Running as unit: rb-build-arm64_6-89497.service ==================================================================================== Tue Apr 22 13:54:19 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_6) on jenkins, called using "codethink03-arm64 codethink04-arm64" as arguments. Tue Apr 22 13:54:19 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-olt4Ydi0" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Tue Apr 22 13:54:19 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Tue Apr 22 13:54:19 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-vO40OD' Tue Apr 22 13:54:20 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Tue Apr 22 13:54:20 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-RPLDxk' ok, let's check if sambamba is building anywhere yet… ok, sambamba is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of sambamba in unstable on arm64 on jenkins now. 1st build will be done on codethink03-arm64.debian.net. 2nd build will be done on codethink04-arm64.debian.net. ============================================================================= Tue Apr 22 13:54:26 UTC 2025 I: starting to build sambamba/unstable/arm64 on jenkins on '2025-04-22 13:54' Tue Apr 22 13:54:26 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_6/89497/console.log 1745330066 arm64 unstable sambamba Tue Apr 22 13:54:26 UTC 2025 I: Downloading source for unstable/sambamba=1.0.1+dfsg-2 --2025-04-22 13:54:26-- http://deb.debian.org/debian/pool/main/s/sambamba/sambamba_1.0.1%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2276 (2.2K) [text/prs.lines.tag] Saving to: ‘sambamba_1.0.1+dfsg-2.dsc’ 0K .. 100% 368M=0s 2025-04-22 13:54:26 (368 MB/s) - ‘sambamba_1.0.1+dfsg-2.dsc’ saved [2276/2276] --2025-04-22 13:54:26-- http://deb.debian.org/debian/pool/main/s/sambamba/sambamba_1.0.1%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2276 (2.2K) [text/prs.lines.tag] Saving to: ‘sambamba_1.0.1+dfsg-2.dsc’ 0K .. 100% 368M=0s 2025-04-22 13:54:26 (368 MB/s) - ‘sambamba_1.0.1+dfsg-2.dsc’ saved [2276/2276] Tue Apr 22 13:54:26 UTC 2025 I: sambamba_1.0.1+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: sambamba Binary: sambamba Architecture: any Version: 1.0.1+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/lomereiter/sambamba Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/sambamba Vcs-Git: https://salsa.debian.org/med-team/sambamba.git Testsuite: autopkgtest Testsuite-Triggers: shunit2 Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, architecture-is-little-endian, dh-dlang, libhts-dev, meson, pkgconf, python3, shunit2 , zlib1g-dev, ldc, liblz4-dev, libcurl4-gnutls-dev | libcurl-dev, libssl-dev, libbz2-dev, libdeflate-dev, liblzma-dev, debhelper Package-List: sambamba deb science optional arch=any Checksums-Sha1: e2068bbb9952d50826d3f3b1722a6504b8d0e971 563480 sambamba_1.0.1+dfsg.orig.tar.xz 316c001f3207c3f74f7223fa9d41fc2390abf4cf 6928 sambamba_1.0.1+dfsg-2.debian.tar.xz Checksums-Sha256: 98a9f16d7f8ade548877864c157a4386341f8dc470dcabc9453674f5370e8acc 563480 sambamba_1.0.1+dfsg.orig.tar.xz d3c6c266c79e598fe17753baeea294f2c56e2623fe7758f92c789e5ec6966ca4 6928 sambamba_1.0.1+dfsg-2.debian.tar.xz Files: 8bed93884239b8dd5955739fcd15695c 563480 sambamba_1.0.1+dfsg.orig.tar.xz ddc7a8998e54cedf55b0ad7de4fbf8aa 6928 sambamba_1.0.1+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmYewYMRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHUpg/+Nt1iiW0Nry2Ss4+eWZbgixijh5ZF99rQ idQSNeUiZBYdxRTtgcsPkRQsvavtx1bOqGdD+1bn347z1bqBxBVVsWrsAl0swI/8 Uv6/I+xMy/5BT0rvVZqfKDGGTXfn1Gn/FqFRk/ORVbKN7V6/XGbKcbtqWfCa7nC+ LptDSdPqG+JBpzOPR/mdu4NlTumcXB+x2i5tA4sy2fagyzcHCkr0nDhwlduHUXqr zCx+ywA9eql7GTtfqMnm8udsZg/DZi3nTXgmvmy07BJ5XKZm/60kGCp4SmExqenp /xhgX622fZsCmTteVy7AuKcuHXSrM8EGtiayF8LHtsyVUaXsJTkccjahNjBWeWH+ kP0bhTsCS3iXqWbz0gSR0JD/voVPjxMuhYbQNKIh1OEMqp9RPW5LXh2DqOwC2NRv VsNmM3JLbr7axDSplvbOS+4smBcEqfbnyD8kudAoVT9kq44zEIm7m2HgTn7ss43p Rr0t9xEjSEhK1Qhi7/nTUOENvtBf6h50Q4y2++5e23bV6hFQOXYVj6LPOKLAZraU NyecCx07VOxAfwvItQQdjb/PJda6wMv6TvGtc78sRBoyt+7MLQSMEgi4iEF9VbGF c35qV1v+J4MaBM2ewwU9fYDxu8/AqOlOxY59FjBvo3upJywkBhfzY0/AfTAeBxEX mGkQDU8Ce0A= =fg64 -----END PGP SIGNATURE----- Tue Apr 22 13:54:26 UTC 2025 I: Checking whether the package is not for us Tue Apr 22 13:54:26 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Tue Apr 22 13:54:26 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Tue Apr 22 13:54:26 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Tue Apr 22 13:54:26 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-Fm4LM9' ==================================================================================== Mon May 25 20:17:27 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "1 sambamba unstable /srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo 1.0.1+dfsg-2" as arguments. Mon May 25 20:17:27 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-RtVPQ6DM" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon May 25 20:17:28 UTC 2026 I: Downloading source for unstable/sambamba=1.0.1+dfsg-2 Reading package lists... NOTICE: 'sambamba' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/sambamba.git Please use: git clone https://salsa.debian.org/med-team/sambamba.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 573 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main sambamba 1.0.1+dfsg-2 (dsc) [2276 B] Get:2 http://deb.debian.org/debian unstable/main sambamba 1.0.1+dfsg-2 (tar) [563 kB] Get:3 http://deb.debian.org/debian unstable/main sambamba 1.0.1+dfsg-2 (diff) [6928 B] Fetched 573 kB in 0s (5180 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'sambamba' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/sambamba.git Please use: git clone https://salsa.debian.org/med-team/sambamba.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 573 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main sambamba 1.0.1+dfsg-2 (dsc) [2276 B] Get:2 http://deb.debian.org/debian unstable/main sambamba 1.0.1+dfsg-2 (tar) [563 kB] Get:3 http://deb.debian.org/debian unstable/main sambamba 1.0.1+dfsg-2 (diff) [6928 B] Fetched 573 kB in 0s (5180 kB/s) Download complete and in download only mode ============================================================================= Building sambamba in unstable on arm64 on codethink03-arm64 now. Date: Mon May 25 21:17:28 BST 2026 Date UTC: Mon May 25 20:17:28 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Mon May 25 08:17:29 -12 2026 I: pbuilder-time-stamp: 1779740249 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [sambamba_1.0.1+dfsg-2.dsc] I: copying [./sambamba_1.0.1+dfsg.orig.tar.xz] I: copying [./sambamba_1.0.1+dfsg-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./sambamba_1.0.1+dfsg-2.dsc: unsupported subcommand dpkg-source: info: extracting sambamba in sambamba-1.0.1+dfsg dpkg-source: info: unpacking sambamba_1.0.1+dfsg.orig.tar.xz dpkg-source: info: unpacking sambamba_1.0.1+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 2to3.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1704919/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='108fa20de42c42b5a4ae98bc3f5ee535' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1704919' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo/pbuilderrc_b711 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo/b1 --logfile b1/build.log sambamba_1.0.1+dfsg-2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1704919/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), architecture-is-64-bit, architecture-is-little-endian, dh-dlang, libhts-dev, meson, pkgconf, python3, shunit2, zlib1g-dev, ldc, liblz4-dev, libcurl4-gnutls-dev | libcurl-dev, libssl-dev, libbz2-dev, libdeflate-dev, liblzma-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-little-endian; however: Package architecture-is-little-endian is not installed. pbuilder-satisfydepends-dummy depends on dh-dlang; however: Package dh-dlang is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on meson; however: Package meson is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on shunit2; however: Package shunit2 is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on ldc; however: Package ldc is not installed. pbuilder-satisfydepends-dummy depends on liblz4-dev; however: Package liblz4-dev is not installed. pbuilder-satisfydepends-dummy depends on libcurl4-gnutls-dev | libcurl-dev; however: Package libcurl4-gnutls-dev is not installed. Package libcurl-dev is not installed. pbuilder-satisfydepends-dummy depends on libssl-dev; however: Package libssl-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libdeflate-dev; however: Package libdeflate-dev is not installed. pbuilder-satisfydepends-dummy depends on liblzma-dev; however: Package liblzma-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} debhelper{a} default-d-compiler{a} dh-autoreconf{a} dh-dlang{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} krb5-multidev{a} ldc{a} libarchive-zip-perl{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libedit2{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} libllvm19{a} liblz4-dev{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libphobos2-ldc-shared-dev{a} libphobos2-ldc-shared110{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2{a} libxxhash-dev{a} libz3-4{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} meson{a} netbase{a} nettle-dev{a} ninja-build{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} shunit2{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lld llvm-19-linker-tools lynx publicsuffix wget 0 packages upgraded, 131 newly installed, 0 to remove and 0 not upgraded. Need to get 80.5 MB of archives. After unpacking 383 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.3-2 [855 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.7.1-1 [93.3 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.3-2 [1998 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.3-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025b-2 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.3-2 [1890 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.3-2 [751 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.3-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.3-1 [28.2 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41-4 [93.9 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 architecture-properties arm64 0.2.6 [2336 B] Get: 26 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1+b1 [24.2 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 comerr-dev arm64 2.1-1.47.2-1+b1 [56.2 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 39 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.4 [629 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libphobos2-ldc-shared110 arm64 1:1.40.0-5 [1085 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libphobos2-ldc-shared-dev arm64 1:1.40.0-5 [6023 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libedit2 arm64 3.1-20250104-1 [89.3 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libz3-4 arm64 4.13.3-1 [7507 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libllvm19 arm64 1:19.1.7-3 [23.3 MB] Get: 53 http://deb.debian.org/debian unstable/main arm64 ldc arm64 1:1.40.0-5 [3647 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 default-d-compiler arm64 0.6.10 [2788 B] Get: 55 http://deb.debian.org/debian unstable/main arm64 dh-dlang all 0.6.10 [5088 B] Get: 56 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 59 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libgssrpc4t64 arm64 1.21.3-5 [57.2 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libkadm5clnt-mit12 arm64 1.21.3-5 [41.1 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libkdb5-10t64 arm64 1.21.3-5 [41.3 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libkadm5srv-mit12 arm64 1.21.3-5 [53.0 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 krb5-multidev arm64 1.21.3-5 [126 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libbrotli-dev arm64 1.1.0-2+b7 [308 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-2 [107 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-2 [179 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1.1 [71.4 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.8.0-1 [63.2 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.11.0-1 [121 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.11.0-1 [28.2 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.13.0-3 [342 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libunbound8 arm64 1.22.0-1+b1 [553 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libgnutls-dane0t64 arm64 3.8.9-2 [452 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libgnutls-openssl27t64 arm64 3.8.9-2 [452 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libidn2-dev arm64 2.3.8-2 [101 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libp11-kit-dev arm64 0.25.5-3 [208 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libtasn1-6-dev arm64 4.20.0-2 [96.7 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-3 [329 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-3 [621 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 nettle-dev arm64 3.10.1-1 [1325 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libgnutls28-dev arm64 3.8.9-2 [1419 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libkrb5-dev arm64 1.21.3-5 [16.1 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 libldap-dev arm64 2.6.9+dfsg-2 [305 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libnghttp2-dev arm64 1.64.0-1.1 [112 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 libnghttp3-dev arm64 1.8.0-1 [89.4 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.11.0-1 [33.9 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 libngtcp2-dev arm64 1.11.0-1 [174 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b5 [67.5 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libssl-dev arm64 3.5.0-1 [3383 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libzstd-dev arm64 1.5.7+dfsg-1 [335 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libcurl4-gnutls-dev arm64 8.13.0-3 [474 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libdeflate-dev arm64 1.23-2 [51.3 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libhtscodecs2 arm64 1.6.1-2 [74.7 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 libhts3t64 arm64 1.21+ds-1 [426 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 liblzma-dev arm64 5.8.1-1 [344 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 libhts-dev arm64 1.21+ds-1 [1658 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 libxxhash-dev arm64 0.8.3-2 [82.6 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 liblz4-dev arm64 1.10.0-4 [85.1 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 ninja-build arm64 1.12.1-1+b1 [130 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.13.2-1 [90.5 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 125 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 78.1.0-1.2 [224 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 78.1.0-1.2 [738 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 meson all 1.7.0-1 [639 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 shunit2 all 2.1.8-4 [33.9 kB] Fetched 80.5 MB in 1s (82.7 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.3-2_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.3-2) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.7.1-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.3-2_arm64.deb ... Unpacking python3.13-minimal (3.13.3-2) ... Setting up libpython3.13-minimal:arm64 (3.13.3-2) ... Setting up libexpat1:arm64 (2.7.1-1) ... Setting up python3.13-minimal (3.13.3-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20287 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.3-1_arm64.deb ... Unpacking python3-minimal (3.13.3-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-2_all.deb ... Unpacking tzdata (2025b-2) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.4.7-1_arm64.deb ... Unpacking libffi8:arm64 (3.4.7-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.2-6_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.3-2_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.3-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.3-2_arm64.deb ... Unpacking python3.13 (3.13.3-2) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.13.3-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.13.3-1) ... Setting up python3-minimal (3.13.3-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21299 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.3-1_arm64.deb ... Unpacking python3 (3.13.3-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../003-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../006-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. 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Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../014-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../015-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../016-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../017-libcom-err2_1.47.2-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2-1+b1) ... Selecting previously unselected package comerr-dev:arm64. Preparing to unpack .../018-comerr-dev_2.1-1.47.2-1+b1_arm64.deb ... Unpacking comerr-dev:arm64 (2.1-1.47.2-1+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../019-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... 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Setting up libkadm5srv-mit12:arm64 (1.21.3-5) ... Setting up libhts3t64:arm64 (1.21+ds-1) ... Setting up krb5-multidev:arm64 (1.21.3-5) ... Setting up python3-pkg-resources (78.1.0-1.2) ... Setting up python3-setuptools (78.1.0-1.2) ... Setting up meson (1.7.0-1) ... Setting up libkrb5-dev:arm64 (1.21.3-5) ... Setting up libcurl4-gnutls-dev:arm64 (8.13.0-3) ... Setting up libhts-dev:arm64 (1.21+ds-1) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/sambamba-1.0.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../sambamba_1.0.1+dfsg-2_source.changes dpkg-buildpackage: info: source package sambamba dpkg-buildpackage: info: source version 1.0.1+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean mkdir -p obj-aarch64-linux-gnu dh clean --buildsystem=meson debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/sambamba-1.0.1+dfsg' dh_auto_clean rm -rf /build/reproducible-path/sambamba-1.0.1+dfsg/output/ rm -f test.log make[1]: Leaving directory '/build/reproducible-path/sambamba-1.0.1+dfsg' dh_autoreconf_clean -O--buildsystem=meson dh_clean -O--buildsystem=meson debian/rules binary mkdir -p obj-aarch64-linux-gnu dh binary --buildsystem=meson dh_update_autotools_config -O--buildsystem=meson dh_autoreconf -O--buildsystem=meson debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/sambamba-1.0.1+dfsg' dh_auto_configure -- -Doptimize_strong=true -Dcpp_link_args="-wi -L=-z -L=relro /usr/lib/x86_64-linux-gnu/libhts.a -L=-lz -L=-lcrypto -L=-lcurl -L=-llzma -L=-lbz2 -L=-ldeflate -L=-llz4" cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 meson setup .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/aarch64-linux-gnu -Dpython.bytecompile=-1 -Doptimize_strong=true "-Dcpp_link_args=-wi -L=-z -L=relro /usr/lib/x86_64-linux-gnu/libhts.a -L=-lz -L=-lcrypto -L=-lcurl -L=-llzma -L=-lbz2 -L=-ldeflate -L=-llz4" The Meson build system Version: 1.7.0 Source dir: /build/reproducible-path/sambamba-1.0.1+dfsg Build dir: /build/reproducible-path/sambamba-1.0.1+dfsg/obj-aarch64-linux-gnu Build type: native build Project name: Sambamba Project version: 1.0.1 C compiler for the host machine: cc (gcc 14.2.0 "cc (Debian 14.2.0-19) 14.2.0") C linker for the host machine: cc ld.bfd 2.44 D compiler for the host machine: ldc2 (llvm 1.40.0 "LDC - the LLVM D compiler (1.40.0):") D linker for the host machine: ldc2 ld.bfd 2.44 Host machine cpu family: aarch64 Host machine cpu: aarch64 ../meson.build:18: WARNING: Project does not target a minimum version but uses feature deprecated since '0.56.0': meson.source_root. use meson.project_source_root() or meson.global_source_root() instead. ../meson.build:19: WARNING: Project does not target a minimum version but uses feature deprecated since '0.56.0': meson.build_root. use meson.project_build_root() or meson.global_build_root() instead. Found pkg-config: YES (/usr/bin/pkg-config) 1.8.1 Run-time dependency liblz4 found: YES 1.10.0 Run-time dependency zlib found: YES 1.3.1 Program ldc2 found: YES (/usr/bin/ldc2) Program mkdir found: YES (/usr/bin/mkdir) ../meson.build:220: WARNING: Project does not target a minimum version but uses feature deprecated since '0.55.0': ExternalProgram.path. use ExternalProgram.full_path() instead WARNING: You should add the boolean check kwarg to the run_command call. It currently defaults to false, but it will default to true in meson 2.0. See also: https://github.com/mesonbuild/meson/issues/9300 ../meson.build:227: WARNING: Project does not target a minimum version but uses feature deprecated since '0.55.0': ExternalProgram.path. use ExternalProgram.full_path() instead Program /build/reproducible-path/sambamba-1.0.1+dfsg/test/test_suite.sh found: YES (/build/reproducible-path/sambamba-1.0.1+dfsg/test/test_suite.sh) Build targets in project: 1 WARNING: Deprecated features used: * 0.55.0: {'ExternalProgram.path'} * 0.56.0: {'meson.build_root', 'meson.source_root'} Sambamba 1.0.1 User defined options buildtype : plain cpp_link_args : -wi -L=-z -L=relro /usr/lib/x86_64-linux-gnu/libhts.a -L=-lz -L=-lcrypto -L=-lcurl -L=-llzma -L=-lbz2 -L=-ldeflate -L=-llz4 libdir : lib/aarch64-linux-gnu localstatedir : /var optimize_strong : true prefix : /usr python.bytecompile: -1 sysconfdir : /etc wrap_mode : nodownload Found ninja-1.12.1 at /usr/bin/ninja make[1]: Leaving directory '/build/reproducible-path/sambamba-1.0.1+dfsg' dh_auto_build -O--buildsystem=meson cd obj-aarch64-linux-gnu && LC_ALL=C.UTF-8 ninja -j12 -v [1/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_main.d.o.deps -of=sambamba.p/sambamba_main.d.o -c ../sambamba/main.d [2/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_index.d.o.deps -of=sambamba.p/sambamba_index.d.o -c ../sambamba/index.d [3/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_file.d.o.deps -of=sambamba.p/sambamba_utils_common_file.d.o -c ../sambamba/utils/common/file.d [4/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_markdup2.d.o.deps -of=sambamba.p/sambamba_markdup2.d.o -c ../sambamba/markdup2.d [5/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_intervaltree.d.o.deps -of=sambamba.p/sambamba_utils_common_intervaltree.d.o -c ../sambamba/utils/common/intervaltree.d [6/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_fixbins.d.o.deps -of=sambamba.p/sambamba_fixbins.d.o -c ../sambamba/fixbins.d [7/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_overwrite.d.o.deps -of=sambamba.p/sambamba_utils_common_overwrite.d.o -c ../sambamba/utils/common/overwrite.d [8/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_pratt_parser.d.o.deps -of=sambamba.p/sambamba_utils_common_pratt_parser.d.o -c ../sambamba/utils/common/pratt_parser.d [9/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_ldc_gc_workaround.d.o.deps -of=sambamba.p/sambamba_utils_common_ldc_gc_workaround.d.o -c ../sambamba/utils/common/ldc_gc_workaround.d [10/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_subsample.d.o.deps -of=sambamba.p/sambamba_subsample.d.o -c ../sambamba/subsample.d [11/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_readstorage.d.o.deps -of=sambamba.p/sambamba_utils_common_readstorage.d.o -c ../sambamba/utils/common/readstorage.d [12/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_bed.d.o.deps -of=sambamba.p/sambamba_utils_common_bed.d.o -c ../sambamba/utils/common/bed.d [13/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_flagstat.d.o.deps -of=sambamba.p/sambamba_flagstat.d.o -c ../sambamba/flagstat.d [14/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_slice.d.o.deps -of=sambamba.p/sambamba_slice.d.o -c ../sambamba/slice.d [15/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_view_alignmentrangeprocessor.d.o.deps -of=sambamba.p/sambamba_utils_view_alignmentrangeprocessor.d.o -c ../sambamba/utils/view/alignmentrangeprocessor.d [16/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_tmpdir.d.o.deps -of=sambamba.p/sambamba_utils_common_tmpdir.d.o -c ../sambamba/utils/common/tmpdir.d [17/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_base.d.o.deps -of=sambamba.p/BioD_bio_core_base.d.o -c ../BioD/bio/core/base.d [18/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_validate.d.o.deps -of=sambamba.p/sambamba_validate.d.o -c ../sambamba/validate.d [19/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_chunk.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_chunk.d.o -c ../BioD/bio/core/bgzf/chunk.d [20/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_block.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_block.d.o -c ../BioD/bio/core/bgzf/block.d [21/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_progressbar.d.o.deps -of=sambamba.p/sambamba_utils_common_progressbar.d.o -c ../sambamba/utils/common/progressbar.d [22/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_constants.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_constants.d.o -c ../BioD/bio/core/bgzf/constants.d [23/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_compress.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_compress.d.o -c 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-of=sambamba.p/BioD_bio_core_bgzf_outputstream.d.o -c ../BioD/bio/core/bgzf/outputstream.d [27/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_genotype.d.o.deps -of=sambamba.p/BioD_bio_core_genotype.d.o -c ../BioD/bio/core/genotype.d [28/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_decompress.d.o.deps -of=sambamba.p/BioD_bio_core_decompress.d.o -c ../BioD/bio/core/decompress.d [29/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_kmer.d.o.deps -of=sambamba.p/BioD_bio_core_kmer.d.o -c ../BioD/bio/core/kmer.d [30/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_region.d.o.deps -of=sambamba.p/BioD_bio_core_region.d.o -c ../BioD/bio/core/region.d [31/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_inputstream.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_inputstream.d.o -c ../BioD/bio/core/bgzf/inputstream.d [32/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_tinymap.d.o.deps -of=sambamba.p/BioD_bio_core_tinymap.d.o -c ../BioD/bio/core/tinymap.d [33/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_algo.d.o.deps -of=sambamba.p/BioD_bio_core_utils_algo.d.o -c ../BioD/bio/core/utils/algo.d [34/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_sequence.d.o.deps -of=sambamba.p/BioD_bio_core_sequence.d.o -c ../BioD/bio/core/sequence.d [35/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_exception.d.o.deps -of=sambamba.p/BioD_bio_core_utils_exception.d.o -c ../BioD/bio/core/utils/exception.d [36/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_memoize.d.o.deps -of=sambamba.p/BioD_bio_core_utils_memoize.d.o -c ../BioD/bio/core/utils/memoize.d [37/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_format.d.o.deps -of=sambamba.p/BioD_bio_core_utils_format.d.o -c ../BioD/bio/core/utils/format.d [38/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_range.d.o.deps -of=sambamba.p/BioD_bio_core_utils_range.d.o -c ../BioD/bio/core/utils/range.d [39/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_roundbuf.d.o.deps -of=sambamba.p/BioD_bio_core_utils_roundbuf.d.o -c ../BioD/bio/core/utils/roundbuf.d [40/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_bylinefast.d.o.deps -of=sambamba.p/BioD_bio_core_utils_bylinefast.d.o -c ../BioD/bio/core/utils/bylinefast.d [41/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_switchendianness.d.o.deps -of=sambamba.p/BioD_bio_core_utils_switchendianness.d.o -c ../BioD/bio/core/utils/switchendianness.d [42/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_outbuffer.d.o.deps -of=sambamba.p/BioD_bio_core_utils_outbuffer.d.o -c ../BioD/bio/core/utils/outbuffer.d [43/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_zlib.d.o.deps -of=sambamba.p/BioD_bio_core_utils_zlib.d.o -c ../BioD/bio/core/utils/zlib.d [44/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_stream.d.o.deps -of=sambamba.p/BioD_bio_core_utils_stream.d.o -c ../BioD/bio/core/utils/stream.d ../BioD/bio/core/utils/stream.d(32): Deprecation: switch case fallthrough - use 'goto case;' if intended [45/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bam_header.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bam_header.d.o -c ../BioD/bio/std/experimental/hts/bam/header.d [46/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_tmpfile.d.o.deps -of=sambamba.p/BioD_bio_core_utils_tmpfile.d.o -c ../BioD/bio/core/utils/tmpfile.d [47/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_merge.d.o.deps -of=sambamba.p/sambamba_merge.d.o -c ../sambamba/merge.d [48/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_view_headerserializer.d.o.deps -of=sambamba.p/sambamba_utils_view_headerserializer.d.o -c ../sambamba/utils/view/headerserializer.d [49/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_constants.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_constants.d.o -c ../BioD/bio/std/experimental/hts/constants.d [50/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_hashing.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_hashing.d.o -c ../BioD/bio/std/experimental/hts/hashing.d [51/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bam_writer.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bam_writer.d.o -c ../BioD/bio/std/experimental/hts/bam/writer.d [52/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_logger.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_logger.d.o -c ../BioD/bio/std/experimental/hts/logger.d [53/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_reads.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_reads.d.o -c ../BioD/bio/std/experimental/hts/reads.d [54/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_pileup.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_pileup.d.o -c ../BioD/bio/std/experimental/hts/pileup.d [55/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_unpack.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_unpack.d.o -c ../BioD/bio/std/experimental/hts/unpack.d [56/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_sort.d.o.deps -of=sambamba.p/sambamba_sort.d.o -c ../sambamba/sort.d [57/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bgzf_writer.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bgzf_writer.d.o -c ../BioD/bio/std/experimental/hts/bgzf_writer.d [58/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_genotype_maf.d.o.deps -of=sambamba.p/BioD_bio_std_genotype_maf.d.o -c ../BioD/bio/std/genotype/maf.d [59/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_file_fastq.d.o.deps -of=sambamba.p/BioD_bio_std_file_fastq.d.o -c ../BioD/bio/std/file/fastq.d [60/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_abstractreader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_abstractreader.d.o -c ../BioD/bio/std/hts/bam/abstractreader.d [61/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_bai_bin.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_bai_bin.d.o -c ../BioD/bio/std/hts/bam/bai/bin.d [62/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_baifile.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_baifile.d.o -c ../BioD/bio/std/hts/bam/baifile.d [63/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_filtering.d.o.deps -of=sambamba.p/sambamba_utils_common_filtering.d.o -c ../sambamba/utils/common/filtering.d [64/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bgzf.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bgzf.d.o -c ../BioD/bio/std/experimental/hts/bgzf.d ../BioD/bio/std/experimental/hts/bgzf.d(91): Deprecation: package bio.core.utils is not accessible here, perhaps add 'static import bio.core.utils;' ../BioD/bio/std/experimental/hts/bgzf.d(91): Deprecation: module bio.core.utils.zlib is not accessible here, perhaps add 'static import bio.core.utils.zlib;' [65/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_baseinfo.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_baseinfo.d.o -c ../BioD/bio/std/hts/bam/baseinfo.d [66/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_constants.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_constants.d.o -c ../BioD/bio/std/hts/bam/constants.d [67/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_core.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_core.d.o -c ../BioD/bio/std/hts/bam/md/core.d [68/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_cigar.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_cigar.d.o -c ../BioD/bio/std/hts/bam/cigar.d [69/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bam_reader.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bam_reader.d.o -c ../BioD/bio/std/experimental/hts/bam/reader.d [70/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_parse.d.o.deps 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-makedeps=sambamba.p/BioD_bio_std_file_fasta.d.o.deps -of=sambamba.p/BioD_bio_std_file_fasta.d.o -c ../BioD/bio/std/file/fasta.d [74/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_pileup.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_pileup.d.o -c ../BioD/bio/std/hts/bam/pileup.d [75/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_view.d.o.deps -of=sambamba.p/sambamba_view.d.o -c ../sambamba/view.d [76/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_markdup.d.o.deps -of=sambamba.p/sambamba_markdup.d.o -c ../sambamba/markdup.d [77/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_bai_indexing.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_bai_indexing.d.o -c ../BioD/bio/std/hts/bam/bai/indexing.d [78/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_readrange.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_readrange.d.o -c ../BioD/bio/std/hts/bam/readrange.d [79/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_region.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_region.d.o -c ../BioD/bio/std/hts/bam/region.d [80/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_randomaccessmanager.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_randomaccessmanager.d.o -c ../BioD/bio/std/hts/bam/randomaccessmanager.d [81/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_splitter.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_splitter.d.o -c ../BioD/bio/std/hts/bam/splitter.d [82/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi 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-I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_validation_samheader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_validation_samheader.d.o -c ../BioD/bio/std/hts/bam/validation/samheader.d [86/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_iontorrent_flowindex.d.o.deps -of=sambamba.p/BioD_bio_std_hts_iontorrent_flowindex.d.o -c ../BioD/bio/std/hts/iontorrent/flowindex.d [87/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_genotype_snp.d.o.deps 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-makedeps=sambamba.p/BioD_bio_std_hts_iontorrent_flowcall.d.o.deps -of=sambamba.p/BioD_bio_std_hts_iontorrent_flowcall.d.o -c ../BioD/bio/std/hts/iontorrent/flowcall.d [91/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_queryparser.d.o.deps -of=sambamba.p/sambamba_utils_common_queryparser.d.o -c ../sambamba/utils/common/queryparser.d [92/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_snpcallers_maq.d.o.deps -of=sambamba.p/BioD_bio_std_hts_snpcallers_maq.d.o -c ../BioD/bio/std/hts/snpcallers/maq.d [93/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g 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-I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_sam_utils_recordparser.d.o.deps -of=sambamba.p/BioD_bio_std_hts_sam_utils_recordparser.d.o -c ../BioD/bio/std/hts/sam/utils/recordparser.d [97/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_utils_graph.d.o.deps -of=sambamba.p/BioD_bio_std_hts_utils_graph.d.o -c ../BioD/bio/std/hts/utils/graph.d [98/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_maf_block.d.o.deps -of=sambamba.p/BioD_bio_std_maf_block.d.o -c 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-of=sambamba.p/BioD_bio_std_hts_utils_value.d.o -c ../BioD/bio/std/hts/utils/value.d [105/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_maf_parser.d.o.deps -of=sambamba.p/BioD_bio_std_maf_parser.d.o -c ../BioD/bio/std/maf/parser.d [106/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_utils_roundup.d.o.deps -of=sambamba.p/BioD_bio_std_sff_utils_roundup.d.o -c ../BioD/bio/std/sff/utils/roundup.d [107/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_maf_reader.d.o.deps -of=sambamba.p/BioD_bio_std_maf_reader.d.o -c ../BioD/bio/std/maf/reader.d [108/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_readrange.d.o.deps -of=sambamba.p/BioD_bio_std_sff_readrange.d.o -c ../BioD/bio/std/sff/readrange.d [109/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_writer.d.o.deps -of=sambamba.p/BioD_bio_std_sff_writer.d.o -c ../BioD/bio/std/sff/writer.d [110/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_doformat.d.o.deps -of=sambamba.p/BioD_contrib_undead_doformat.d.o -c ../BioD/contrib/undead/doformat.d ../BioD/contrib/undead/doformat.d(128): Deprecation: use of imaginary type `ifloat` is deprecated, use `float` instead ../BioD/contrib/undead/doformat.d(129): Deprecation: use of imaginary type `idouble` is deprecated, use `double` instead ../BioD/contrib/undead/doformat.d(130): Deprecation: use of imaginary type `ireal` is deprecated, use `real` instead ../BioD/contrib/undead/doformat.d(131): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/doformat.d(132): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/doformat.d(133): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead [111/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_reader.d.o.deps -of=sambamba.p/BioD_bio_std_sff_reader.d.o -c ../BioD/bio/std/sff/reader.d [112/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_utf.d.o.deps -of=sambamba.p/BioD_contrib_undead_utf.d.o -c ../BioD/contrib/undead/utf.d [113/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_cstream.d.o.deps -of=sambamba.p/BioD_contrib_undead_cstream.d.o -c ../BioD/contrib/undead/cstream.d [114/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_internal_file.d.o.deps -of=sambamba.p/BioD_contrib_undead_internal_file.d.o -c ../BioD/contrib/undead/internal/file.d [115/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/utils_lz4.d.o.deps -of=sambamba.p/utils_lz4.d.o -c ../utils/lz4.d [116/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_sam_utils_fastrecordparser.d.o.deps -of=sambamba.p/BioD_bio_std_hts_sam_utils_fastrecordparser.d.o -c ../BioD/bio/std/hts/sam/utils/fastrecordparser.d [117/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_tagvalue.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_tagvalue.d.o -c ../BioD/bio/std/hts/bam/tagvalue.d [118/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/thirdparty_mergesort.d.o.deps -of=sambamba.p/thirdparty_mergesort.d.o -c ../thirdparty/mergesort.d [119/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/utils_version_.d.o.deps -of=sambamba.p/utils_version_.d.o -c ../utils/version_.d [120/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/thirdparty_unstablesort.d.o.deps -of=sambamba.p/thirdparty_unstablesort.d.o -c ../thirdparty/unstablesort.d [121/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_attribute.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_attribute.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/attribute.d [122/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_common.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_common.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/common.d [123/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/utils_strip_bcf_header.d.o.deps -of=sambamba.p/utils_strip_bcf_header.d.o -c ../utils/strip_bcf_header.d [124/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_package.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_package.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/package.d [125/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_exception.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_exception.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/exception.d [126/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_register.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_register.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/register.d [127/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_buffer.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_buffer.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/buffer.d [128/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/_build_reproducible-path_sambamba-1.0.1+dfsg_obj-aarch64-linux-gnu_utils_ldc_version_info_.d.o.deps -of=sambamba.p/_build_reproducible-path_sambamba-1.0.1+dfsg_obj-aarch64-linux-gnu_utils_ldc_version_info_.d.o -c /build/reproducible-path/sambamba-1.0.1+dfsg/obj-aarch64-linux-gnu/utils/ldc_version_info_.d [129/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_validation_alignment.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_validation_alignment.d.o -c ../BioD/bio/std/hts/bam/validation/alignment.d [130/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_value.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_value.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/value.d [131/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_packer.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_packer.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/packer.d [132/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_streaming_unpacker.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_streaming_unpacker.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/streaming_unpacker.d [133/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_read.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_read.d.o -c ../BioD/bio/std/hts/bam/read.d [134/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_sam_header.d.o.deps -of=sambamba.p/BioD_bio_std_hts_sam_header.d.o -c ../BioD/bio/std/hts/sam/header.d [135/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_multireader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_multireader.d.o -c ../BioD/bio/std/hts/bam/multireader.d [136/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_utils_samheadermerger.d.o.deps -of=sambamba.p/BioD_bio_std_hts_utils_samheadermerger.d.o -c ../BioD/bio/std/hts/utils/samheadermerger.d [137/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_stream.d.o.deps -of=sambamba.p/BioD_contrib_undead_stream.d.o -c ../BioD/contrib/undead/stream.d ../BioD/contrib/undead/stream.d(450): Deprecation: use of imaginary type `ifloat` is deprecated, use `float` instead ../BioD/contrib/undead/stream.d(451): Deprecation: use of imaginary type `idouble` is deprecated, use `double` instead ../BioD/contrib/undead/stream.d(452): Deprecation: use of imaginary type `ireal` is deprecated, use `real` instead ../BioD/contrib/undead/stream.d(453): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/stream.d(454): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/stream.d(455): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/stream.d(1116): Deprecation: use of imaginary type `ifloat` is deprecated, use `float` instead ../BioD/contrib/undead/stream.d(1117): Deprecation: use of imaginary type `idouble` is deprecated, use `double` instead ../BioD/contrib/undead/stream.d(1118): Deprecation: use of imaginary type `ireal` is deprecated, use `real` instead ../BioD/contrib/undead/stream.d(1119): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/stream.d(1120): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/stream.d(1121): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/doformat.d(494): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/doformat.d(449): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/doformat.d(447): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/doformat.d(449): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/doformat.d(447): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/doformat.d(449): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/doformat.d(447): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/stream.d(2472): Deprecation: use of imaginary type `ifloat` is deprecated, use `float` instead 11 deprecation warnings omitted, use `-verrors=0` to show all [138/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_pileup.d.o.deps -of=sambamba.p/sambamba_pileup.d.o -c ../sambamba/pileup.d [139/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_unpacker.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_unpacker.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/unpacker.d [140/140] ldc2 -of=sambamba sambamba.p/sambamba_main.d.o sambamba.p/sambamba_depth.d.o sambamba.p/sambamba_fixbins.d.o sambamba.p/sambamba_flagstat.d.o sambamba.p/sambamba_index.d.o sambamba.p/sambamba_markdup2.d.o sambamba.p/sambamba_markdup.d.o sambamba.p/sambamba_merge.d.o sambamba.p/sambamba_pileup.d.o sambamba.p/sambamba_slice.d.o sambamba.p/sambamba_sort.d.o sambamba.p/sambamba_subsample.d.o sambamba.p/sambamba_utils_common_bed.d.o sambamba.p/sambamba_utils_common_file.d.o sambamba.p/sambamba_utils_common_filtering.d.o sambamba.p/sambamba_utils_common_intervaltree.d.o sambamba.p/sambamba_utils_common_ldc_gc_workaround.d.o sambamba.p/sambamba_utils_common_overwrite.d.o sambamba.p/sambamba_utils_common_pratt_parser.d.o sambamba.p/sambamba_utils_common_progressbar.d.o sambamba.p/sambamba_utils_common_queryparser.d.o sambamba.p/sambamba_utils_common_readstorage.d.o sambamba.p/sambamba_utils_common_tmpdir.d.o sambamba.p/sambamba_utils_view_alignmentrangeprocessor.d.o sambamba.p/sambamba_utils_view_headerserializer.d.o sambamba.p/sambamba_validate.d.o sambamba.p/sambamba_view.d.o sambamba.p/BioD_bio_core_base.d.o sambamba.p/BioD_bio_core_bgzf_block.d.o sambamba.p/BioD_bio_core_bgzf_chunk.d.o sambamba.p/BioD_bio_core_bgzf_compress.d.o sambamba.p/BioD_bio_core_bgzf_constants.d.o sambamba.p/BioD_bio_core_bgzf_inputstream.d.o sambamba.p/BioD_bio_core_bgzf_outputstream.d.o sambamba.p/BioD_bio_core_bgzf_virtualoffset.d.o sambamba.p/BioD_bio_core_call.d.o sambamba.p/BioD_bio_core_decompress.d.o sambamba.p/BioD_bio_core_genotype.d.o sambamba.p/BioD_bio_core_kmer.d.o sambamba.p/BioD_bio_core_region.d.o sambamba.p/BioD_bio_core_sequence.d.o sambamba.p/BioD_bio_core_tinymap.d.o sambamba.p/BioD_bio_core_utils_algo.d.o sambamba.p/BioD_bio_core_utils_bylinefast.d.o sambamba.p/BioD_bio_core_utils_exception.d.o sambamba.p/BioD_bio_core_utils_format.d.o sambamba.p/BioD_bio_core_utils_memoize.d.o sambamba.p/BioD_bio_core_utils_outbuffer.d.o sambamba.p/BioD_bio_core_utils_range.d.o sambamba.p/BioD_bio_core_utils_roundbuf.d.o sambamba.p/BioD_bio_core_utils_stream.d.o sambamba.p/BioD_bio_core_utils_switchendianness.d.o sambamba.p/BioD_bio_core_utils_tmpfile.d.o sambamba.p/BioD_bio_core_utils_zlib.d.o sambamba.p/BioD_bio_std_experimental_hts_bam_header.d.o sambamba.p/BioD_bio_std_experimental_hts_bam_reader.d.o sambamba.p/BioD_bio_std_experimental_hts_bam_writer.d.o sambamba.p/BioD_bio_std_experimental_hts_bgzf.d.o sambamba.p/BioD_bio_std_experimental_hts_bgzf_writer.d.o sambamba.p/BioD_bio_std_experimental_hts_constants.d.o sambamba.p/BioD_bio_std_experimental_hts_hashing.d.o sambamba.p/BioD_bio_std_experimental_hts_logger.d.o sambamba.p/BioD_bio_std_experimental_hts_pileup.d.o sambamba.p/BioD_bio_std_experimental_hts_reads.d.o sambamba.p/BioD_bio_std_experimental_hts_unpack.d.o sambamba.p/BioD_bio_std_file_fai.d.o sambamba.p/BioD_bio_std_file_fasta.d.o sambamba.p/BioD_bio_std_file_fastq.d.o sambamba.p/BioD_bio_std_genotype_maf.d.o sambamba.p/BioD_bio_std_genotype_snp.d.o sambamba.p/BioD_bio_std_hts_bam_abstractreader.d.o sambamba.p/BioD_bio_std_hts_bam_bai_bin.d.o sambamba.p/BioD_bio_std_hts_bam_baifile.d.o sambamba.p/BioD_bio_std_hts_bam_bai_indexing.d.o sambamba.p/BioD_bio_std_hts_bam_baseinfo.d.o sambamba.p/BioD_bio_std_hts_bam_cigar.d.o sambamba.p/BioD_bio_std_hts_bam_constants.d.o sambamba.p/BioD_bio_std_hts_bam_md_core.d.o sambamba.p/BioD_bio_std_hts_bam_md_operation.d.o sambamba.p/BioD_bio_std_hts_bam_md_parse.d.o sambamba.p/BioD_bio_std_hts_bam_md_reconstruct.d.o sambamba.p/BioD_bio_std_hts_bam_multireader.d.o sambamba.p/BioD_bio_std_hts_bam_pileup.d.o sambamba.p/BioD_bio_std_hts_bam_randomaccessmanager.d.o sambamba.p/BioD_bio_std_hts_bam_read.d.o sambamba.p/BioD_bio_std_hts_bam_reader.d.o sambamba.p/BioD_bio_std_hts_bam_readrange.d.o sambamba.p/BioD_bio_std_hts_bam_reference.d.o sambamba.p/BioD_bio_std_hts_bam_referenceinfo.d.o sambamba.p/BioD_bio_std_hts_bam_region.d.o sambamba.p/BioD_bio_std_hts_bam_splitter.d.o sambamba.p/BioD_bio_std_hts_bam_tagvalue.d.o sambamba.p/BioD_bio_std_hts_bam_validation_alignment.d.o sambamba.p/BioD_bio_std_hts_bam_validation_samheader.d.o sambamba.p/BioD_bio_std_hts_bam_writer.d.o sambamba.p/BioD_bio_std_hts_iontorrent_flowcall.d.o sambamba.p/BioD_bio_std_hts_iontorrent_flowindex.d.o sambamba.p/BioD_bio_std_hts_sam_header.d.o sambamba.p/BioD_bio_std_hts_sam_reader.d.o sambamba.p/BioD_bio_std_hts_sam_utils_fastrecordparser.d.o sambamba.p/BioD_bio_std_hts_sam_utils_recordparser.d.o sambamba.p/BioD_bio_std_hts_snpcallers_maq.d.o sambamba.p/BioD_bio_std_hts_snpcallers_simple.d.o sambamba.p/BioD_bio_std_hts_utils_array.d.o sambamba.p/BioD_bio_std_hts_utils_graph.d.o sambamba.p/BioD_bio_std_hts_utils_samheadermerger.d.o sambamba.p/BioD_bio_std_hts_utils_value.d.o sambamba.p/BioD_bio_std_maf_block.d.o sambamba.p/BioD_bio_std_maf_parser.d.o sambamba.p/BioD_bio_std_maf_reader.d.o sambamba.p/BioD_bio_std_range_splitter.d.o sambamba.p/BioD_bio_std_sff_constants.d.o sambamba.p/BioD_bio_std_sff_index.d.o sambamba.p/BioD_bio_std_sff_read.d.o sambamba.p/BioD_bio_std_sff_reader.d.o sambamba.p/BioD_bio_std_sff_readrange.d.o sambamba.p/BioD_bio_std_sff_utils_roundup.d.o sambamba.p/BioD_bio_std_sff_writer.d.o sambamba.p/BioD_contrib_undead_cstream.d.o sambamba.p/BioD_contrib_undead_doformat.d.o sambamba.p/BioD_contrib_undead_internal_file.d.o sambamba.p/BioD_contrib_undead_stream.d.o sambamba.p/BioD_contrib_undead_utf.d.o sambamba.p/utils_lz4.d.o sambamba.p/utils_strip_bcf_header.d.o sambamba.p/utils_version_.d.o sambamba.p/thirdparty_mergesort.d.o sambamba.p/thirdparty_unstablesort.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_attribute.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_common.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_package.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_register.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_unpacker.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_buffer.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_exception.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_packer.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_streaming_unpacker.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_value.d.o sambamba.p/_build_reproducible-path_sambamba-1.0.1+dfsg_obj-aarch64-linux-gnu_utils_ldc_version_info_.d.o -L=-flto=full -L=-rpath -L=/usr/lib/aarch64-linux-gnu -L=-rpath-link -L=/usr/lib/aarch64-linux-gnu -L=--allow-shlib-undefined -link-defaultlib-shared -L=-z -L=relro -release -wi -g -O2 /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblz4.so /usr/lib/aarch64-linux-gnu/libxxhash.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/sambamba-1.0.1+dfsg' echo "FIXME: Build time tests needs fixing" FIXME: Build time tests needs fixing make[1]: Leaving directory '/build/reproducible-path/sambamba-1.0.1+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=meson dh_prep -O--buildsystem=meson dh_auto_install --destdir=debian/sambamba/ -O--buildsystem=meson cd obj-aarch64-linux-gnu && DESTDIR=/build/reproducible-path/sambamba-1.0.1\+dfsg/debian/sambamba LC_ALL=C.UTF-8 ninja install [0/1] Installing files Installing sambamba to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/bin Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba-flagstat.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba-index.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba-markdup.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba-merge.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba-pileup.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba-slice.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba-sort.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba-view.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/etc/bash_completion.d/sambamba to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/bash-completion/completions dh_installdocs -O--buildsystem=meson dh_installchangelogs -O--buildsystem=meson dh_installman -O--buildsystem=meson dh_installsystemduser -O--buildsystem=meson dh_perl -O--buildsystem=meson dh_link -O--buildsystem=meson dh_strip_nondeterminism -O--buildsystem=meson dh_compress -O--buildsystem=meson dh_fixperms -O--buildsystem=meson debian/rules override_dh_missing make[1]: Entering directory '/build/reproducible-path/sambamba-1.0.1+dfsg' dh_missing --fail-missing make[1]: Leaving directory '/build/reproducible-path/sambamba-1.0.1+dfsg' dh_dwz -a -O--buildsystem=meson dh_strip -a -O--buildsystem=meson dh_makeshlibs -a -O--buildsystem=meson dh_shlibdeps -a -O--buildsystem=meson dh_installdeb -O--buildsystem=meson dh_gencontrol -O--buildsystem=meson dh_md5sums -O--buildsystem=meson dh_builddeb -O--buildsystem=meson dpkg-deb: building package 'sambamba' in '../sambamba_1.0.1+dfsg-2_arm64.deb'. dpkg-deb: building package 'sambamba-dbgsym' in '../sambamba-dbgsym_1.0.1+dfsg-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../sambamba_1.0.1+dfsg-2_arm64.buildinfo dpkg-genchanges --build=binary -O../sambamba_1.0.1+dfsg-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1704919 and its subdirectories I: Current time: Mon May 25 08:19:46 -12 2026 I: pbuilder-time-stamp: 1779740386 Mon May 25 20:19:46 UTC 2026 I: Signing ./b1/sambamba_1.0.1+dfsg-2_arm64.buildinfo as sambamba_1.0.1+dfsg-2_arm64.buildinfo.asc Mon May 25 20:19:46 UTC 2026 I: Signed ./b1/sambamba_1.0.1+dfsg-2_arm64.buildinfo as ./b1/sambamba_1.0.1+dfsg-2_arm64.buildinfo.asc Mon May 25 20:19:46 UTC 2026 - build #1 for sambamba/unstable/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Mon May 25 20:19:46 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-RtVPQ6DM, removing. /srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Apr 22 13:56 b1 drwxr-xr-x 2 jenkins jenkins 4096 Apr 22 13:54 b2 -rw------- 1 jenkins jenkins 3419 Apr 22 13:54 rbuildlog.TRLEZpN -rw-r--r-- 1 jenkins jenkins 2276 Apr 16 2024 sambamba_1.0.1+dfsg-2.dsc /srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo/b1: total 6900 -rw-r--r-- 1 jenkins jenkins 121476 Apr 22 13:56 build.log -rw-r--r-- 1 jenkins jenkins 6397176 Apr 22 13:56 sambamba-dbgsym_1.0.1+dfsg-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 6928 Apr 22 13:56 sambamba_1.0.1+dfsg-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2276 Apr 22 13:56 sambamba_1.0.1+dfsg-2.dsc -rw-r--r-- 1 jenkins jenkins 8167 Apr 22 13:56 sambamba_1.0.1+dfsg-2_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 9049 Apr 22 13:56 sambamba_1.0.1+dfsg-2_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1651 Apr 22 13:56 sambamba_1.0.1+dfsg-2_arm64.changes -rw-r--r-- 1 jenkins jenkins 500660 Apr 22 13:56 sambamba_1.0.1+dfsg-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 1516 Apr 22 13:56 sambamba_1.0.1+dfsg-2_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo/b2: total 0 Tue Apr 22 13:56:47 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon May 25 08:17:29 -12 2026 I: pbuilder-time-stamp: 1779740249 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [sambamba_1.0.1+dfsg-2.dsc] I: copying [./sambamba_1.0.1+dfsg.orig.tar.xz] I: copying [./sambamba_1.0.1+dfsg-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./sambamba_1.0.1+dfsg-2.dsc: unsupported subcommand dpkg-source: info: extracting sambamba in sambamba-1.0.1+dfsg dpkg-source: info: unpacking sambamba_1.0.1+dfsg.orig.tar.xz dpkg-source: info: unpacking sambamba_1.0.1+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 2to3.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1704919/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='108fa20de42c42b5a4ae98bc3f5ee535' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1704919' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo/pbuilderrc_b711 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo/b1 --logfile b1/build.log sambamba_1.0.1+dfsg-2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1704919/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), architecture-is-64-bit, architecture-is-little-endian, dh-dlang, libhts-dev, meson, pkgconf, python3, shunit2, zlib1g-dev, ldc, liblz4-dev, libcurl4-gnutls-dev | libcurl-dev, libssl-dev, libbz2-dev, libdeflate-dev, liblzma-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-little-endian; however: Package architecture-is-little-endian is not installed. pbuilder-satisfydepends-dummy depends on dh-dlang; however: Package dh-dlang is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on meson; however: Package meson is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on shunit2; however: Package shunit2 is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on ldc; however: Package ldc is not installed. pbuilder-satisfydepends-dummy depends on liblz4-dev; however: Package liblz4-dev is not installed. pbuilder-satisfydepends-dummy depends on libcurl4-gnutls-dev | libcurl-dev; however: Package libcurl4-gnutls-dev is not installed. Package libcurl-dev is not installed. pbuilder-satisfydepends-dummy depends on libssl-dev; however: Package libssl-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libdeflate-dev; however: Package libdeflate-dev is not installed. pbuilder-satisfydepends-dummy depends on liblzma-dev; however: Package liblzma-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} debhelper{a} default-d-compiler{a} dh-autoreconf{a} dh-dlang{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} krb5-multidev{a} ldc{a} libarchive-zip-perl{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libedit2{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} libllvm19{a} liblz4-dev{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libphobos2-ldc-shared-dev{a} libphobos2-ldc-shared110{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2{a} libxxhash-dev{a} libz3-4{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} meson{a} netbase{a} nettle-dev{a} ninja-build{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} shunit2{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lld llvm-19-linker-tools lynx publicsuffix wget 0 packages upgraded, 131 newly installed, 0 to remove and 0 not upgraded. Need to get 80.5 MB of archives. After unpacking 383 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.3-2 [855 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.7.1-1 [93.3 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.3-2 [1998 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.3-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025b-2 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.3-2 [1890 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.3-2 [751 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.3-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.3-1 [28.2 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41-4 [93.9 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 architecture-properties arm64 0.2.6 [2336 B] Get: 26 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1+b1 [24.2 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 comerr-dev arm64 2.1-1.47.2-1+b1 [56.2 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 39 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.4 [629 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libphobos2-ldc-shared110 arm64 1:1.40.0-5 [1085 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libphobos2-ldc-shared-dev arm64 1:1.40.0-5 [6023 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libedit2 arm64 3.1-20250104-1 [89.3 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libz3-4 arm64 4.13.3-1 [7507 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libllvm19 arm64 1:19.1.7-3 [23.3 MB] Get: 53 http://deb.debian.org/debian unstable/main arm64 ldc arm64 1:1.40.0-5 [3647 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 default-d-compiler arm64 0.6.10 [2788 B] Get: 55 http://deb.debian.org/debian unstable/main arm64 dh-dlang all 0.6.10 [5088 B] Get: 56 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 59 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libgssrpc4t64 arm64 1.21.3-5 [57.2 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libkadm5clnt-mit12 arm64 1.21.3-5 [41.1 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libkdb5-10t64 arm64 1.21.3-5 [41.3 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libkadm5srv-mit12 arm64 1.21.3-5 [53.0 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 krb5-multidev arm64 1.21.3-5 [126 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libbrotli-dev arm64 1.1.0-2+b7 [308 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-2 [107 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-2 [179 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1.1 [71.4 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.8.0-1 [63.2 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.11.0-1 [121 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.11.0-1 [28.2 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.13.0-3 [342 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libunbound8 arm64 1.22.0-1+b1 [553 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libgnutls-dane0t64 arm64 3.8.9-2 [452 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libgnutls-openssl27t64 arm64 3.8.9-2 [452 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libidn2-dev arm64 2.3.8-2 [101 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libp11-kit-dev arm64 0.25.5-3 [208 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libtasn1-6-dev arm64 4.20.0-2 [96.7 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-3 [329 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-3 [621 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 nettle-dev arm64 3.10.1-1 [1325 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libgnutls28-dev arm64 3.8.9-2 [1419 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libkrb5-dev arm64 1.21.3-5 [16.1 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 libldap-dev arm64 2.6.9+dfsg-2 [305 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libnghttp2-dev arm64 1.64.0-1.1 [112 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 libnghttp3-dev arm64 1.8.0-1 [89.4 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.11.0-1 [33.9 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 libngtcp2-dev arm64 1.11.0-1 [174 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b5 [67.5 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libssl-dev arm64 3.5.0-1 [3383 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libzstd-dev arm64 1.5.7+dfsg-1 [335 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libcurl4-gnutls-dev arm64 8.13.0-3 [474 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libdeflate-dev arm64 1.23-2 [51.3 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libhtscodecs2 arm64 1.6.1-2 [74.7 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 libhts3t64 arm64 1.21+ds-1 [426 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 liblzma-dev arm64 5.8.1-1 [344 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 libhts-dev arm64 1.21+ds-1 [1658 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 libxxhash-dev arm64 0.8.3-2 [82.6 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 liblz4-dev arm64 1.10.0-4 [85.1 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 ninja-build arm64 1.12.1-1+b1 [130 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.13.2-1 [90.5 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 125 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 78.1.0-1.2 [224 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 78.1.0-1.2 [738 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 meson all 1.7.0-1 [639 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 shunit2 all 2.1.8-4 [33.9 kB] Fetched 80.5 MB in 1s (82.7 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.3-2_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.3-2) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.7.1-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/sambamba-1.0.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../sambamba_1.0.1+dfsg-2_source.changes dpkg-buildpackage: info: source package sambamba dpkg-buildpackage: info: source version 1.0.1+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean mkdir -p obj-aarch64-linux-gnu dh clean --buildsystem=meson debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/sambamba-1.0.1+dfsg' dh_auto_clean rm -rf /build/reproducible-path/sambamba-1.0.1+dfsg/output/ rm -f test.log make[1]: Leaving directory '/build/reproducible-path/sambamba-1.0.1+dfsg' dh_autoreconf_clean -O--buildsystem=meson dh_clean -O--buildsystem=meson debian/rules binary mkdir -p obj-aarch64-linux-gnu dh binary --buildsystem=meson dh_update_autotools_config -O--buildsystem=meson dh_autoreconf -O--buildsystem=meson debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/sambamba-1.0.1+dfsg' dh_auto_configure -- -Doptimize_strong=true -Dcpp_link_args="-wi -L=-z -L=relro /usr/lib/x86_64-linux-gnu/libhts.a -L=-lz -L=-lcrypto -L=-lcurl -L=-llzma -L=-lbz2 -L=-ldeflate -L=-llz4" cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 meson setup .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/aarch64-linux-gnu -Dpython.bytecompile=-1 -Doptimize_strong=true "-Dcpp_link_args=-wi -L=-z -L=relro /usr/lib/x86_64-linux-gnu/libhts.a -L=-lz -L=-lcrypto -L=-lcurl -L=-llzma -L=-lbz2 -L=-ldeflate -L=-llz4" The Meson build system Version: 1.7.0 Source dir: /build/reproducible-path/sambamba-1.0.1+dfsg Build dir: /build/reproducible-path/sambamba-1.0.1+dfsg/obj-aarch64-linux-gnu Build type: native build Project name: Sambamba Project version: 1.0.1 C compiler for the host machine: cc (gcc 14.2.0 "cc (Debian 14.2.0-19) 14.2.0") C linker for the host machine: cc ld.bfd 2.44 D compiler for the host machine: ldc2 (llvm 1.40.0 "LDC - the LLVM D compiler (1.40.0):") D linker for the host machine: ldc2 ld.bfd 2.44 Host machine cpu family: aarch64 Host machine cpu: aarch64 ../meson.build:18: WARNING: Project does not target a minimum version but uses feature deprecated since '0.56.0': meson.source_root. use meson.project_source_root() or meson.global_source_root() instead. ../meson.build:19: WARNING: Project does not target a minimum version but uses feature deprecated since '0.56.0': meson.build_root. use meson.project_build_root() or meson.global_build_root() instead. Found pkg-config: YES (/usr/bin/pkg-config) 1.8.1 Run-time dependency liblz4 found: YES 1.10.0 Run-time dependency zlib found: YES 1.3.1 Program ldc2 found: YES (/usr/bin/ldc2) Program mkdir found: YES (/usr/bin/mkdir) ../meson.build:220: WARNING: Project does not target a minimum version but uses feature deprecated since '0.55.0': ExternalProgram.path. use ExternalProgram.full_path() instead WARNING: You should add the boolean check kwarg to the run_command call. It currently defaults to false, but it will default to true in meson 2.0. See also: https://github.com/mesonbuild/meson/issues/9300 ../meson.build:227: WARNING: Project does not target a minimum version but uses feature deprecated since '0.55.0': ExternalProgram.path. use ExternalProgram.full_path() instead Program /build/reproducible-path/sambamba-1.0.1+dfsg/test/test_suite.sh found: YES (/build/reproducible-path/sambamba-1.0.1+dfsg/test/test_suite.sh) Build targets in project: 1 WARNING: Deprecated features used: * 0.55.0: {'ExternalProgram.path'} * 0.56.0: {'meson.build_root', 'meson.source_root'} Sambamba 1.0.1 User defined options buildtype : plain cpp_link_args : -wi -L=-z -L=relro /usr/lib/x86_64-linux-gnu/libhts.a -L=-lz -L=-lcrypto -L=-lcurl -L=-llzma -L=-lbz2 -L=-ldeflate -L=-llz4 libdir : lib/aarch64-linux-gnu localstatedir : /var optimize_strong : true prefix : /usr python.bytecompile: -1 sysconfdir : /etc wrap_mode : nodownload Found ninja-1.12.1 at /usr/bin/ninja make[1]: Leaving directory '/build/reproducible-path/sambamba-1.0.1+dfsg' dh_auto_build -O--buildsystem=meson cd obj-aarch64-linux-gnu && LC_ALL=C.UTF-8 ninja -j12 -v [1/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_main.d.o.deps -of=sambamba.p/sambamba_main.d.o -c ../sambamba/main.d [2/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_index.d.o.deps -of=sambamba.p/sambamba_index.d.o -c ../sambamba/index.d [3/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_file.d.o.deps -of=sambamba.p/sambamba_utils_common_file.d.o -c ../sambamba/utils/common/file.d [4/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_markdup2.d.o.deps -of=sambamba.p/sambamba_markdup2.d.o -c ../sambamba/markdup2.d [5/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_intervaltree.d.o.deps -of=sambamba.p/sambamba_utils_common_intervaltree.d.o -c ../sambamba/utils/common/intervaltree.d [6/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_fixbins.d.o.deps -of=sambamba.p/sambamba_fixbins.d.o -c ../sambamba/fixbins.d [7/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_overwrite.d.o.deps -of=sambamba.p/sambamba_utils_common_overwrite.d.o -c ../sambamba/utils/common/overwrite.d [8/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_pratt_parser.d.o.deps -of=sambamba.p/sambamba_utils_common_pratt_parser.d.o -c ../sambamba/utils/common/pratt_parser.d [9/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_ldc_gc_workaround.d.o.deps -of=sambamba.p/sambamba_utils_common_ldc_gc_workaround.d.o -c ../sambamba/utils/common/ldc_gc_workaround.d [10/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_subsample.d.o.deps -of=sambamba.p/sambamba_subsample.d.o -c ../sambamba/subsample.d [11/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_readstorage.d.o.deps -of=sambamba.p/sambamba_utils_common_readstorage.d.o -c ../sambamba/utils/common/readstorage.d [12/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_bed.d.o.deps -of=sambamba.p/sambamba_utils_common_bed.d.o -c ../sambamba/utils/common/bed.d [13/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_flagstat.d.o.deps -of=sambamba.p/sambamba_flagstat.d.o -c ../sambamba/flagstat.d [14/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_slice.d.o.deps -of=sambamba.p/sambamba_slice.d.o -c ../sambamba/slice.d [15/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release 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-I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_validate.d.o.deps -of=sambamba.p/sambamba_validate.d.o -c ../sambamba/validate.d [19/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_chunk.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_chunk.d.o -c ../BioD/bio/core/bgzf/chunk.d [20/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_block.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_block.d.o -c ../BioD/bio/core/bgzf/block.d [21/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_progressbar.d.o.deps -of=sambamba.p/sambamba_utils_common_progressbar.d.o -c ../sambamba/utils/common/progressbar.d [22/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_constants.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_constants.d.o -c ../BioD/bio/core/bgzf/constants.d [23/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_compress.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_compress.d.o -c 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-of=sambamba.p/BioD_bio_core_bgzf_outputstream.d.o -c ../BioD/bio/core/bgzf/outputstream.d [27/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_genotype.d.o.deps -of=sambamba.p/BioD_bio_core_genotype.d.o -c ../BioD/bio/core/genotype.d [28/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_decompress.d.o.deps -of=sambamba.p/BioD_bio_core_decompress.d.o -c ../BioD/bio/core/decompress.d [29/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_kmer.d.o.deps -of=sambamba.p/BioD_bio_core_kmer.d.o -c ../BioD/bio/core/kmer.d [30/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_region.d.o.deps -of=sambamba.p/BioD_bio_core_region.d.o -c ../BioD/bio/core/region.d [31/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_inputstream.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_inputstream.d.o -c ../BioD/bio/core/bgzf/inputstream.d [32/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_tinymap.d.o.deps -of=sambamba.p/BioD_bio_core_tinymap.d.o -c ../BioD/bio/core/tinymap.d [33/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_algo.d.o.deps -of=sambamba.p/BioD_bio_core_utils_algo.d.o -c ../BioD/bio/core/utils/algo.d [34/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_sequence.d.o.deps -of=sambamba.p/BioD_bio_core_sequence.d.o -c ../BioD/bio/core/sequence.d [35/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_exception.d.o.deps -of=sambamba.p/BioD_bio_core_utils_exception.d.o -c ../BioD/bio/core/utils/exception.d [36/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_memoize.d.o.deps -of=sambamba.p/BioD_bio_core_utils_memoize.d.o -c ../BioD/bio/core/utils/memoize.d [37/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_format.d.o.deps -of=sambamba.p/BioD_bio_core_utils_format.d.o -c ../BioD/bio/core/utils/format.d [38/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining 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-of=sambamba.p/BioD_bio_std_experimental_hts_pileup.d.o -c ../BioD/bio/std/experimental/hts/pileup.d [55/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_unpack.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_unpack.d.o -c ../BioD/bio/std/experimental/hts/unpack.d [56/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_sort.d.o.deps -of=sambamba.p/sambamba_sort.d.o -c ../sambamba/sort.d [57/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD 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-enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_abstractreader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_abstractreader.d.o -c ../BioD/bio/std/hts/bam/abstractreader.d [61/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_bai_bin.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_bai_bin.d.o -c ../BioD/bio/std/hts/bam/bai/bin.d [62/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_baifile.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_baifile.d.o -c ../BioD/bio/std/hts/bam/baifile.d [63/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_filtering.d.o.deps -of=sambamba.p/sambamba_utils_common_filtering.d.o -c ../sambamba/utils/common/filtering.d [64/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bgzf.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bgzf.d.o -c ../BioD/bio/std/experimental/hts/bgzf.d ../BioD/bio/std/experimental/hts/bgzf.d(91): Deprecation: package bio.core.utils is not accessible here, perhaps add 'static import bio.core.utils;' ../BioD/bio/std/experimental/hts/bgzf.d(91): Deprecation: module bio.core.utils.zlib is not accessible here, perhaps add 'static import bio.core.utils.zlib;' [65/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_baseinfo.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_baseinfo.d.o -c ../BioD/bio/std/hts/bam/baseinfo.d [66/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_constants.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_constants.d.o -c ../BioD/bio/std/hts/bam/constants.d [67/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_core.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_core.d.o -c ../BioD/bio/std/hts/bam/md/core.d [68/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_cigar.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_cigar.d.o -c ../BioD/bio/std/hts/bam/cigar.d [69/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bam_reader.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bam_reader.d.o -c ../BioD/bio/std/experimental/hts/bam/reader.d [70/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_parse.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_parse.d.o -c ../BioD/bio/std/hts/bam/md/parse.d [71/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_reconstruct.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_reconstruct.d.o -c ../BioD/bio/std/hts/bam/md/reconstruct.d [72/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_file_fai.d.o.deps -of=sambamba.p/BioD_bio_std_file_fai.d.o -c ../BioD/bio/std/file/fai.d [73/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_file_fasta.d.o.deps -of=sambamba.p/BioD_bio_std_file_fasta.d.o -c ../BioD/bio/std/file/fasta.d [74/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_pileup.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_pileup.d.o -c ../BioD/bio/std/hts/bam/pileup.d [75/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_view.d.o.deps -of=sambamba.p/sambamba_view.d.o -c ../sambamba/view.d [76/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD 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-J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_region.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_region.d.o -c ../BioD/bio/std/hts/bam/region.d [80/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_randomaccessmanager.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_randomaccessmanager.d.o -c ../BioD/bio/std/hts/bam/randomaccessmanager.d [81/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_splitter.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_splitter.d.o -c ../BioD/bio/std/hts/bam/splitter.d [82/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi 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-I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_validation_samheader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_validation_samheader.d.o -c ../BioD/bio/std/hts/bam/validation/samheader.d [86/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_iontorrent_flowindex.d.o.deps -of=sambamba.p/BioD_bio_std_hts_iontorrent_flowindex.d.o -c ../BioD/bio/std/hts/iontorrent/flowindex.d [87/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_genotype_snp.d.o.deps 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-makedeps=sambamba.p/BioD_bio_std_hts_iontorrent_flowcall.d.o.deps -of=sambamba.p/BioD_bio_std_hts_iontorrent_flowcall.d.o -c ../BioD/bio/std/hts/iontorrent/flowcall.d [91/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_queryparser.d.o.deps -of=sambamba.p/sambamba_utils_common_queryparser.d.o -c ../sambamba/utils/common/queryparser.d [92/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_snpcallers_maq.d.o.deps -of=sambamba.p/BioD_bio_std_hts_snpcallers_maq.d.o -c ../BioD/bio/std/hts/snpcallers/maq.d [93/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g 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-I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_sam_utils_recordparser.d.o.deps -of=sambamba.p/BioD_bio_std_hts_sam_utils_recordparser.d.o -c ../BioD/bio/std/hts/sam/utils/recordparser.d [97/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_utils_graph.d.o.deps -of=sambamba.p/BioD_bio_std_hts_utils_graph.d.o -c ../BioD/bio/std/hts/utils/graph.d [98/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_maf_block.d.o.deps -of=sambamba.p/BioD_bio_std_maf_block.d.o -c ../BioD/bio/std/maf/block.d [99/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_reader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_reader.d.o -c ../BioD/bio/std/hts/bam/reader.d [100/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_range_splitter.d.o.deps -of=sambamba.p/BioD_bio_std_range_splitter.d.o -c ../BioD/bio/std/range/splitter.d [101/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_constants.d.o.deps -of=sambamba.p/BioD_bio_std_sff_constants.d.o -c ../BioD/bio/std/sff/constants.d [102/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_index.d.o.deps -of=sambamba.p/BioD_bio_std_sff_index.d.o -c ../BioD/bio/std/sff/index.d [103/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_read.d.o.deps -of=sambamba.p/BioD_bio_std_sff_read.d.o -c ../BioD/bio/std/sff/read.d [104/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_utils_value.d.o.deps -of=sambamba.p/BioD_bio_std_hts_utils_value.d.o -c ../BioD/bio/std/hts/utils/value.d [105/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_maf_parser.d.o.deps -of=sambamba.p/BioD_bio_std_maf_parser.d.o -c ../BioD/bio/std/maf/parser.d [106/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_utils_roundup.d.o.deps -of=sambamba.p/BioD_bio_std_sff_utils_roundup.d.o -c ../BioD/bio/std/sff/utils/roundup.d [107/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_maf_reader.d.o.deps -of=sambamba.p/BioD_bio_std_maf_reader.d.o -c ../BioD/bio/std/maf/reader.d [108/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_readrange.d.o.deps -of=sambamba.p/BioD_bio_std_sff_readrange.d.o -c ../BioD/bio/std/sff/readrange.d [109/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_writer.d.o.deps -of=sambamba.p/BioD_bio_std_sff_writer.d.o -c ../BioD/bio/std/sff/writer.d [110/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_doformat.d.o.deps -of=sambamba.p/BioD_contrib_undead_doformat.d.o -c ../BioD/contrib/undead/doformat.d ../BioD/contrib/undead/doformat.d(128): Deprecation: use of imaginary type `ifloat` is deprecated, use `float` instead ../BioD/contrib/undead/doformat.d(129): Deprecation: use of imaginary type `idouble` is deprecated, use `double` instead ../BioD/contrib/undead/doformat.d(130): Deprecation: use of imaginary type `ireal` is deprecated, use `real` instead ../BioD/contrib/undead/doformat.d(131): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/doformat.d(132): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/doformat.d(133): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead [111/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_reader.d.o.deps -of=sambamba.p/BioD_bio_std_sff_reader.d.o -c ../BioD/bio/std/sff/reader.d [112/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_utf.d.o.deps -of=sambamba.p/BioD_contrib_undead_utf.d.o -c ../BioD/contrib/undead/utf.d [113/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_cstream.d.o.deps -of=sambamba.p/BioD_contrib_undead_cstream.d.o -c ../BioD/contrib/undead/cstream.d [114/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_internal_file.d.o.deps -of=sambamba.p/BioD_contrib_undead_internal_file.d.o -c ../BioD/contrib/undead/internal/file.d [115/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/utils_lz4.d.o.deps -of=sambamba.p/utils_lz4.d.o -c ../utils/lz4.d [116/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_sam_utils_fastrecordparser.d.o.deps -of=sambamba.p/BioD_bio_std_hts_sam_utils_fastrecordparser.d.o -c ../BioD/bio/std/hts/sam/utils/fastrecordparser.d [117/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_tagvalue.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_tagvalue.d.o -c ../BioD/bio/std/hts/bam/tagvalue.d [118/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/thirdparty_mergesort.d.o.deps -of=sambamba.p/thirdparty_mergesort.d.o -c ../thirdparty/mergesort.d [119/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/utils_version_.d.o.deps -of=sambamba.p/utils_version_.d.o -c ../utils/version_.d [120/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/thirdparty_unstablesort.d.o.deps -of=sambamba.p/thirdparty_unstablesort.d.o -c ../thirdparty/unstablesort.d [121/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_attribute.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_attribute.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/attribute.d [122/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_common.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_common.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/common.d [123/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/utils_strip_bcf_header.d.o.deps -of=sambamba.p/utils_strip_bcf_header.d.o -c ../utils/strip_bcf_header.d [124/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_package.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_package.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/package.d [125/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_exception.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_exception.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/exception.d [126/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_register.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_register.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/register.d [127/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_buffer.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_buffer.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/buffer.d [128/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/_build_reproducible-path_sambamba-1.0.1+dfsg_obj-aarch64-linux-gnu_utils_ldc_version_info_.d.o.deps -of=sambamba.p/_build_reproducible-path_sambamba-1.0.1+dfsg_obj-aarch64-linux-gnu_utils_ldc_version_info_.d.o -c /build/reproducible-path/sambamba-1.0.1+dfsg/obj-aarch64-linux-gnu/utils/ldc_version_info_.d [129/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_validation_alignment.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_validation_alignment.d.o -c ../BioD/bio/std/hts/bam/validation/alignment.d [130/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_value.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_value.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/value.d [131/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_packer.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_packer.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/packer.d [132/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_streaming_unpacker.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_streaming_unpacker.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/streaming_unpacker.d [133/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_read.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_read.d.o -c ../BioD/bio/std/hts/bam/read.d [134/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_sam_header.d.o.deps -of=sambamba.p/BioD_bio_std_hts_sam_header.d.o -c ../BioD/bio/std/hts/sam/header.d [135/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_multireader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_multireader.d.o -c ../BioD/bio/std/hts/bam/multireader.d [136/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_utils_samheadermerger.d.o.deps -of=sambamba.p/BioD_bio_std_hts_utils_samheadermerger.d.o -c ../BioD/bio/std/hts/utils/samheadermerger.d [137/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_stream.d.o.deps -of=sambamba.p/BioD_contrib_undead_stream.d.o -c ../BioD/contrib/undead/stream.d ../BioD/contrib/undead/stream.d(450): Deprecation: use of imaginary type `ifloat` is deprecated, use `float` instead ../BioD/contrib/undead/stream.d(451): Deprecation: use of imaginary type `idouble` is deprecated, use `double` instead ../BioD/contrib/undead/stream.d(452): Deprecation: use of imaginary type `ireal` is deprecated, use `real` instead ../BioD/contrib/undead/stream.d(453): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/stream.d(454): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/stream.d(455): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/stream.d(1116): Deprecation: use of imaginary type `ifloat` is deprecated, use `float` instead ../BioD/contrib/undead/stream.d(1117): Deprecation: use of imaginary type `idouble` is deprecated, use `double` instead ../BioD/contrib/undead/stream.d(1118): Deprecation: use of imaginary type `ireal` is deprecated, use `real` instead ../BioD/contrib/undead/stream.d(1119): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/stream.d(1120): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/stream.d(1121): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/doformat.d(494): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/doformat.d(449): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/doformat.d(447): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/doformat.d(449): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/doformat.d(447): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/doformat.d(449): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/doformat.d(447): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/stream.d(2472): Deprecation: use of imaginary type `ifloat` is deprecated, use `float` instead 11 deprecation warnings omitted, use `-verrors=0` to show all [138/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_pileup.d.o.deps -of=sambamba.p/sambamba_pileup.d.o -c ../sambamba/pileup.d [139/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_unpacker.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_unpacker.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/unpacker.d [140/140] ldc2 -of=sambamba sambamba.p/sambamba_main.d.o sambamba.p/sambamba_depth.d.o sambamba.p/sambamba_fixbins.d.o sambamba.p/sambamba_flagstat.d.o sambamba.p/sambamba_index.d.o sambamba.p/sambamba_markdup2.d.o sambamba.p/sambamba_markdup.d.o sambamba.p/sambamba_merge.d.o sambamba.p/sambamba_pileup.d.o sambamba.p/sambamba_slice.d.o sambamba.p/sambamba_sort.d.o sambamba.p/sambamba_subsample.d.o sambamba.p/sambamba_utils_common_bed.d.o sambamba.p/sambamba_utils_common_file.d.o sambamba.p/sambamba_utils_common_filtering.d.o sambamba.p/sambamba_utils_common_intervaltree.d.o sambamba.p/sambamba_utils_common_ldc_gc_workaround.d.o sambamba.p/sambamba_utils_common_overwrite.d.o sambamba.p/sambamba_utils_common_pratt_parser.d.o sambamba.p/sambamba_utils_common_progressbar.d.o sambamba.p/sambamba_utils_common_queryparser.d.o sambamba.p/sambamba_utils_common_readstorage.d.o sambamba.p/sambamba_utils_common_tmpdir.d.o sambamba.p/sambamba_utils_view_alignmentrangeprocessor.d.o sambamba.p/sambamba_utils_view_headerserializer.d.o sambamba.p/sambamba_validate.d.o sambamba.p/sambamba_view.d.o sambamba.p/BioD_bio_core_base.d.o sambamba.p/BioD_bio_core_bgzf_block.d.o sambamba.p/BioD_bio_core_bgzf_chunk.d.o sambamba.p/BioD_bio_core_bgzf_compress.d.o sambamba.p/BioD_bio_core_bgzf_constants.d.o sambamba.p/BioD_bio_core_bgzf_inputstream.d.o sambamba.p/BioD_bio_core_bgzf_outputstream.d.o sambamba.p/BioD_bio_core_bgzf_virtualoffset.d.o sambamba.p/BioD_bio_core_call.d.o sambamba.p/BioD_bio_core_decompress.d.o sambamba.p/BioD_bio_core_genotype.d.o sambamba.p/BioD_bio_core_kmer.d.o sambamba.p/BioD_bio_core_region.d.o sambamba.p/BioD_bio_core_sequence.d.o sambamba.p/BioD_bio_core_tinymap.d.o sambamba.p/BioD_bio_core_utils_algo.d.o sambamba.p/BioD_bio_core_utils_bylinefast.d.o sambamba.p/BioD_bio_core_utils_exception.d.o sambamba.p/BioD_bio_core_utils_format.d.o sambamba.p/BioD_bio_core_utils_memoize.d.o sambamba.p/BioD_bio_core_utils_outbuffer.d.o sambamba.p/BioD_bio_core_utils_range.d.o sambamba.p/BioD_bio_core_utils_roundbuf.d.o sambamba.p/BioD_bio_core_utils_stream.d.o sambamba.p/BioD_bio_core_utils_switchendianness.d.o sambamba.p/BioD_bio_core_utils_tmpfile.d.o sambamba.p/BioD_bio_core_utils_zlib.d.o sambamba.p/BioD_bio_std_experimental_hts_bam_header.d.o sambamba.p/BioD_bio_std_experimental_hts_bam_reader.d.o sambamba.p/BioD_bio_std_experimental_hts_bam_writer.d.o sambamba.p/BioD_bio_std_experimental_hts_bgzf.d.o sambamba.p/BioD_bio_std_experimental_hts_bgzf_writer.d.o sambamba.p/BioD_bio_std_experimental_hts_constants.d.o sambamba.p/BioD_bio_std_experimental_hts_hashing.d.o sambamba.p/BioD_bio_std_experimental_hts_logger.d.o sambamba.p/BioD_bio_std_experimental_hts_pileup.d.o sambamba.p/BioD_bio_std_experimental_hts_reads.d.o sambamba.p/BioD_bio_std_experimental_hts_unpack.d.o sambamba.p/BioD_bio_std_file_fai.d.o sambamba.p/BioD_bio_std_file_fasta.d.o sambamba.p/BioD_bio_std_file_fastq.d.o sambamba.p/BioD_bio_std_genotype_maf.d.o sambamba.p/BioD_bio_std_genotype_snp.d.o sambamba.p/BioD_bio_std_hts_bam_abstractreader.d.o sambamba.p/BioD_bio_std_hts_bam_bai_bin.d.o sambamba.p/BioD_bio_std_hts_bam_baifile.d.o sambamba.p/BioD_bio_std_hts_bam_bai_indexing.d.o sambamba.p/BioD_bio_std_hts_bam_baseinfo.d.o sambamba.p/BioD_bio_std_hts_bam_cigar.d.o sambamba.p/BioD_bio_std_hts_bam_constants.d.o sambamba.p/BioD_bio_std_hts_bam_md_core.d.o sambamba.p/BioD_bio_std_hts_bam_md_operation.d.o sambamba.p/BioD_bio_std_hts_bam_md_parse.d.o sambamba.p/BioD_bio_std_hts_bam_md_reconstruct.d.o sambamba.p/BioD_bio_std_hts_bam_multireader.d.o sambamba.p/BioD_bio_std_hts_bam_pileup.d.o sambamba.p/BioD_bio_std_hts_bam_randomaccessmanager.d.o sambamba.p/BioD_bio_std_hts_bam_read.d.o sambamba.p/BioD_bio_std_hts_bam_reader.d.o sambamba.p/BioD_bio_std_hts_bam_readrange.d.o sambamba.p/BioD_bio_std_hts_bam_reference.d.o sambamba.p/BioD_bio_std_hts_bam_referenceinfo.d.o sambamba.p/BioD_bio_std_hts_bam_region.d.o sambamba.p/BioD_bio_std_hts_bam_splitter.d.o sambamba.p/BioD_bio_std_hts_bam_tagvalue.d.o sambamba.p/BioD_bio_std_hts_bam_validation_alignment.d.o sambamba.p/BioD_bio_std_hts_bam_validation_samheader.d.o sambamba.p/BioD_bio_std_hts_bam_writer.d.o sambamba.p/BioD_bio_std_hts_iontorrent_flowcall.d.o sambamba.p/BioD_bio_std_hts_iontorrent_flowindex.d.o sambamba.p/BioD_bio_std_hts_sam_header.d.o sambamba.p/BioD_bio_std_hts_sam_reader.d.o sambamba.p/BioD_bio_std_hts_sam_utils_fastrecordparser.d.o sambamba.p/BioD_bio_std_hts_sam_utils_recordparser.d.o sambamba.p/BioD_bio_std_hts_snpcallers_maq.d.o sambamba.p/BioD_bio_std_hts_snpcallers_simple.d.o sambamba.p/BioD_bio_std_hts_utils_array.d.o sambamba.p/BioD_bio_std_hts_utils_graph.d.o sambamba.p/BioD_bio_std_hts_utils_samheadermerger.d.o sambamba.p/BioD_bio_std_hts_utils_value.d.o sambamba.p/BioD_bio_std_maf_block.d.o sambamba.p/BioD_bio_std_maf_parser.d.o sambamba.p/BioD_bio_std_maf_reader.d.o sambamba.p/BioD_bio_std_range_splitter.d.o sambamba.p/BioD_bio_std_sff_constants.d.o sambamba.p/BioD_bio_std_sff_index.d.o sambamba.p/BioD_bio_std_sff_read.d.o sambamba.p/BioD_bio_std_sff_reader.d.o sambamba.p/BioD_bio_std_sff_readrange.d.o sambamba.p/BioD_bio_std_sff_utils_roundup.d.o sambamba.p/BioD_bio_std_sff_writer.d.o sambamba.p/BioD_contrib_undead_cstream.d.o sambamba.p/BioD_contrib_undead_doformat.d.o sambamba.p/BioD_contrib_undead_internal_file.d.o sambamba.p/BioD_contrib_undead_stream.d.o sambamba.p/BioD_contrib_undead_utf.d.o sambamba.p/utils_lz4.d.o sambamba.p/utils_strip_bcf_header.d.o sambamba.p/utils_version_.d.o sambamba.p/thirdparty_mergesort.d.o sambamba.p/thirdparty_unstablesort.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_attribute.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_common.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_package.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_register.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_unpacker.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_buffer.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_exception.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_packer.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_streaming_unpacker.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_value.d.o sambamba.p/_build_reproducible-path_sambamba-1.0.1+dfsg_obj-aarch64-linux-gnu_utils_ldc_version_info_.d.o -L=-flto=full -L=-rpath -L=/usr/lib/aarch64-linux-gnu -L=-rpath-link -L=/usr/lib/aarch64-linux-gnu -L=--allow-shlib-undefined -link-defaultlib-shared -L=-z -L=relro -release -wi -g -O2 /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblz4.so /usr/lib/aarch64-linux-gnu/libxxhash.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/sambamba-1.0.1+dfsg' echo "FIXME: Build time tests needs fixing" FIXME: Build time tests needs fixing make[1]: Leaving directory '/build/reproducible-path/sambamba-1.0.1+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=meson dh_prep -O--buildsystem=meson dh_auto_install --destdir=debian/sambamba/ -O--buildsystem=meson cd obj-aarch64-linux-gnu && DESTDIR=/build/reproducible-path/sambamba-1.0.1\+dfsg/debian/sambamba LC_ALL=C.UTF-8 ninja install [0/1] Installing files Installing sambamba to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/bin Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba-flagstat.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba-index.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba-markdup.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba-merge.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba-pileup.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba-slice.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba-sort.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba-view.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/etc/bash_completion.d/sambamba to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/bash-completion/completions dh_installdocs -O--buildsystem=meson dh_installchangelogs -O--buildsystem=meson dh_installman -O--buildsystem=meson dh_installsystemduser -O--buildsystem=meson dh_perl -O--buildsystem=meson dh_link -O--buildsystem=meson dh_strip_nondeterminism -O--buildsystem=meson dh_compress -O--buildsystem=meson dh_fixperms -O--buildsystem=meson debian/rules override_dh_missing make[1]: Entering directory '/build/reproducible-path/sambamba-1.0.1+dfsg' dh_missing --fail-missing make[1]: Leaving directory '/build/reproducible-path/sambamba-1.0.1+dfsg' dh_dwz -a -O--buildsystem=meson dh_strip -a -O--buildsystem=meson dh_makeshlibs -a -O--buildsystem=meson dh_shlibdeps -a -O--buildsystem=meson dh_installdeb -O--buildsystem=meson dh_gencontrol -O--buildsystem=meson dh_md5sums -O--buildsystem=meson dh_builddeb -O--buildsystem=meson dpkg-deb: building package 'sambamba' in '../sambamba_1.0.1+dfsg-2_arm64.deb'. dpkg-deb: building package 'sambamba-dbgsym' in '../sambamba-dbgsym_1.0.1+dfsg-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../sambamba_1.0.1+dfsg-2_arm64.buildinfo dpkg-genchanges --build=binary -O../sambamba_1.0.1+dfsg-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1704919 and its subdirectories I: Current time: Mon May 25 08:19:46 -12 2026 I: pbuilder-time-stamp: 1779740386 Tue Apr 22 13:56:48 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Tue Apr 22 13:56:48 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Tue Apr 22 13:56:48 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Tue Apr 22 13:56:48 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-HvRGdB' ==================================================================================== Tue Apr 22 13:56:49 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "2 sambamba unstable /srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo 1.0.1+dfsg-2" as arguments. Tue Apr 22 13:56:49 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-lhP62aZI" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Tue Apr 22 13:56:49 UTC 2025 I: Downloading source for unstable/sambamba=1.0.1+dfsg-2 Reading package lists... NOTICE: 'sambamba' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/sambamba.git Please use: git clone https://salsa.debian.org/med-team/sambamba.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 573 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main sambamba 1.0.1+dfsg-2 (dsc) [2276 B] Get:2 http://deb.debian.org/debian unstable/main sambamba 1.0.1+dfsg-2 (tar) [563 kB] Get:3 http://deb.debian.org/debian unstable/main sambamba 1.0.1+dfsg-2 (diff) [6928 B] Fetched 573 kB in 0s (30.4 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'sambamba' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/sambamba.git Please use: git clone https://salsa.debian.org/med-team/sambamba.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 573 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main sambamba 1.0.1+dfsg-2 (dsc) [2276 B] Get:2 http://deb.debian.org/debian unstable/main sambamba 1.0.1+dfsg-2 (tar) [563 kB] Get:3 http://deb.debian.org/debian unstable/main sambamba 1.0.1+dfsg-2 (diff) [6928 B] Fetched 573 kB in 0s (30.4 MB/s) Download complete and in download only mode ============================================================================= Re-Building sambamba in unstable on arm64 on codethink04-arm64 now. Date: Tue Apr 22 14:56:50 BST 2025 Date UTC: Tue Apr 22 13:56:50 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo/pbuilderrc_CdYA + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' sambamba = debian-installer -o sambamba = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' sambamba = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo/pbuilderrc_CdYA --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo/b2 --logfile b2/build.log sambamba_1.0.1+dfsg-2.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Apr 23 03:56:50 +14 2025 I: pbuilder-time-stamp: 1745330210 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [sambamba_1.0.1+dfsg-2.dsc] I: copying [./sambamba_1.0.1+dfsg.orig.tar.xz] I: copying [./sambamba_1.0.1+dfsg-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./sambamba_1.0.1+dfsg-2.dsc: unsupported subcommand dpkg-source: info: extracting sambamba in sambamba-1.0.1+dfsg dpkg-source: info: unpacking sambamba_1.0.1+dfsg.orig.tar.xz dpkg-source: info: unpacking sambamba_1.0.1+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 2to3.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3936800/tmp/hooks/D01_modify_environment starting debug: Running on codethink04-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Apr 22 13:56 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3936800/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3936800/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=d885fe1fcc2f4751964e8d333f2abd34 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3936800 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo/pbuilderrc_CdYA --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo/b2 --logfile b2/build.log sambamba_1.0.1+dfsg-2.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3936800/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), architecture-is-64-bit, architecture-is-little-endian, dh-dlang, libhts-dev, meson, pkgconf, python3, shunit2, zlib1g-dev, ldc, liblz4-dev, libcurl4-gnutls-dev | libcurl-dev, libssl-dev, libbz2-dev, libdeflate-dev, liblzma-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-little-endian; however: Package architecture-is-little-endian is not installed. pbuilder-satisfydepends-dummy depends on dh-dlang; however: Package dh-dlang is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on meson; however: Package meson is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on shunit2; however: Package shunit2 is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on ldc; however: Package ldc is not installed. pbuilder-satisfydepends-dummy depends on liblz4-dev; however: Package liblz4-dev is not installed. pbuilder-satisfydepends-dummy depends on libcurl4-gnutls-dev | libcurl-dev; however: Package libcurl4-gnutls-dev is not installed. Package libcurl-dev is not installed. pbuilder-satisfydepends-dummy depends on libssl-dev; however: Package libssl-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libdeflate-dev; however: Package libdeflate-dev is not installed. pbuilder-satisfydepends-dummy depends on liblzma-dev; however: Package liblzma-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} debhelper{a} default-d-compiler{a} dh-autoreconf{a} dh-dlang{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} krb5-multidev{a} ldc{a} libarchive-zip-perl{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libedit2{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} libllvm19{a} liblz4-dev{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libphobos2-ldc-shared-dev{a} libphobos2-ldc-shared110{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2{a} libxxhash-dev{a} libz3-4{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} meson{a} netbase{a} nettle-dev{a} ninja-build{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} shunit2{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lld llvm-19-linker-tools lynx publicsuffix wget 0 packages upgraded, 131 newly installed, 0 to remove and 0 not upgraded. Need to get 80.5 MB of archives. After unpacking 383 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.3-2 [855 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.7.1-1 [93.3 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.3-2 [1998 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.3-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025b-2 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.3-2 [1890 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.3-2 [751 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.3-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.3-1 [28.2 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41-4 [93.9 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 architecture-properties arm64 0.2.6 [2336 B] Get: 26 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1+b1 [24.2 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 comerr-dev arm64 2.1-1.47.2-1+b1 [56.2 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 39 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.4 [629 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libphobos2-ldc-shared110 arm64 1:1.40.0-5 [1085 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libphobos2-ldc-shared-dev arm64 1:1.40.0-5 [6023 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libedit2 arm64 3.1-20250104-1 [89.3 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libz3-4 arm64 4.13.3-1 [7507 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libllvm19 arm64 1:19.1.7-3 [23.3 MB] Get: 53 http://deb.debian.org/debian unstable/main arm64 ldc arm64 1:1.40.0-5 [3647 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 default-d-compiler arm64 0.6.10 [2788 B] Get: 55 http://deb.debian.org/debian unstable/main arm64 dh-dlang all 0.6.10 [5088 B] Get: 56 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 59 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libgssrpc4t64 arm64 1.21.3-5 [57.2 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libkadm5clnt-mit12 arm64 1.21.3-5 [41.1 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libkdb5-10t64 arm64 1.21.3-5 [41.3 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libkadm5srv-mit12 arm64 1.21.3-5 [53.0 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 krb5-multidev arm64 1.21.3-5 [126 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libbrotli-dev arm64 1.1.0-2+b7 [308 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-2 [107 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-2 [179 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1.1 [71.4 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.8.0-1 [63.2 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.11.0-1 [121 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.11.0-1 [28.2 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.13.0-3 [342 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libunbound8 arm64 1.22.0-1+b1 [553 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libgnutls-dane0t64 arm64 3.8.9-2 [452 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libgnutls-openssl27t64 arm64 3.8.9-2 [452 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libidn2-dev arm64 2.3.8-2 [101 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libp11-kit-dev arm64 0.25.5-3 [208 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libtasn1-6-dev arm64 4.20.0-2 [96.7 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-3 [329 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-3 [621 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 nettle-dev arm64 3.10.1-1 [1325 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libgnutls28-dev arm64 3.8.9-2 [1419 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libkrb5-dev arm64 1.21.3-5 [16.1 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 libldap-dev arm64 2.6.9+dfsg-2 [305 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libnghttp2-dev arm64 1.64.0-1.1 [112 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 libnghttp3-dev arm64 1.8.0-1 [89.4 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.11.0-1 [33.9 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 libngtcp2-dev arm64 1.11.0-1 [174 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b5 [67.5 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libssl-dev arm64 3.5.0-1 [3383 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libzstd-dev arm64 1.5.7+dfsg-1 [335 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libcurl4-gnutls-dev arm64 8.13.0-3 [474 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libdeflate-dev arm64 1.23-2 [51.3 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libhtscodecs2 arm64 1.6.1-2 [74.7 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 libhts3t64 arm64 1.21+ds-1 [426 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 liblzma-dev arm64 5.8.1-1 [344 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 libhts-dev arm64 1.21+ds-1 [1658 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 libxxhash-dev arm64 0.8.3-2 [82.6 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 liblz4-dev arm64 1.10.0-4 [85.1 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 ninja-build arm64 1.12.1-1+b1 [130 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.13.2-1 [90.5 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 125 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 78.1.0-1.2 [224 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 78.1.0-1.2 [738 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 meson all 1.7.0-1 [639 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 shunit2 all 2.1.8-4 [33.9 kB] Fetched 80.5 MB in 1s (128 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.3-2_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.3-2) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.7.1-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-1) ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.3-2_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.3-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.3-2_arm64.deb ... Unpacking python3.13 (3.13.3-2) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3936800/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/3936800/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/sambamba-1.0.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../sambamba_1.0.1+dfsg-2_source.changes dpkg-buildpackage: info: source package sambamba dpkg-buildpackage: info: source version 1.0.1+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean mkdir -p obj-aarch64-linux-gnu dh clean --buildsystem=meson debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/sambamba-1.0.1+dfsg' dh_auto_clean rm -rf /build/reproducible-path/sambamba-1.0.1+dfsg/output/ rm -f test.log make[1]: Leaving directory '/build/reproducible-path/sambamba-1.0.1+dfsg' dh_autoreconf_clean -O--buildsystem=meson dh_clean -O--buildsystem=meson debian/rules binary mkdir -p obj-aarch64-linux-gnu dh binary --buildsystem=meson dh_update_autotools_config -O--buildsystem=meson dh_autoreconf -O--buildsystem=meson debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/sambamba-1.0.1+dfsg' dh_auto_configure -- -Doptimize_strong=true -Dcpp_link_args="-wi -L=-z -L=relro /usr/lib/x86_64-linux-gnu/libhts.a -L=-lz -L=-lcrypto -L=-lcurl -L=-llzma -L=-lbz2 -L=-ldeflate -L=-llz4" cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 meson setup .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/aarch64-linux-gnu -Dpython.bytecompile=-1 -Doptimize_strong=true "-Dcpp_link_args=-wi -L=-z -L=relro /usr/lib/x86_64-linux-gnu/libhts.a -L=-lz -L=-lcrypto -L=-lcurl -L=-llzma -L=-lbz2 -L=-ldeflate -L=-llz4" The Meson build system Version: 1.7.0 Source dir: /build/reproducible-path/sambamba-1.0.1+dfsg Build dir: /build/reproducible-path/sambamba-1.0.1+dfsg/obj-aarch64-linux-gnu Build type: native build Project name: Sambamba Project version: 1.0.1 C compiler for the host machine: cc (gcc 14.2.0 "cc (Debian 14.2.0-19) 14.2.0") C linker for the host machine: cc ld.bfd 2.44 D compiler for the host machine: ldc2 (llvm 1.40.0 "LDC - the LLVM D compiler (1.40.0):") D linker for the host machine: ldc2 ld.bfd 2.44 Host machine cpu family: aarch64 Host machine cpu: aarch64 ../meson.build:18: WARNING: Project does not target a minimum version but uses feature deprecated since '0.56.0': meson.source_root. use meson.project_source_root() or meson.global_source_root() instead. ../meson.build:19: WARNING: Project does not target a minimum version but uses feature deprecated since '0.56.0': meson.build_root. use meson.project_build_root() or meson.global_build_root() instead. Found pkg-config: YES (/usr/bin/pkg-config) 1.8.1 Run-time dependency liblz4 found: YES 1.10.0 Run-time dependency zlib found: YES 1.3.1 Program ldc2 found: YES (/usr/bin/ldc2) Program mkdir found: YES (/usr/bin/mkdir) ../meson.build:220: WARNING: Project does not target a minimum version but uses feature deprecated since '0.55.0': ExternalProgram.path. use ExternalProgram.full_path() instead WARNING: You should add the boolean check kwarg to the run_command call. It currently defaults to false, but it will default to true in meson 2.0. See also: https://github.com/mesonbuild/meson/issues/9300 ../meson.build:227: WARNING: Project does not target a minimum version but uses feature deprecated since '0.55.0': ExternalProgram.path. use ExternalProgram.full_path() instead Program /build/reproducible-path/sambamba-1.0.1+dfsg/test/test_suite.sh found: YES (/build/reproducible-path/sambamba-1.0.1+dfsg/test/test_suite.sh) Build targets in project: 1 WARNING: Deprecated features used: * 0.55.0: {'ExternalProgram.path'} * 0.56.0: {'meson.build_root', 'meson.source_root'} Sambamba 1.0.1 User defined options buildtype : plain cpp_link_args : -wi -L=-z -L=relro /usr/lib/x86_64-linux-gnu/libhts.a -L=-lz -L=-lcrypto -L=-lcurl -L=-llzma -L=-lbz2 -L=-ldeflate -L=-llz4 libdir : lib/aarch64-linux-gnu localstatedir : /var optimize_strong : true prefix : /usr python.bytecompile: -1 sysconfdir : /etc wrap_mode : nodownload Found ninja-1.12.1 at /usr/bin/ninja make[1]: Leaving directory '/build/reproducible-path/sambamba-1.0.1+dfsg' dh_auto_build -O--buildsystem=meson cd obj-aarch64-linux-gnu && LC_ALL=C.UTF-8 ninja -j12 -v [1/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_main.d.o.deps -of=sambamba.p/sambamba_main.d.o -c ../sambamba/main.d [2/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_markdup2.d.o.deps -of=sambamba.p/sambamba_markdup2.d.o -c ../sambamba/markdup2.d [3/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_index.d.o.deps -of=sambamba.p/sambamba_index.d.o -c ../sambamba/index.d [4/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_file.d.o.deps -of=sambamba.p/sambamba_utils_common_file.d.o -c ../sambamba/utils/common/file.d [5/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_intervaltree.d.o.deps -of=sambamba.p/sambamba_utils_common_intervaltree.d.o -c ../sambamba/utils/common/intervaltree.d [6/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_fixbins.d.o.deps -of=sambamba.p/sambamba_fixbins.d.o -c ../sambamba/fixbins.d [7/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_overwrite.d.o.deps -of=sambamba.p/sambamba_utils_common_overwrite.d.o -c ../sambamba/utils/common/overwrite.d [8/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_pratt_parser.d.o.deps -of=sambamba.p/sambamba_utils_common_pratt_parser.d.o -c ../sambamba/utils/common/pratt_parser.d [9/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_bed.d.o.deps -of=sambamba.p/sambamba_utils_common_bed.d.o -c ../sambamba/utils/common/bed.d [10/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_flagstat.d.o.deps -of=sambamba.p/sambamba_flagstat.d.o -c ../sambamba/flagstat.d [11/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_slice.d.o.deps -of=sambamba.p/sambamba_slice.d.o -c ../sambamba/slice.d [12/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_readstorage.d.o.deps -of=sambamba.p/sambamba_utils_common_readstorage.d.o -c ../sambamba/utils/common/readstorage.d [13/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_subsample.d.o.deps -of=sambamba.p/sambamba_subsample.d.o -c ../sambamba/subsample.d [14/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_view_alignmentrangeprocessor.d.o.deps -of=sambamba.p/sambamba_utils_view_alignmentrangeprocessor.d.o -c ../sambamba/utils/view/alignmentrangeprocessor.d [15/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_ldc_gc_workaround.d.o.deps -of=sambamba.p/sambamba_utils_common_ldc_gc_workaround.d.o -c ../sambamba/utils/common/ldc_gc_workaround.d [16/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_tmpdir.d.o.deps -of=sambamba.p/sambamba_utils_common_tmpdir.d.o -c ../sambamba/utils/common/tmpdir.d [17/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_base.d.o.deps -of=sambamba.p/BioD_bio_core_base.d.o -c ../BioD/bio/core/base.d [18/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_block.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_block.d.o -c ../BioD/bio/core/bgzf/block.d [19/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_validate.d.o.deps -of=sambamba.p/sambamba_validate.d.o -c ../sambamba/validate.d [20/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_chunk.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_chunk.d.o -c ../BioD/bio/core/bgzf/chunk.d [21/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_constants.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_constants.d.o -c ../BioD/bio/core/bgzf/constants.d [22/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_compress.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_compress.d.o -c ../BioD/bio/core/bgzf/compress.d [23/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_outputstream.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_outputstream.d.o -c ../BioD/bio/core/bgzf/outputstream.d [24/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_inputstream.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_inputstream.d.o -c ../BioD/bio/core/bgzf/inputstream.d [25/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_virtualoffset.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_virtualoffset.d.o -c ../BioD/bio/core/bgzf/virtualoffset.d [26/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_call.d.o.deps -of=sambamba.p/BioD_bio_core_call.d.o -c ../BioD/bio/core/call.d [27/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_genotype.d.o.deps -of=sambamba.p/BioD_bio_core_genotype.d.o -c ../BioD/bio/core/genotype.d [28/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_kmer.d.o.deps -of=sambamba.p/BioD_bio_core_kmer.d.o -c ../BioD/bio/core/kmer.d [29/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_decompress.d.o.deps -of=sambamba.p/BioD_bio_core_decompress.d.o -c ../BioD/bio/core/decompress.d [30/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_progressbar.d.o.deps -of=sambamba.p/sambamba_utils_common_progressbar.d.o -c ../sambamba/utils/common/progressbar.d [31/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_tinymap.d.o.deps -of=sambamba.p/BioD_bio_core_tinymap.d.o -c ../BioD/bio/core/tinymap.d [32/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_region.d.o.deps -of=sambamba.p/BioD_bio_core_region.d.o -c ../BioD/bio/core/region.d [33/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_sequence.d.o.deps -of=sambamba.p/BioD_bio_core_sequence.d.o -c ../BioD/bio/core/sequence.d [34/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_algo.d.o.deps -of=sambamba.p/BioD_bio_core_utils_algo.d.o -c ../BioD/bio/core/utils/algo.d [35/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_exception.d.o.deps -of=sambamba.p/BioD_bio_core_utils_exception.d.o -c ../BioD/bio/core/utils/exception.d [36/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_memoize.d.o.deps -of=sambamba.p/BioD_bio_core_utils_memoize.d.o -c ../BioD/bio/core/utils/memoize.d [37/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_format.d.o.deps -of=sambamba.p/BioD_bio_core_utils_format.d.o -c ../BioD/bio/core/utils/format.d [38/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_merge.d.o.deps -of=sambamba.p/sambamba_merge.d.o -c ../sambamba/merge.d [39/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_bylinefast.d.o.deps -of=sambamba.p/BioD_bio_core_utils_bylinefast.d.o -c ../BioD/bio/core/utils/bylinefast.d [40/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_outbuffer.d.o.deps -of=sambamba.p/BioD_bio_core_utils_outbuffer.d.o -c ../BioD/bio/core/utils/outbuffer.d [41/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_sort.d.o.deps -of=sambamba.p/sambamba_sort.d.o -c ../sambamba/sort.d [42/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_roundbuf.d.o.deps -of=sambamba.p/BioD_bio_core_utils_roundbuf.d.o -c ../BioD/bio/core/utils/roundbuf.d [43/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_range.d.o.deps -of=sambamba.p/BioD_bio_core_utils_range.d.o -c ../BioD/bio/core/utils/range.d [44/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_switchendianness.d.o.deps -of=sambamba.p/BioD_bio_core_utils_switchendianness.d.o -c ../BioD/bio/core/utils/switchendianness.d [45/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_zlib.d.o.deps -of=sambamba.p/BioD_bio_core_utils_zlib.d.o -c ../BioD/bio/core/utils/zlib.d [46/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_stream.d.o.deps -of=sambamba.p/BioD_bio_core_utils_stream.d.o -c ../BioD/bio/core/utils/stream.d ../BioD/bio/core/utils/stream.d(32): Deprecation: switch case fallthrough - use 'goto case;' if intended [47/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 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../BioD/bio/std/experimental/hts/constants.d [50/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_tmpfile.d.o.deps -of=sambamba.p/BioD_bio_core_utils_tmpfile.d.o -c ../BioD/bio/core/utils/tmpfile.d [51/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_logger.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_logger.d.o -c ../BioD/bio/std/experimental/hts/logger.d [52/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_hashing.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_hashing.d.o -c ../BioD/bio/std/experimental/hts/hashing.d [53/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bam_writer.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bam_writer.d.o -c ../BioD/bio/std/experimental/hts/bam/writer.d [54/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_reads.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_reads.d.o -c ../BioD/bio/std/experimental/hts/reads.d [55/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_pileup.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_pileup.d.o -c ../BioD/bio/std/experimental/hts/pileup.d [56/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bgzf_writer.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bgzf_writer.d.o -c ../BioD/bio/std/experimental/hts/bgzf_writer.d [57/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_unpack.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_unpack.d.o -c ../BioD/bio/std/experimental/hts/unpack.d [58/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_genotype_maf.d.o.deps -of=sambamba.p/BioD_bio_std_genotype_maf.d.o -c ../BioD/bio/std/genotype/maf.d [59/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_file_fastq.d.o.deps -of=sambamba.p/BioD_bio_std_file_fastq.d.o -c ../BioD/bio/std/file/fastq.d [60/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_abstractreader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_abstractreader.d.o -c ../BioD/bio/std/hts/bam/abstractreader.d [61/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_bai_bin.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_bai_bin.d.o -c ../BioD/bio/std/hts/bam/bai/bin.d [62/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_depth.d.o.deps -of=sambamba.p/sambamba_depth.d.o -c ../sambamba/depth.d [63/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_filtering.d.o.deps -of=sambamba.p/sambamba_utils_common_filtering.d.o -c ../sambamba/utils/common/filtering.d [64/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_baifile.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_baifile.d.o -c ../BioD/bio/std/hts/bam/baifile.d [65/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_baseinfo.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_baseinfo.d.o -c ../BioD/bio/std/hts/bam/baseinfo.d [66/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_constants.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_constants.d.o -c ../BioD/bio/std/hts/bam/constants.d [67/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_cigar.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_cigar.d.o -c ../BioD/bio/std/hts/bam/cigar.d [68/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bgzf.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bgzf.d.o -c ../BioD/bio/std/experimental/hts/bgzf.d ../BioD/bio/std/experimental/hts/bgzf.d(91): Deprecation: package bio.core.utils is not accessible here, perhaps add 'static import bio.core.utils;' ../BioD/bio/std/experimental/hts/bgzf.d(91): Deprecation: module bio.core.utils.zlib is not accessible here, perhaps add 'static import bio.core.utils.zlib;' [69/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_core.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_core.d.o -c ../BioD/bio/std/hts/bam/md/core.d [70/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_reconstruct.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_reconstruct.d.o -c ../BioD/bio/std/hts/bam/md/reconstruct.d [71/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_parse.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_parse.d.o -c ../BioD/bio/std/hts/bam/md/parse.d [72/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bam_reader.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bam_reader.d.o -c ../BioD/bio/std/experimental/hts/bam/reader.d [73/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_pileup.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_pileup.d.o -c ../BioD/bio/std/hts/bam/pileup.d [74/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_genotype_snp.d.o.deps -of=sambamba.p/BioD_bio_std_genotype_snp.d.o -c ../BioD/bio/std/genotype/snp.d [75/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_file_fai.d.o.deps -of=sambamba.p/BioD_bio_std_file_fai.d.o -c ../BioD/bio/std/file/fai.d [76/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_operation.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_operation.d.o -c ../BioD/bio/std/hts/bam/md/operation.d [77/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_file_fasta.d.o.deps -of=sambamba.p/BioD_bio_std_file_fasta.d.o -c ../BioD/bio/std/file/fasta.d [78/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_view.d.o.deps -of=sambamba.p/sambamba_view.d.o -c ../sambamba/view.d [79/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_region.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_region.d.o -c ../BioD/bio/std/hts/bam/region.d [80/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_referenceinfo.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_referenceinfo.d.o -c ../BioD/bio/std/hts/bam/referenceinfo.d [81/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_bai_indexing.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_bai_indexing.d.o -c ../BioD/bio/std/hts/bam/bai/indexing.d [82/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_readrange.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_readrange.d.o -c ../BioD/bio/std/hts/bam/readrange.d [83/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_splitter.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_splitter.d.o -c ../BioD/bio/std/hts/bam/splitter.d [84/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_reference.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_reference.d.o -c ../BioD/bio/std/hts/bam/reference.d [85/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_randomaccessmanager.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_randomaccessmanager.d.o -c ../BioD/bio/std/hts/bam/randomaccessmanager.d [86/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_iontorrent_flowindex.d.o.deps -of=sambamba.p/BioD_bio_std_hts_iontorrent_flowindex.d.o -c ../BioD/bio/std/hts/iontorrent/flowindex.d [87/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_validation_samheader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_validation_samheader.d.o -c ../BioD/bio/std/hts/bam/validation/samheader.d [88/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_markdup.d.o.deps -of=sambamba.p/sambamba_markdup.d.o -c ../sambamba/markdup.d [89/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_iontorrent_flowcall.d.o.deps -of=sambamba.p/BioD_bio_std_hts_iontorrent_flowcall.d.o -c ../BioD/bio/std/hts/iontorrent/flowcall.d [90/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_writer.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_writer.d.o -c ../BioD/bio/std/hts/bam/writer.d [91/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_queryparser.d.o.deps -of=sambamba.p/sambamba_utils_common_queryparser.d.o -c ../sambamba/utils/common/queryparser.d [92/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_sam_reader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_sam_reader.d.o -c ../BioD/bio/std/hts/sam/reader.d [93/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_utils_array.d.o.deps -of=sambamba.p/BioD_bio_std_hts_utils_array.d.o -c ../BioD/bio/std/hts/utils/array.d [94/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_snpcallers_simple.d.o.deps -of=sambamba.p/BioD_bio_std_hts_snpcallers_simple.d.o -c ../BioD/bio/std/hts/snpcallers/simple.d [95/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_utils_graph.d.o.deps -of=sambamba.p/BioD_bio_std_hts_utils_graph.d.o -c ../BioD/bio/std/hts/utils/graph.d [96/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_snpcallers_maq.d.o.deps -of=sambamba.p/BioD_bio_std_hts_snpcallers_maq.d.o -c ../BioD/bio/std/hts/snpcallers/maq.d [97/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_maf_block.d.o.deps -of=sambamba.p/BioD_bio_std_maf_block.d.o -c ../BioD/bio/std/maf/block.d [98/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_sam_utils_recordparser.d.o.deps -of=sambamba.p/BioD_bio_std_hts_sam_utils_recordparser.d.o -c ../BioD/bio/std/hts/sam/utils/recordparser.d [99/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_utils_value.d.o.deps -of=sambamba.p/BioD_bio_std_hts_utils_value.d.o -c ../BioD/bio/std/hts/utils/value.d [100/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_reader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_reader.d.o -c ../BioD/bio/std/hts/bam/reader.d [101/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_constants.d.o.deps -of=sambamba.p/BioD_bio_std_sff_constants.d.o -c 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-of=sambamba.p/BioD_bio_std_sff_read.d.o -c ../BioD/bio/std/sff/read.d [105/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_maf_reader.d.o.deps -of=sambamba.p/BioD_bio_std_maf_reader.d.o -c ../BioD/bio/std/maf/reader.d [106/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_utils_roundup.d.o.deps -of=sambamba.p/BioD_bio_std_sff_utils_roundup.d.o -c ../BioD/bio/std/sff/utils/roundup.d [107/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_maf_parser.d.o.deps -of=sambamba.p/BioD_bio_std_maf_parser.d.o -c ../BioD/bio/std/maf/parser.d [108/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_writer.d.o.deps -of=sambamba.p/BioD_bio_std_sff_writer.d.o -c ../BioD/bio/std/sff/writer.d [109/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_doformat.d.o.deps -of=sambamba.p/BioD_contrib_undead_doformat.d.o -c ../BioD/contrib/undead/doformat.d ../BioD/contrib/undead/doformat.d(128): Deprecation: use of imaginary type `ifloat` is deprecated, use `float` instead ../BioD/contrib/undead/doformat.d(129): Deprecation: use of imaginary type `idouble` is deprecated, use `double` instead ../BioD/contrib/undead/doformat.d(130): Deprecation: use of imaginary type `ireal` is deprecated, use `real` instead ../BioD/contrib/undead/doformat.d(131): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/doformat.d(132): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/doformat.d(133): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead [110/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_readrange.d.o.deps -of=sambamba.p/BioD_bio_std_sff_readrange.d.o -c ../BioD/bio/std/sff/readrange.d [111/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_cstream.d.o.deps -of=sambamba.p/BioD_contrib_undead_cstream.d.o -c ../BioD/contrib/undead/cstream.d [112/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_reader.d.o.deps -of=sambamba.p/BioD_bio_std_sff_reader.d.o -c ../BioD/bio/std/sff/reader.d [113/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_utf.d.o.deps -of=sambamba.p/BioD_contrib_undead_utf.d.o -c ../BioD/contrib/undead/utf.d [114/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_internal_file.d.o.deps -of=sambamba.p/BioD_contrib_undead_internal_file.d.o -c ../BioD/contrib/undead/internal/file.d [115/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_sam_utils_fastrecordparser.d.o.deps -of=sambamba.p/BioD_bio_std_hts_sam_utils_fastrecordparser.d.o -c ../BioD/bio/std/hts/sam/utils/fastrecordparser.d [116/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_read.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_read.d.o -c ../BioD/bio/std/hts/bam/read.d [117/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/thirdparty_mergesort.d.o.deps -of=sambamba.p/thirdparty_mergesort.d.o -c ../thirdparty/mergesort.d [118/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/utils_version_.d.o.deps -of=sambamba.p/utils_version_.d.o -c ../utils/version_.d [119/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_attribute.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_attribute.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/attribute.d [120/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_common.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_common.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/common.d [121/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/thirdparty_unstablesort.d.o.deps -of=sambamba.p/thirdparty_unstablesort.d.o -c ../thirdparty/unstablesort.d [122/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off 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-boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_register.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_register.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/register.d [126/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_exception.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_exception.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/exception.d [127/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_buffer.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_buffer.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/buffer.d [128/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/_build_reproducible-path_sambamba-1.0.1+dfsg_obj-aarch64-linux-gnu_utils_ldc_version_info_.d.o.deps -of=sambamba.p/_build_reproducible-path_sambamba-1.0.1+dfsg_obj-aarch64-linux-gnu_utils_ldc_version_info_.d.o -c /build/reproducible-path/sambamba-1.0.1+dfsg/obj-aarch64-linux-gnu/utils/ldc_version_info_.d [129/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_multireader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_multireader.d.o -c ../BioD/bio/std/hts/bam/multireader.d [130/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_value.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_value.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/value.d [131/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_packer.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_packer.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/packer.d [132/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_streaming_unpacker.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_streaming_unpacker.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/streaming_unpacker.d [133/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_tagvalue.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_tagvalue.d.o -c ../BioD/bio/std/hts/bam/tagvalue.d [134/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_sam_header.d.o.deps -of=sambamba.p/BioD_bio_std_hts_sam_header.d.o -c ../BioD/bio/std/hts/sam/header.d [135/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_validation_alignment.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_validation_alignment.d.o -c ../BioD/bio/std/hts/bam/validation/alignment.d [136/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_stream.d.o.deps -of=sambamba.p/BioD_contrib_undead_stream.d.o -c ../BioD/contrib/undead/stream.d ../BioD/contrib/undead/stream.d(450): Deprecation: use of imaginary type `ifloat` is deprecated, use `float` instead ../BioD/contrib/undead/stream.d(451): Deprecation: use of imaginary type `idouble` is deprecated, use `double` instead ../BioD/contrib/undead/stream.d(452): Deprecation: use of imaginary type `ireal` is deprecated, use `real` instead ../BioD/contrib/undead/stream.d(453): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/stream.d(454): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/stream.d(455): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/stream.d(1116): Deprecation: use of imaginary type `ifloat` is deprecated, use `float` instead ../BioD/contrib/undead/stream.d(1117): Deprecation: use of imaginary type `idouble` is deprecated, use `double` instead ../BioD/contrib/undead/stream.d(1118): Deprecation: use of imaginary type `ireal` is deprecated, use `real` instead ../BioD/contrib/undead/stream.d(1119): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/stream.d(1120): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/stream.d(1121): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/doformat.d(494): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/doformat.d(449): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/doformat.d(447): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/doformat.d(449): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/doformat.d(447): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/doformat.d(449): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/doformat.d(447): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/stream.d(2472): Deprecation: use of imaginary type `ifloat` is deprecated, use `float` instead 11 deprecation warnings omitted, use `-verrors=0` to show all [137/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_utils_samheadermerger.d.o.deps -of=sambamba.p/BioD_bio_std_hts_utils_samheadermerger.d.o -c ../BioD/bio/std/hts/utils/samheadermerger.d [138/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_pileup.d.o.deps -of=sambamba.p/sambamba_pileup.d.o -c ../sambamba/pileup.d [139/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_unpacker.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_unpacker.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/unpacker.d [140/140] ldc2 -of=sambamba sambamba.p/sambamba_main.d.o sambamba.p/sambamba_depth.d.o sambamba.p/sambamba_fixbins.d.o sambamba.p/sambamba_flagstat.d.o sambamba.p/sambamba_index.d.o sambamba.p/sambamba_markdup2.d.o sambamba.p/sambamba_markdup.d.o sambamba.p/sambamba_merge.d.o sambamba.p/sambamba_pileup.d.o sambamba.p/sambamba_slice.d.o sambamba.p/sambamba_sort.d.o sambamba.p/sambamba_subsample.d.o sambamba.p/sambamba_utils_common_bed.d.o sambamba.p/sambamba_utils_common_file.d.o sambamba.p/sambamba_utils_common_filtering.d.o sambamba.p/sambamba_utils_common_intervaltree.d.o sambamba.p/sambamba_utils_common_ldc_gc_workaround.d.o sambamba.p/sambamba_utils_common_overwrite.d.o sambamba.p/sambamba_utils_common_pratt_parser.d.o sambamba.p/sambamba_utils_common_progressbar.d.o sambamba.p/sambamba_utils_common_queryparser.d.o sambamba.p/sambamba_utils_common_readstorage.d.o sambamba.p/sambamba_utils_common_tmpdir.d.o sambamba.p/sambamba_utils_view_alignmentrangeprocessor.d.o sambamba.p/sambamba_utils_view_headerserializer.d.o sambamba.p/sambamba_validate.d.o sambamba.p/sambamba_view.d.o sambamba.p/BioD_bio_core_base.d.o sambamba.p/BioD_bio_core_bgzf_block.d.o sambamba.p/BioD_bio_core_bgzf_chunk.d.o sambamba.p/BioD_bio_core_bgzf_compress.d.o sambamba.p/BioD_bio_core_bgzf_constants.d.o sambamba.p/BioD_bio_core_bgzf_inputstream.d.o sambamba.p/BioD_bio_core_bgzf_outputstream.d.o sambamba.p/BioD_bio_core_bgzf_virtualoffset.d.o sambamba.p/BioD_bio_core_call.d.o sambamba.p/BioD_bio_core_decompress.d.o sambamba.p/BioD_bio_core_genotype.d.o sambamba.p/BioD_bio_core_kmer.d.o sambamba.p/BioD_bio_core_region.d.o sambamba.p/BioD_bio_core_sequence.d.o sambamba.p/BioD_bio_core_tinymap.d.o sambamba.p/BioD_bio_core_utils_algo.d.o sambamba.p/BioD_bio_core_utils_bylinefast.d.o sambamba.p/BioD_bio_core_utils_exception.d.o sambamba.p/BioD_bio_core_utils_format.d.o sambamba.p/BioD_bio_core_utils_memoize.d.o sambamba.p/BioD_bio_core_utils_outbuffer.d.o sambamba.p/BioD_bio_core_utils_range.d.o sambamba.p/BioD_bio_core_utils_roundbuf.d.o sambamba.p/BioD_bio_core_utils_stream.d.o sambamba.p/BioD_bio_core_utils_switchendianness.d.o sambamba.p/BioD_bio_core_utils_tmpfile.d.o sambamba.p/BioD_bio_core_utils_zlib.d.o sambamba.p/BioD_bio_std_experimental_hts_bam_header.d.o sambamba.p/BioD_bio_std_experimental_hts_bam_reader.d.o sambamba.p/BioD_bio_std_experimental_hts_bam_writer.d.o sambamba.p/BioD_bio_std_experimental_hts_bgzf.d.o sambamba.p/BioD_bio_std_experimental_hts_bgzf_writer.d.o sambamba.p/BioD_bio_std_experimental_hts_constants.d.o sambamba.p/BioD_bio_std_experimental_hts_hashing.d.o sambamba.p/BioD_bio_std_experimental_hts_logger.d.o sambamba.p/BioD_bio_std_experimental_hts_pileup.d.o sambamba.p/BioD_bio_std_experimental_hts_reads.d.o sambamba.p/BioD_bio_std_experimental_hts_unpack.d.o sambamba.p/BioD_bio_std_file_fai.d.o sambamba.p/BioD_bio_std_file_fasta.d.o sambamba.p/BioD_bio_std_file_fastq.d.o sambamba.p/BioD_bio_std_genotype_maf.d.o sambamba.p/BioD_bio_std_genotype_snp.d.o sambamba.p/BioD_bio_std_hts_bam_abstractreader.d.o sambamba.p/BioD_bio_std_hts_bam_bai_bin.d.o sambamba.p/BioD_bio_std_hts_bam_baifile.d.o sambamba.p/BioD_bio_std_hts_bam_bai_indexing.d.o sambamba.p/BioD_bio_std_hts_bam_baseinfo.d.o sambamba.p/BioD_bio_std_hts_bam_cigar.d.o sambamba.p/BioD_bio_std_hts_bam_constants.d.o sambamba.p/BioD_bio_std_hts_bam_md_core.d.o sambamba.p/BioD_bio_std_hts_bam_md_operation.d.o sambamba.p/BioD_bio_std_hts_bam_md_parse.d.o sambamba.p/BioD_bio_std_hts_bam_md_reconstruct.d.o sambamba.p/BioD_bio_std_hts_bam_multireader.d.o sambamba.p/BioD_bio_std_hts_bam_pileup.d.o sambamba.p/BioD_bio_std_hts_bam_randomaccessmanager.d.o sambamba.p/BioD_bio_std_hts_bam_read.d.o sambamba.p/BioD_bio_std_hts_bam_reader.d.o sambamba.p/BioD_bio_std_hts_bam_readrange.d.o sambamba.p/BioD_bio_std_hts_bam_reference.d.o sambamba.p/BioD_bio_std_hts_bam_referenceinfo.d.o sambamba.p/BioD_bio_std_hts_bam_region.d.o sambamba.p/BioD_bio_std_hts_bam_splitter.d.o sambamba.p/BioD_bio_std_hts_bam_tagvalue.d.o sambamba.p/BioD_bio_std_hts_bam_validation_alignment.d.o sambamba.p/BioD_bio_std_hts_bam_validation_samheader.d.o sambamba.p/BioD_bio_std_hts_bam_writer.d.o sambamba.p/BioD_bio_std_hts_iontorrent_flowcall.d.o sambamba.p/BioD_bio_std_hts_iontorrent_flowindex.d.o sambamba.p/BioD_bio_std_hts_sam_header.d.o sambamba.p/BioD_bio_std_hts_sam_reader.d.o sambamba.p/BioD_bio_std_hts_sam_utils_fastrecordparser.d.o sambamba.p/BioD_bio_std_hts_sam_utils_recordparser.d.o sambamba.p/BioD_bio_std_hts_snpcallers_maq.d.o sambamba.p/BioD_bio_std_hts_snpcallers_simple.d.o sambamba.p/BioD_bio_std_hts_utils_array.d.o sambamba.p/BioD_bio_std_hts_utils_graph.d.o sambamba.p/BioD_bio_std_hts_utils_samheadermerger.d.o sambamba.p/BioD_bio_std_hts_utils_value.d.o sambamba.p/BioD_bio_std_maf_block.d.o sambamba.p/BioD_bio_std_maf_parser.d.o sambamba.p/BioD_bio_std_maf_reader.d.o sambamba.p/BioD_bio_std_range_splitter.d.o sambamba.p/BioD_bio_std_sff_constants.d.o sambamba.p/BioD_bio_std_sff_index.d.o sambamba.p/BioD_bio_std_sff_read.d.o sambamba.p/BioD_bio_std_sff_reader.d.o sambamba.p/BioD_bio_std_sff_readrange.d.o sambamba.p/BioD_bio_std_sff_utils_roundup.d.o sambamba.p/BioD_bio_std_sff_writer.d.o sambamba.p/BioD_contrib_undead_cstream.d.o sambamba.p/BioD_contrib_undead_doformat.d.o sambamba.p/BioD_contrib_undead_internal_file.d.o sambamba.p/BioD_contrib_undead_stream.d.o sambamba.p/BioD_contrib_undead_utf.d.o sambamba.p/utils_lz4.d.o sambamba.p/utils_strip_bcf_header.d.o sambamba.p/utils_version_.d.o sambamba.p/thirdparty_mergesort.d.o sambamba.p/thirdparty_unstablesort.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_attribute.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_common.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_package.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_register.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_unpacker.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_buffer.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_exception.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_packer.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_streaming_unpacker.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_value.d.o sambamba.p/_build_reproducible-path_sambamba-1.0.1+dfsg_obj-aarch64-linux-gnu_utils_ldc_version_info_.d.o -L=-flto=full -L=-rpath -L=/usr/lib/aarch64-linux-gnu -L=-rpath-link -L=/usr/lib/aarch64-linux-gnu -L=--allow-shlib-undefined -link-defaultlib-shared -L=-z -L=relro -release -wi -g -O2 /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblz4.so /usr/lib/aarch64-linux-gnu/libxxhash.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/sambamba-1.0.1+dfsg' echo "FIXME: Build time tests needs fixing" FIXME: Build time tests needs fixing make[1]: Leaving directory '/build/reproducible-path/sambamba-1.0.1+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=meson dh_prep -O--buildsystem=meson dh_auto_install --destdir=debian/sambamba/ -O--buildsystem=meson cd obj-aarch64-linux-gnu && DESTDIR=/build/reproducible-path/sambamba-1.0.1\+dfsg/debian/sambamba LC_ALL=C.UTF-8 ninja install [0/1] Installing files Installing sambamba to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/bin Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba-flagstat.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba-index.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba-markdup.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba-merge.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba-pileup.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba-slice.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba-sort.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/man/sambamba-view.1 to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/reproducible-path/sambamba-1.0.1+dfsg/etc/bash_completion.d/sambamba to /build/reproducible-path/sambamba-1.0.1+dfsg/debian/sambamba/usr/share/bash-completion/completions dh_installdocs -O--buildsystem=meson dh_installchangelogs -O--buildsystem=meson dh_installman -O--buildsystem=meson dh_installsystemduser -O--buildsystem=meson dh_perl -O--buildsystem=meson dh_link -O--buildsystem=meson dh_strip_nondeterminism -O--buildsystem=meson dh_compress -O--buildsystem=meson dh_fixperms -O--buildsystem=meson debian/rules override_dh_missing make[1]: Entering directory '/build/reproducible-path/sambamba-1.0.1+dfsg' dh_missing --fail-missing make[1]: Leaving directory '/build/reproducible-path/sambamba-1.0.1+dfsg' dh_dwz -a -O--buildsystem=meson dh_strip -a -O--buildsystem=meson dh_makeshlibs -a -O--buildsystem=meson dh_shlibdeps -a -O--buildsystem=meson dh_installdeb -O--buildsystem=meson dh_gencontrol -O--buildsystem=meson dh_md5sums -O--buildsystem=meson dh_builddeb -O--buildsystem=meson dpkg-deb: building package 'sambamba' in '../sambamba_1.0.1+dfsg-2_arm64.deb'. dpkg-deb: building package 'sambamba-dbgsym' in '../sambamba-dbgsym_1.0.1+dfsg-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../sambamba_1.0.1+dfsg-2_arm64.buildinfo dpkg-genchanges --build=binary -O../sambamba_1.0.1+dfsg-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3936800/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3936800/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3936800 and its subdirectories I: Current time: Wed Apr 23 03:58:42 +14 2025 I: pbuilder-time-stamp: 1745330322 + false + set +x Tue Apr 22 13:58:42 UTC 2025 I: Signing ./b2/sambamba_1.0.1+dfsg-2_arm64.buildinfo as sambamba_1.0.1+dfsg-2_arm64.buildinfo.asc Tue Apr 22 13:58:42 UTC 2025 I: Signed ./b2/sambamba_1.0.1+dfsg-2_arm64.buildinfo as ./b2/sambamba_1.0.1+dfsg-2_arm64.buildinfo.asc Tue Apr 22 13:58:42 UTC 2025 - build #2 for sambamba/unstable/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Tue Apr 22 13:58:42 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-lhP62aZI, removing. /srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo: total 140 drwxr-xr-x 2 jenkins jenkins 4096 Apr 22 13:56 b1 drwxr-xr-x 2 jenkins jenkins 4096 Apr 22 13:58 b2 -rw------- 1 jenkins jenkins 125196 Apr 22 13:56 rbuildlog.TRLEZpN -rw-r--r-- 1 jenkins jenkins 2276 Apr 16 2024 sambamba_1.0.1+dfsg-2.dsc /srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo/b1: total 6920 -rw-r--r-- 1 jenkins jenkins 121476 Apr 22 13:56 build.log -rw-r--r-- 1 jenkins jenkins 6397176 Apr 22 13:56 sambamba-dbgsym_1.0.1+dfsg-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 6928 Apr 22 13:56 sambamba_1.0.1+dfsg-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2276 Apr 22 13:56 sambamba_1.0.1+dfsg-2.dsc -rw-r--r-- 1 jenkins jenkins 8167 Apr 22 13:56 sambamba_1.0.1+dfsg-2_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 9049 Apr 22 13:56 sambamba_1.0.1+dfsg-2_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1651 Apr 22 13:56 sambamba_1.0.1+dfsg-2_arm64.changes -rw-r--r-- 1 jenkins jenkins 500660 Apr 22 13:56 sambamba_1.0.1+dfsg-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 1516 Apr 22 13:56 sambamba_1.0.1+dfsg-2_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo/b2: total 6904 -rw-r--r-- 1 jenkins jenkins 123420 Apr 22 13:58 build.log -rw-r--r-- 1 jenkins jenkins 6397176 Apr 22 13:58 sambamba-dbgsym_1.0.1+dfsg-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 6928 Apr 22 13:58 sambamba_1.0.1+dfsg-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2276 Apr 22 13:58 sambamba_1.0.1+dfsg-2.dsc -rw-r--r-- 1 jenkins jenkins 8167 Apr 22 13:58 sambamba_1.0.1+dfsg-2_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 9049 Apr 22 13:58 sambamba_1.0.1+dfsg-2_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1651 Apr 22 13:58 sambamba_1.0.1+dfsg-2_arm64.changes -rw-r--r-- 1 jenkins jenkins 500660 Apr 22 13:58 sambamba_1.0.1+dfsg-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 1516 Apr 22 13:58 sambamba_1.0.1+dfsg-2_source.changes Tue Apr 22 13:58:43 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Tue Apr 22 13:58:44 UTC 2025 I: sambamba_1.0.1+dfsg-2_arm64.changes: Format: 1.8 Date: Tue, 16 Apr 2024 20:18:00 +0200 Source: sambamba Binary: sambamba sambamba-dbgsym Architecture: arm64 Version: 1.0.1+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: sambamba - tools for working with SAM/BAM data Closes: 1067959 Changes: sambamba (1.0.1+dfsg-2) unstable; urgency=medium . * Build-Depends: architecture-is-64-bit, architecture-is-little-endian Closes: #1067959 * Drop unneeded copyright paragraph * Drop unused patches * Standards-Version: 4.7.0 (routine-update) * Set upstream metadata fields: Repository. * Build-Depends: s/pkg-config/pkgconf/ Checksums-Sha1: 4ae66eefd5373406ccbbe3bad0065633f66ef3b2 6397176 sambamba-dbgsym_1.0.1+dfsg-2_arm64.deb 7a3690a60d1fc4a0081873e3f11a6cae4ead945a 8167 sambamba_1.0.1+dfsg-2_arm64.buildinfo 41647c5b6a8773fd7a858bea289fce9f18e174ad 500660 sambamba_1.0.1+dfsg-2_arm64.deb Checksums-Sha256: 360708e9fedbcec17131055d05a9903ac697ccb4b4e1655fc4c43513a07bb881 6397176 sambamba-dbgsym_1.0.1+dfsg-2_arm64.deb 419c170afd348ea763bc661aff8f32be949b6b515ad1168d86d1a313735f6e37 8167 sambamba_1.0.1+dfsg-2_arm64.buildinfo c8e8cae995625a1e8a73837885bbecb7100419af4b1a4ff5835d1b73b42a550e 500660 sambamba_1.0.1+dfsg-2_arm64.deb Files: b883dbd8fdcd90a19d8483edf9bfa597 6397176 debug optional sambamba-dbgsym_1.0.1+dfsg-2_arm64.deb fc2f7acd529953e430346e2d67468ac1 8167 science optional sambamba_1.0.1+dfsg-2_arm64.buildinfo e06de8ccbe10e3058d92e628ae91c26e 500660 science optional sambamba_1.0.1+dfsg-2_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/sambamba_1.0.1+dfsg-2.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/sambamba_1.0.1+dfsg-2.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/sambamba_1.0.1+dfsg-2.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/sambamba_1.0.1+dfsg-2.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/arm64/sambamba_1.0.1+dfsg-2_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/sambamba_1.0.1+dfsg-2.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-04-22 13:56:47.225014898 +0000 +++ b2/build.log 2025-04-22 13:58:43.374552781 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon May 25 08:17:29 -12 2026 -I: pbuilder-time-stamp: 1779740249 +I: Current time: Wed Apr 23 03:56:50 +14 2025 +I: pbuilder-time-stamp: 1745330210 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -24,52 +24,84 @@ dpkg-source: info: applying 2to3.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1704919/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3936800/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 22 13:56 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3936800/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3936800/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='108fa20de42c42b5a4ae98bc3f5ee535' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1704919' - PS1='# ' - PS2='> ' + INVOCATION_ID=d885fe1fcc2f4751964e8d333f2abd34 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3936800 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo/pbuilderrc_b711 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo/b1 --logfile b1/build.log sambamba_1.0.1+dfsg-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo/pbuilderrc_CdYA --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo/b2 --logfile b2/build.log sambamba_1.0.1+dfsg-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1704919/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3936800/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -271,7 +303,7 @@ Get: 129 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 78.1.0-1.2 [738 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 meson all 1.7.0-1 [639 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 shunit2 all 2.1.8-4 [33.9 kB] -Fetched 80.5 MB in 1s (82.7 MB/s) +Fetched 80.5 MB in 1s (128 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19953 files and directories currently installed.) @@ -705,8 +737,8 @@ Setting up tzdata (2025b-2) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon May 25 20:18:17 UTC 2026. -Universal Time is now: Mon May 25 20:18:17 UTC 2026. +Local time is now: Tue Apr 22 13:57:39 UTC 2025. +Universal Time is now: Tue Apr 22 13:57:39 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... @@ -822,7 +854,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/sambamba-1.0.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../sambamba_1.0.1+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/3936800/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3936800/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/sambamba-1.0.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../sambamba_1.0.1+dfsg-2_source.changes dpkg-buildpackage: info: source package sambamba dpkg-buildpackage: info: source version 1.0.1+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -899,151 +935,150 @@ dh_auto_build -O--buildsystem=meson cd obj-aarch64-linux-gnu && LC_ALL=C.UTF-8 ninja -j12 -v [1/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_main.d.o.deps -of=sambamba.p/sambamba_main.d.o -c ../sambamba/main.d -[2/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_index.d.o.deps -of=sambamba.p/sambamba_index.d.o -c ../sambamba/index.d -[3/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_file.d.o.deps -of=sambamba.p/sambamba_utils_common_file.d.o -c ../sambamba/utils/common/file.d -[4/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_markdup2.d.o.deps -of=sambamba.p/sambamba_markdup2.d.o -c ../sambamba/markdup2.d +[2/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_markdup2.d.o.deps -of=sambamba.p/sambamba_markdup2.d.o -c ../sambamba/markdup2.d +[3/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_index.d.o.deps -of=sambamba.p/sambamba_index.d.o -c ../sambamba/index.d +[4/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_file.d.o.deps -of=sambamba.p/sambamba_utils_common_file.d.o -c ../sambamba/utils/common/file.d [5/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_intervaltree.d.o.deps -of=sambamba.p/sambamba_utils_common_intervaltree.d.o -c ../sambamba/utils/common/intervaltree.d [6/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_fixbins.d.o.deps -of=sambamba.p/sambamba_fixbins.d.o -c ../sambamba/fixbins.d [7/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_overwrite.d.o.deps -of=sambamba.p/sambamba_utils_common_overwrite.d.o -c ../sambamba/utils/common/overwrite.d [8/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_pratt_parser.d.o.deps -of=sambamba.p/sambamba_utils_common_pratt_parser.d.o -c ../sambamba/utils/common/pratt_parser.d -[9/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_ldc_gc_workaround.d.o.deps -of=sambamba.p/sambamba_utils_common_ldc_gc_workaround.d.o -c ../sambamba/utils/common/ldc_gc_workaround.d -[10/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_subsample.d.o.deps -of=sambamba.p/sambamba_subsample.d.o -c ../sambamba/subsample.d -[11/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_readstorage.d.o.deps -of=sambamba.p/sambamba_utils_common_readstorage.d.o -c ../sambamba/utils/common/readstorage.d -[12/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_bed.d.o.deps -of=sambamba.p/sambamba_utils_common_bed.d.o -c ../sambamba/utils/common/bed.d -[13/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_flagstat.d.o.deps -of=sambamba.p/sambamba_flagstat.d.o -c ../sambamba/flagstat.d -[14/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_slice.d.o.deps -of=sambamba.p/sambamba_slice.d.o -c ../sambamba/slice.d -[15/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_view_alignmentrangeprocessor.d.o.deps -of=sambamba.p/sambamba_utils_view_alignmentrangeprocessor.d.o -c ../sambamba/utils/view/alignmentrangeprocessor.d +[9/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_bed.d.o.deps -of=sambamba.p/sambamba_utils_common_bed.d.o -c ../sambamba/utils/common/bed.d +[10/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_flagstat.d.o.deps -of=sambamba.p/sambamba_flagstat.d.o -c ../sambamba/flagstat.d +[11/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_slice.d.o.deps -of=sambamba.p/sambamba_slice.d.o -c ../sambamba/slice.d +[12/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_readstorage.d.o.deps -of=sambamba.p/sambamba_utils_common_readstorage.d.o -c ../sambamba/utils/common/readstorage.d +[13/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_subsample.d.o.deps -of=sambamba.p/sambamba_subsample.d.o -c ../sambamba/subsample.d +[14/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_view_alignmentrangeprocessor.d.o.deps -of=sambamba.p/sambamba_utils_view_alignmentrangeprocessor.d.o -c ../sambamba/utils/view/alignmentrangeprocessor.d +[15/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_ldc_gc_workaround.d.o.deps -of=sambamba.p/sambamba_utils_common_ldc_gc_workaround.d.o -c ../sambamba/utils/common/ldc_gc_workaround.d [16/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi 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-wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_constants.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_constants.d.o -c ../BioD/bio/core/bgzf/constants.d -[23/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_compress.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_compress.d.o -c ../BioD/bio/core/bgzf/compress.d -[24/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_virtualoffset.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_virtualoffset.d.o -c ../BioD/bio/core/bgzf/virtualoffset.d -[25/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_call.d.o.deps -of=sambamba.p/BioD_bio_core_call.d.o -c ../BioD/bio/core/call.d -[26/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_outputstream.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_outputstream.d.o -c ../BioD/bio/core/bgzf/outputstream.d +[18/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_block.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_block.d.o -c ../BioD/bio/core/bgzf/block.d +[19/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_validate.d.o.deps -of=sambamba.p/sambamba_validate.d.o -c ../sambamba/validate.d +[20/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_chunk.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_chunk.d.o -c ../BioD/bio/core/bgzf/chunk.d +[21/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_constants.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_constants.d.o -c ../BioD/bio/core/bgzf/constants.d +[22/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_compress.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_compress.d.o -c ../BioD/bio/core/bgzf/compress.d +[23/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_outputstream.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_outputstream.d.o -c ../BioD/bio/core/bgzf/outputstream.d +[24/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_inputstream.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_inputstream.d.o -c 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-of=sambamba.p/BioD_bio_core_genotype.d.o -c ../BioD/bio/core/genotype.d -[28/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_decompress.d.o.deps -of=sambamba.p/BioD_bio_core_decompress.d.o -c ../BioD/bio/core/decompress.d -[29/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_kmer.d.o.deps -of=sambamba.p/BioD_bio_core_kmer.d.o -c ../BioD/bio/core/kmer.d -[30/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_region.d.o.deps -of=sambamba.p/BioD_bio_core_region.d.o -c ../BioD/bio/core/region.d -[31/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_inputstream.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_inputstream.d.o -c ../BioD/bio/core/bgzf/inputstream.d -[32/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_tinymap.d.o.deps -of=sambamba.p/BioD_bio_core_tinymap.d.o -c ../BioD/bio/core/tinymap.d -[33/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_algo.d.o.deps -of=sambamba.p/BioD_bio_core_utils_algo.d.o -c ../BioD/bio/core/utils/algo.d -[34/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_sequence.d.o.deps -of=sambamba.p/BioD_bio_core_sequence.d.o -c ../BioD/bio/core/sequence.d +[28/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_kmer.d.o.deps -of=sambamba.p/BioD_bio_core_kmer.d.o -c ../BioD/bio/core/kmer.d +[29/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_decompress.d.o.deps -of=sambamba.p/BioD_bio_core_decompress.d.o -c ../BioD/bio/core/decompress.d +[30/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_progressbar.d.o.deps -of=sambamba.p/sambamba_utils_common_progressbar.d.o -c ../sambamba/utils/common/progressbar.d +[31/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_tinymap.d.o.deps -of=sambamba.p/BioD_bio_core_tinymap.d.o -c ../BioD/bio/core/tinymap.d +[32/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_region.d.o.deps -of=sambamba.p/BioD_bio_core_region.d.o -c ../BioD/bio/core/region.d +[33/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_sequence.d.o.deps -of=sambamba.p/BioD_bio_core_sequence.d.o -c ../BioD/bio/core/sequence.d +[34/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_algo.d.o.deps -of=sambamba.p/BioD_bio_core_utils_algo.d.o -c ../BioD/bio/core/utils/algo.d [35/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_exception.d.o.deps -of=sambamba.p/BioD_bio_core_utils_exception.d.o -c ../BioD/bio/core/utils/exception.d [36/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_memoize.d.o.deps -of=sambamba.p/BioD_bio_core_utils_memoize.d.o -c ../BioD/bio/core/utils/memoize.d [37/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_format.d.o.deps -of=sambamba.p/BioD_bio_core_utils_format.d.o -c ../BioD/bio/core/utils/format.d -[38/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_range.d.o.deps -of=sambamba.p/BioD_bio_core_utils_range.d.o -c ../BioD/bio/core/utils/range.d -[39/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_roundbuf.d.o.deps -of=sambamba.p/BioD_bio_core_utils_roundbuf.d.o -c ../BioD/bio/core/utils/roundbuf.d -[40/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_bylinefast.d.o.deps -of=sambamba.p/BioD_bio_core_utils_bylinefast.d.o -c ../BioD/bio/core/utils/bylinefast.d -[41/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_switchendianness.d.o.deps -of=sambamba.p/BioD_bio_core_utils_switchendianness.d.o -c ../BioD/bio/core/utils/switchendianness.d -[42/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_outbuffer.d.o.deps -of=sambamba.p/BioD_bio_core_utils_outbuffer.d.o -c ../BioD/bio/core/utils/outbuffer.d -[43/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_zlib.d.o.deps -of=sambamba.p/BioD_bio_core_utils_zlib.d.o -c ../BioD/bio/core/utils/zlib.d -[44/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_stream.d.o.deps -of=sambamba.p/BioD_bio_core_utils_stream.d.o -c ../BioD/bio/core/utils/stream.d +[38/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_merge.d.o.deps -of=sambamba.p/sambamba_merge.d.o -c ../sambamba/merge.d +[39/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_bylinefast.d.o.deps -of=sambamba.p/BioD_bio_core_utils_bylinefast.d.o -c ../BioD/bio/core/utils/bylinefast.d +[40/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_outbuffer.d.o.deps -of=sambamba.p/BioD_bio_core_utils_outbuffer.d.o -c ../BioD/bio/core/utils/outbuffer.d +[41/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_sort.d.o.deps -of=sambamba.p/sambamba_sort.d.o -c ../sambamba/sort.d +[42/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_roundbuf.d.o.deps -of=sambamba.p/BioD_bio_core_utils_roundbuf.d.o -c ../BioD/bio/core/utils/roundbuf.d +[43/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_range.d.o.deps -of=sambamba.p/BioD_bio_core_utils_range.d.o -c ../BioD/bio/core/utils/range.d +[44/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_switchendianness.d.o.deps -of=sambamba.p/BioD_bio_core_utils_switchendianness.d.o -c ../BioD/bio/core/utils/switchendianness.d +[45/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_zlib.d.o.deps -of=sambamba.p/BioD_bio_core_utils_zlib.d.o -c ../BioD/bio/core/utils/zlib.d +[46/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_stream.d.o.deps -of=sambamba.p/BioD_bio_core_utils_stream.d.o -c ../BioD/bio/core/utils/stream.d ../BioD/bio/core/utils/stream.d(32): Deprecation: switch case fallthrough - use 'goto case;' if intended -[45/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bam_header.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bam_header.d.o -c ../BioD/bio/std/experimental/hts/bam/header.d -[46/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_tmpfile.d.o.deps -of=sambamba.p/BioD_bio_core_utils_tmpfile.d.o -c ../BioD/bio/core/utils/tmpfile.d -[47/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_merge.d.o.deps -of=sambamba.p/sambamba_merge.d.o -c ../sambamba/merge.d -[48/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_view_headerserializer.d.o.deps -of=sambamba.p/sambamba_utils_view_headerserializer.d.o -c ../sambamba/utils/view/headerserializer.d +[47/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_view_headerserializer.d.o.deps -of=sambamba.p/sambamba_utils_view_headerserializer.d.o -c ../sambamba/utils/view/headerserializer.d +[48/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bam_header.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bam_header.d.o -c ../BioD/bio/std/experimental/hts/bam/header.d [49/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_constants.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_constants.d.o -c ../BioD/bio/std/experimental/hts/constants.d -[50/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_hashing.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_hashing.d.o -c ../BioD/bio/std/experimental/hts/hashing.d -[51/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bam_writer.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bam_writer.d.o -c ../BioD/bio/std/experimental/hts/bam/writer.d -[52/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_logger.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_logger.d.o -c ../BioD/bio/std/experimental/hts/logger.d -[53/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_reads.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_reads.d.o -c ../BioD/bio/std/experimental/hts/reads.d -[54/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_pileup.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_pileup.d.o -c ../BioD/bio/std/experimental/hts/pileup.d -[55/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_unpack.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_unpack.d.o -c ../BioD/bio/std/experimental/hts/unpack.d -[56/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_sort.d.o.deps -of=sambamba.p/sambamba_sort.d.o -c ../sambamba/sort.d -[57/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bgzf_writer.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bgzf_writer.d.o -c ../BioD/bio/std/experimental/hts/bgzf_writer.d +[50/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_tmpfile.d.o.deps -of=sambamba.p/BioD_bio_core_utils_tmpfile.d.o -c ../BioD/bio/core/utils/tmpfile.d +[51/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_logger.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_logger.d.o -c ../BioD/bio/std/experimental/hts/logger.d +[52/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_hashing.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_hashing.d.o -c ../BioD/bio/std/experimental/hts/hashing.d +[53/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bam_writer.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bam_writer.d.o -c ../BioD/bio/std/experimental/hts/bam/writer.d +[54/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_reads.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_reads.d.o -c ../BioD/bio/std/experimental/hts/reads.d +[55/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_pileup.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_pileup.d.o -c ../BioD/bio/std/experimental/hts/pileup.d +[56/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bgzf_writer.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bgzf_writer.d.o -c ../BioD/bio/std/experimental/hts/bgzf_writer.d +[57/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_unpack.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_unpack.d.o -c ../BioD/bio/std/experimental/hts/unpack.d [58/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_genotype_maf.d.o.deps -of=sambamba.p/BioD_bio_std_genotype_maf.d.o -c ../BioD/bio/std/genotype/maf.d [59/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_file_fastq.d.o.deps -of=sambamba.p/BioD_bio_std_file_fastq.d.o -c ../BioD/bio/std/file/fastq.d [60/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_abstractreader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_abstractreader.d.o -c ../BioD/bio/std/hts/bam/abstractreader.d [61/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_bai_bin.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_bai_bin.d.o -c ../BioD/bio/std/hts/bam/bai/bin.d -[62/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_baifile.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_baifile.d.o -c ../BioD/bio/std/hts/bam/baifile.d +[62/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_depth.d.o.deps -of=sambamba.p/sambamba_depth.d.o -c ../sambamba/depth.d [63/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_filtering.d.o.deps -of=sambamba.p/sambamba_utils_common_filtering.d.o -c ../sambamba/utils/common/filtering.d -[64/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bgzf.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bgzf.d.o -c ../BioD/bio/std/experimental/hts/bgzf.d -../BioD/bio/std/experimental/hts/bgzf.d(91): Deprecation: package bio.core.utils is not accessible here, perhaps add 'static import bio.core.utils;' -../BioD/bio/std/experimental/hts/bgzf.d(91): Deprecation: module bio.core.utils.zlib is not accessible here, perhaps add 'static import bio.core.utils.zlib;' +[64/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_baifile.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_baifile.d.o -c ../BioD/bio/std/hts/bam/baifile.d [65/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_baseinfo.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_baseinfo.d.o -c ../BioD/bio/std/hts/bam/baseinfo.d [66/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_constants.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_constants.d.o -c ../BioD/bio/std/hts/bam/constants.d -[67/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_core.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_core.d.o -c ../BioD/bio/std/hts/bam/md/core.d -[68/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_cigar.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_cigar.d.o -c ../BioD/bio/std/hts/bam/cigar.d -[69/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bam_reader.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bam_reader.d.o -c ../BioD/bio/std/experimental/hts/bam/reader.d -[70/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_parse.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_parse.d.o -c ../BioD/bio/std/hts/bam/md/parse.d -[71/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_reconstruct.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_reconstruct.d.o -c ../BioD/bio/std/hts/bam/md/reconstruct.d -[72/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_file_fai.d.o.deps -of=sambamba.p/BioD_bio_std_file_fai.d.o -c ../BioD/bio/std/file/fai.d -[73/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_file_fasta.d.o.deps -of=sambamba.p/BioD_bio_std_file_fasta.d.o -c ../BioD/bio/std/file/fasta.d -[74/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_pileup.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_pileup.d.o -c ../BioD/bio/std/hts/bam/pileup.d -[75/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_view.d.o.deps -of=sambamba.p/sambamba_view.d.o -c ../sambamba/view.d -[76/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_markdup.d.o.deps -of=sambamba.p/sambamba_markdup.d.o -c ../sambamba/markdup.d -[77/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_bai_indexing.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_bai_indexing.d.o -c ../BioD/bio/std/hts/bam/bai/indexing.d -[78/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_readrange.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_readrange.d.o -c ../BioD/bio/std/hts/bam/readrange.d +[67/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_cigar.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_cigar.d.o -c ../BioD/bio/std/hts/bam/cigar.d +[68/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bgzf.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bgzf.d.o -c ../BioD/bio/std/experimental/hts/bgzf.d +../BioD/bio/std/experimental/hts/bgzf.d(91): Deprecation: package bio.core.utils is not accessible here, perhaps add 'static import bio.core.utils;' +../BioD/bio/std/experimental/hts/bgzf.d(91): Deprecation: module bio.core.utils.zlib is not accessible here, perhaps add 'static import bio.core.utils.zlib;' +[69/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_core.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_core.d.o -c ../BioD/bio/std/hts/bam/md/core.d +[70/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_reconstruct.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_reconstruct.d.o -c ../BioD/bio/std/hts/bam/md/reconstruct.d +[71/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_parse.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_parse.d.o -c ../BioD/bio/std/hts/bam/md/parse.d +[72/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bam_reader.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bam_reader.d.o -c ../BioD/bio/std/experimental/hts/bam/reader.d +[73/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_pileup.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_pileup.d.o -c ../BioD/bio/std/hts/bam/pileup.d +[74/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_genotype_snp.d.o.deps -of=sambamba.p/BioD_bio_std_genotype_snp.d.o -c ../BioD/bio/std/genotype/snp.d +[75/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_file_fai.d.o.deps -of=sambamba.p/BioD_bio_std_file_fai.d.o -c ../BioD/bio/std/file/fai.d +[76/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_operation.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_operation.d.o -c ../BioD/bio/std/hts/bam/md/operation.d +[77/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_file_fasta.d.o.deps -of=sambamba.p/BioD_bio_std_file_fasta.d.o -c ../BioD/bio/std/file/fasta.d +[78/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_view.d.o.deps -of=sambamba.p/sambamba_view.d.o -c ../sambamba/view.d [79/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off 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-I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_depth.d.o.deps -of=sambamba.p/sambamba_depth.d.o -c ../sambamba/depth.d -[83/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_referenceinfo.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_referenceinfo.d.o -c ../BioD/bio/std/hts/bam/referenceinfo.d +[80/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_referenceinfo.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_referenceinfo.d.o -c ../BioD/bio/std/hts/bam/referenceinfo.d +[81/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_bai_indexing.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_bai_indexing.d.o -c ../BioD/bio/std/hts/bam/bai/indexing.d +[82/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_readrange.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_readrange.d.o -c ../BioD/bio/std/hts/bam/readrange.d +[83/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_splitter.d.o.deps 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-I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_operation.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_operation.d.o -c ../BioD/bio/std/hts/bam/md/operation.d -[89/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_writer.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_writer.d.o -c ../BioD/bio/std/hts/bam/writer.d -[90/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_iontorrent_flowcall.d.o.deps -of=sambamba.p/BioD_bio_std_hts_iontorrent_flowcall.d.o -c 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-I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_reader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_reader.d.o -c ../BioD/bio/std/hts/bam/reader.d [101/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_constants.d.o.deps -of=sambamba.p/BioD_bio_std_sff_constants.d.o -c ../BioD/bio/std/sff/constants.d [102/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_index.d.o.deps -of=sambamba.p/BioD_bio_std_sff_index.d.o -c ../BioD/bio/std/sff/index.d -[103/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_read.d.o.deps -of=sambamba.p/BioD_bio_std_sff_read.d.o -c ../BioD/bio/std/sff/read.d -[104/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_utils_value.d.o.deps -of=sambamba.p/BioD_bio_std_hts_utils_value.d.o -c ../BioD/bio/std/hts/utils/value.d -[105/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_maf_parser.d.o.deps -of=sambamba.p/BioD_bio_std_maf_parser.d.o -c ../BioD/bio/std/maf/parser.d +[103/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_range_splitter.d.o.deps -of=sambamba.p/BioD_bio_std_range_splitter.d.o -c ../BioD/bio/std/range/splitter.d +[104/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_read.d.o.deps -of=sambamba.p/BioD_bio_std_sff_read.d.o -c ../BioD/bio/std/sff/read.d +[105/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_maf_reader.d.o.deps -of=sambamba.p/BioD_bio_std_maf_reader.d.o -c ../BioD/bio/std/maf/reader.d [106/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_utils_roundup.d.o.deps -of=sambamba.p/BioD_bio_std_sff_utils_roundup.d.o -c ../BioD/bio/std/sff/utils/roundup.d -[107/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_maf_reader.d.o.deps -of=sambamba.p/BioD_bio_std_maf_reader.d.o -c ../BioD/bio/std/maf/reader.d -[108/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_readrange.d.o.deps -of=sambamba.p/BioD_bio_std_sff_readrange.d.o -c ../BioD/bio/std/sff/readrange.d -[109/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_writer.d.o.deps -of=sambamba.p/BioD_bio_std_sff_writer.d.o -c ../BioD/bio/std/sff/writer.d -[110/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_doformat.d.o.deps -of=sambamba.p/BioD_contrib_undead_doformat.d.o -c ../BioD/contrib/undead/doformat.d +[107/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_maf_parser.d.o.deps -of=sambamba.p/BioD_bio_std_maf_parser.d.o -c ../BioD/bio/std/maf/parser.d +[108/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_writer.d.o.deps -of=sambamba.p/BioD_bio_std_sff_writer.d.o -c ../BioD/bio/std/sff/writer.d +[109/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_doformat.d.o.deps -of=sambamba.p/BioD_contrib_undead_doformat.d.o -c ../BioD/contrib/undead/doformat.d ../BioD/contrib/undead/doformat.d(128): Deprecation: use of imaginary type `ifloat` is deprecated, use `float` instead ../BioD/contrib/undead/doformat.d(129): Deprecation: use of imaginary type `idouble` is deprecated, use `double` instead ../BioD/contrib/undead/doformat.d(130): Deprecation: use of imaginary type `ireal` is deprecated, use `real` instead ../BioD/contrib/undead/doformat.d(131): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/doformat.d(132): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/doformat.d(133): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead -[111/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_reader.d.o.deps -of=sambamba.p/BioD_bio_std_sff_reader.d.o -c ../BioD/bio/std/sff/reader.d -[112/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_utf.d.o.deps -of=sambamba.p/BioD_contrib_undead_utf.d.o -c ../BioD/contrib/undead/utf.d -[113/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_cstream.d.o.deps -of=sambamba.p/BioD_contrib_undead_cstream.d.o -c ../BioD/contrib/undead/cstream.d +[110/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_readrange.d.o.deps -of=sambamba.p/BioD_bio_std_sff_readrange.d.o -c ../BioD/bio/std/sff/readrange.d +[111/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_cstream.d.o.deps -of=sambamba.p/BioD_contrib_undead_cstream.d.o -c ../BioD/contrib/undead/cstream.d +[112/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_reader.d.o.deps -of=sambamba.p/BioD_bio_std_sff_reader.d.o -c ../BioD/bio/std/sff/reader.d +[113/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_utf.d.o.deps -of=sambamba.p/BioD_contrib_undead_utf.d.o -c ../BioD/contrib/undead/utf.d [114/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_internal_file.d.o.deps -of=sambamba.p/BioD_contrib_undead_internal_file.d.o -c ../BioD/contrib/undead/internal/file.d -[115/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/utils_lz4.d.o.deps -of=sambamba.p/utils_lz4.d.o -c ../utils/lz4.d -[116/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_sam_utils_fastrecordparser.d.o.deps -of=sambamba.p/BioD_bio_std_hts_sam_utils_fastrecordparser.d.o -c ../BioD/bio/std/hts/sam/utils/fastrecordparser.d -[117/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_tagvalue.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_tagvalue.d.o -c ../BioD/bio/std/hts/bam/tagvalue.d -[118/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/thirdparty_mergesort.d.o.deps -of=sambamba.p/thirdparty_mergesort.d.o -c ../thirdparty/mergesort.d -[119/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/utils_version_.d.o.deps -of=sambamba.p/utils_version_.d.o -c ../utils/version_.d -[120/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/thirdparty_unstablesort.d.o.deps -of=sambamba.p/thirdparty_unstablesort.d.o -c ../thirdparty/unstablesort.d -[121/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_attribute.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_attribute.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/attribute.d -[122/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_common.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_common.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/common.d -[123/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/utils_strip_bcf_header.d.o.deps -of=sambamba.p/utils_strip_bcf_header.d.o -c ../utils/strip_bcf_header.d -[124/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_package.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_package.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/package.d -[125/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_exception.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_exception.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/exception.d -[126/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_register.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_register.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/register.d +[115/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_sam_utils_fastrecordparser.d.o.deps -of=sambamba.p/BioD_bio_std_hts_sam_utils_fastrecordparser.d.o -c ../BioD/bio/std/hts/sam/utils/fastrecordparser.d +[116/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_read.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_read.d.o -c ../BioD/bio/std/hts/bam/read.d +[117/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/thirdparty_mergesort.d.o.deps -of=sambamba.p/thirdparty_mergesort.d.o -c ../thirdparty/mergesort.d +[118/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/utils_version_.d.o.deps -of=sambamba.p/utils_version_.d.o -c ../utils/version_.d +[119/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_attribute.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_attribute.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/attribute.d +[120/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_common.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_common.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/common.d +[121/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/thirdparty_unstablesort.d.o.deps -of=sambamba.p/thirdparty_unstablesort.d.o -c ../thirdparty/unstablesort.d +[122/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/utils_strip_bcf_header.d.o.deps -of=sambamba.p/utils_strip_bcf_header.d.o -c ../utils/strip_bcf_header.d +[123/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_package.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_package.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/package.d +[124/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/utils_lz4.d.o.deps -of=sambamba.p/utils_lz4.d.o -c ../utils/lz4.d +[125/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_register.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_register.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/register.d +[126/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_exception.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_exception.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/exception.d [127/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_buffer.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_buffer.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/buffer.d [128/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/_build_reproducible-path_sambamba-1.0.1+dfsg_obj-aarch64-linux-gnu_utils_ldc_version_info_.d.o.deps -of=sambamba.p/_build_reproducible-path_sambamba-1.0.1+dfsg_obj-aarch64-linux-gnu_utils_ldc_version_info_.d.o -c /build/reproducible-path/sambamba-1.0.1+dfsg/obj-aarch64-linux-gnu/utils/ldc_version_info_.d -[129/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_validation_alignment.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_validation_alignment.d.o -c ../BioD/bio/std/hts/bam/validation/alignment.d +[129/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_multireader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_multireader.d.o -c ../BioD/bio/std/hts/bam/multireader.d [130/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_value.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_value.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/value.d [131/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_packer.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_packer.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/packer.d [132/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_streaming_unpacker.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_streaming_unpacker.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/streaming_unpacker.d -[133/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_read.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_read.d.o -c ../BioD/bio/std/hts/bam/read.d +[133/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_tagvalue.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_tagvalue.d.o -c ../BioD/bio/std/hts/bam/tagvalue.d [134/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_sam_header.d.o.deps -of=sambamba.p/BioD_bio_std_hts_sam_header.d.o -c ../BioD/bio/std/hts/sam/header.d -[135/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_multireader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_multireader.d.o -c ../BioD/bio/std/hts/bam/multireader.d -[136/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_utils_samheadermerger.d.o.deps -of=sambamba.p/BioD_bio_std_hts_utils_samheadermerger.d.o -c ../BioD/bio/std/hts/utils/samheadermerger.d -[137/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_stream.d.o.deps -of=sambamba.p/BioD_contrib_undead_stream.d.o -c ../BioD/contrib/undead/stream.d +[135/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_validation_alignment.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_validation_alignment.d.o -c ../BioD/bio/std/hts/bam/validation/alignment.d +[136/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_stream.d.o.deps -of=sambamba.p/BioD_contrib_undead_stream.d.o -c ../BioD/contrib/undead/stream.d ../BioD/contrib/undead/stream.d(450): Deprecation: use of imaginary type `ifloat` is deprecated, use `float` instead ../BioD/contrib/undead/stream.d(451): Deprecation: use of imaginary type `idouble` is deprecated, use `double` instead ../BioD/contrib/undead/stream.d(452): Deprecation: use of imaginary type `ireal` is deprecated, use `real` instead @@ -1065,6 +1100,7 @@ ../BioD/contrib/undead/doformat.d(447): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/stream.d(2472): Deprecation: use of imaginary type `ifloat` is deprecated, use `float` instead 11 deprecation warnings omitted, use `-verrors=0` to show all +[137/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_utils_samheadermerger.d.o.deps -of=sambamba.p/BioD_bio_std_hts_utils_samheadermerger.d.o -c ../BioD/bio/std/hts/utils/samheadermerger.d [138/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_pileup.d.o.deps -of=sambamba.p/sambamba_pileup.d.o -c ../sambamba/pileup.d [139/140] ldc2 -I=sambamba.p -I=. -I=.. -I../BioD -I../BioD/contrib/msgpack-d/src -enable-color -wi -release -wi -g -O2 -g -release -boundscheck=off -enable-inlining -singleobj -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_unpacker.d.o.deps -of=sambamba.p/BioD_contrib_msgpack-d_src_msgpack_unpacker.d.o -c ../BioD/contrib/msgpack-d/src/msgpack/unpacker.d [140/140] ldc2 -of=sambamba sambamba.p/sambamba_main.d.o sambamba.p/sambamba_depth.d.o sambamba.p/sambamba_fixbins.d.o sambamba.p/sambamba_flagstat.d.o sambamba.p/sambamba_index.d.o sambamba.p/sambamba_markdup2.d.o sambamba.p/sambamba_markdup.d.o sambamba.p/sambamba_merge.d.o sambamba.p/sambamba_pileup.d.o sambamba.p/sambamba_slice.d.o sambamba.p/sambamba_sort.d.o sambamba.p/sambamba_subsample.d.o sambamba.p/sambamba_utils_common_bed.d.o sambamba.p/sambamba_utils_common_file.d.o sambamba.p/sambamba_utils_common_filtering.d.o sambamba.p/sambamba_utils_common_intervaltree.d.o sambamba.p/sambamba_utils_common_ldc_gc_workaround.d.o sambamba.p/sambamba_utils_common_overwrite.d.o sambamba.p/sambamba_utils_common_pratt_parser.d.o sambamba.p/sambamba_utils_common_progressbar.d.o sambamba.p/sambamba_utils_common_queryparser.d.o sambamba.p/sambamba_utils_common_readstorage.d.o sambamba.p/sambamba_utils_common_tmpdir.d.o sambamba.p/sambamba_utils_view_alignmentrangeprocessor.d.o sambamba.p/sambamba_utils_view_headerserializer.d.o sambamba.p/sambamba_validate.d.o sambamba.p/sambamba_view.d.o sambamba.p/BioD_bio_core_base.d.o sambamba.p/BioD_bio_core_bgzf_block.d.o sambamba.p/BioD_bio_core_bgzf_chunk.d.o sambamba.p/BioD_bio_core_bgzf_compress.d.o sambamba.p/BioD_bio_core_bgzf_constants.d.o sambamba.p/BioD_bio_core_bgzf_inputstream.d.o sambamba.p/BioD_bio_core_bgzf_outputstream.d.o sambamba.p/BioD_bio_core_bgzf_virtualoffset.d.o sambamba.p/BioD_bio_core_call.d.o sambamba.p/BioD_bio_core_decompress.d.o sambamba.p/BioD_bio_core_genotype.d.o sambamba.p/BioD_bio_core_kmer.d.o sambamba.p/BioD_bio_core_region.d.o sambamba.p/BioD_bio_core_sequence.d.o sambamba.p/BioD_bio_core_tinymap.d.o sambamba.p/BioD_bio_core_utils_algo.d.o sambamba.p/BioD_bio_core_utils_bylinefast.d.o sambamba.p/BioD_bio_core_utils_exception.d.o sambamba.p/BioD_bio_core_utils_format.d.o sambamba.p/BioD_bio_core_utils_memoize.d.o sambamba.p/BioD_bio_core_utils_outbuffer.d.o sambamba.p/BioD_bio_core_utils_range.d.o sambamba.p/BioD_bio_core_utils_roundbuf.d.o sambamba.p/BioD_bio_core_utils_stream.d.o sambamba.p/BioD_bio_core_utils_switchendianness.d.o sambamba.p/BioD_bio_core_utils_tmpfile.d.o sambamba.p/BioD_bio_core_utils_zlib.d.o sambamba.p/BioD_bio_std_experimental_hts_bam_header.d.o sambamba.p/BioD_bio_std_experimental_hts_bam_reader.d.o sambamba.p/BioD_bio_std_experimental_hts_bam_writer.d.o sambamba.p/BioD_bio_std_experimental_hts_bgzf.d.o sambamba.p/BioD_bio_std_experimental_hts_bgzf_writer.d.o sambamba.p/BioD_bio_std_experimental_hts_constants.d.o sambamba.p/BioD_bio_std_experimental_hts_hashing.d.o sambamba.p/BioD_bio_std_experimental_hts_logger.d.o sambamba.p/BioD_bio_std_experimental_hts_pileup.d.o sambamba.p/BioD_bio_std_experimental_hts_reads.d.o sambamba.p/BioD_bio_std_experimental_hts_unpack.d.o sambamba.p/BioD_bio_std_file_fai.d.o sambamba.p/BioD_bio_std_file_fasta.d.o sambamba.p/BioD_bio_std_file_fastq.d.o sambamba.p/BioD_bio_std_genotype_maf.d.o sambamba.p/BioD_bio_std_genotype_snp.d.o sambamba.p/BioD_bio_std_hts_bam_abstractreader.d.o sambamba.p/BioD_bio_std_hts_bam_bai_bin.d.o sambamba.p/BioD_bio_std_hts_bam_baifile.d.o sambamba.p/BioD_bio_std_hts_bam_bai_indexing.d.o sambamba.p/BioD_bio_std_hts_bam_baseinfo.d.o sambamba.p/BioD_bio_std_hts_bam_cigar.d.o sambamba.p/BioD_bio_std_hts_bam_constants.d.o sambamba.p/BioD_bio_std_hts_bam_md_core.d.o sambamba.p/BioD_bio_std_hts_bam_md_operation.d.o sambamba.p/BioD_bio_std_hts_bam_md_parse.d.o sambamba.p/BioD_bio_std_hts_bam_md_reconstruct.d.o sambamba.p/BioD_bio_std_hts_bam_multireader.d.o sambamba.p/BioD_bio_std_hts_bam_pileup.d.o sambamba.p/BioD_bio_std_hts_bam_randomaccessmanager.d.o sambamba.p/BioD_bio_std_hts_bam_read.d.o sambamba.p/BioD_bio_std_hts_bam_reader.d.o sambamba.p/BioD_bio_std_hts_bam_readrange.d.o sambamba.p/BioD_bio_std_hts_bam_reference.d.o sambamba.p/BioD_bio_std_hts_bam_referenceinfo.d.o sambamba.p/BioD_bio_std_hts_bam_region.d.o sambamba.p/BioD_bio_std_hts_bam_splitter.d.o sambamba.p/BioD_bio_std_hts_bam_tagvalue.d.o sambamba.p/BioD_bio_std_hts_bam_validation_alignment.d.o sambamba.p/BioD_bio_std_hts_bam_validation_samheader.d.o sambamba.p/BioD_bio_std_hts_bam_writer.d.o sambamba.p/BioD_bio_std_hts_iontorrent_flowcall.d.o sambamba.p/BioD_bio_std_hts_iontorrent_flowindex.d.o sambamba.p/BioD_bio_std_hts_sam_header.d.o sambamba.p/BioD_bio_std_hts_sam_reader.d.o sambamba.p/BioD_bio_std_hts_sam_utils_fastrecordparser.d.o sambamba.p/BioD_bio_std_hts_sam_utils_recordparser.d.o sambamba.p/BioD_bio_std_hts_snpcallers_maq.d.o sambamba.p/BioD_bio_std_hts_snpcallers_simple.d.o sambamba.p/BioD_bio_std_hts_utils_array.d.o sambamba.p/BioD_bio_std_hts_utils_graph.d.o sambamba.p/BioD_bio_std_hts_utils_samheadermerger.d.o sambamba.p/BioD_bio_std_hts_utils_value.d.o sambamba.p/BioD_bio_std_maf_block.d.o sambamba.p/BioD_bio_std_maf_parser.d.o sambamba.p/BioD_bio_std_maf_reader.d.o sambamba.p/BioD_bio_std_range_splitter.d.o sambamba.p/BioD_bio_std_sff_constants.d.o sambamba.p/BioD_bio_std_sff_index.d.o sambamba.p/BioD_bio_std_sff_read.d.o sambamba.p/BioD_bio_std_sff_reader.d.o sambamba.p/BioD_bio_std_sff_readrange.d.o sambamba.p/BioD_bio_std_sff_utils_roundup.d.o sambamba.p/BioD_bio_std_sff_writer.d.o sambamba.p/BioD_contrib_undead_cstream.d.o sambamba.p/BioD_contrib_undead_doformat.d.o sambamba.p/BioD_contrib_undead_internal_file.d.o sambamba.p/BioD_contrib_undead_stream.d.o sambamba.p/BioD_contrib_undead_utf.d.o sambamba.p/utils_lz4.d.o sambamba.p/utils_strip_bcf_header.d.o sambamba.p/utils_version_.d.o sambamba.p/thirdparty_mergesort.d.o sambamba.p/thirdparty_unstablesort.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_attribute.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_common.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_package.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_register.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_unpacker.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_buffer.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_exception.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_packer.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_streaming_unpacker.d.o sambamba.p/BioD_contrib_msgpack-d_src_msgpack_value.d.o sambamba.p/_build_reproducible-path_sambamba-1.0.1+dfsg_obj-aarch64-linux-gnu_utils_ldc_version_info_.d.o -L=-flto=full -L=-rpath -L=/usr/lib/aarch64-linux-gnu -L=-rpath-link -L=/usr/lib/aarch64-linux-gnu -L=--allow-shlib-undefined -link-defaultlib-shared -L=-z -L=relro -release -wi -g -O2 /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblz4.so /usr/lib/aarch64-linux-gnu/libxxhash.so @@ -1120,12 +1156,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3936800/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3936800/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1704919 and its subdirectories -I: Current time: Mon May 25 08:19:46 -12 2026 -I: pbuilder-time-stamp: 1779740386 +I: removing directory /srv/workspace/pbuilder/3936800 and its subdirectories +I: Current time: Wed Apr 23 03:58:42 +14 2025 +I: pbuilder-time-stamp: 1745330322 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/sambamba_1.0.1+dfsg-2.diff: 91.8% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/sambamba_1.0.1+dfsg-2.diff.gz b2/build.log: 86.9% -- replaced with stdout Compressing the 1st log... b1/build.log: 87.3% -- replaced with stdout Tue Apr 22 13:58:45 UTC 2025 I: diffoscope 294 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_sambamba_unstable_arm64_1745330325 + touch /var/log/reproducible-builds/diffoscope_stamp_sambamba_unstable_arm64_1745330325 + RESULT=0 + systemd-run '--description=diffoscope on sambamba/1.0.1+dfsg-2 in unstable/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_6-89497 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo --run-session -c jenkins-reproducible-unstable-diffoscope-58bc4ebb-2d8f-473e-96c9-cfa3fdd71853 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo/dbd-tmp-ch0p0no ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo/sambamba_1.0.1+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo/sambamba_1.0.1+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo/sambamba_1.0.1+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo/b1/sambamba_1.0.1+dfsg-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo/b2/sambamba_1.0.1+dfsg-2_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_6-89497.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo/sambamba_1.0.1+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo/sambamba_1.0.1+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo/sambamba_1.0.1+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo/b1/sambamba_1.0.1+dfsg-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.NI2T2Vgo/b2/sambamba_1.0.1+dfsg-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 220ms CPU time consumed: 220ms _ _ ___ __ _ _ __ ___ | |__ __ _ _ __ ___ | |__ __ _ / __|/ _` | '_ ` _ \| '_ \ / _` | '_ ` _ \| '_ \ / _` | \__ \ (_| | | | | | | |_) | (_| | | | | | | |_) | (_| | |___/\__,_|_| |_| |_|_.__/ \__,_|_| |_| |_|_.__/ \__,_| Tue Apr 22 13:58:46 UTC 2025 I: diffoscope 294 found no differences in the changes files, and a .buildinfo file also exists. Tue Apr 22 13:58:46 UTC 2025 I: sambamba from unstable built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-04-22 13:58:46] INFO: Starting at 2025-04-22 13:58:46.586904 [2025-04-22 13:58:46] INFO: Generating the pages of 1 package(s) [2025-04-22 13:58:47] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/arm64/sambamba didn't produce a buildlog, even though it has been built. [2025-04-22 13:58:47] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/sambamba_1.0.1+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/sambamba_1.0.1+dfsg-2.diff.gz is missing [2025-04-22 13:58:47] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/sambamba_1.0.1+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/sambamba_1.0.1+dfsg-2.diff.gz is missing [2025-04-22 13:58:47] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/sambamba_1.0.1+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/sambamba_1.0.1+dfsg-2.diff.gz is missing [2025-04-22 13:58:47] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/sambamba_1.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/sambamba_1.0+dfsg-1.diff.gz is missing [2025-04-22 13:58:47] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/sambamba_1.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/sambamba_1.0+dfsg-1.diff.gz is missing [2025-04-22 13:58:47] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/sambamba_0.8.0-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/sambamba_0.8.0-1.diff.gz is missing [2025-04-22 13:58:47] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/sambamba_0.8.0-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/sambamba_0.8.0-1.diff.gz is missing [2025-04-22 13:58:47] INFO: Finished at 2025-04-22 13:58:47.404207, took: 0:00:00.817307 Tue Apr 22 13:58:47 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/arm64/sambamba.html Tue Apr 22 13:58:47 UTC 2025 I: Submitting .buildinfo files to external archives: Tue Apr 22 13:58:47 UTC 2025 I: Submitting 12K b1/sambamba_1.0.1+dfsg-2_arm64.buildinfo.asc https://buildinfo.debian.net/7a3690a60d1fc4a0081873e3f11a6cae4ead945a/sambamba_1.0.1+dfsg-2_arm64 Tue Apr 22 13:58:48 UTC 2025 I: Submitting 12K b2/sambamba_1.0.1+dfsg-2_arm64.buildinfo.asc https://buildinfo.debian.net/99ee53907f8999fcd2b6b57911c283e48aacd54f/sambamba_1.0.1+dfsg-2_arm64 Tue Apr 22 13:58:49 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Apr 22 13:58:49 UTC 2025 I: Done submitting .buildinfo files. Tue Apr 22 13:58:49 UTC 2025 I: Removing signed sambamba_1.0.1+dfsg-2_arm64.buildinfo.asc files: removed './b1/sambamba_1.0.1+dfsg-2_arm64.buildinfo.asc' removed './b2/sambamba_1.0.1+dfsg-2_arm64.buildinfo.asc' 1745330329 arm64 unstable sambamba Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/sambamba_1.0.1+dfsg-2.rbuild.log: 85.5% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/sambamba_1.0.1+dfsg-2.rbuild.log.gz [2025-04-22 13:58:49] INFO: Starting at 2025-04-22 13:58:49.774691 [2025-04-22 13:58:49] INFO: Generating the pages of 1 package(s) [2025-04-22 13:58:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/sambamba_1.0.1+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/sambamba_1.0.1+dfsg-2.diff.gz is missing [2025-04-22 13:58:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/sambamba_1.0.1+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/sambamba_1.0.1+dfsg-2.diff.gz is missing [2025-04-22 13:58:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/sambamba_1.0.1+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/sambamba_1.0.1+dfsg-2.diff.gz is missing [2025-04-22 13:58:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/sambamba_1.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/sambamba_1.0+dfsg-1.diff.gz is missing [2025-04-22 13:58:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/sambamba_1.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/sambamba_1.0+dfsg-1.diff.gz is missing [2025-04-22 13:58:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/sambamba_0.8.0-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/sambamba_0.8.0-1.diff.gz is missing [2025-04-22 13:58:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/sambamba_0.8.0-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/sambamba_0.8.0-1.diff.gz is missing [2025-04-22 13:58:50] INFO: Finished at 2025-04-22 13:58:50.592598, took: 0:00:00.817911 All cleanup done. Tue Apr 22 13:58:50 UTC 2025 - total duration: 0h 4m 27s. Tue Apr 22 13:58:50 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-olt4Ydi0, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 4min 31.108s CPU time consumed: 7.856s