Running as unit: rb-build-arm64_6-80242.service ==================================================================================== Sat Feb 22 07:52:27 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_6) on jenkins, called using "codethink03-arm64 codethink04-arm64" as arguments. Sat Feb 22 07:52:27 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-0Z7Z4EPl" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Feb 22 07:52:27 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Sat Feb 22 07:52:27 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-BQD2Iy' Sat Feb 22 07:52:28 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Sat Feb 22 07:52:28 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-pcJYHH' ok, let's check if schroedinger-coordgenlibs is building anywhere yet… ok, schroedinger-coordgenlibs is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of schroedinger-coordgenlibs in trixie on arm64 on jenkins now. 1st build will be done on codethink03-arm64.debian.net. 2nd build will be done on codethink04-arm64.debian.net. ============================================================================= Sat Feb 22 07:52:31 UTC 2025 I: starting to build schroedinger-coordgenlibs/trixie/arm64 on jenkins on '2025-02-22 07:52' Sat Feb 22 07:52:31 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_6/80242/console.log 1740210751 arm64 trixie schroedinger-coordgenlibs Sat Feb 22 07:52:31 UTC 2025 I: Downloading source for trixie/schroedinger-coordgenlibs=3.0.2-1 --2025-02-22 07:52:32-- http://deb.debian.org/debian/pool/main/s/schroedinger-coordgenlibs/schroedinger-coordgenlibs_3.0.2-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2301 (2.2K) [text/prs.lines.tag] Saving to: ‘schroedinger-coordgenlibs_3.0.2-1.dsc’ 0K .. 100% 311M=0s 2025-02-22 07:52:32 (311 MB/s) - ‘schroedinger-coordgenlibs_3.0.2-1.dsc’ saved [2301/2301] --2025-02-22 07:52:32-- http://deb.debian.org/debian/pool/main/s/schroedinger-coordgenlibs/schroedinger-coordgenlibs_3.0.2-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2301 (2.2K) [text/prs.lines.tag] Saving to: ‘schroedinger-coordgenlibs_3.0.2-1.dsc’ 0K .. 100% 311M=0s 2025-02-22 07:52:32 (311 MB/s) - ‘schroedinger-coordgenlibs_3.0.2-1.dsc’ saved [2301/2301] Sat Feb 22 07:52:32 UTC 2025 I: schroedinger-coordgenlibs_3.0.2-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: schroedinger-coordgenlibs Binary: libcoordgen-dev, libcoordgen3 Architecture: any Version: 3.0.2-1 Maintainer: Debian Science Team Uploaders: Steffen Moeller , Homepage: https://github.com/schrodinger/coordgenlibs Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/science-team/schroedinger-coordgenlibs Vcs-Git: https://salsa.debian.org/science-team/schroedinger-coordgenlibs.git Build-Depends: cmake, debhelper-compat (= 13), libboost-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-test-dev, libmaeparser-dev, zlib1g-dev Package-List: libcoordgen-dev deb libdevel optional arch=any libcoordgen3 deb libs optional arch=any Checksums-Sha1: da681ab56f1dace088d90a538a27eb649e44f286 166817 schroedinger-coordgenlibs_3.0.2.orig.tar.gz 8286bde77a5ae22f5bbb2c89161ebd785db5f9fb 3392 schroedinger-coordgenlibs_3.0.2-1.debian.tar.xz Checksums-Sha256: f67697434f7fec03bca150a6d84ea0e8409f6ec49d5aab43badc5833098ff4e3 166817 schroedinger-coordgenlibs_3.0.2.orig.tar.gz 5c62eb9396efab61828a5b63604381afca68f12e4258ca0471aea77c413414c2 3392 schroedinger-coordgenlibs_3.0.2-1.debian.tar.xz Files: bc9dabbbb2b99ae426f3a1bf16c4d3cc 166817 schroedinger-coordgenlibs_3.0.2.orig.tar.gz ef83165b83fc09850be9001bf5a8d6ed 3392 schroedinger-coordgenlibs_3.0.2-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmSJUT8SHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHfxgP/ikGTyMUngBH1IqZ5lfrEBX2LO/LeM/Z D+eQrkUkwA7r/Urmh4sojC1+YKBGbQpc1OurelXN3AxNOROTGVGrz7wQQWnWvweW P7EBrRe0oTpUqLIa327PhMX+Xt9i7hnhlm2e8NeJm5bXqqWK25z/A2C/sUxF1ee4 yku105XmzIbeh/w4IUV9PL+10d7hO9REyveSsqp0bAdtPwLGrpkAalUnsT0rBb/l bzs/Z3zQyfxWpr70ip5HXTNG1QAmPHQU6I/0qRlhQ+/nICTphBq3zFGDer+YvAsH wzKNgm37w1zNr+Ya/txR+CoeZsG5Wz0uD8L6PY66N/SYBvnA5ZBQ+ZxyP5/WbOWf 5XWEJ+EX9n3CoTR8XtAzfC0zklDxivuvBm246OiaCaJbvUao51ZOK9vht2jYZedg NDvaYP95hrb4dGWPpdC2x9gzp1aSjOA4TVCSycLTBw+grGxwYRz7wNd3ELW4SQCl M+LetAKzjTa5F0s4m0g79/DZvvZstlZczPfUPqQeXDPLHgWa96oVoyAaNYOb2n3d BZKC7DY3aUogKiYA5Ve/ZIxYMhpj7aafAzHnuJPXL4EpxBW2YC/UKgyCoKJZugP5 TJuDPCykgtGQHAeeo1zgXsizL0eP+8b6xWRBfU+3sm5ocF29D3AFb4CjGBGHblCe /0T0Rhbbx/+H =dRz7 -----END PGP SIGNATURE----- Sat Feb 22 07:52:32 UTC 2025 I: Checking whether the package is not for us Sat Feb 22 07:52:32 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Sat Feb 22 07:52:32 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Sat Feb 22 07:52:32 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Sat Feb 22 07:52:32 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-6eRhYU' ==================================================================================== Fri Mar 27 14:15:33 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "1 schroedinger-coordgenlibs trixie /srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a 3.0.2-1" as arguments. Fri Mar 27 14:15:33 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-wbqb5crO" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Mar 27 14:15:33 UTC 2026 I: Downloading source for trixie/schroedinger-coordgenlibs=3.0.2-1 Reading package lists... NOTICE: 'schroedinger-coordgenlibs' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/schroedinger-coordgenlibs.git Please use: git clone https://salsa.debian.org/science-team/schroedinger-coordgenlibs.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 173 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main schroedinger-coordgenlibs 3.0.2-1 (dsc) [2301 B] Get:2 http://deb.debian.org/debian trixie/main schroedinger-coordgenlibs 3.0.2-1 (tar) [167 kB] Get:3 http://deb.debian.org/debian trixie/main schroedinger-coordgenlibs 3.0.2-1 (diff) [3392 B] Fetched 173 kB in 0s (4130 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'schroedinger-coordgenlibs' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/schroedinger-coordgenlibs.git Please use: git clone https://salsa.debian.org/science-team/schroedinger-coordgenlibs.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 173 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main schroedinger-coordgenlibs 3.0.2-1 (dsc) [2301 B] Get:2 http://deb.debian.org/debian trixie/main schroedinger-coordgenlibs 3.0.2-1 (tar) [167 kB] Get:3 http://deb.debian.org/debian trixie/main schroedinger-coordgenlibs 3.0.2-1 (diff) [3392 B] Fetched 173 kB in 0s (4130 kB/s) Download complete and in download only mode ============================================================================= Building schroedinger-coordgenlibs in trixie on arm64 on codethink03-arm64 now. Date: Fri Mar 27 14:15:34 GMT 2026 Date UTC: Fri Mar 27 14:15:34 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Mar 27 02:15:34 -12 2026 I: pbuilder-time-stamp: 1774620934 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [schroedinger-coordgenlibs_3.0.2-1.dsc] I: copying [./schroedinger-coordgenlibs_3.0.2.orig.tar.gz] I: copying [./schroedinger-coordgenlibs_3.0.2-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./schroedinger-coordgenlibs_3.0.2-1.dsc: unsupported subcommand dpkg-source: info: extracting schroedinger-coordgenlibs in schroedinger-coordgenlibs-3.0.2 dpkg-source: info: unpacking schroedinger-coordgenlibs_3.0.2.orig.tar.gz dpkg-source: info: unpacking schroedinger-coordgenlibs_3.0.2-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1540590/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='97f82d41d898427885d70087572353c1' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1540590' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a/pbuilderrc_nFwH --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a/b1 --logfile b1/build.log schroedinger-coordgenlibs_3.0.2-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1540590/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cmake, debhelper-compat (= 13), libboost-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-test-dev, libmaeparser-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19972 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-test-dev; however: Package libboost-test-dev is not installed. pbuilder-satisfydepends-dummy depends on libmaeparser-dev; however: Package libmaeparser-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-test-dev{a} libboost-test1.83-dev{a} libboost-test1.83.0{a} libboost1.83-dev{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu-dev{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmaeparser-dev{a} libmaeparser1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 81 newly installed, 0 to remove and 0 not upgraded. Need to get 63.4 MB of archives. After unpacking 393 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libproc2-0 arm64 2:4.0.4-7 [62.4 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 procps arm64 2:4.0.4-7 [868 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-3 [92.0 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-3 [862 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 cmake-data all 3.31.5-2 [2267 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 27 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.12.1-2 [340 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libuv1t64 arm64 1.50.0-2 [148 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 cmake arm64 3.31.5-2 [9907 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-3 [539 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 55 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.1 [920 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 icu-devtools arm64 72.1-6 [196 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libboost1.83-dev arm64 1.83.0-4.1 [10.6 MB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libboost-atomic1.83.0 arm64 1.83.0-4.1 [233 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libboost-atomic1.83-dev arm64 1.83.0-4.1 [234 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Get: 66 http://deb.debian.org/debian trixie/main arm64 libboost-filesystem1.83.0 arm64 1.83.0-4.1 [273 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libboost-system1.83.0 arm64 1.83.0-4.1 [231 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libboost-system1.83-dev arm64 1.83.0-4.1 [232 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libboost-filesystem1.83-dev arm64 1.83.0-4.1 [292 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libboost-filesystem-dev arm64 1.83.0.2+b2 [3616 B] Get: 71 http://deb.debian.org/debian trixie/main arm64 libboost-regex1.83.0 arm64 1.83.0-4.1 [314 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libicu-dev arm64 72.1-6 [10.3 MB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libboost-regex1.83-dev arm64 1.83.0-4.1 [335 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libboost-iostreams1.83-dev arm64 1.83.0-4.1 [261 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libboost-iostreams-dev arm64 1.83.0.2+b2 [3568 B] Get: 76 http://deb.debian.org/debian trixie/main arm64 libboost-test1.83.0 arm64 1.83.0-4.1 [438 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libboost-test1.83-dev arm64 1.83.0-4.1 [528 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libboost-test-dev arm64 1.83.0.2+b2 [3620 B] Get: 79 http://deb.debian.org/debian trixie/main arm64 libmaeparser1 arm64 1.3.1-1+b2 [84.6 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libmaeparser-dev arm64 1.3.1-1+b2 [13.6 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 63.4 MB in 0s (159 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19972 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-7_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-7_arm64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. 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Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../schroedinger-coordgenlibs_3.0.2-1_source.changes dpkg-buildpackage: info: source package schroedinger-coordgenlibs dpkg-buildpackage: info: source version 3.0.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- maeparser include dir set as '/usr/include' -- maeparser libraries set as '/usr/lib/aarch64-linux-gnu/libmaeparser.so' -- Found compiled maeparser library at CMake Warning (dev) at CMakeLists.txt:78 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") CMake Warning (dev) at example_dir/CMakeLists.txt:13 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: filesystem CMake Warning (dev) at test/CMakeLists.txt:14 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: filesystem unit_test_framework -- Configuring done (1.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu dh_auto_build cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/schroedinger-coordgenlibs-3.0.2 -B/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start 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CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerAtom.cpp /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerBond.cpp [ 42%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o [ 47%] Building CXX object 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerResidueInteraction.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerResidueInteraction.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerResidueInteraction.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerResidueInteraction.cpp [ 66%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerRing.cpp [ 71%] Linking CXX shared library libcoordgen.so /usr/bin/cmake -E cmake_link_script CMakeFiles/coordgen.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--dependency-file=CMakeFiles/coordgen.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libcoordgen.so.3 -o libcoordgen.so.3.0.2 CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o CMakeFiles/coordgen.dir/CoordgenTemplates.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerResidueInteraction.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o /usr/bin/cmake -E cmake_symlink_library libcoordgen.so.3.0.2 libcoordgen.so.3 libcoordgen.so make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' [ 71%] Built target coordgen make -f example_dir/CMakeFiles/example.dir/build.make example_dir/CMakeFiles/example.dir/depend make -f test/CMakeFiles/test_coordgen.dir/build.make test/CMakeFiles/test_coordgen.dir/depend make -f test/CMakeFiles/test_smilesparser.dir/build.make test/CMakeFiles/test_smilesparser.dir/depend make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/schroedinger-coordgenlibs-3.0.2 /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/example_dir /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/example_dir /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/example_dir/CMakeFiles/example.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/schroedinger-coordgenlibs-3.0.2 /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/test /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test/CMakeFiles/test_coordgen.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/schroedinger-coordgenlibs-3.0.2 /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/test /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test/CMakeFiles/test_smilesparser.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' make -f test/CMakeFiles/test_coordgen.dir/build.make test/CMakeFiles/test_coordgen.dir/build make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' make -f test/CMakeFiles/test_smilesparser.dir/build.make test/CMakeFiles/test_smilesparser.dir/build make -f example_dir/CMakeFiles/example.dir/build.make example_dir/CMakeFiles/example.dir/build make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' [ 80%] Building CXX object example_dir/CMakeFiles/example.dir/example.cpp.o [ 80%] Building CXX object test/CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o [ 85%] Building CXX object test/CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/example_dir && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Werror -MD -MT example_dir/CMakeFiles/example.dir/example.cpp.o -MF CMakeFiles/example.dir/example.cpp.o.d -o CMakeFiles/example.dir/example.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/example_dir/example.cpp cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Werror -MD -MT test/CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o -MF CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o.d -o CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/test/test_smilesparser.cpp cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DSOURCE_DIR=\"/build/reproducible-path/schroedinger-coordgenlibs-3.0.2\" -DTEST_SAMPLES_PATH=\"/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/test\" -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Werror -MD -MT test/CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o -MF CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o.d -o CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/test/test_coordgen.cpp [ 90%] Linking CXX executable example cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/example_dir && /usr/bin/cmake -E cmake_link_script CMakeFiles/example.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/example.dir/link.d CMakeFiles/example.dir/example.cpp.o -o example -Wl,-rpath,/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu ../libcoordgen.so.3.0.2 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' [ 90%] Built target example [ 95%] Linking CXX executable test_smilesparser cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_smilesparser.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_smilesparser.dir/link.d CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o -o test_smilesparser -Wl,-rpath,/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu ../libcoordgen.so.3.0.2 /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' [ 95%] Built target test_smilesparser [100%] Linking CXX executable test_coordgen cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_coordgen.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_coordgen.dir/link.d CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o -o test_coordgen -Wl,-rpath,/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu ../libcoordgen.so.3.0.2 -lmaeparser /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' [100%] Built target test_coordgen make[2]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' dh_auto_test cd obj-aarch64-linux-gnu && make -j12 test ARGS\+=--verbose ARGS\+=-j12 make[1]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j12 UpdateCTestConfiguration from :/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/DartConfiguration.tcl Parse Config file:/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/DartConfiguration.tcl Parse Config file:/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end Connected to MAKE jobserver test 1 Start 1: example 1: Test command: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/example_dir/example 1: Working Directory: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test 1: Test timeout computed to be: 1500 test 2 Start 2: test_coordgen 2: Test command: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test/test_coordgen 2: Working Directory: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test 2: Test timeout computed to be: 1500 test 3 Start 3: test_smilesparser 3: Test command: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test/test_coordgen 3: Working Directory: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test 3: Test timeout computed to be: 1500 1: (-50, 0) (0, 0) 1/3 Test #1: example .......................... Passed 0.01 sec 3: Running 16 test cases... 3: 3: *** No errors detected 3:  2/3 Test #3: test_smilesparser ................ Passed 1.04 sec 2: Running 16 test cases... 2: 2: *** No errors detected 2:  3/3 Test #2: test_coordgen .................... Passed 1.09 sec 100% tests passed, 0 tests failed out of 3 Total Test time (real) = 1.09 sec make[1]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs dh_auto_install cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/schroedinger-coordgenlibs-3.0.2 -B/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/lib/aarch64-linux-gnu/libcoordgen.so.3.0.2 -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/lib/aarch64-linux-gnu/libcoordgen.so.3 -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/lib/aarch64-linux-gnu/libcoordgen.so -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/CoordgenConfig.hpp -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/CoordgenFragmentBuilder.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/CoordgenFragmenter.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/CoordgenMacrocycleBuilder.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/CoordgenMinimizer.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerAtom.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerBendInteraction.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerBond.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerClashInteraction.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerEZConstrainInteraction.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerFragment.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizer.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerInteraction.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerMarchingSquares.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerMaths.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerMolecule.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerResidue.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerResidueInteraction.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerRing.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerStretchInteraction.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/coordgen-config.cmake -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/coordgen-config-none.cmake make[1]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libcoordgen3' in '../libcoordgen3_3.0.2-1_arm64.deb'. dpkg-deb: building package 'libcoordgen3-dbgsym' in '../libcoordgen3-dbgsym_3.0.2-1_arm64.deb'. dpkg-deb: building package 'libcoordgen-dev' in '../libcoordgen-dev_3.0.2-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../schroedinger-coordgenlibs_3.0.2-1_arm64.buildinfo dpkg-genchanges --build=binary -O../schroedinger-coordgenlibs_3.0.2-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1540590 and its subdirectories I: Current time: Fri Mar 27 02:16:27 -12 2026 I: pbuilder-time-stamp: 1774620987 Fri Mar 27 14:16:27 UTC 2026 I: Signing ./b1/schroedinger-coordgenlibs_3.0.2-1_arm64.buildinfo as schroedinger-coordgenlibs_3.0.2-1_arm64.buildinfo.asc Fri Mar 27 14:16:27 UTC 2026 I: Signed ./b1/schroedinger-coordgenlibs_3.0.2-1_arm64.buildinfo as ./b1/schroedinger-coordgenlibs_3.0.2-1_arm64.buildinfo.asc Fri Mar 27 14:16:27 UTC 2026 - build #1 for schroedinger-coordgenlibs/trixie/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Fri Mar 27 14:16:27 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-wbqb5crO, removing. /srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 07:53 b1 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 07:52 b2 -rw------- 1 jenkins jenkins 3532 Feb 22 07:52 rbuildlog.75n4wX9 -rw-r--r-- 1 jenkins jenkins 2301 Jun 14 2023 schroedinger-coordgenlibs_3.0.2-1.dsc /srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a/b1: total 3840 -rw-r--r-- 1 jenkins jenkins 68996 Feb 22 07:53 build.log -rw-r--r-- 1 jenkins jenkins 46604 Feb 22 07:53 libcoordgen-dev_3.0.2-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 3403972 Feb 22 07:53 libcoordgen3-dbgsym_3.0.2-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 203852 Feb 22 07:53 libcoordgen3_3.0.2-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 3392 Feb 22 07:53 schroedinger-coordgenlibs_3.0.2-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2301 Feb 22 07:53 schroedinger-coordgenlibs_3.0.2-1.dsc -rw-r--r-- 1 jenkins jenkins 7027 Feb 22 07:53 schroedinger-coordgenlibs_3.0.2-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 7909 Feb 22 07:53 schroedinger-coordgenlibs_3.0.2-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1955 Feb 22 07:53 schroedinger-coordgenlibs_3.0.2-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 1804 Feb 22 07:53 schroedinger-coordgenlibs_3.0.2-1_source.changes -rw-r--r-- 1 jenkins jenkins 166817 Feb 22 07:53 schroedinger-coordgenlibs_3.0.2.orig.tar.gz /srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a/b2: total 0 Sat Feb 22 07:53:28 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Mar 27 02:15:34 -12 2026 I: pbuilder-time-stamp: 1774620934 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [schroedinger-coordgenlibs_3.0.2-1.dsc] I: copying [./schroedinger-coordgenlibs_3.0.2.orig.tar.gz] I: copying [./schroedinger-coordgenlibs_3.0.2-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./schroedinger-coordgenlibs_3.0.2-1.dsc: unsupported subcommand dpkg-source: info: extracting schroedinger-coordgenlibs in schroedinger-coordgenlibs-3.0.2 dpkg-source: info: unpacking schroedinger-coordgenlibs_3.0.2.orig.tar.gz dpkg-source: info: unpacking schroedinger-coordgenlibs_3.0.2-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1540590/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='97f82d41d898427885d70087572353c1' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1540590' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a/pbuilderrc_nFwH --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a/b1 --logfile b1/build.log schroedinger-coordgenlibs_3.0.2-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1540590/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cmake, debhelper-compat (= 13), libboost-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-test-dev, libmaeparser-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19972 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-test-dev; however: Package libboost-test-dev is not installed. pbuilder-satisfydepends-dummy depends on libmaeparser-dev; however: Package libmaeparser-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-test-dev{a} libboost-test1.83-dev{a} libboost-test1.83.0{a} libboost1.83-dev{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu-dev{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmaeparser-dev{a} libmaeparser1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 81 newly installed, 0 to remove and 0 not upgraded. Need to get 63.4 MB of archives. After unpacking 393 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libproc2-0 arm64 2:4.0.4-7 [62.4 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 procps arm64 2:4.0.4-7 [868 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-3 [92.0 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-3 [862 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 cmake-data all 3.31.5-2 [2267 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 27 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.12.1-2 [340 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libuv1t64 arm64 1.50.0-2 [148 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 cmake arm64 3.31.5-2 [9907 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-3 [539 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 55 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.1 [920 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 icu-devtools arm64 72.1-6 [196 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libboost1.83-dev arm64 1.83.0-4.1 [10.6 MB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libboost-atomic1.83.0 arm64 1.83.0-4.1 [233 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libboost-atomic1.83-dev arm64 1.83.0-4.1 [234 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Get: 66 http://deb.debian.org/debian trixie/main arm64 libboost-filesystem1.83.0 arm64 1.83.0-4.1 [273 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libboost-system1.83.0 arm64 1.83.0-4.1 [231 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libboost-system1.83-dev arm64 1.83.0-4.1 [232 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libboost-filesystem1.83-dev arm64 1.83.0-4.1 [292 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libboost-filesystem-dev arm64 1.83.0.2+b2 [3616 B] Get: 71 http://deb.debian.org/debian trixie/main arm64 libboost-regex1.83.0 arm64 1.83.0-4.1 [314 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libicu-dev arm64 72.1-6 [10.3 MB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libboost-regex1.83-dev arm64 1.83.0-4.1 [335 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libboost-iostreams1.83-dev arm64 1.83.0-4.1 [261 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libboost-iostreams-dev arm64 1.83.0.2+b2 [3568 B] Get: 76 http://deb.debian.org/debian trixie/main arm64 libboost-test1.83.0 arm64 1.83.0-4.1 [438 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libboost-test1.83-dev arm64 1.83.0-4.1 [528 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libboost-test-dev arm64 1.83.0.2+b2 [3620 B] Get: 79 http://deb.debian.org/debian trixie/main arm64 libmaeparser1 arm64 1.3.1-1+b2 [84.6 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libmaeparser-dev arm64 1.3.1-1+b2 [13.6 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 63.4 MB in 0s (159 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19972 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-7_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-7_arm64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. 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Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../schroedinger-coordgenlibs_3.0.2-1_source.changes dpkg-buildpackage: info: source package schroedinger-coordgenlibs dpkg-buildpackage: info: source version 3.0.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- maeparser include dir set as '/usr/include' -- maeparser libraries set as '/usr/lib/aarch64-linux-gnu/libmaeparser.so' -- Found compiled maeparser library at CMake Warning (dev) at CMakeLists.txt:78 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") CMake Warning (dev) at example_dir/CMakeLists.txt:13 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: filesystem CMake Warning (dev) at test/CMakeLists.txt:14 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: filesystem unit_test_framework -- Configuring done (1.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu dh_auto_build cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/schroedinger-coordgenlibs-3.0.2 -B/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' make -f CMakeFiles/coordgen.dir/build.make CMakeFiles/coordgen.dir/depend make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/schroedinger-coordgenlibs-3.0.2 /build/reproducible-path/schroedinger-coordgenlibs-3.0.2 /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu 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CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/CoordgenFragmentBuilder.cpp /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/CoordgenFragmenter.cpp /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/CoordgenMacrocycleBuilder.cpp /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. 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CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerAtom.cpp /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerBond.cpp [ 42%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o [ 47%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerFragment.cpp [ 52%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerMarchingSquares.cpp /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerMolecule.cpp [ 57%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerResidue.cpp [ 61%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerResidueInteraction.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerResidueInteraction.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerResidueInteraction.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerResidueInteraction.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerResidueInteraction.cpp [ 66%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerRing.cpp [ 71%] Linking CXX shared library libcoordgen.so /usr/bin/cmake -E cmake_link_script CMakeFiles/coordgen.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--dependency-file=CMakeFiles/coordgen.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libcoordgen.so.3 -o libcoordgen.so.3.0.2 CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o CMakeFiles/coordgen.dir/CoordgenTemplates.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerResidueInteraction.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o /usr/bin/cmake -E cmake_symlink_library libcoordgen.so.3.0.2 libcoordgen.so.3 libcoordgen.so make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' [ 71%] Built target coordgen make -f example_dir/CMakeFiles/example.dir/build.make example_dir/CMakeFiles/example.dir/depend make -f test/CMakeFiles/test_coordgen.dir/build.make test/CMakeFiles/test_coordgen.dir/depend make -f test/CMakeFiles/test_smilesparser.dir/build.make test/CMakeFiles/test_smilesparser.dir/depend make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/schroedinger-coordgenlibs-3.0.2 /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/example_dir /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/example_dir /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/example_dir/CMakeFiles/example.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/schroedinger-coordgenlibs-3.0.2 /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/test /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test/CMakeFiles/test_coordgen.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/schroedinger-coordgenlibs-3.0.2 /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/test /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test 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directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' [ 80%] Building CXX object example_dir/CMakeFiles/example.dir/example.cpp.o [ 80%] Building CXX object test/CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o [ 85%] Building CXX object test/CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/example_dir && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Werror -MD -MT example_dir/CMakeFiles/example.dir/example.cpp.o -MF CMakeFiles/example.dir/example.cpp.o.d -o CMakeFiles/example.dir/example.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/example_dir/example.cpp cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Werror -MD -MT test/CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o -MF CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o.d -o CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/test/test_smilesparser.cpp cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DSOURCE_DIR=\"/build/reproducible-path/schroedinger-coordgenlibs-3.0.2\" -DTEST_SAMPLES_PATH=\"/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/test\" -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Werror -MD -MT test/CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o -MF CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o.d -o CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/test/test_coordgen.cpp [ 90%] Linking CXX executable example cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/example_dir && /usr/bin/cmake -E cmake_link_script CMakeFiles/example.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/example.dir/link.d CMakeFiles/example.dir/example.cpp.o -o example -Wl,-rpath,/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu ../libcoordgen.so.3.0.2 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' [ 90%] Built target example [ 95%] Linking CXX executable test_smilesparser cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_smilesparser.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_smilesparser.dir/link.d CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o -o test_smilesparser -Wl,-rpath,/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu ../libcoordgen.so.3.0.2 /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' [ 95%] Built target test_smilesparser [100%] Linking CXX executable test_coordgen cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_coordgen.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_coordgen.dir/link.d CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o -o test_coordgen -Wl,-rpath,/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu ../libcoordgen.so.3.0.2 -lmaeparser /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' [100%] Built target test_coordgen make[2]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' dh_auto_test cd obj-aarch64-linux-gnu && make -j12 test ARGS\+=--verbose ARGS\+=-j12 make[1]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j12 UpdateCTestConfiguration from :/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/DartConfiguration.tcl Parse Config file:/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/DartConfiguration.tcl Parse Config file:/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end Connected to MAKE jobserver test 1 Start 1: example 1: Test command: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/example_dir/example 1: Working Directory: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test 1: Test timeout computed to be: 1500 test 2 Start 2: test_coordgen 2: Test command: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test/test_coordgen 2: Working Directory: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test 2: Test timeout computed to be: 1500 test 3 Start 3: test_smilesparser 3: Test command: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test/test_coordgen 3: Working Directory: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test 3: Test timeout computed to be: 1500 1: (-50, 0) (0, 0) 1/3 Test #1: example .......................... Passed 0.01 sec 3: Running 16 test cases... 3: 3: *** No errors detected 3:  2/3 Test #3: test_smilesparser ................ Passed 1.04 sec 2: Running 16 test cases... 2: 2: *** No errors detected 2:  3/3 Test #2: test_coordgen .................... Passed 1.09 sec 100% tests passed, 0 tests failed out of 3 Total Test time (real) = 1.09 sec make[1]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs dh_auto_install cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/schroedinger-coordgenlibs-3.0.2 -B/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/lib/aarch64-linux-gnu/libcoordgen.so.3.0.2 -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/lib/aarch64-linux-gnu/libcoordgen.so.3 -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/lib/aarch64-linux-gnu/libcoordgen.so -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/CoordgenConfig.hpp -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/CoordgenFragmentBuilder.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/CoordgenFragmenter.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/CoordgenMacrocycleBuilder.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/CoordgenMinimizer.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerAtom.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerBendInteraction.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerBond.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerClashInteraction.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerEZConstrainInteraction.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerFragment.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizer.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerInteraction.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerMarchingSquares.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerMaths.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerMolecule.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerResidue.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerResidueInteraction.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerRing.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerStretchInteraction.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/coordgen-config.cmake -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/coordgen-config-none.cmake make[1]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libcoordgen3' in '../libcoordgen3_3.0.2-1_arm64.deb'. dpkg-deb: building package 'libcoordgen3-dbgsym' in '../libcoordgen3-dbgsym_3.0.2-1_arm64.deb'. dpkg-deb: building package 'libcoordgen-dev' in '../libcoordgen-dev_3.0.2-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../schroedinger-coordgenlibs_3.0.2-1_arm64.buildinfo dpkg-genchanges --build=binary -O../schroedinger-coordgenlibs_3.0.2-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1540590 and its subdirectories I: Current time: Fri Mar 27 02:16:27 -12 2026 I: pbuilder-time-stamp: 1774620987 Sat Feb 22 07:53:29 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Sat Feb 22 07:53:29 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Sat Feb 22 07:53:29 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Sat Feb 22 07:53:29 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-wAmu4Z' ==================================================================================== Sat Feb 22 07:53:31 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "2 schroedinger-coordgenlibs trixie /srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a 3.0.2-1" as arguments. Sat Feb 22 07:53:31 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-hNDN8fZ6" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Feb 22 07:53:31 UTC 2025 I: Downloading source for trixie/schroedinger-coordgenlibs=3.0.2-1 Reading package lists... NOTICE: 'schroedinger-coordgenlibs' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/schroedinger-coordgenlibs.git Please use: git clone https://salsa.debian.org/science-team/schroedinger-coordgenlibs.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 173 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main schroedinger-coordgenlibs 3.0.2-1 (dsc) [2301 B] Get:2 http://deb.debian.org/debian trixie/main schroedinger-coordgenlibs 3.0.2-1 (tar) [167 kB] Get:3 http://deb.debian.org/debian trixie/main schroedinger-coordgenlibs 3.0.2-1 (diff) [3392 B] Fetched 173 kB in 0s (10.7 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'schroedinger-coordgenlibs' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/schroedinger-coordgenlibs.git Please use: git clone https://salsa.debian.org/science-team/schroedinger-coordgenlibs.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 173 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main schroedinger-coordgenlibs 3.0.2-1 (dsc) [2301 B] Get:2 http://deb.debian.org/debian trixie/main schroedinger-coordgenlibs 3.0.2-1 (tar) [167 kB] Get:3 http://deb.debian.org/debian trixie/main schroedinger-coordgenlibs 3.0.2-1 (diff) [3392 B] Fetched 173 kB in 0s (10.7 MB/s) Download complete and in download only mode ============================================================================= Re-Building schroedinger-coordgenlibs in trixie on arm64 on codethink04-arm64 now. Date: Sat Feb 22 07:53:31 GMT 2025 Date UTC: Sat Feb 22 07:53:31 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a/pbuilderrc_8zud + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' schroedinger-coordgenlibs = debian-installer -o schroedinger-coordgenlibs = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' schroedinger-coordgenlibs = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a/pbuilderrc_8zud --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a/b2 --logfile b2/build.log schroedinger-coordgenlibs_3.0.2-1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sat Feb 22 21:53:31 +14 2025 I: pbuilder-time-stamp: 1740210811 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [schroedinger-coordgenlibs_3.0.2-1.dsc] I: copying [./schroedinger-coordgenlibs_3.0.2.orig.tar.gz] I: copying [./schroedinger-coordgenlibs_3.0.2-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./schroedinger-coordgenlibs_3.0.2-1.dsc: unsupported subcommand dpkg-source: info: extracting schroedinger-coordgenlibs in schroedinger-coordgenlibs-3.0.2 dpkg-source: info: unpacking schroedinger-coordgenlibs_3.0.2.orig.tar.gz dpkg-source: info: unpacking schroedinger-coordgenlibs_3.0.2-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/874107/tmp/hooks/D01_modify_environment starting debug: Running on codethink04-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Feb 22 07:53 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/874107/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/874107/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=79568447c2354fec851ec672eed3d8f4 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=874107 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a/pbuilderrc_8zud --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a/b2 --logfile b2/build.log schroedinger-coordgenlibs_3.0.2-1.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/874107/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cmake, debhelper-compat (= 13), libboost-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-test-dev, libmaeparser-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19972 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-test-dev; however: Package libboost-test-dev is not installed. pbuilder-satisfydepends-dummy depends on libmaeparser-dev; however: Package libmaeparser-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-test-dev{a} libboost-test1.83-dev{a} libboost-test1.83.0{a} libboost1.83-dev{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu-dev{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmaeparser-dev{a} libmaeparser1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 81 newly installed, 0 to remove and 0 not upgraded. Need to get 63.4 MB of archives. After unpacking 393 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libproc2-0 arm64 2:4.0.4-7 [62.4 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 procps arm64 2:4.0.4-7 [868 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-3 [92.0 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-3 [862 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 cmake-data all 3.31.5-2 [2267 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 27 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.12.1-2 [340 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libuv1t64 arm64 1.50.0-2 [148 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 cmake arm64 3.31.5-2 [9907 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-3 [539 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 55 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.1 [920 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 icu-devtools arm64 72.1-6 [196 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libboost1.83-dev arm64 1.83.0-4.1 [10.6 MB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libboost-atomic1.83.0 arm64 1.83.0-4.1 [233 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libboost-atomic1.83-dev arm64 1.83.0-4.1 [234 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Get: 66 http://deb.debian.org/debian trixie/main arm64 libboost-filesystem1.83.0 arm64 1.83.0-4.1 [273 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libboost-system1.83.0 arm64 1.83.0-4.1 [231 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libboost-system1.83-dev arm64 1.83.0-4.1 [232 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libboost-filesystem1.83-dev arm64 1.83.0-4.1 [292 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libboost-filesystem-dev arm64 1.83.0.2+b2 [3616 B] Get: 71 http://deb.debian.org/debian trixie/main arm64 libboost-regex1.83.0 arm64 1.83.0-4.1 [314 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libicu-dev arm64 72.1-6 [10.3 MB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libboost-regex1.83-dev arm64 1.83.0-4.1 [335 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libboost-iostreams1.83-dev arm64 1.83.0-4.1 [261 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libboost-iostreams-dev arm64 1.83.0.2+b2 [3568 B] Get: 76 http://deb.debian.org/debian trixie/main arm64 libboost-test1.83.0 arm64 1.83.0-4.1 [438 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libboost-test1.83-dev arm64 1.83.0-4.1 [528 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libboost-test-dev arm64 1.83.0.2+b2 [3620 B] Get: 79 http://deb.debian.org/debian trixie/main arm64 libmaeparser1 arm64 1.3.1-1+b2 [84.6 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libmaeparser-dev arm64 1.3.1-1+b2 [13.6 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 63.4 MB in 0s (230 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19972 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-7_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-7_arm64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.4-3_arm64.deb ... Unpacking bsdextrautils (2.40.4-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../10-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-5_arm64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... 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Setting up libboost-system1.83-dev:arm64 (1.83.0-4.1) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libicu-dev:arm64 (72.1-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libldap2:arm64 (2.6.9+dfsg-1) ... Setting up libmaeparser-dev:arm64 (1.3.1-1+b2) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-3) ... Setting up libboost-test1.83-dev:arm64 (1.83.0-4.1) ... Setting up libidn2-0:arm64 (2.3.7-2+b1) ... Setting up libboost-filesystem1.83-dev:arm64 (1.83.0-4.1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libboost-test-dev:arm64 (1.83.0.2+b2) ... Setting up dh-autoreconf (20) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-4) ... Setting up libboost-regex1.83-dev:arm64 (1.83.0-4.1) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libarchive13t64:arm64 (3.7.4-1.1) ... Setting up libboost-filesystem-dev:arm64 (1.83.0.2+b2) ... Setting up libgnutls30t64:arm64 (3.8.9-2) ... Setting up libboost-iostreams1.83-dev:arm64 (1.83.0-4.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up libboost-iostreams-dev:arm64 (1.83.0.2+b2) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libcurl4t64:arm64 (8.12.1-2) ... Setting up debhelper (13.24.1) ... Setting up cmake (3.31.5-2) ... Processing triggers for libc-bin (2.40-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/874107/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/874107/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../schroedinger-coordgenlibs_3.0.2-1_source.changes dpkg-buildpackage: info: source package schroedinger-coordgenlibs dpkg-buildpackage: info: source version 3.0.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- maeparser include dir set as '/usr/include' -- maeparser libraries set as '/usr/lib/aarch64-linux-gnu/libmaeparser.so' -- Found compiled maeparser library at CMake Warning (dev) at CMakeLists.txt:78 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") CMake Warning (dev) at example_dir/CMakeLists.txt:13 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: filesystem CMake Warning (dev) at test/CMakeLists.txt:14 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: filesystem unit_test_framework -- Configuring done (1.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu dh_auto_build cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/schroedinger-coordgenlibs-3.0.2 -B/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' make -f CMakeFiles/coordgen.dir/build.make CMakeFiles/coordgen.dir/depend make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/schroedinger-coordgenlibs-3.0.2 /build/reproducible-path/schroedinger-coordgenlibs-3.0.2 /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu 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CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/CoordgenMacrocycleBuilder.cpp /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/CoordgenMinimizer.cpp /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong 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CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerBond.cpp /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerFragment.cpp /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard 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/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerResidue.cpp [ 57%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerMolecule.cpp [ 61%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerResidueInteraction.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 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-Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerRing.cpp [ 71%] Linking CXX shared library libcoordgen.so /usr/bin/cmake -E cmake_link_script CMakeFiles/coordgen.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--dependency-file=CMakeFiles/coordgen.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libcoordgen.so.3 -o libcoordgen.so.3.0.2 CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o CMakeFiles/coordgen.dir/CoordgenTemplates.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerResidueInteraction.cpp.o CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o /usr/bin/cmake -E cmake_symlink_library libcoordgen.so.3.0.2 libcoordgen.so.3 libcoordgen.so make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' [ 71%] Built target coordgen make -f example_dir/CMakeFiles/example.dir/build.make example_dir/CMakeFiles/example.dir/depend make -f test/CMakeFiles/test_coordgen.dir/build.make test/CMakeFiles/test_coordgen.dir/depend make -f test/CMakeFiles/test_smilesparser.dir/build.make test/CMakeFiles/test_smilesparser.dir/depend make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/schroedinger-coordgenlibs-3.0.2 /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/example_dir /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/example_dir /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/example_dir/CMakeFiles/example.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends 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directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' [ 76%] Building CXX object example_dir/CMakeFiles/example.dir/example.cpp.o [ 80%] Building CXX object test/CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o [ 85%] Building CXX object test/CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/example_dir && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Werror -MD -MT example_dir/CMakeFiles/example.dir/example.cpp.o -MF CMakeFiles/example.dir/example.cpp.o.d -o CMakeFiles/example.dir/example.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/example_dir/example.cpp cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Werror -MD -MT test/CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o -MF CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o.d -o CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/test/test_smilesparser.cpp cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DSOURCE_DIR=\"/build/reproducible-path/schroedinger-coordgenlibs-3.0.2\" -DTEST_SAMPLES_PATH=\"/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/test\" -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Werror -MD -MT test/CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o -MF CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o.d -o CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/test/test_coordgen.cpp [ 90%] Linking CXX executable example cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/example_dir && /usr/bin/cmake -E cmake_link_script CMakeFiles/example.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/example.dir/link.d CMakeFiles/example.dir/example.cpp.o -o example -Wl,-rpath,/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu ../libcoordgen.so.3.0.2 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' [ 90%] Built target example [ 95%] Linking CXX executable test_smilesparser cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_smilesparser.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_smilesparser.dir/link.d CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o -o test_smilesparser -Wl,-rpath,/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu ../libcoordgen.so.3.0.2 /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' [ 95%] Built target test_smilesparser [100%] Linking CXX executable test_coordgen cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_coordgen.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/test_coordgen.dir/link.d CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o -o test_coordgen -Wl,-rpath,/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu ../libcoordgen.so.3.0.2 -lmaeparser /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' [100%] Built target test_coordgen make[2]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' dh_auto_test cd obj-aarch64-linux-gnu && make -j12 test ARGS\+=--verbose ARGS\+=-j12 make[1]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j12 UpdateCTestConfiguration from :/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/DartConfiguration.tcl Parse Config file:/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/DartConfiguration.tcl Parse Config file:/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end Connected to MAKE jobserver test 1 Start 1: example 1: Test command: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/example_dir/example 1: Working Directory: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test 1: Test timeout computed to be: 1500 test 2 Start 2: test_coordgen 2: Test command: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test/test_coordgen 2: Working Directory: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test 2: Test timeout computed to be: 1500 test 3 Start 3: test_smilesparser 3: Test command: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test/test_coordgen 3: Working Directory: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test 3: Test timeout computed to be: 1500 1: (-50, 0) (0, 0) 1/3 Test #1: example .......................... Passed 0.01 sec 3: Running 16 test cases... 3: 3: *** No errors detected 3:  2/3 Test #3: test_smilesparser ................ Passed 1.03 sec 2: Running 16 test cases... 2: 2: *** No errors detected 2:  3/3 Test #2: test_coordgen .................... Passed 1.05 sec 100% tests passed, 0 tests failed out of 3 Total Test time (real) = 1.05 sec make[1]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs dh_auto_install cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/schroedinger-coordgenlibs-3.0.2 -B/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/lib/aarch64-linux-gnu/libcoordgen.so.3.0.2 -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/lib/aarch64-linux-gnu/libcoordgen.so.3 -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/lib/aarch64-linux-gnu/libcoordgen.so -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/CoordgenConfig.hpp -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/CoordgenFragmentBuilder.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/CoordgenFragmenter.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/CoordgenMacrocycleBuilder.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/CoordgenMinimizer.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerAtom.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerBendInteraction.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerBond.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerClashInteraction.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerEZConstrainInteraction.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerFragment.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizer.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerInteraction.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerMarchingSquares.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerMaths.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerMolecule.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerResidue.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerResidueInteraction.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerRing.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/include/coordgen/sketcherMinimizerStretchInteraction.h -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/coordgen-config.cmake -- Installing: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/coordgen-config-none.cmake make[1]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libcoordgen-dev' in '../libcoordgen-dev_3.0.2-1_arm64.deb'. dpkg-deb: building package 'libcoordgen3' in '../libcoordgen3_3.0.2-1_arm64.deb'. dpkg-deb: building package 'libcoordgen3-dbgsym' in '../libcoordgen3-dbgsym_3.0.2-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../schroedinger-coordgenlibs_3.0.2-1_arm64.buildinfo dpkg-genchanges --build=binary -O../schroedinger-coordgenlibs_3.0.2-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/874107/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/874107/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/874107 and its subdirectories I: Current time: Sat Feb 22 21:54:29 +14 2025 I: pbuilder-time-stamp: 1740210869 + false + set +x Sat Feb 22 07:54:29 UTC 2025 I: Signing ./b2/schroedinger-coordgenlibs_3.0.2-1_arm64.buildinfo as schroedinger-coordgenlibs_3.0.2-1_arm64.buildinfo.asc Sat Feb 22 07:54:30 UTC 2025 I: Signed ./b2/schroedinger-coordgenlibs_3.0.2-1_arm64.buildinfo as ./b2/schroedinger-coordgenlibs_3.0.2-1_arm64.buildinfo.asc Sat Feb 22 07:54:30 UTC 2025 - build #2 for schroedinger-coordgenlibs/trixie/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Sat Feb 22 07:54:30 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-hNDN8fZ6, removing. /srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a: total 88 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 07:53 b1 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 07:54 b2 -rw------- 1 jenkins jenkins 72829 Feb 22 07:53 rbuildlog.75n4wX9 -rw-r--r-- 1 jenkins jenkins 2301 Jun 14 2023 schroedinger-coordgenlibs_3.0.2-1.dsc /srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a/b1: total 3856 -rw-r--r-- 1 jenkins jenkins 68996 Feb 22 07:53 build.log -rw-r--r-- 1 jenkins jenkins 46604 Feb 22 07:53 libcoordgen-dev_3.0.2-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 3403972 Feb 22 07:53 libcoordgen3-dbgsym_3.0.2-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 203852 Feb 22 07:53 libcoordgen3_3.0.2-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 3392 Feb 22 07:53 schroedinger-coordgenlibs_3.0.2-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2301 Feb 22 07:53 schroedinger-coordgenlibs_3.0.2-1.dsc -rw-r--r-- 1 jenkins jenkins 7027 Feb 22 07:53 schroedinger-coordgenlibs_3.0.2-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 7909 Feb 22 07:53 schroedinger-coordgenlibs_3.0.2-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1955 Feb 22 07:53 schroedinger-coordgenlibs_3.0.2-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 1804 Feb 22 07:53 schroedinger-coordgenlibs_3.0.2-1_source.changes -rw-r--r-- 1 jenkins jenkins 166817 Feb 22 07:53 schroedinger-coordgenlibs_3.0.2.orig.tar.gz /srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a/b2: total 3844 -rw-r--r-- 1 jenkins jenkins 70929 Feb 22 07:54 build.log -rw-r--r-- 1 jenkins jenkins 46604 Feb 22 07:54 libcoordgen-dev_3.0.2-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 3403972 Feb 22 07:54 libcoordgen3-dbgsym_3.0.2-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 203852 Feb 22 07:54 libcoordgen3_3.0.2-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 3392 Feb 22 07:54 schroedinger-coordgenlibs_3.0.2-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2301 Feb 22 07:54 schroedinger-coordgenlibs_3.0.2-1.dsc -rw-r--r-- 1 jenkins jenkins 7027 Feb 22 07:54 schroedinger-coordgenlibs_3.0.2-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 7909 Feb 22 07:54 schroedinger-coordgenlibs_3.0.2-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1955 Feb 22 07:54 schroedinger-coordgenlibs_3.0.2-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 1804 Feb 22 07:54 schroedinger-coordgenlibs_3.0.2-1_source.changes -rw-r--r-- 1 jenkins jenkins 166817 Feb 22 07:54 schroedinger-coordgenlibs_3.0.2.orig.tar.gz Sat Feb 22 07:54:31 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Sat Feb 22 07:54:32 UTC 2025 I: schroedinger-coordgenlibs_3.0.2-1_arm64.changes: Format: 1.8 Date: Wed, 14 Jun 2023 01:28:06 -0400 Source: schroedinger-coordgenlibs Binary: libcoordgen-dev libcoordgen3 libcoordgen3-dbgsym Architecture: arm64 Version: 3.0.2-1 Distribution: unstable Urgency: medium Maintainer: Debian Science Team Changed-By: Andrius Merkys Description: libcoordgen-dev - 2D coordinate generation for chemical compounds - header files libcoordgen3 - 2D coordinate generation for chemical compounds Changes: schroedinger-coordgenlibs (3.0.2-1) unstable; urgency=medium . * Team upload. * New upstream version 3.0.2 * Update standards version to 4.6.2, no changes needed. * Add myself to debian/copyright. * Wrap and sort. Checksums-Sha1: 56409bc40e1dddc0025fdcbcb31fc731539ee77f 46604 libcoordgen-dev_3.0.2-1_arm64.deb a6bc3724c124c7bd1320ca819fffccc7cff6fedc 3403972 libcoordgen3-dbgsym_3.0.2-1_arm64.deb 9b824628ebb9a8cbbcea9fa91702f35e5fc13785 203852 libcoordgen3_3.0.2-1_arm64.deb 190cd5dcb03550523a228bbd0d1961f4ed4f8e2e 7027 schroedinger-coordgenlibs_3.0.2-1_arm64.buildinfo Checksums-Sha256: 9ce2fd7900fd3d21f2b956d82e68ea61a5ffefbec351c6dfcc1025c2c3bb2492 46604 libcoordgen-dev_3.0.2-1_arm64.deb 5e3a282fb5d7f862ca6c2fb97916befa264cf880b811304477bb2b1809b6ce3b 3403972 libcoordgen3-dbgsym_3.0.2-1_arm64.deb e75cdb2b78277af49cf1ff845d82a4e23075473275256ec4c860dbe08d107a99 203852 libcoordgen3_3.0.2-1_arm64.deb b24b98883f33f2917116e93235a5fa1baddb3bbcdc4137627c042397331db4fa 7027 schroedinger-coordgenlibs_3.0.2-1_arm64.buildinfo Files: 4224f6f0e9a0483a4444def0432b2b42 46604 libdevel optional libcoordgen-dev_3.0.2-1_arm64.deb 434dfcf3c4adefd425572a714f1b1c6c 3403972 debug optional libcoordgen3-dbgsym_3.0.2-1_arm64.deb fbc428e374ecf0d2bb57089773ef7bd7 203852 libs optional libcoordgen3_3.0.2-1_arm64.deb 4e9549772fe97337cb46e1c0180770df 7027 libs optional schroedinger-coordgenlibs_3.0.2-1_arm64.buildinfo removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/schroedinger-coordgenlibs_3.0.2-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/schroedinger-coordgenlibs_3.0.2-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/schroedinger-coordgenlibs_3.0.2-1.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/schroedinger-coordgenlibs_3.0.2-1.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/arm64/schroedinger-coordgenlibs_3.0.2-1_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/schroedinger-coordgenlibs_3.0.2-1.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-02-22 07:53:28.632826536 +0000 +++ b2/build.log 2025-02-22 07:54:30.926010842 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Mar 27 02:15:34 -12 2026 -I: pbuilder-time-stamp: 1774620934 +I: Current time: Sat Feb 22 21:53:31 +14 2025 +I: pbuilder-time-stamp: 1740210811 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -22,52 +22,84 @@ dpkg-source: info: unpacking schroedinger-coordgenlibs_3.0.2-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1540590/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/874107/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 22 07:53 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/874107/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/874107/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='97f82d41d898427885d70087572353c1' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1540590' - PS1='# ' - PS2='> ' + INVOCATION_ID=79568447c2354fec851ec672eed3d8f4 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=874107 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a/pbuilderrc_nFwH --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a/b1 --logfile b1/build.log schroedinger-coordgenlibs_3.0.2-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a/pbuilderrc_8zud --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a/b2 --logfile b2/build.log schroedinger-coordgenlibs_3.0.2-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1540590/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/874107/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -198,7 +230,7 @@ Get: 79 http://deb.debian.org/debian trixie/main arm64 libmaeparser1 arm64 1.3.1-1+b2 [84.6 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libmaeparser-dev arm64 1.3.1-1+b2 [13.6 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] -Fetched 63.4 MB in 0s (159 MB/s) +Fetched 63.4 MB in 0s (230 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19972 files and directories currently installed.) @@ -537,7 +569,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../schroedinger-coordgenlibs_3.0.2-1_source.changes +I: user script /srv/workspace/pbuilder/874107/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/874107/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../schroedinger-coordgenlibs_3.0.2-1_source.changes dpkg-buildpackage: info: source package schroedinger-coordgenlibs dpkg-buildpackage: info: source version 3.0.2-1 dpkg-buildpackage: info: source distribution unstable @@ -625,30 +661,30 @@ make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' make -f CMakeFiles/coordgen.dir/build.make CMakeFiles/coordgen.dir/build make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' -[ 9%] Building CXX object CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o -[ 9%] Building CXX object CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o +[ 14%] Building CXX object CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o +[ 14%] Building CXX object CMakeFiles/coordgen.dir/CoordgenTemplates.cpp.o [ 14%] Building CXX object CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o -[ 19%] Building CXX object CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o -[ 23%] Building CXX object CMakeFiles/coordgen.dir/CoordgenTemplates.cpp.o -[ 28%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o -[ 33%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o -[ 38%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o -/usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/CoordgenFragmentBuilder.cpp +[ 19%] Building CXX object CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o +[ 23%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o +[ 28%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/CoordgenFragmenter.cpp +[ 33%] Building CXX object CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/CoordgenMacrocycleBuilder.cpp /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/CoordgenMinimizer.cpp +/usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/CoordgenFragmentBuilder.cpp /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/CoordgenTemplates.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenTemplates.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenTemplates.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/CoordgenTemplates.cpp /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizer.cpp +[ 38%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o +[ 42%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o +[ 47%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerAtom.cpp /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerBond.cpp -[ 42%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o -[ 47%] Building CXX object 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-Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerMarchingSquares.cpp -/usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerMolecule.cpp -[ 57%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o +[ 52%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerResidue.cpp +[ 57%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o +/usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerMolecule.cpp [ 61%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerResidueInteraction.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerResidueInteraction.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerResidueInteraction.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerResidueInteraction.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerResidueInteraction.cpp [ 66%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerRing.cpp.o @@ -670,14 +706,14 @@ cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/schroedinger-coordgenlibs-3.0.2 /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/test /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test/CMakeFiles/test_smilesparser.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' -make -f test/CMakeFiles/test_coordgen.dir/build.make test/CMakeFiles/test_coordgen.dir/build +make -f example_dir/CMakeFiles/example.dir/build.make example_dir/CMakeFiles/example.dir/build make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' +make -f test/CMakeFiles/test_coordgen.dir/build.make test/CMakeFiles/test_coordgen.dir/build make -f test/CMakeFiles/test_smilesparser.dir/build.make test/CMakeFiles/test_smilesparser.dir/build -make -f example_dir/CMakeFiles/example.dir/build.make example_dir/CMakeFiles/example.dir/build make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' -[ 80%] Building CXX object example_dir/CMakeFiles/example.dir/example.cpp.o +[ 76%] Building CXX object example_dir/CMakeFiles/example.dir/example.cpp.o [ 80%] Building CXX object test/CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o [ 85%] Building CXX object test/CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/example_dir && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Werror -MD -MT example_dir/CMakeFiles/example.dir/example.cpp.o -MF CMakeFiles/example.dir/example.cpp.o.d -o CMakeFiles/example.dir/example.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/example_dir/example.cpp @@ -742,16 +778,16 @@ 3: 3: *** No errors detected 3:  -2/3 Test #3: test_smilesparser ................ Passed 1.04 sec +2/3 Test #3: test_smilesparser ................ Passed 1.03 sec 2: Running 16 test cases... 2: 2: *** No errors detected 2:  -3/3 Test #2: test_coordgen .................... Passed 1.09 sec +3/3 Test #2: test_coordgen .................... Passed 1.05 sec 100% tests passed, 0 tests failed out of 3 -Total Test time (real) = 1.09 sec +Total Test time (real) = 1.05 sec make[1]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep @@ -815,9 +851,9 @@ dh_gencontrol dh_md5sums dh_builddeb +dpkg-deb: building package 'libcoordgen-dev' in '../libcoordgen-dev_3.0.2-1_arm64.deb'. dpkg-deb: building package 'libcoordgen3' in '../libcoordgen3_3.0.2-1_arm64.deb'. dpkg-deb: building package 'libcoordgen3-dbgsym' in '../libcoordgen3-dbgsym_3.0.2-1_arm64.deb'. -dpkg-deb: building package 'libcoordgen-dev' in '../libcoordgen-dev_3.0.2-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../schroedinger-coordgenlibs_3.0.2-1_arm64.buildinfo dpkg-genchanges --build=binary -O../schroedinger-coordgenlibs_3.0.2-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -825,12 +861,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/874107/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/874107/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1540590 and its subdirectories -I: Current time: Fri Mar 27 02:16:27 -12 2026 -I: pbuilder-time-stamp: 1774620987 +I: removing directory /srv/workspace/pbuilder/874107 and its subdirectories +I: Current time: Sat Feb 22 21:54:29 +14 2025 +I: pbuilder-time-stamp: 1740210869 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/schroedinger-coordgenlibs_3.0.2-1.diff: 81.9% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/schroedinger-coordgenlibs_3.0.2-1.diff.gz b2/build.log: 84.0% -- replaced with stdout Compressing the 1st log... b1/build.log: 84.7% -- replaced with stdout Sat Feb 22 07:54:33 UTC 2025 I: diffoscope 289 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_schroedinger-coordgenlibs_trixie_arm64_1740210873 + touch /var/log/reproducible-builds/diffoscope_stamp_schroedinger-coordgenlibs_trixie_arm64_1740210873 + RESULT=0 + systemd-run '--description=diffoscope on schroedinger-coordgenlibs/3.0.2-1 in trixie/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_6-80242 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a --run-session -c jenkins-reproducible-trixie-diffoscope-957925a4-af6d-449e-9941-2f18c5640371 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a/dbd-tmp-IRwkX0G ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a/schroedinger-coordgenlibs_3.0.2-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a/schroedinger-coordgenlibs_3.0.2-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a/schroedinger-coordgenlibs_3.0.2-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a/b1/schroedinger-coordgenlibs_3.0.2-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a/b2/schroedinger-coordgenlibs_3.0.2-1_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_6-80242.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a/schroedinger-coordgenlibs_3.0.2-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a/schroedinger-coordgenlibs_3.0.2-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a/schroedinger-coordgenlibs_3.0.2-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a/b1/schroedinger-coordgenlibs_3.0.2-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.UG8Dx05a/b2/schroedinger-coordgenlibs_3.0.2-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 232ms CPU time consumed: 230ms _ _ _ ___ ___| |__ _ __ ___ ___ __| (_)_ __ __ _ ___ _ __ ___ ___ / __|/ __| '_ \| '__/ _ \ / _ \/ _` | | '_ \ / _` |/ _ \ '__|____ / __/ _ \ \__ \ (__| | | | | | (_) | __/ (_| | | | | | (_| | __/ | |_____| (_| (_) | |___/\___|_| |_|_| \___/ \___|\__,_|_|_| |_|\__, |\___|_| \___\___/ |___/ _ _ _ _ ___ _ __ __| | __ _ ___ _ __ | (_) |__ ___ / _ \| '__/ _` |/ _` |/ _ \ '_ \| | | '_ \/ __| | (_) | | | (_| | (_| | __/ | | | | | |_) \__ \ \___/|_| \__,_|\__, |\___|_| |_|_|_|_.__/|___/ |___/ Sat Feb 22 07:54:33 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists. Sat Feb 22 07:54:33 UTC 2025 I: schroedinger-coordgenlibs from trixie built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-02-22 07:54:34] INFO: Starting at 2025-02-22 07:54:34.226562 [2025-02-22 07:54:34] INFO: Generating the pages of 1 package(s) [2025-02-22 07:54:34] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/arm64/schroedinger-coordgenlibs didn't produce a buildlog, even though it has been built. [2025-02-22 07:54:34] INFO: Finished at 2025-02-22 07:54:34.617204, took: 0:00:00.390651 Sat Feb 22 07:54:34 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/arm64/schroedinger-coordgenlibs.html Sat Feb 22 07:54:34 UTC 2025 I: Submitting .buildinfo files to external archives: Sat Feb 22 07:54:34 UTC 2025 I: Submitting 8.0K b1/schroedinger-coordgenlibs_3.0.2-1_arm64.buildinfo.asc https://buildinfo.debian.net/190cd5dcb03550523a228bbd0d1961f4ed4f8e2e/schroedinger-coordgenlibs_3.0.2-1_arm64 Sat Feb 22 07:54:36 UTC 2025 I: Submitting 8.0K b2/schroedinger-coordgenlibs_3.0.2-1_arm64.buildinfo.asc https://buildinfo.debian.net/bf23ed0d60fcd6cf384fa22778a4d820e8db249f/schroedinger-coordgenlibs_3.0.2-1_arm64 Sat Feb 22 07:54:37 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Feb 22 07:54:37 UTC 2025 I: Done submitting .buildinfo files. Sat Feb 22 07:54:37 UTC 2025 I: Removing signed schroedinger-coordgenlibs_3.0.2-1_arm64.buildinfo.asc files: removed './b1/schroedinger-coordgenlibs_3.0.2-1_arm64.buildinfo.asc' removed './b2/schroedinger-coordgenlibs_3.0.2-1_arm64.buildinfo.asc' 1740210877 arm64 trixie schroedinger-coordgenlibs Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/schroedinger-coordgenlibs_3.0.2-1.rbuild.log: 82.2% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/schroedinger-coordgenlibs_3.0.2-1.rbuild.log.gz [2025-02-22 07:54:37] INFO: Starting at 2025-02-22 07:54:37.659187 [2025-02-22 07:54:37] INFO: Generating the pages of 1 package(s) [2025-02-22 07:54:38] INFO: Finished at 2025-02-22 07:54:38.026436, took: 0:00:00.367256 All cleanup done. Sat Feb 22 07:54:38 UTC 2025 - total duration: 0h 2m 6s. Sat Feb 22 07:54:38 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-0Z7Z4EPl, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 2min 10.344s CPU time consumed: 7.235s