Running as unit: rb-build-arm64_6-80184.service ==================================================================================== Sat Feb 22 00:17:16 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_6) on jenkins, called using "codethink03-arm64 codethink04-arm64" as arguments. Sat Feb 22 00:17:16 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-hKLIvnm4" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Feb 22 00:17:16 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Sat Feb 22 00:17:16 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-42v6xe' Sat Feb 22 00:17:17 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Sat Feb 22 00:17:17 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-wnHyQ4' ok, let's check if unicycler is building anywhere yet… ok, unicycler is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of unicycler in trixie on arm64 on jenkins now. 1st build will be done on codethink03-arm64.debian.net. 2nd build will be done on codethink04-arm64.debian.net. ============================================================================= Sat Feb 22 00:17:37 UTC 2025 I: starting to build unicycler/trixie/arm64 on jenkins on '2025-02-22 00:17' Sat Feb 22 00:17:37 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_6/80184/console.log 1740183457 arm64 trixie unicycler Sat Feb 22 00:17:37 UTC 2025 I: Downloading source for trixie/unicycler=0.5.1+dfsg-3 --2025-02-22 00:17:37-- http://deb.debian.org/debian/pool/main/u/unicycler/unicycler_0.5.1%2bdfsg-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2389 (2.3K) [text/prs.lines.tag] Saving to: ‘unicycler_0.5.1+dfsg-3.dsc’ 0K .. 100% 295M=0s 2025-02-22 00:17:37 (295 MB/s) - ‘unicycler_0.5.1+dfsg-3.dsc’ saved [2389/2389] --2025-02-22 00:17:37-- http://deb.debian.org/debian/pool/main/u/unicycler/unicycler_0.5.1%2bdfsg-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2389 (2.3K) [text/prs.lines.tag] Saving to: ‘unicycler_0.5.1+dfsg-3.dsc’ 0K .. 100% 295M=0s 2025-02-22 00:17:37 (295 MB/s) - ‘unicycler_0.5.1+dfsg-3.dsc’ saved [2389/2389] Sat Feb 22 00:17:37 UTC 2025 I: unicycler_0.5.1+dfsg-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: unicycler Binary: unicycler, unicycler-data Architecture: any all Version: 0.5.1+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Liubov Chuprikova Homepage: https://github.com/rrwick/Unicycler Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/unicycler Vcs-Git: https://salsa.debian.org/med-team/unicycler.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@ Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools, default-jdk , bcftools, bowtie2 , miniasm, ncbi-blast+ , pilon , racon, samtools , spades (>= 3.14), libseqan2-dev, zlib1g-dev Package-List: unicycler deb science optional arch=any unicycler-data deb science optional arch=all Checksums-Sha1: 74c2faf619e98fc0db52308548185114eb302ede 14771244 unicycler_0.5.1+dfsg.orig.tar.xz 8631abef91c94f3b4b3549db953c93a95767ef27 12868 unicycler_0.5.1+dfsg-3.debian.tar.xz Checksums-Sha256: e4ff9b7bb236d3c1b43e97318f09d781428f7ae917b06dfe505c0d8da3ffad69 14771244 unicycler_0.5.1+dfsg.orig.tar.xz 399081dcea5f5dba5d2a72c51fd452c9e7fc265a3d8a20d003a7fcda3c4abd24 12868 unicycler_0.5.1+dfsg-3.debian.tar.xz Files: 22bef237ad14fd5fa44602f232e75a20 14771244 unicycler_0.5.1+dfsg.orig.tar.xz 49b9c91ad10f5af3b4c6fa3cb5e693cf 12868 unicycler_0.5.1+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmejyjwRHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBolJA/+NfguskHDOo2nn5hJTrvvKB0uf7i0XccE zMRoITqQs1gOXK02o4KN359LpTNzIGZDXVXsB0nAL3lIb7yHDxMXUjLhbImx6Eox 3beC3tja4bvJsuMutqjPzpPFvnlKKyLmfHfMp207LEXJlbKfYJqHzt3pXsuPCBjU Fv4C2bSg9b/97vR5eqe1DT5fO9bJyCx81l8R2sH7p11PkFa0uWuy93YgS8QKWtkn v1wodDHD2GoyC3vqv2q4rQ6wSBL3VQFVo9rFzQS8WZ9yI+sm7SBrZmXZExG6qmcn u0mI7IpAJ6fpPLc/nxcHkCAWeN2wHBipdsrQPEsqK900ym6EcuMNZ1ngr3zTuLuk kf2wO1JTR3zcsWm52GeFxSxwaJtBUQ4iPpPuOm7L7ztbSTAt29wlu876SRSrtNps 3/2OajCbk9Bax37HSPTUJa2ny+8HVCvny2Hx23rfdHhcQtWmepn3Oog3k9WoCqAn XU7A9ECJ5B6Smc9wRl/dRFN5GLHFtRIK7447YMQ8bj7heDYxJ3QB1J46fkpIIKa3 qj3+5P2lOZNYR+javInO65WVeIvurKzgU+YSiiHq2DjgoGXKuzMaTQUVgA1DFc8q r8B4p8DPLjdqP6V8IHhHIj10HggHJLns4ZFiPmzvmAx9LWXzKI9sZAKGVEZ0nW2n ycPZA/+3Y6E= =OJ0Q -----END PGP SIGNATURE----- Sat Feb 22 00:17:37 UTC 2025 I: Checking whether the package is not for us Sat Feb 22 00:17:37 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Sat Feb 22 00:17:37 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Sat Feb 22 00:17:37 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Sat Feb 22 00:17:37 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-sXDM4s' ==================================================================================== Fri Mar 27 06:40:39 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "1 unicycler trixie /srv/reproducible-results/rbuild-debian/r-b-build.ghxVSrjV 0.5.1+dfsg-3" as arguments. Fri Mar 27 06:40:39 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-Fim8VbKU" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Mar 27 06:40:39 UTC 2026 I: Downloading source for trixie/unicycler=0.5.1+dfsg-3 Reading package lists... NOTICE: 'unicycler' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/unicycler.git Please use: git clone https://salsa.debian.org/med-team/unicycler.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 14.8 MB of source archives. Get:1 http://deb.debian.org/debian trixie/main unicycler 0.5.1+dfsg-3 (dsc) [2389 B] Get:2 http://deb.debian.org/debian trixie/main unicycler 0.5.1+dfsg-3 (tar) [14.8 MB] Get:3 http://deb.debian.org/debian trixie/main unicycler 0.5.1+dfsg-3 (diff) [12.9 kB] Fetched 14.8 MB in 0s (67.9 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'unicycler' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/unicycler.git Please use: git clone https://salsa.debian.org/med-team/unicycler.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 14.8 MB of source archives. Get:1 http://deb.debian.org/debian trixie/main unicycler 0.5.1+dfsg-3 (dsc) [2389 B] Get:2 http://deb.debian.org/debian trixie/main unicycler 0.5.1+dfsg-3 (tar) [14.8 MB] Get:3 http://deb.debian.org/debian trixie/main unicycler 0.5.1+dfsg-3 (diff) [12.9 kB] Fetched 14.8 MB in 0s (67.9 MB/s) Download complete and in download only mode ============================================================================= Building unicycler in trixie on arm64 on codethink03-arm64 now. Date: Fri Mar 27 06:40:39 GMT 2026 Date UTC: Fri Mar 27 06:40:39 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Mar 26 18:40:40 -12 2026 I: pbuilder-time-stamp: 1774593640 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [unicycler_0.5.1+dfsg-3.dsc] I: copying [./unicycler_0.5.1+dfsg.orig.tar.xz] I: copying [./unicycler_0.5.1+dfsg-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./unicycler_0.5.1+dfsg-3.dsc: unsupported subcommand dpkg-source: info: extracting unicycler in unicycler-0.5.1+dfsg dpkg-source: info: unpacking unicycler_0.5.1+dfsg.orig.tar.xz dpkg-source: info: unpacking unicycler_0.5.1+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spades.patch dpkg-source: info: applying install_wo_extra_steps.patch dpkg-source: info: applying append_flags dpkg-source: info: applying leftover-syntax-warnings.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1317201/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='6b6093d4725745f6b22b1dd5bdf7ab78' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1317201' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ghxVSrjV/pbuilderrc_kM7y --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ghxVSrjV/b1 --logfile b1/build.log unicycler_0.5.1+dfsg-3.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1317201/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools, default-jdk, bcftools, bowtie2, miniasm, ncbi-blast+, pilon, racon, samtools, spades (>= 3.14), libseqan2-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19923 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on default-jdk; however: Package default-jdk is not installed. pbuilder-satisfydepends-dummy depends on bcftools; however: Package bcftools is not installed. pbuilder-satisfydepends-dummy depends on bowtie2; however: Package bowtie2 is not installed. pbuilder-satisfydepends-dummy depends on miniasm; however: Package miniasm is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+; however: Package ncbi-blast+ is not installed. pbuilder-satisfydepends-dummy depends on pilon; however: Package pilon is not installed. pbuilder-satisfydepends-dummy depends on racon; however: Package racon is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on spades (>= 3.14); however: Package spades is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev; however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bcftools{a} bowtie2{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} java-common{a} java-wrappers{a} junit4{a} libapache-pom-java{a} libapparmor1{a} libarchive-zip-perl{a} libasound2-data{a} libasound2t64{a} libatk-bridge2.0-0t64{a} libatk1.0-0t64{a} libatspi2.0-0t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libcairo-gobject2{a} libcairo2{a} libcloudproviders0{a} libcolord2{a} libcom-err2{a} libcommons-beanutils-java{a} libcommons-codec-java{a} libcommons-collections3-java{a} libcommons-collections4-java{a} libcommons-compress-java{a} libcommons-io-java{a} libcommons-jexl2-java{a} libcommons-lang-java{a} libcommons-lang3-java{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2t64{a} libcurl3t64-gnutls{a} libdatrie1{a} libdbus-1-3{a} libdconf1{a} libdebhelper-perl{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libedlib1{a} libelf1t64{a} libepoxy0{a} libexpat1{a} libezmorph-java{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgnutls30t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgtk-3-0t64{a} libgtk-3-common{a} libhamcrest-java{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libhtsjdk-java{a} libicu72{a} libidn2-0{a} libjaxen-java{a} libjbig0{a} libjpeg62-turbo{a} libjson-java{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libldap2{a} liblerc4{a} libllvm19{a} liblmdb0{a} libmagic-mgc{a} libmagic1t64{a} libmbedcrypto16{a} libmbedtls21{a} libmbedx509-7{a} libncbi-ngs3{a} libncbi-vdb3{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngs-java{a} libngs-jni{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libnspr4{a} libnss3{a} libp11-kit0{a} libpam-systemd{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhino-java{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libseqan2-dev{a} libsharpyuv0{a} libslf4j-java{a} libsnappy-java{a} libsnappy-jni{a} libsnappy1v5{a} libspoa7.0.0{a} libssh2-1t64{a} libsystemd-shared{a} libtasn1-6{a} libthai-data{a} libthai0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libvulkan1{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1{a} libwayland-server0{a} libwebp7{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxerces2-java{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxkbcommon0{a} libxml-commons-external-java{a} libxml-commons-resolver1.1-java{a} libxml2{a} libxom-java{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxtst6{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} miniasm{a} ncbi-blast+{a} ncbi-data{a} ncbi-vdb-data{a} netbase{a} openjdk-21-jdk{a} openjdk-21-jdk-headless{a} openjdk-21-jre{a} openjdk-21-jre-headless{a} openssl{a} pilon{a} po-debconf{a} procps{a} python3{a} python3-all{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} racon{a} readline-common{a} samtools{a} scala-library{a} sensible-utils{a} shared-mime-info{a} systemd{a} systemd-sysv{a} tzdata{a} unzip{a} x11-common{a} xkb-data{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf at-spi2-core chrony curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libatk-wrapper-java-jni libgdk-pixbuf2.0-bin libglib2.0-data libgpm2 libgtk-3-bin libkmod2 libldap-common libltdl-dev libmail-sendmail-perl libnss-systemd librsvg2-common libsasl2-modules libxt-dev linux-sysctl-defaults lynx mesa-vulkan-drivers minimap ntpsec openntpd psmisc publicsuffix python3-gffutils python3-matplotlib rampler systemd-cryptsetup systemd-timesyncd wget xdg-user-dirs 0 packages upgraded, 274 newly installed, 0 to remove and 0 not upgraded. Need to get 284 MB of archives. After unpacking 952 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: spades (>= 3.14) which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: adwaita-icon-theme{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bcftools{a} bowtie2{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} java-common{a} java-wrappers{a} junit4{a} libapache-pom-java{a} libapparmor1{a} libarchive-zip-perl{a} libasound2-data{a} libasound2t64{a} libatk-bridge2.0-0t64{a} libatk1.0-0t64{a} libatspi2.0-0t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libcairo-gobject2{a} libcairo2{a} libcloudproviders0{a} libcolord2{a} libcom-err2{a} libcommons-beanutils-java{a} libcommons-codec-java{a} libcommons-collections3-java{a} libcommons-collections4-java{a} libcommons-compress-java{a} libcommons-io-java{a} libcommons-jexl2-java{a} libcommons-lang-java{a} libcommons-lang3-java{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2t64{a} libcurl3t64-gnutls{a} libdatrie1{a} libdbus-1-3{a} libdconf1{a} libdebhelper-perl{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libedlib1{a} libelf1t64{a} libepoxy0{a} libexpat1{a} libezmorph-java{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgnutls30t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgtk-3-0t64{a} libgtk-3-common{a} libhamcrest-java{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libhtsjdk-java{a} libicu72{a} libidn2-0{a} libjaxen-java{a} libjbig0{a} libjpeg62-turbo{a} libjson-java{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libldap2{a} liblerc4{a} libllvm19{a} liblmdb0{a} libmagic-mgc{a} libmagic1t64{a} libmbedcrypto16{a} libmbedtls21{a} libmbedx509-7{a} libncbi-ngs3{a} libncbi-vdb3{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngs-java{a} libngs-jni{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libnspr4{a} libnss3{a} libp11-kit0{a} libpam-systemd{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhino-java{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libseqan2-dev{a} libsharpyuv0{a} libslf4j-java{a} libsnappy-java{a} libsnappy-jni{a} libsnappy1v5{a} libspoa7.0.0{a} libssh2-1t64{a} libsystemd-shared{a} libtasn1-6{a} libthai-data{a} libthai0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libvulkan1{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1{a} libwayland-server0{a} libwebp7{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxerces2-java{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxkbcommon0{a} libxml-commons-external-java{a} libxml-commons-resolver1.1-java{a} libxml2{a} libxom-java{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxtst6{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} miniasm{a} ncbi-blast+{a} ncbi-data{a} ncbi-vdb-data{a} netbase{a} openjdk-21-jdk{a} openjdk-21-jdk-headless{a} openjdk-21-jre{a} openjdk-21-jre-headless{a} openssl{a} pilon{a} po-debconf{a} procps{a} python3{a} python3-all{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} racon{a} readline-common{a} samtools{a} scala-library{a} sensible-utils{a} shared-mime-info{a} systemd{a} systemd-sysv{a} tzdata{a} unzip{a} x11-common{a} xkb-data{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf at-spi2-core chrony curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libatk-wrapper-java-jni libgdk-pixbuf2.0-bin libglib2.0-data libgpm2 libgtk-3-bin libkmod2 libldap-common libltdl-dev libmail-sendmail-perl libnss-systemd librsvg2-common libsasl2-modules libxt-dev linux-sysctl-defaults lynx mesa-vulkan-drivers minimap ntpsec openntpd psmisc publicsuffix python3-gffutils python3-matplotlib rampler systemd-cryptsetup systemd-timesyncd wget xdg-user-dirs 0 packages upgraded, 274 newly installed, 0 to remove and 0 not upgraded. Need to get 284 MB of archives. After unpacking 952 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1317201 and its subdirectories Starting cleanup. All cleanup done. Fri Mar 27 06:41:05 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-Fim8VbKU, removing. /srv/reproducible-results/rbuild-debian/r-b-build.ghxVSrjV: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 00:18 b1 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 00:17 b2 -rw------- 1 jenkins jenkins 3535 Feb 22 00:17 rbuildlog.ML9khfO -rw-r--r-- 1 jenkins jenkins 2389 Feb 5 20:42 unicycler_0.5.1+dfsg-3.dsc /srv/reproducible-results/rbuild-debian/r-b-build.ghxVSrjV/b1: total 20 -rw-r--r-- 1 jenkins jenkins 17810 Feb 22 00:18 build.log /srv/reproducible-results/rbuild-debian/r-b-build.ghxVSrjV/b2: total 0 Sat Feb 22 00:18:06 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Mar 26 18:40:40 -12 2026 I: pbuilder-time-stamp: 1774593640 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [unicycler_0.5.1+dfsg-3.dsc] I: copying [./unicycler_0.5.1+dfsg.orig.tar.xz] I: copying [./unicycler_0.5.1+dfsg-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./unicycler_0.5.1+dfsg-3.dsc: unsupported subcommand dpkg-source: info: extracting unicycler in unicycler-0.5.1+dfsg dpkg-source: info: unpacking unicycler_0.5.1+dfsg.orig.tar.xz dpkg-source: info: unpacking unicycler_0.5.1+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spades.patch dpkg-source: info: applying install_wo_extra_steps.patch dpkg-source: info: applying append_flags dpkg-source: info: applying leftover-syntax-warnings.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1317201/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='6b6093d4725745f6b22b1dd5bdf7ab78' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1317201' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ghxVSrjV/pbuilderrc_kM7y --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ghxVSrjV/b1 --logfile b1/build.log unicycler_0.5.1+dfsg-3.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1317201/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools, default-jdk, bcftools, bowtie2, miniasm, ncbi-blast+, pilon, racon, samtools, spades (>= 3.14), libseqan2-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19923 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on default-jdk; however: Package default-jdk is not installed. pbuilder-satisfydepends-dummy depends on bcftools; however: Package bcftools is not installed. pbuilder-satisfydepends-dummy depends on bowtie2; however: Package bowtie2 is not installed. pbuilder-satisfydepends-dummy depends on miniasm; however: Package miniasm is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+; however: Package ncbi-blast+ is not installed. pbuilder-satisfydepends-dummy depends on pilon; however: Package pilon is not installed. pbuilder-satisfydepends-dummy depends on racon; however: Package racon is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on spades (>= 3.14); however: Package spades is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev; however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bcftools{a} bowtie2{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} java-common{a} java-wrappers{a} junit4{a} libapache-pom-java{a} libapparmor1{a} libarchive-zip-perl{a} libasound2-data{a} libasound2t64{a} libatk-bridge2.0-0t64{a} libatk1.0-0t64{a} libatspi2.0-0t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libcairo-gobject2{a} libcairo2{a} libcloudproviders0{a} libcolord2{a} libcom-err2{a} libcommons-beanutils-java{a} libcommons-codec-java{a} libcommons-collections3-java{a} libcommons-collections4-java{a} libcommons-compress-java{a} libcommons-io-java{a} libcommons-jexl2-java{a} libcommons-lang-java{a} libcommons-lang3-java{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2t64{a} libcurl3t64-gnutls{a} libdatrie1{a} libdbus-1-3{a} libdconf1{a} libdebhelper-perl{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libedlib1{a} libelf1t64{a} libepoxy0{a} libexpat1{a} libezmorph-java{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgnutls30t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgtk-3-0t64{a} libgtk-3-common{a} libhamcrest-java{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libhtsjdk-java{a} libicu72{a} libidn2-0{a} libjaxen-java{a} libjbig0{a} libjpeg62-turbo{a} libjson-java{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libldap2{a} liblerc4{a} libllvm19{a} liblmdb0{a} libmagic-mgc{a} libmagic1t64{a} libmbedcrypto16{a} libmbedtls21{a} libmbedx509-7{a} libncbi-ngs3{a} libncbi-vdb3{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngs-java{a} libngs-jni{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libnspr4{a} libnss3{a} libp11-kit0{a} libpam-systemd{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhino-java{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libseqan2-dev{a} libsharpyuv0{a} libslf4j-java{a} libsnappy-java{a} libsnappy-jni{a} libsnappy1v5{a} libspoa7.0.0{a} libssh2-1t64{a} libsystemd-shared{a} libtasn1-6{a} libthai-data{a} libthai0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libvulkan1{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1{a} libwayland-server0{a} libwebp7{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxerces2-java{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxkbcommon0{a} libxml-commons-external-java{a} libxml-commons-resolver1.1-java{a} libxml2{a} libxom-java{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxtst6{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} miniasm{a} ncbi-blast+{a} ncbi-data{a} ncbi-vdb-data{a} netbase{a} openjdk-21-jdk{a} openjdk-21-jdk-headless{a} openjdk-21-jre{a} openjdk-21-jre-headless{a} openssl{a} pilon{a} po-debconf{a} procps{a} python3{a} python3-all{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} racon{a} readline-common{a} samtools{a} scala-library{a} sensible-utils{a} shared-mime-info{a} systemd{a} systemd-sysv{a} tzdata{a} unzip{a} x11-common{a} xkb-data{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf at-spi2-core chrony curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libatk-wrapper-java-jni libgdk-pixbuf2.0-bin libglib2.0-data libgpm2 libgtk-3-bin libkmod2 libldap-common libltdl-dev libmail-sendmail-perl libnss-systemd librsvg2-common libsasl2-modules libxt-dev linux-sysctl-defaults lynx mesa-vulkan-drivers minimap ntpsec openntpd psmisc publicsuffix python3-gffutils python3-matplotlib rampler systemd-cryptsetup systemd-timesyncd wget xdg-user-dirs 0 packages upgraded, 274 newly installed, 0 to remove and 0 not upgraded. Need to get 284 MB of archives. After unpacking 952 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: spades (>= 3.14) which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: adwaita-icon-theme{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bcftools{a} bowtie2{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} java-common{a} java-wrappers{a} junit4{a} libapache-pom-java{a} libapparmor1{a} libarchive-zip-perl{a} libasound2-data{a} libasound2t64{a} libatk-bridge2.0-0t64{a} libatk1.0-0t64{a} libatspi2.0-0t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libcairo-gobject2{a} libcairo2{a} libcloudproviders0{a} libcolord2{a} libcom-err2{a} libcommons-beanutils-java{a} libcommons-codec-java{a} libcommons-collections3-java{a} libcommons-collections4-java{a} libcommons-compress-java{a} libcommons-io-java{a} libcommons-jexl2-java{a} libcommons-lang-java{a} libcommons-lang3-java{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2t64{a} libcurl3t64-gnutls{a} libdatrie1{a} libdbus-1-3{a} libdconf1{a} libdebhelper-perl{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libedlib1{a} libelf1t64{a} libepoxy0{a} libexpat1{a} libezmorph-java{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgnutls30t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgtk-3-0t64{a} libgtk-3-common{a} libhamcrest-java{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libhtsjdk-java{a} libicu72{a} libidn2-0{a} libjaxen-java{a} libjbig0{a} libjpeg62-turbo{a} libjson-java{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libldap2{a} liblerc4{a} libllvm19{a} liblmdb0{a} libmagic-mgc{a} libmagic1t64{a} libmbedcrypto16{a} libmbedtls21{a} libmbedx509-7{a} libncbi-ngs3{a} libncbi-vdb3{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngs-java{a} libngs-jni{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libnspr4{a} libnss3{a} libp11-kit0{a} libpam-systemd{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhino-java{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libseqan2-dev{a} libsharpyuv0{a} libslf4j-java{a} libsnappy-java{a} libsnappy-jni{a} libsnappy1v5{a} libspoa7.0.0{a} libssh2-1t64{a} libsystemd-shared{a} libtasn1-6{a} libthai-data{a} libthai0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libvulkan1{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1{a} libwayland-server0{a} libwebp7{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxerces2-java{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxkbcommon0{a} libxml-commons-external-java{a} libxml-commons-resolver1.1-java{a} libxml2{a} libxom-java{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxtst6{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} miniasm{a} ncbi-blast+{a} ncbi-data{a} ncbi-vdb-data{a} netbase{a} openjdk-21-jdk{a} openjdk-21-jdk-headless{a} openjdk-21-jre{a} openjdk-21-jre-headless{a} openssl{a} pilon{a} po-debconf{a} procps{a} python3{a} python3-all{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} racon{a} readline-common{a} samtools{a} scala-library{a} sensible-utils{a} shared-mime-info{a} systemd{a} systemd-sysv{a} tzdata{a} unzip{a} x11-common{a} xkb-data{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf at-spi2-core chrony curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libatk-wrapper-java-jni libgdk-pixbuf2.0-bin libglib2.0-data libgpm2 libgtk-3-bin libkmod2 libldap-common libltdl-dev libmail-sendmail-perl libnss-systemd librsvg2-common libsasl2-modules libxt-dev linux-sysctl-defaults lynx mesa-vulkan-drivers minimap ntpsec openntpd psmisc publicsuffix python3-gffutils python3-matplotlib rampler systemd-cryptsetup systemd-timesyncd wget xdg-user-dirs 0 packages upgraded, 274 newly installed, 0 to remove and 0 not upgraded. Need to get 284 MB of archives. After unpacking 952 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1317201 and its subdirectories unicycler failed to build from source. Sat Feb 22 00:18:07 UTC 2025 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 75.4% -- replaced with stdout Sat Feb 22 00:18:07 UTC 2025 W: Downloading the build dependencies failed Sat Feb 22 00:18:07 UTC 2025 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Sat Feb 22 00:18:07 UTC 2025 W: Network problems are automatically rescheduled after some hours. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-02-22 00:18:08] INFO: Starting at 2025-02-22 00:18:08.268654 [2025-02-22 00:18:08] INFO: Generating the pages of 1 package(s) [2025-02-22 00:18:09] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/unicycler_0.5.1+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/unicycler_0.5.1+dfsg-3.diff.gz is missing [2025-02-22 00:18:09] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/unicycler_0.5.1+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/unicycler_0.5.1+dfsg-3.diff.gz is missing [2025-02-22 00:18:09] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/unicycler_0.5.1+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/unicycler_0.5.1+dfsg-3.diff.gz is missing [2025-02-22 00:18:09] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/arm64/unicycler didn't produce a buildlog, even though it has been built. [2025-02-22 00:18:09] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/arm64/unicycler_0.5.0+dfsg-1.diff.gz is missing [2025-02-22 00:18:09] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/unicycler_0.5.0+dfsg-1.diff.gz is missing [2025-02-22 00:18:09] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/unicycler_0.5.0+dfsg-1.diff.gz is missing [2025-02-22 00:18:09] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/unicycler_0.4.8+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/unicycler_0.4.8+dfsg-2.diff.gz is missing [2025-02-22 00:18:09] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/unicycler_0.4.8+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/unicycler_0.4.8+dfsg-2.diff.gz is missing [2025-02-22 00:18:09] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/unicycler_0.4.8+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/unicycler_0.4.8+dfsg-2.diff.gz is missing [2025-02-22 00:18:09] INFO: Finished at 2025-02-22 00:18:09.630944, took: 0:00:01.362295 Sat Feb 22 00:18:09 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/arm64/unicycler.html Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/unicycler_0.5.1+dfsg-3.rbuild.log: 71.1% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/unicycler_0.5.1+dfsg-3.rbuild.log.gz [2025-02-22 00:18:09] INFO: Starting at 2025-02-22 00:18:09.996669 [2025-02-22 00:18:10] INFO: Generating the pages of 1 package(s) [2025-02-22 00:18:11] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/unicycler_0.5.1+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/unicycler_0.5.1+dfsg-3.diff.gz is missing [2025-02-22 00:18:11] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/unicycler_0.5.1+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/unicycler_0.5.1+dfsg-3.diff.gz is missing [2025-02-22 00:18:11] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/unicycler_0.5.1+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/unicycler_0.5.1+dfsg-3.diff.gz is missing [2025-02-22 00:18:11] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/unicycler_0.5.1+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/unicycler_0.5.1+dfsg-3.diff.gz is missing [2025-02-22 00:18:11] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/arm64/unicycler_0.5.0+dfsg-1.diff.gz is missing [2025-02-22 00:18:11] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/unicycler_0.5.0+dfsg-1.diff.gz is missing [2025-02-22 00:18:11] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/unicycler_0.5.0+dfsg-1.diff.gz is missing [2025-02-22 00:18:11] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/unicycler_0.4.8+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/unicycler_0.4.8+dfsg-2.diff.gz is missing [2025-02-22 00:18:11] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/unicycler_0.4.8+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/unicycler_0.4.8+dfsg-2.diff.gz is missing [2025-02-22 00:18:11] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/unicycler_0.4.8+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/unicycler_0.4.8+dfsg-2.diff.gz is missing [2025-02-22 00:18:11] INFO: Finished at 2025-02-22 00:18:11.300934, took: 0:00:01.304269 All cleanup done. Sat Feb 22 00:18:11 UTC 2025 - total duration: 0h 0m 51s. Sat Feb 22 00:18:11 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-hKLIvnm4, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 54.624s CPU time consumed: 6.639s