.8.0.egg-info Skipping SOURCES.txt running install_scripts Installing NanoFilt script to /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/bin dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/nanofilt-2.8.0' dh_installexamples find debian -name __pycache__ -type d | xargs rm -rf find debian/nanofilt/usr/lib/python* -name scripts -type d | xargs rm -rf make[1]: Leaving directory '/build/reproducible-path/nanofilt-2.8.0' dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'nanofilt' in '../nanofilt_2.8.0-1_all.deb'. dpkg-genbuildinfo --build=binary -O../nanofilt_2.8.0-1_arm64.buildinfo dpkg-genchanges --build=binary -O../nanofilt_2.8.0-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1991288 and its subdirectories I: Current time: Tue Jan 21 01:12:25 -12 2025 I: pbuilder-time-stamp: 1737465145 Tue Jan 21 13:12:25 UTC 2025 I: Signing ./b1/nanofilt_2.8.0-1_arm64.buildinfo as nanofilt_2.8.0-1_arm64.buildinfo.asc Tue Jan 21 13:12:25 UTC 2025 I: Signed ./b1/nanofilt_2.8.0-1_arm64.buildinfo as ./b1/nanofilt_2.8.0-1_arm64.buildinfo.asc Tue Jan 21 13:12:25 UTC 2025 - build #1 for nanofilt/trixie/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Tue Jan 21 13:12:25 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-O777eB4m, removing. /srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Jan 21 13:12 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jan 21 13:07 b2 -rw-r--r-- 1 jenkins jenkins 1439 Dec 31 2022 nanofilt_2.8.0-1.dsc -rw------- 1 jenkins jenkins 2551 Jan 21 13:07 rbuildlog.rvH2Win /srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT/b1: total 62624 -rw-r--r-- 1 jenkins jenkins 69260 Jan 21 13:12 build.log -rw-r--r-- 1 jenkins jenkins 63923836 Jan 21 13:12 nanofilt_2.8.0-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1439 Jan 21 13:12 nanofilt_2.8.0-1.dsc -rw-r--r-- 1 jenkins jenkins 12452 Jan 21 13:12 nanofilt_2.8.0-1_all.deb -rw-r--r-- 1 jenkins jenkins 7807 Jan 21 13:12 nanofilt_2.8.0-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 8689 Jan 21 13:12 nanofilt_2.8.0-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1097 Jan 21 13:12 nanofilt_2.8.0-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 1526 Jan 21 13:12 nanofilt_2.8.0-1_source.changes -rw-r--r-- 1 jenkins jenkins 19020 Jan 21 13:12 nanofilt_2.8.0.orig.tar.gz /srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT/b2: total 0 Tue Jan 21 13:12:34 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Jan 21 01:07:32 -12 2025 I: pbuilder-time-stamp: 1737464852 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [nanofilt_2.8.0-1.dsc] I: copying [./nanofilt_2.8.0.orig.tar.gz] I: copying [./nanofilt_2.8.0-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./nanofilt_2.8.0-1.dsc: unsupported subcommand dpkg-source: info: extracting nanofilt in nanofilt-2.8.0 dpkg-source: info: unpacking nanofilt_2.8.0.orig.tar.gz dpkg-source: info: unpacking nanofilt_2.8.0-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1991288/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='8e795f4683dd4cac91f1a034485a724b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1991288' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT/pbuilderrc_YFSV --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT/b1 --logfile b1/build.log nanofilt_2.8.0-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1991288/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), python3-all, python3-setuptools, dh-python, python3-biopython, python3-pandas, python3-flake8 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19970 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-flake8; however: Package python3-flake8 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-biopython{a} python3-cairo{a} python3-chardet{a} python3-dateutil{a} python3-flake8{a} python3-freetype{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-mccabe{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pkg-resources{a} python3-pycodestyle{a} python3-pyflakes{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ pyflakes3 python-biopython-doc python3-bottleneck python3-bs4 python3-html5lib python3-jinja2 python3-lxml python3-matplotlib python3-numexpr python3-odf python3-olefile python3-openpyxl python3-scipy python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 132 newly installed, 0 to remove and 0 not upgraded. Need to get 73.5 MB of archives. After unpacking 310 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.8-5 [810 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.8-5 [1934 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.12.8-1 [26.9 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-6 [257 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 13 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.8-5 [1904 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.8-5 [677 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.12.8-1 [9788 B] Get: 23 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.12.8-1 [27.9 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libpython3.13-minimal arm64 3.13.1-3 [852 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 python3.13-minimal arm64 3.13.1-3 [1990 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 sgml-base all 1.31 [15.4 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-4 [198 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-1 [91.6 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-4 [723 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.23 [90.6 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-2 [539 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 48 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-4 [1532 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.23 [919 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 63 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 75.6.0-1 [720 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20250108 [113 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libfontenc1 arm64 1:1.1.8-1+b2 [22.5 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.44-3 [273 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+23.2 [216 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 xfonts-utils arm64 1:7.7+7 [89.3 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 79 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-2 [317 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.0-4 [98.7 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-2 [386 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b3 [27.2 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libcairo2 arm64 1.18.2-2 [483 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.23-1+b1 [42.5 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-12 [361 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.82.4-2 [1413 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 10.2.0-1 [443 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libimagequant0 arm64 2.18.0-1+b2 [34.6 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.0-4 [1812 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 libopenjp2-7 arm64 2.5.0-2+b4 [185 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 libpython3.13-stdlib arm64 3.13.1-3 [1912 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 libraqm0 arm64 0.10.2-1 [13.6 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [113 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB] Get: 113 http://deb.debian.org/debian trixie/main arm64 python3.13 arm64 3.13.1-3 [740 kB] Get: 114 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.12.8-1 [1048 B] Get: 115 http://deb.debian.org/debian trixie/main arm64 python3-numpy arm64 1:1.26.4+ds-12 [3816 kB] Get: 116 http://deb.debian.org/debian trixie/main arm64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 117 http://deb.debian.org/debian trixie/main arm64 python3-pil arm64 10.4.0-1.1 [498 kB] Get: 118 http://deb.debian.org/debian trixie/main arm64 python3-cairo arm64 1.26.1-2+b1 [130 kB] Get: 119 http://deb.debian.org/debian trixie/main arm64 python3-freetype all 2.5.1-1 [89.3 kB] Get: 120 http://deb.debian.org/debian trixie/main arm64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 121 http://deb.debian.org/debian trixie/main arm64 python3-reportlab all 4.2.5-1 [1117 kB] Get: 122 http://deb.debian.org/debian trixie/main arm64 xml-core all 0.19 [20.1 kB] Get: 123 http://deb.debian.org/debian trixie/main arm64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 124 http://deb.debian.org/debian trixie/main arm64 python3-biopython arm64 1.84+dfsg-4+b1 [1644 kB] Get: 125 http://deb.debian.org/debian trixie/main arm64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 126 http://deb.debian.org/debian trixie/main arm64 python3-mccabe all 0.7.0-1 [10.5 kB] Get: 127 http://deb.debian.org/debian trixie/main arm64 python3-pycodestyle all 2.12.1-2 [39.7 kB] Get: 128 http://deb.debian.org/debian trixie/main arm64 python3-pyflakes all 3.2.0-2 [57.2 kB] Get: 129 http://deb.debian.org/debian trixie/main arm64 python3-flake8 all 7.1.1-3 [56.3 kB] Get: 130 http://deb.debian.org/debian trixie/main arm64 python3-tz all 2024.2-1 [31.0 kB] Get: 131 http://deb.debian.org/debian trixie/main arm64 python3-pandas-lib arm64 2.2.3+dfsg-5+b1 [6028 kB] Get: 132 http://deb.debian.org/debian trixie/main arm64 python3-pandas all 2.2.3+dfsg-5 [3096 kB] Fetched 73.5 MB in 1s (110 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19970 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-5_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.8-5) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../16-libpython3.12-stdlib_3.12.8-5_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.8-5) ... Selecting previously unselected package python3.12. Preparing to unpack .../17-python3.12_3.12.8-5_arm64.deb ... Unpacking python3.12 (3.12.8-5) ... 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Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../083-libpython3.13-stdlib_3.13.1-3_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.1-3) ... Selecting previously unselected package libraqm0:arm64. Preparing to unpack .../084-libraqm0_0.10.2-1_arm64.deb ... Unpacking libraqm0:arm64 (0.10.2-1) ... Selecting previously unselected package libsharpyuv0:arm64. Preparing to unpack .../085-libsharpyuv0_1.5.0-0.1_arm64.deb ... Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... Selecting previously unselected package libwebp7:arm64. Preparing to unpack .../086-libwebp7_1.5.0-0.1_arm64.deb ... Unpacking libwebp7:arm64 (1.5.0-0.1) ... Selecting previously unselected package libtiff6:arm64. Preparing to unpack .../087-libtiff6_4.5.1+git230720-5_arm64.deb ... Unpacking libtiff6:arm64 (4.5.1+git230720-5) ... Selecting previously unselected package libwebpdemux2:arm64. Preparing to unpack .../088-libwebpdemux2_1.5.0-0.1_arm64.deb ... 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Unpacking python3-flake8 (7.1.1-3) ... Selecting previously unselected package python3-tz. Preparing to unpack .../107-python3-tz_2024.2-1_all.deb ... Unpacking python3-tz (2024.2-1) ... Selecting previously unselected package python3-pandas-lib:arm64. Preparing to unpack .../108-python3-pandas-lib_2.2.3+dfsg-5+b1_arm64.deb ... Unpacking python3-pandas-lib:arm64 (2.2.3+dfsg-5+b1) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../109-python3-pandas_2.2.3+dfsg-5_all.deb ... Unpacking python3-pandas (2.2.3+dfsg-5) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libgraphite2-3:arm64 (1.3.14-2+b1) ... Setting up liblcms2-2:arm64 (2.16-2) ... Setting up libpixman-1-0:arm64 (0.44.0-3) ... Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... Setting up libxau6:arm64 (1:1.0.11-1) ... Setting up libxdmcp6:arm64 (1:1.1.5-1) ... Setting up libkeyutils1:arm64 (1.6.3-4) ... Setting up libxcb1:arm64 (1.17.0-2+b1) ... Setting up libicu72:arm64 (72.1-6) ... Setting up liblerc4:arm64 (4.0.0+ds-5) ... Setting up bsdextrautils (2.40.4-1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libxcb-render0:arm64 (1.17.0-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.23) ... Setting up libbrotli1:arm64 (1.1.0-2+b6) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up x11-common (1:7.7+23.2) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libdeflate0:arm64 (1.23-1+b1) ... Setting up gettext-base (0.22.5-4) ... Setting up m4 (1.4.19-5) ... Setting up libxcb-shm0:arm64 (1.17.0-2+b1) ... Setting up libcom-err2:arm64 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libjbig0:arm64 (2.1-6.1+b2) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up tzdata (2024b-6) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Jan 21 13:08:36 UTC 2025. Universal Time is now: Tue Jan 21 13:08:36 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpython3.13-minimal:arm64 (3.13.1-3) ... Setting up libfontenc1:arm64 (1:1.1.8-1+b2) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:arm64 (1.0.16-1) ... Setting up libimagequant0:arm64 (2.18.0-1+b2) ... Setting up libunistring5:arm64 (1.3-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:arm64 (1.6.44-3) ... Setting up autopoint (0.22.5-4) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up libgfortran5:arm64 (14.2.0-12) ... Setting up autoconf (2.72-3) ... Setting up libwebp7:arm64 (1.5.0-0.1) ... Setting up libffi8:arm64 (3.4.6-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:arm64 (4.5.1+git230720-5) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libopenjp2-7:arm64 (2.5.0-2+b4) ... Setting up python3.13-minimal (3.13.1-3) ... Setting up libx11-6:arm64 (2:1.8.10-2) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libwebpmux3:arm64 (1.5.0-0.1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.22.5-4) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b3) ... Setting up libtool (2.5.4-2) ... Setting up fontconfig-config (2.15.0-2) ... Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... Setting up libxext6:arm64 (2:1.3.4-1+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libglib2.0-0t64:arm64 (2.82.4-2) ... No schema files found: doing nothing. Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-7) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:arm64 (10.2.0-1) ... Setting up libfontconfig1:arm64 (2.15.0-2) ... Setting up libpython3.13-stdlib:arm64 (3.13.1-3) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.1-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:arm64 (1.18.2-2) ... Setting up libraqm0:arm64 (0.10.2-1) ... Setting up libnsl2:arm64 (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:arm64 (3.12.8-5) ... Setting up python3.12 (3.12.8-5) ... Setting up debhelper (13.23) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up libpython3-stdlib:arm64 (3.12.8-1) ... Setting up python3 (3.12.8-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-freetype (2.5.1-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-tz (2024.2-1) ... Setting up python3-pil:arm64 (10.4.0-1.1) ... Setting up python3-pycodestyle (2.12.1-2) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-mccabe (0.7.0-1) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-cairo (1.26.1-2+b1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.12.8-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-reportlab (4.2.5-1) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up python3-setuptools (75.6.0-1) ... Setting up python3-pyflakes (3.2.0-2) ... Setting up python3-flake8 (7.1.1-3) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up dh-python (6.20250108) ... Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-5+b1) ... Setting up python3-pandas (2.2.3+dfsg-5) ... Processing triggers for libc-bin (2.40-5) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.84+dfsg-4+b1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/nanofilt-2.8.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../nanofilt_2.8.0-1_source.changes dpkg-buildpackage: info: source package nanofilt dpkg-buildpackage: info: source version 2.8.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean running clean removing '/build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it I: pybuild base:311: python3.12 setup.py clean running clean removing '/build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config running config I: pybuild base:311: python3.12 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py build running build running build_py creating /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt copying nanofilt/utils.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt copying nanofilt/__init__.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt copying nanofilt/NanoFilt.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt copying nanofilt/version.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt creating /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/scripts copying scripts/get_read_ends.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/scripts copying scripts/timefilt.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/scripts running egg_info creating NanoFilt.egg-info writing NanoFilt.egg-info/PKG-INFO writing dependency_links to NanoFilt.egg-info/dependency_links.txt writing entry points to NanoFilt.egg-info/entry_points.txt writing requirements to NanoFilt.egg-info/requires.txt writing top-level names to NanoFilt.egg-info/top_level.txt writing manifest file 'NanoFilt.egg-info/SOURCES.txt' reading manifest file 'NanoFilt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'NanoFilt.egg-info/SOURCES.txt' copying scripts/test.sh -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/scripts I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt copying nanofilt/utils.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt copying nanofilt/__init__.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt copying nanofilt/NanoFilt.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt copying nanofilt/version.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt creating /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/scripts copying scripts/get_read_ends.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/scripts copying scripts/timefilt.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/scripts running egg_info writing NanoFilt.egg-info/PKG-INFO writing dependency_links to NanoFilt.egg-info/dependency_links.txt writing entry points to NanoFilt.egg-info/entry_points.txt writing requirements to NanoFilt.egg-info/requires.txt writing top-level names to NanoFilt.egg-info/top_level.txt reading manifest file 'NanoFilt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'NanoFilt.egg-info/SOURCES.txt' copying scripts/test.sh -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/scripts dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build; python3.13 -m unittest discover -v -k-pytest ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN I: pybuild base:311: cd /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build; python3.12 -m unittest discover -v -k-pytest ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/nanofilt/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py install --root /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt --install-scripts=/usr/bin/ running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing NanoFilt.egg-info/PKG-INFO writing dependency_links to NanoFilt.egg-info/dependency_links.txt writing entry points to NanoFilt.egg-info/entry_points.txt writing requirements to NanoFilt.egg-info/requires.txt writing top-level names to NanoFilt.egg-info/top_level.txt reading manifest file 'NanoFilt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'NanoFilt.egg-info/SOURCES.txt' running install_lib creating /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages creating /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/scripts copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/scripts/test.sh -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/scripts copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/scripts/timefilt.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/scripts copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/scripts/get_read_ends.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/scripts creating /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt creating /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt/__pycache__ copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt/__pycache__ copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt/__pycache__ copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt/version.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt/NanoFilt.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt/__init__.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt/utils.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/scripts/timefilt.py to timefilt.cpython-313.pyc byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/scripts/get_read_ends.py to get_read_ends.cpython-313.pyc byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt/version.py to version.cpython-313.pyc byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt/NanoFilt.py to NanoFilt.cpython-313.pyc byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt/utils.py to utils.cpython-313.pyc running install_egg_info Copying NanoFilt.egg-info to /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/NanoFilt-2.8.0.egg-info Skipping SOURCES.txt running install_scripts Installing NanoFilt script to /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/bin I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt --install-scripts=/usr/bin/ running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing NanoFilt.egg-info/PKG-INFO writing dependency_links to NanoFilt.egg-info/dependency_links.txt writing entry points to NanoFilt.egg-info/entry_points.txt writing requirements to NanoFilt.egg-info/requires.txt writing top-level names to NanoFilt.egg-info/top_level.txt reading manifest file 'NanoFilt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'NanoFilt.egg-info/SOURCES.txt' running install_lib creating /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages creating /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/scripts copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/scripts/test.sh -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/scripts copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/scripts/timefilt.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/scripts copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/scripts/get_read_ends.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/scripts creating /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt creating /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt/__pycache__ copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt/__pycache__/version.cpython-312.pyc -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt/__pycache__ copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt/__pycache__ copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt/version.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt/NanoFilt.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt/__init__.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt/utils.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/scripts/timefilt.py to timefilt.cpython-312.pyc byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/scripts/get_read_ends.py to get_read_ends.cpython-312.pyc byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt/version.py to version.cpython-312.pyc byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt/NanoFilt.py to NanoFilt.cpython-312.pyc byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt/utils.py to utils.cpython-312.pyc running install_egg_info Copying NanoFilt.egg-info to /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/NanoFilt-2.8.0.egg-info Skipping SOURCES.txt running install_scripts Installing NanoFilt script to /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/bin dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/nanofilt-2.8.0' dh_installexamples find debian -name __pycache__ -type d | xargs rm -rf find debian/nanofilt/usr/lib/python* -name scripts -type d | xargs rm -rf make[1]: Leaving directory '/build/reproducible-path/nanofilt-2.8.0' dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'nanofilt' in '../nanofilt_2.8.0-1_all.deb'. dpkg-genbuildinfo --build=binary -O../nanofilt_2.8.0-1_arm64.buildinfo dpkg-genchanges --build=binary -O../nanofilt_2.8.0-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1991288 and its subdirectories I: Current time: Tue Jan 21 01:12:25 -12 2025 I: pbuilder-time-stamp: 1737465145 Tue Jan 21 13:12:35 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink01-arm64.debian.net. Tue Jan 21 13:12:35 UTC 2025 I: Preparing to do remote build '2' on codethink01-arm64.debian.net. Tue Jan 21 13:12:35 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink01-arm64.debian.net is marked as down. Tue Jan 21 13:12:35 UTC 2025 - checking via ssh if codethink01-arm64.debian.net is up. removed '/tmp/read-only-fs-test-6Zrl50' ==================================================================================== Mon Feb 23 19:35:36 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink01-arm64, called using "2 nanofilt trixie /srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT 2.8.0-1" as arguments. Mon Feb 23 19:35:36 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-UaGjUyNZ" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Feb 23 19:35:36 UTC 2026 I: Downloading source for trixie/nanofilt=2.8.0-1 Reading package lists... NOTICE: 'nanofilt' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/nanofilt.git Please use: git clone https://salsa.debian.org/med-team/nanofilt.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 63.9 MB of source archives. Get:1 http://deb.debian.org/debian trixie/main nanofilt 2.8.0-1 (dsc) [1439 B] Get:2 http://deb.debian.org/debian trixie/main nanofilt 2.8.0-1 (tar) [19.0 kB] Get:3 http://deb.debian.org/debian trixie/main nanofilt 2.8.0-1 (diff) [63.9 MB] Fetched 63.9 MB in 0s (181 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'nanofilt' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/nanofilt.git Please use: git clone https://salsa.debian.org/med-team/nanofilt.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 63.9 MB of source archives. Get:1 http://deb.debian.org/debian trixie/main nanofilt 2.8.0-1 (dsc) [1439 B] Get:2 http://deb.debian.org/debian trixie/main nanofilt 2.8.0-1 (tar) [19.0 kB] Get:3 http://deb.debian.org/debian trixie/main nanofilt 2.8.0-1 (diff) [63.9 MB] Fetched 63.9 MB in 0s (181 MB/s) Download complete and in download only mode ============================================================================= Re-Building nanofilt in trixie on arm64 on codethink01-arm64 now. Date: Mon Feb 23 19:35:36 GMT 2026 Date UTC: Mon Feb 23 19:35:36 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT/pbuilderrc_Su3d + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' nanofilt = debian-installer -o nanofilt = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' nanofilt = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT/pbuilderrc_Su3d --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT/b2 --logfile b2/build.log nanofilt_2.8.0-1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Tue Feb 24 09:35:37 +14 2026 I: pbuilder-time-stamp: 1771875337 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [nanofilt_2.8.0-1.dsc] I: copying [./nanofilt_2.8.0.orig.tar.gz] I: copying [./nanofilt_2.8.0-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./nanofilt_2.8.0-1.dsc: unsupported subcommand dpkg-source: info: extracting nanofilt in nanofilt-2.8.0 dpkg-source: info: unpacking nanofilt_2.8.0.orig.tar.gz dpkg-source: info: unpacking nanofilt_2.8.0-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2570252/tmp/hooks/D01_modify_environment starting debug: Running on codethink01-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Feb 23 19:35 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2570252/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2570252/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=5b6b4b7d6069479cb87697468541f6a6 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2570252 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT/pbuilderrc_Su3d --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT/b2 --logfile b2/build.log nanofilt_2.8.0-1.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2570252/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), python3-all, python3-setuptools, dh-python, python3-biopython, python3-pandas, python3-flake8 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19970 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-flake8; however: Package python3-flake8 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-biopython{a} python3-cairo{a} python3-chardet{a} python3-dateutil{a} python3-flake8{a} python3-freetype{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-mccabe{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pkg-resources{a} python3-pycodestyle{a} python3-pyflakes{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ pyflakes3 python-biopython-doc python3-bottleneck python3-bs4 python3-html5lib python3-jinja2 python3-lxml python3-matplotlib python3-numexpr python3-odf python3-olefile python3-openpyxl python3-scipy python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 132 newly installed, 0 to remove and 0 not upgraded. Need to get 73.5 MB of archives. After unpacking 310 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.8-5 [810 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.8-5 [1934 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.12.8-1 [26.9 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-6 [257 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 13 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.8-5 [1904 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.8-5 [677 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.12.8-1 [9788 B] Get: 23 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.12.8-1 [27.9 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libpython3.13-minimal arm64 3.13.1-3 [852 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 python3.13-minimal arm64 3.13.1-3 [1990 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 sgml-base all 1.31 [15.4 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-4 [198 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-1 [91.6 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-4 [723 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.23 [90.6 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-2 [539 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 48 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-4 [1532 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.23 [919 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 63 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 75.6.0-1 [720 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20250108 [113 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libfontenc1 arm64 1:1.1.8-1+b2 [22.5 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.44-3 [273 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+23.2 [216 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 xfonts-utils arm64 1:7.7+7 [89.3 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 79 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-2 [317 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.0-4 [98.7 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-2 [386 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b3 [27.2 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libcairo2 arm64 1.18.2-2 [483 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.23-1+b1 [42.5 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-12 [361 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.82.4-2 [1413 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 10.2.0-1 [443 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libimagequant0 arm64 2.18.0-1+b2 [34.6 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.0-4 [1812 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 libopenjp2-7 arm64 2.5.0-2+b4 [185 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 libpython3.13-stdlib arm64 3.13.1-3 [1912 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 libraqm0 arm64 0.10.2-1 [13.6 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [113 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB] Get: 113 http://deb.debian.org/debian trixie/main arm64 python3.13 arm64 3.13.1-3 [740 kB] Get: 114 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.12.8-1 [1048 B] Get: 115 http://deb.debian.org/debian trixie/main arm64 python3-numpy arm64 1:1.26.4+ds-12 [3816 kB] Get: 116 http://deb.debian.org/debian trixie/main arm64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 117 http://deb.debian.org/debian trixie/main arm64 python3-pil arm64 10.4.0-1.1 [498 kB] Get: 118 http://deb.debian.org/debian trixie/main arm64 python3-cairo arm64 1.26.1-2+b1 [130 kB] Get: 119 http://deb.debian.org/debian trixie/main arm64 python3-freetype all 2.5.1-1 [89.3 kB] Get: 120 http://deb.debian.org/debian trixie/main arm64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 121 http://deb.debian.org/debian trixie/main arm64 python3-reportlab all 4.2.5-1 [1117 kB] Get: 122 http://deb.debian.org/debian trixie/main arm64 xml-core all 0.19 [20.1 kB] Get: 123 http://deb.debian.org/debian trixie/main arm64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 124 http://deb.debian.org/debian trixie/main arm64 python3-biopython arm64 1.84+dfsg-4+b1 [1644 kB] Get: 125 http://deb.debian.org/debian trixie/main arm64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 126 http://deb.debian.org/debian trixie/main arm64 python3-mccabe all 0.7.0-1 [10.5 kB] Get: 127 http://deb.debian.org/debian trixie/main arm64 python3-pycodestyle all 2.12.1-2 [39.7 kB] Get: 128 http://deb.debian.org/debian trixie/main arm64 python3-pyflakes all 3.2.0-2 [57.2 kB] Get: 129 http://deb.debian.org/debian trixie/main arm64 python3-flake8 all 7.1.1-3 [56.3 kB] Get: 130 http://deb.debian.org/debian trixie/main arm64 python3-tz all 2024.2-1 [31.0 kB] Get: 131 http://deb.debian.org/debian trixie/main arm64 python3-pandas-lib arm64 2.2.3+dfsg-5+b1 [6028 kB] Get: 132 http://deb.debian.org/debian trixie/main arm64 python3-pandas all 2.2.3+dfsg-5 [3096 kB] Fetched 73.5 MB in 0s (233 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19970 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-5_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.8-5) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.8-5_arm64.deb ... Unpacking python3.12-minimal (3.12.8-5) ... Setting up libpython3.12-minimal:arm64 (3.12.8-5) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-5) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20290 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.8-1_arm64.deb ... Unpacking python3-minimal (3.12.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-6_all.deb ... Unpacking tzdata (2024b-6) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../04-libffi8_3.4.6-1_arm64.deb ... Unpacking libffi8:arm64 (3.4.6-1) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../05-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../06-libcom-err2_1.47.2-1_arm64.deb ... 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Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ... Selecting previously unselected package libwebpmux3:arm64. Preparing to unpack .../089-libwebpmux3_1.5.0-0.1_arm64.deb ... Unpacking libwebpmux3:arm64 (1.5.0-0.1) ... Selecting previously unselected package python3.13. Preparing to unpack .../090-python3.13_3.13.1-3_arm64.deb ... Unpacking python3.13 (3.13.1-3) ... Selecting previously unselected package python3-all. Preparing to unpack .../091-python3-all_3.12.8-1_arm64.deb ... Unpacking python3-all (3.12.8-1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../092-python3-numpy_1%3a1.26.4+ds-12_arm64.deb ... Unpacking python3-numpy (1:1.26.4+ds-12) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../093-python3-chardet_5.2.0+dfsg-2_all.deb ... Unpacking python3-chardet (5.2.0+dfsg-2) ... Selecting previously unselected package python3-pil:arm64. Preparing to unpack .../094-python3-pil_10.4.0-1.1_arm64.deb ... 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Selecting previously unselected package python3-biopython. Preparing to unpack .../101-python3-biopython_1.84+dfsg-4+b1_arm64.deb ... Unpacking python3-biopython (1.84+dfsg-4+b1) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../102-python3-dateutil_2.9.0-3_all.deb ... Unpacking python3-dateutil (2.9.0-3) ... Selecting previously unselected package python3-mccabe. Preparing to unpack .../103-python3-mccabe_0.7.0-1_all.deb ... Unpacking python3-mccabe (0.7.0-1) ... Selecting previously unselected package python3-pycodestyle. Preparing to unpack .../104-python3-pycodestyle_2.12.1-2_all.deb ... Unpacking python3-pycodestyle (2.12.1-2) ... Selecting previously unselected package python3-pyflakes. Preparing to unpack .../105-python3-pyflakes_3.2.0-2_all.deb ... Unpacking python3-pyflakes (3.2.0-2) ... Selecting previously unselected package python3-flake8. Preparing to unpack .../106-python3-flake8_7.1.1-3_all.deb ... Unpacking python3-flake8 (7.1.1-3) ... Selecting previously unselected package python3-tz. Preparing to unpack .../107-python3-tz_2024.2-1_all.deb ... Unpacking python3-tz (2024.2-1) ... Selecting previously unselected package python3-pandas-lib:arm64. Preparing to unpack .../108-python3-pandas-lib_2.2.3+dfsg-5+b1_arm64.deb ... Unpacking python3-pandas-lib:arm64 (2.2.3+dfsg-5+b1) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../109-python3-pandas_2.2.3+dfsg-5_all.deb ... Unpacking python3-pandas (2.2.3+dfsg-5) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libgraphite2-3:arm64 (1.3.14-2+b1) ... Setting up liblcms2-2:arm64 (2.16-2) ... Setting up libpixman-1-0:arm64 (0.44.0-3) ... Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... Setting up libxau6:arm64 (1:1.0.11-1) ... Setting up libxdmcp6:arm64 (1:1.1.5-1) ... Setting up libkeyutils1:arm64 (1.6.3-4) ... Setting up libxcb1:arm64 (1.17.0-2+b1) ... Setting up libicu72:arm64 (72.1-6) ... Setting up liblerc4:arm64 (4.0.0+ds-5) ... Setting up bsdextrautils (2.40.4-1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libxcb-render0:arm64 (1.17.0-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.23) ... Setting up libbrotli1:arm64 (1.1.0-2+b6) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up x11-common (1:7.7+23.2) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libdeflate0:arm64 (1.23-1+b1) ... Setting up gettext-base (0.22.5-4) ... Setting up m4 (1.4.19-5) ... Setting up libxcb-shm0:arm64 (1.17.0-2+b1) ... Setting up libcom-err2:arm64 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libjbig0:arm64 (2.1-6.1+b2) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up tzdata (2024b-6) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Feb 23 19:36:02 UTC 2026. Universal Time is now: Mon Feb 23 19:36:02 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpython3.13-minimal:arm64 (3.13.1-3) ... Setting up libfontenc1:arm64 (1:1.1.8-1+b2) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:arm64 (1.0.16-1) ... Setting up libimagequant0:arm64 (2.18.0-1+b2) ... Setting up libunistring5:arm64 (1.3-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:arm64 (1.6.44-3) ... Setting up autopoint (0.22.5-4) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up libgfortran5:arm64 (14.2.0-12) ... Setting up autoconf (2.72-3) ... Setting up libwebp7:arm64 (1.5.0-0.1) ... Setting up libffi8:arm64 (3.4.6-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:arm64 (4.5.1+git230720-5) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libopenjp2-7:arm64 (2.5.0-2+b4) ... Setting up python3.13-minimal (3.13.1-3) ... Setting up libx11-6:arm64 (2:1.8.10-2) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libwebpmux3:arm64 (1.5.0-0.1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.22.5-4) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b3) ... Setting up libtool (2.5.4-2) ... Setting up fontconfig-config (2.15.0-2) ... Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... Setting up libxext6:arm64 (2:1.3.4-1+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libglib2.0-0t64:arm64 (2.82.4-2) ... No schema files found: doing nothing. Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-7) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:arm64 (10.2.0-1) ... Setting up libfontconfig1:arm64 (2.15.0-2) ... Setting up libpython3.13-stdlib:arm64 (3.13.1-3) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.1-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:arm64 (1.18.2-2) ... Setting up libraqm0:arm64 (0.10.2-1) ... Setting up libnsl2:arm64 (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:arm64 (3.12.8-5) ... Setting up python3.12 (3.12.8-5) ... Setting up debhelper (13.23) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up libpython3-stdlib:arm64 (3.12.8-1) ... Setting up python3 (3.12.8-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-freetype (2.5.1-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-tz (2024.2-1) ... Setting up python3-pil:arm64 (10.4.0-1.1) ... Setting up python3-pycodestyle (2.12.1-2) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-mccabe (0.7.0-1) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-cairo (1.26.1-2+b1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.12.8-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-reportlab (4.2.5-1) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up python3-setuptools (75.6.0-1) ... Setting up python3-pyflakes (3.2.0-2) ... Setting up python3-flake8 (7.1.1-3) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up dh-python (6.20250108) ... Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-5+b1) ... Setting up python3-pandas (2.2.3+dfsg-5) ... Processing triggers for libc-bin (2.40-5) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.84+dfsg-4+b1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2570252/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/2570252/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/nanofilt-2.8.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../nanofilt_2.8.0-1_source.changes dpkg-buildpackage: info: source package nanofilt dpkg-buildpackage: info: source version 2.8.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean running clean removing '/build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it I: pybuild base:311: python3.12 setup.py clean running clean removing '/build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config running config I: pybuild base:311: python3.12 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py build running build running build_py creating /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt copying nanofilt/utils.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt copying nanofilt/__init__.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt copying nanofilt/NanoFilt.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt copying nanofilt/version.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt creating /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/scripts copying scripts/get_read_ends.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/scripts copying scripts/timefilt.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/scripts running egg_info creating NanoFilt.egg-info writing NanoFilt.egg-info/PKG-INFO writing dependency_links to NanoFilt.egg-info/dependency_links.txt writing entry points to NanoFilt.egg-info/entry_points.txt writing requirements to NanoFilt.egg-info/requires.txt writing top-level names to NanoFilt.egg-info/top_level.txt writing manifest file 'NanoFilt.egg-info/SOURCES.txt' reading manifest file 'NanoFilt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'NanoFilt.egg-info/SOURCES.txt' copying scripts/test.sh -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/scripts I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt copying nanofilt/utils.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt copying nanofilt/__init__.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt copying nanofilt/NanoFilt.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt copying nanofilt/version.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt creating /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/scripts copying scripts/get_read_ends.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/scripts copying scripts/timefilt.py -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/scripts running egg_info writing NanoFilt.egg-info/PKG-INFO writing dependency_links to NanoFilt.egg-info/dependency_links.txt writing entry points to NanoFilt.egg-info/entry_points.txt writing requirements to NanoFilt.egg-info/requires.txt writing top-level names to NanoFilt.egg-info/top_level.txt reading manifest file 'NanoFilt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'NanoFilt.egg-info/SOURCES.txt' copying scripts/test.sh -> /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/scripts dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build; python3.13 -m unittest discover -v -k-pytest ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN I: pybuild base:311: cd /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build; python3.12 -m unittest discover -v -k-pytest ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/nanofilt/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py install --root /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt --install-scripts=/usr/bin/ running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing NanoFilt.egg-info/PKG-INFO writing dependency_links to NanoFilt.egg-info/dependency_links.txt writing entry points to NanoFilt.egg-info/entry_points.txt writing requirements to NanoFilt.egg-info/requires.txt writing top-level names to NanoFilt.egg-info/top_level.txt reading manifest file 'NanoFilt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'NanoFilt.egg-info/SOURCES.txt' running install_lib creating /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages creating /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/scripts copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/scripts/test.sh -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/scripts copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/scripts/timefilt.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/scripts copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/scripts/get_read_ends.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/scripts creating /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt creating /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt/__pycache__ copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt/__pycache__ copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt/__pycache__ copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt/version.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt/NanoFilt.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt/__init__.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.13/build/nanofilt/utils.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/scripts/timefilt.py to timefilt.cpython-313.pyc byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/scripts/get_read_ends.py to get_read_ends.cpython-313.pyc byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt/version.py to version.cpython-313.pyc byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt/NanoFilt.py to NanoFilt.cpython-313.pyc byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/nanofilt/utils.py to utils.cpython-313.pyc running install_egg_info Copying NanoFilt.egg-info to /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.13/dist-packages/NanoFilt-2.8.0.egg-info Skipping SOURCES.txt running install_scripts Installing NanoFilt script to /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/bin I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt --install-scripts=/usr/bin/ running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing NanoFilt.egg-info/PKG-INFO writing dependency_links to NanoFilt.egg-info/dependency_links.txt writing entry points to NanoFilt.egg-info/entry_points.txt writing requirements to NanoFilt.egg-info/requires.txt writing top-level names to NanoFilt.egg-info/top_level.txt reading manifest file 'NanoFilt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'NanoFilt.egg-info/SOURCES.txt' running install_lib creating /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages creating /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/scripts copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/scripts/test.sh -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/scripts copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/scripts/timefilt.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/scripts copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/scripts/get_read_ends.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/scripts creating /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt creating /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt/__pycache__ copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt/__pycache__/version.cpython-312.pyc -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt/__pycache__ copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt/__pycache__ copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt/version.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt/NanoFilt.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt/__init__.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt copying /build/reproducible-path/nanofilt-2.8.0/.pybuild/cpython3_3.12/build/nanofilt/utils.py -> /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/scripts/timefilt.py to timefilt.cpython-312.pyc byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/scripts/get_read_ends.py to get_read_ends.cpython-312.pyc byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt/version.py to version.cpython-312.pyc byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt/NanoFilt.py to NanoFilt.cpython-312.pyc byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/nanofilt/utils.py to utils.cpython-312.pyc running install_egg_info Copying NanoFilt.egg-info to /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/lib/python3.12/dist-packages/NanoFilt-2.8.0.egg-info Skipping SOURCES.txt running install_scripts Installing NanoFilt script to /build/reproducible-path/nanofilt-2.8.0/debian/nanofilt/usr/bin dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/nanofilt-2.8.0' dh_installexamples find debian -name __pycache__ -type d | xargs rm -rf find debian/nanofilt/usr/lib/python* -name scripts -type d | xargs rm -rf make[1]: Leaving directory '/build/reproducible-path/nanofilt-2.8.0' dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'nanofilt' in '../nanofilt_2.8.0-1_all.deb'. dpkg-genbuildinfo --build=binary -O../nanofilt_2.8.0-1_arm64.buildinfo dpkg-genchanges --build=binary -O../nanofilt_2.8.0-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2570252/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2570252/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2570252 and its subdirectories I: Current time: Tue Feb 24 09:38:00 +14 2026 I: pbuilder-time-stamp: 1771875480 + false + set +x Mon Feb 23 19:38:00 UTC 2026 I: Signing ./b2/nanofilt_2.8.0-1_arm64.buildinfo as nanofilt_2.8.0-1_arm64.buildinfo.asc Mon Feb 23 19:38:00 UTC 2026 I: Signed ./b2/nanofilt_2.8.0-1_arm64.buildinfo as ./b2/nanofilt_2.8.0-1_arm64.buildinfo.asc Mon Feb 23 19:38:00 UTC 2026 - build #2 for nanofilt/trixie/arm64 on codethink01-arm64 done. Starting cleanup. All cleanup done. Mon Feb 23 19:38:00 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-UaGjUyNZ, removing. /srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT: total 88 drwxr-xr-x 2 jenkins jenkins 4096 Jan 21 13:12 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jan 21 13:15 b2 -rw-r--r-- 1 jenkins jenkins 1439 Dec 31 2022 nanofilt_2.8.0-1.dsc -rw------- 1 jenkins jenkins 72112 Jan 21 13:12 rbuildlog.rvH2Win /srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT/b1: total 62636 -rw-r--r-- 1 jenkins jenkins 69260 Jan 21 13:12 build.log -rw-r--r-- 1 jenkins jenkins 63923836 Jan 21 13:12 nanofilt_2.8.0-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1439 Jan 21 13:12 nanofilt_2.8.0-1.dsc -rw-r--r-- 1 jenkins jenkins 12452 Jan 21 13:12 nanofilt_2.8.0-1_all.deb -rw-r--r-- 1 jenkins jenkins 7807 Jan 21 13:12 nanofilt_2.8.0-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 8689 Jan 21 13:12 nanofilt_2.8.0-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1097 Jan 21 13:12 nanofilt_2.8.0-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 1526 Jan 21 13:12 nanofilt_2.8.0-1_source.changes -rw-r--r-- 1 jenkins jenkins 19020 Jan 21 13:12 nanofilt_2.8.0.orig.tar.gz /srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT/b2: total 62640 -rw-r--r-- 1 jenkins jenkins 71203 Jan 21 13:15 build.log -rw-r--r-- 1 jenkins jenkins 63923836 Jan 21 13:15 nanofilt_2.8.0-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1439 Jan 21 13:15 nanofilt_2.8.0-1.dsc -rw-r--r-- 1 jenkins jenkins 12452 Jan 21 13:15 nanofilt_2.8.0-1_all.deb -rw-r--r-- 1 jenkins jenkins 7807 Jan 21 13:15 nanofilt_2.8.0-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 8689 Jan 21 13:15 nanofilt_2.8.0-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1097 Jan 21 13:15 nanofilt_2.8.0-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 1526 Jan 21 13:15 nanofilt_2.8.0-1_source.changes -rw-r--r-- 1 jenkins jenkins 19020 Jan 21 13:15 nanofilt_2.8.0.orig.tar.gz Tue Jan 21 13:15:08 UTC 2025 I: Deleting $TMPDIR on codethink01-arm64.debian.net. Tue Jan 21 13:15:09 UTC 2025 I: nanofilt_2.8.0-1_arm64.changes: Format: 1.8 Date: Sat, 31 Dec 2022 17:54:16 +0530 Source: nanofilt Binary: nanofilt Architecture: all Version: 2.8.0-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: nanofilt - filtering and trimming of long read sequencing data Changes: nanofilt (2.8.0-1) unstable; urgency=medium . * Team Upload. * New upstream version 2.8.0 * Bump Standards-Version to 4.6.2 (no changes needed) Checksums-Sha1: 1f95350ec28dae84d039d320826c8d0071d4e64d 12452 nanofilt_2.8.0-1_all.deb 3f4be3c1862f963470aeb09a3c8cd3c9e7f7c93b 7807 nanofilt_2.8.0-1_arm64.buildinfo Checksums-Sha256: a0907af92a84920e227e19a04f3aed180da93fd1a25cb40db11406ad844f7465 12452 nanofilt_2.8.0-1_all.deb 276bc1dffc6ce3437ee9914add4354308946de5bed2b28de5306875af7280ac6 7807 nanofilt_2.8.0-1_arm64.buildinfo Files: 3e3802dfab76d289b3f2169644d0445d 12452 science optional nanofilt_2.8.0-1_all.deb d639657c34ca259956cbe76ec0f18f6b 7807 science optional nanofilt_2.8.0-1_arm64.buildinfo removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/nanofilt_2.8.0-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/nanofilt_2.8.0-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/nanofilt_2.8.0-1.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/nanofilt_2.8.0-1.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/arm64/nanofilt_2.8.0-1_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/nanofilt_2.8.0-1.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-01-21 13:12:26.469122141 +0000 +++ b2/build.log 2025-01-21 13:15:02.338116957 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Jan 21 01:07:32 -12 2025 -I: pbuilder-time-stamp: 1737464852 +I: Current time: Tue Feb 24 09:35:37 +14 2026 +I: pbuilder-time-stamp: 1771875337 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -22,52 +22,84 @@ dpkg-source: info: unpacking nanofilt_2.8.0-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1991288/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2570252/tmp/hooks/D01_modify_environment starting +debug: Running on codethink01-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 23 19:35 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2570252/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2570252/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='8e795f4683dd4cac91f1a034485a724b' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1991288' - PS1='# ' - PS2='> ' + INVOCATION_ID=5b6b4b7d6069479cb87697468541f6a6 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2570252 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT/pbuilderrc_YFSV --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT/b1 --logfile b1/build.log nanofilt_2.8.0-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT/pbuilderrc_Su3d --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT/b2 --logfile b2/build.log nanofilt_2.8.0-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1991288/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2570252/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -247,7 +279,7 @@ Get: 130 http://deb.debian.org/debian trixie/main arm64 python3-tz all 2024.2-1 [31.0 kB] Get: 131 http://deb.debian.org/debian trixie/main arm64 python3-pandas-lib arm64 2.2.3+dfsg-5+b1 [6028 kB] Get: 132 http://deb.debian.org/debian trixie/main arm64 python3-pandas all 2.2.3+dfsg-5 [3096 kB] -Fetched 73.5 MB in 1s (110 MB/s) +Fetched 73.5 MB in 0s (233 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19970 files and directories currently installed.) @@ -693,8 +725,8 @@ Setting up tzdata (2024b-6) ... Current default time zone: 'Etc/UTC' -Local time is now: Tue Jan 21 13:08:36 UTC 2025. -Universal Time is now: Tue Jan 21 13:08:36 UTC 2025. +Local time is now: Mon Feb 23 19:36:02 UTC 2026. +Universal Time is now: Mon Feb 23 19:36:02 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpython3.13-minimal:arm64 (3.13.1-3) ... @@ -810,7 +842,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/nanofilt-2.8.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../nanofilt_2.8.0-1_source.changes +I: user script /srv/workspace/pbuilder/2570252/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/2570252/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/nanofilt-2.8.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../nanofilt_2.8.0-1_source.changes dpkg-buildpackage: info: source package nanofilt dpkg-buildpackage: info: source version 2.8.0-1 dpkg-buildpackage: info: source distribution unstable @@ -1039,12 +1075,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2570252/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2570252/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1991288 and its subdirectories -I: Current time: Tue Jan 21 01:12:25 -12 2025 -I: pbuilder-time-stamp: 1737465145 +I: removing directory /srv/workspace/pbuilder/2570252 and its subdirectories +I: Current time: Tue Feb 24 09:38:00 +14 2026 +I: pbuilder-time-stamp: 1771875480 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/nanofilt_2.8.0-1.diff: 66.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/nanofilt_2.8.0-1.diff.gz b2/build.log: 83.0% -- replaced with stdout Compressing the 1st log... b1/build.log: 83.5% -- replaced with stdout Tue Jan 21 13:15:10 UTC 2025 I: diffoscope 285 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_nanofilt_trixie_arm64_1737465310 + touch /var/log/reproducible-builds/diffoscope_stamp_nanofilt_trixie_arm64_1737465310 + RESULT=0 + systemd-run '--description=diffoscope on nanofilt/2.8.0-1 in trixie/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_6-76466 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT --run-session -c jenkins-reproducible-trixie-diffoscope-05afe459-2daf-4c83-987d-d197b3ddbb29 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT/dbd-tmp-DPkjdFF ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT/nanofilt_2.8.0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT/nanofilt_2.8.0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT/nanofilt_2.8.0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT/b1/nanofilt_2.8.0-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT/b2/nanofilt_2.8.0-1_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_6-76466.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT/nanofilt_2.8.0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT/nanofilt_2.8.0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT/nanofilt_2.8.0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT/b1/nanofilt_2.8.0-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.etMhhmUT/b2/nanofilt_2.8.0-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.339s) 0.339s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.013s) 0.013s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 652ms CPU time consumed: 654ms __ _ _ _ _ __ __ _ _ __ ___ / _(_) | |_ | '_ \ / _` | '_ \ / _ \| |_| | | __| | | | | (_| | | | | (_) | _| | | |_ |_| |_|\__,_|_| |_|\___/|_| |_|_|\__| Tue Jan 21 13:15:12 UTC 2025 I: diffoscope 285 found no differences in the changes files, and a .buildinfo file also exists. Tue Jan 21 13:15:12 UTC 2025 I: nanofilt from trixie built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-01-21 13:15:12] INFO: Starting at 2025-01-21 13:15:12.666426 [2025-01-21 13:15:12] INFO: Generating the pages of 1 package(s) [2025-01-21 13:15:12] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/arm64/nanofilt didn't produce a buildlog, even though it has been built. [2025-01-21 13:15:13] INFO: Finished at 2025-01-21 13:15:13.000676, took: 0:00:00.334257 Tue Jan 21 13:15:13 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/arm64/nanofilt.html Tue Jan 21 13:15:13 UTC 2025 I: Submitting .buildinfo files to external archives: Tue Jan 21 13:15:13 UTC 2025 I: Submitting 12K b1/nanofilt_2.8.0-1_arm64.buildinfo.asc https://buildinfo.debian.net/3f4be3c1862f963470aeb09a3c8cd3c9e7f7c93b/nanofilt_2.8.0-1_all Tue Jan 21 13:15:13 UTC 2025 I: Submitting 12K b2/nanofilt_2.8.0-1_arm64.buildinfo.asc https://buildinfo.debian.net/6cd6620d4cb4f6cb8f41e213a5d1074fca796aa4/nanofilt_2.8.0-1_all Tue Jan 21 13:15:14 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Jan 21 13:15:14 UTC 2025 I: Done submitting .buildinfo files. Tue Jan 21 13:15:14 UTC 2025 I: Removing signed nanofilt_2.8.0-1_arm64.buildinfo.asc files: removed './b1/nanofilt_2.8.0-1_arm64.buildinfo.asc' removed './b2/nanofilt_2.8.0-1_arm64.buildinfo.asc' 1737465314 arm64 trixie nanofilt Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/nanofilt_2.8.0-1.rbuild.log: 81.8% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/nanofilt_2.8.0-1.rbuild.log.gz [2025-01-21 13:15:14] INFO: Starting at 2025-01-21 13:15:14.978991 [2025-01-21 13:15:15] INFO: Generating the pages of 1 package(s) [2025-01-21 13:15:15] INFO: Finished at 2025-01-21 13:15:15.318252, took: 0:00:00.339269 All cleanup done. Tue Jan 21 13:15:15 UTC 2025 - total duration: 0h 8m 0s. Tue Jan 21 13:15:15 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-gCf9jTYt, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 8min 3.556s CPU time consumed: 9.211s