Running as unit: rb-build-arm64_6-90429.service ==================================================================================== Sat Apr 26 18:48:25 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_6) on jenkins, called using "codethink03-arm64 codethink04-arm64" as arguments. Sat Apr 26 18:48:25 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-CU38ioxg" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Apr 26 18:48:26 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Sat Apr 26 18:48:26 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-mg2hVt' Sat Apr 26 18:48:26 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Sat Apr 26 18:48:26 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-wy4zni' ok, let's check if seqsero is building anywhere yet… ok, seqsero is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of seqsero in unstable on arm64 on jenkins now. 1st build will be done on codethink03-arm64.debian.net. 2nd build will be done on codethink04-arm64.debian.net. ============================================================================= Sat Apr 26 18:48:46 UTC 2025 I: starting to build seqsero/unstable/arm64 on jenkins on '2025-04-26 18:48' Sat Apr 26 18:48:46 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_6/90429/console.log 1745693326 arm64 unstable seqsero Sat Apr 26 18:48:46 UTC 2025 I: Downloading source for unstable/seqsero=1.0.1+dfsg-6 --2025-04-26 18:48:46-- http://deb.debian.org/debian/pool/main/s/seqsero/seqsero_1.0.1%2bdfsg-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2024 (2.0K) [text/prs.lines.tag] Saving to: ‘seqsero_1.0.1+dfsg-6.dsc’ 0K . 100% 320M=0s 2025-04-26 18:48:46 (320 MB/s) - ‘seqsero_1.0.1+dfsg-6.dsc’ saved [2024/2024] --2025-04-26 18:48:46-- http://deb.debian.org/debian/pool/main/s/seqsero/seqsero_1.0.1%2bdfsg-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2024 (2.0K) [text/prs.lines.tag] Saving to: ‘seqsero_1.0.1+dfsg-6.dsc’ 0K . 100% 320M=0s 2025-04-26 18:48:46 (320 MB/s) - ‘seqsero_1.0.1+dfsg-6.dsc’ saved [2024/2024] Sat Apr 26 18:48:46 UTC 2025 I: seqsero_1.0.1+dfsg-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: seqsero Binary: seqsero Architecture: any Version: 1.0.1+dfsg-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/denglab/SeqSero Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/seqsero Vcs-Git: https://salsa.debian.org/med-team/seqsero.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3, bwa, sra-toolkit Package-List: seqsero deb science optional arch=any Checksums-Sha1: 5531311d55cff8cb84ebade2499ebedf4732a883 355568 seqsero_1.0.1+dfsg.orig.tar.xz 873a8b6a41031621e9c7dd05e2ac890750be0feb 43084 seqsero_1.0.1+dfsg-6.debian.tar.xz Checksums-Sha256: 37f9c68c941b5fe5648d86ad3e89235c3f7455aa3d2d933e75da211a9240bd0a 355568 seqsero_1.0.1+dfsg.orig.tar.xz 8e72e6bf6c087e0d533f1e2d7693686468b8b8820d71d19715783ec82a847156 43084 seqsero_1.0.1+dfsg-6.debian.tar.xz Files: 53cee0dd133a96cf84b614df0ccf72df 355568 seqsero_1.0.1+dfsg.orig.tar.xz 640dc43659231fad76ee23541e5da9e4 43084 seqsero_1.0.1+dfsg-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmM1n9wRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEzZBAAhws+Q68lNyn8s+h08GKNCdT8TIzEpxzw lUwZyI7Y9lNfu2qSaE+1X6qEVGaw+u5uMtvjqfU6sRu8jX6QtJKDTNXqJfIc15vc g5+3O8ubgAbChCWOxeJdpHHlaWnJ9CWxRld6QXFAWd7m35cSMAbo7s7dgTTpQdi9 dW4ZQ+Uo5AFQyXfXwN1BpeeoUJr9BHReBHb4tbPcxMYqljNc46CsfqpgyK7p2EGt jLatpM2oprHvaSFGaKGzo3leoF/8ClwI4CVFhoEwCESOsOGiZ+gQlUI3WMGS71uZ OUMLaEopUsUg0uByZI8ucRH8GxZ16S3LGUufrbjwAvWjWHfVKObQ0lGNC+PGNIBK V+Du/ztbQDO5SOXADEreCcV5p180GsXSB3XhDWHs3L9NmJb3xfoRfUTra/N/LNas fsI9rsm/rJYrouCtWZ6yDd1PMuJuE3nXbM4Bi+zKMbVWtwUC87BK9OD3VNXphu77 mjswMUyZlUt8vTY2b9pI+8qaUsEgGAsuAeAXqian6wCktTx7th8iaXck8QzrXDjO tj9l5DZLesyHJdpM+fFMFnqcqUvsVKdqTgWLY/wHMT26wGhiahllf2XloaopGSoi SMgR5nXmAj4BIiP3n/rfBrn7GwcknMiuvVnAxg9HpdmSScdNVg9Cs0WJaZk+l/4g ukbSIaL3XEA= =yjHb -----END PGP SIGNATURE----- Sat Apr 26 18:48:46 UTC 2025 I: Checking whether the package is not for us Sat Apr 26 18:48:46 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Sat Apr 26 18:48:46 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Sat Apr 26 18:48:46 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Sat Apr 26 18:48:46 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-MfQfcy' ==================================================================================== Sat May 30 01:11:48 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "1 seqsero unstable /srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3 1.0.1+dfsg-6" as arguments. Sat May 30 01:11:48 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-vEZoUysN" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat May 30 01:11:48 UTC 2026 I: Downloading source for unstable/seqsero=1.0.1+dfsg-6 Reading package lists... NOTICE: 'seqsero' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/seqsero.git Please use: git clone https://salsa.debian.org/med-team/seqsero.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 401 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main seqsero 1.0.1+dfsg-6 (dsc) [2024 B] Get:2 http://deb.debian.org/debian unstable/main seqsero 1.0.1+dfsg-6 (tar) [356 kB] Get:3 http://deb.debian.org/debian unstable/main seqsero 1.0.1+dfsg-6 (diff) [43.1 kB] Fetched 401 kB in 0s (2184 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'seqsero' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/seqsero.git Please use: git clone https://salsa.debian.org/med-team/seqsero.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 401 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main seqsero 1.0.1+dfsg-6 (dsc) [2024 B] Get:2 http://deb.debian.org/debian unstable/main seqsero 1.0.1+dfsg-6 (tar) [356 kB] Get:3 http://deb.debian.org/debian unstable/main seqsero 1.0.1+dfsg-6 (diff) [43.1 kB] Fetched 401 kB in 0s (2184 kB/s) Download complete and in download only mode ============================================================================= Building seqsero in unstable on arm64 on codethink03-arm64 now. Date: Sat May 30 02:11:48 BST 2026 Date UTC: Sat May 30 01:11:48 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri May 29 13:11:48 -12 2026 I: pbuilder-time-stamp: 1780103508 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [seqsero_1.0.1+dfsg-6.dsc] I: copying [./seqsero_1.0.1+dfsg.orig.tar.xz] I: copying [./seqsero_1.0.1+dfsg-6.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./seqsero_1.0.1+dfsg-6.dsc: unsupported subcommand dpkg-source: info: extracting seqsero in seqsero-1.0.1+dfsg dpkg-source: info: unpacking seqsero_1.0.1+dfsg.orig.tar.xz dpkg-source: info: unpacking seqsero_1.0.1+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_perl_interpreter.patch dpkg-source: info: applying fix_usage.patch dpkg-source: info: applying 2to3.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2794956/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='f5c8745f4a654c889c90e924577a35ef' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2794956' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3/pbuilderrc_ko2j --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3/b1 --logfile b1/build.log seqsero_1.0.1+dfsg-6.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2794956/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, bwa, sra-toolkit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on bwa; however: Package bwa is not installed. pbuilder-satisfydepends-dummy depends on sra-toolkit; however: Package sra-toolkit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} bwa{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libabsl20240722{a} libaec0{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhdf5-310{a} libidn2-0{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libmbedcrypto16{a} libmbedtls21{a} libmbedx509-7{a} libncbi-vdb3{a} libncbi-wvdb3{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libre2-11{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libsz2{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} ncbi-vdb-data{a} netbase{a} po-debconf{a} python3{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sra-toolkit{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx med-config publicsuffix wget 0 packages upgraded, 77 newly installed, 0 to remove and 0 not upgraded. Need to get 33.1 MB of archives. After unpacking 129 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.3-2 [855 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.7.1-1 [93.3 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.3-2 [1998 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.3-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025b-2 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.8-2 [21.3 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.3-2 [1890 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.3-2 [751 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.3-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.3-1 [28.2 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41-4 [93.9 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 bwa arm64 0.7.18-1 [198 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 37 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.4 [629 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20250414 [116 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libabsl20240722 arm64 20240722.0-3 [453 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libaec0 arm64 1.1.3-1+b1 [22.5 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1+b1 [24.2 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 53 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-2 [107 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-2 [179 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1.1 [71.4 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.8.0-1 [63.2 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.13.0-5 [349 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libsz2 arm64 1.1.3-1+b1 [8044 B] Get: 69 http://deb.debian.org/debian unstable/main arm64 libhdf5-310 arm64 1.14.5+repack-3 [1155 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libmbedcrypto16 arm64 3.6.3-1 [343 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libmbedx509-7 arm64 3.6.3-1 [148 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libmbedtls21 arm64 3.6.3-1 [224 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 ncbi-vdb-data all 3.2.1+dfsg-2 [88.5 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 libncbi-vdb3 arm64 3.2.1+dfsg-2 [1096 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libncbi-wvdb3 arm64 3.2.1+dfsg-2 [1097 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 libre2-11 arm64 20240702-3+b1 [149 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 sra-toolkit arm64 3.2.1+dfsg-4 [6996 kB] Fetched 33.1 MB in 1s (56.0 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.3-2_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.3-2) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.7.1-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.3-2_arm64.deb ... Unpacking python3.13-minimal (3.13.3-2) ... Setting up libpython3.13-minimal:arm64 (3.13.3-2) ... Setting up libexpat1:arm64 (2.7.1-1) ... Setting up python3.13-minimal (3.13.3-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20287 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.3-1_arm64.deb ... Unpacking python3-minimal (3.13.3-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-2_all.deb ... Unpacking tzdata (2025b-2) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.4.8-2_arm64.deb ... Unpacking libffi8:arm64 (3.4.8-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.2-6_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.3-2_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.3-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.3-2_arm64.deb ... Unpacking python3.13 (3.13.3-2) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.13.3-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.13.3-1) ... Setting up python3-minimal (3.13.3-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21299 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.3-1_arm64.deb ... Unpacking python3 (3.13.3-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../03-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.41-4_arm64.deb ... Unpacking bsdextrautils (2.41-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../09-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-8_arm64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package bwa. Preparing to unpack .../16-bwa_0.7.18-1_arm64.deb ... Unpacking bwa (0.7.18-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../23-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../25-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../26-libxml2_2.12.7+dfsg+really2.9.14-0.4_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.23.1-1_arm64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package dh-python. Preparing to unpack .../31-dh-python_6.20250414_all.deb ... Unpacking dh-python (6.20250414) ... Selecting previously unselected package libabsl20240722:arm64. Preparing to unpack .../32-libabsl20240722_20240722.0-3_arm64.deb ... Unpacking libabsl20240722:arm64 (20240722.0-3) ... Selecting previously unselected package libaec0:arm64. Preparing to unpack .../33-libaec0_1.1.3-1+b1_arm64.deb ... Unpacking libaec0:arm64 (1.1.3-1+b1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../34-libbrotli1_1.1.0-2+b7_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b7) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../35-libcom-err2_1.47.2-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2-1+b1) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../36-libkrb5support0_1.21.3-5_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-5) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../37-libk5crypto3_1.21.3-5_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../38-libkeyutils1_1.6.3-6_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../39-libkrb5-3_1.21.3-5_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../40-libgssapi-krb5-2_1.21.3-5_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-5) ... Selecting previously unselected package libidn2-0:arm64. Preparing to unpack .../41-libidn2-0_2.3.8-2_arm64.deb ... Unpacking libidn2-0:arm64 (2.3.8-2) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../42-libsasl2-modules-db_2.1.28+dfsg1-9_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../43-libsasl2-2_2.1.28+dfsg1-9_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libldap2:arm64. Preparing to unpack .../44-libldap2_2.6.9+dfsg-2_arm64.deb ... Unpacking libldap2:arm64 (2.6.9+dfsg-2) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../45-libnghttp2-14_1.64.0-1.1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.64.0-1.1) ... Selecting previously unselected package libnghttp3-9:arm64. Preparing to unpack .../46-libnghttp3-9_1.8.0-1_arm64.deb ... Unpacking libnghttp3-9:arm64 (1.8.0-1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../47-libpsl5t64_0.21.2-1.1+b1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1+b1) ... Selecting previously unselected package libp11-kit0:arm64. Preparing to unpack .../48-libp11-kit0_0.25.5-3_arm64.deb ... Unpacking libp11-kit0:arm64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:arm64. Preparing to unpack .../49-libtasn1-6_4.20.0-2_arm64.deb ... Unpacking libtasn1-6:arm64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:arm64. Preparing to unpack .../50-libgnutls30t64_3.8.9-2_arm64.deb ... Unpacking libgnutls30t64:arm64 (3.8.9-2) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../51-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:arm64. Preparing to unpack .../52-libssh2-1t64_1.11.1-1_arm64.deb ... Unpacking libssh2-1t64:arm64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:arm64. Preparing to unpack .../53-libcurl4t64_8.13.0-5_arm64.deb ... Unpacking libcurl4t64:arm64 (8.13.0-5) ... Selecting previously unselected package libsz2:arm64. Preparing to unpack .../54-libsz2_1.1.3-1+b1_arm64.deb ... Unpacking libsz2:arm64 (1.1.3-1+b1) ... Selecting previously unselected package libhdf5-310:arm64. Preparing to unpack .../55-libhdf5-310_1.14.5+repack-3_arm64.deb ... Unpacking libhdf5-310:arm64 (1.14.5+repack-3) ... Selecting previously unselected package libmbedcrypto16:arm64. Preparing to unpack .../56-libmbedcrypto16_3.6.3-1_arm64.deb ... Unpacking libmbedcrypto16:arm64 (3.6.3-1) ... Selecting previously unselected package libmbedx509-7:arm64. Preparing to unpack .../57-libmbedx509-7_3.6.3-1_arm64.deb ... Unpacking libmbedx509-7:arm64 (3.6.3-1) ... Selecting previously unselected package libmbedtls21:arm64. Preparing to unpack .../58-libmbedtls21_3.6.3-1_arm64.deb ... Unpacking libmbedtls21:arm64 (3.6.3-1) ... Selecting previously unselected package ncbi-vdb-data. Preparing to unpack .../59-ncbi-vdb-data_3.2.1+dfsg-2_all.deb ... Unpacking ncbi-vdb-data (3.2.1+dfsg-2) ... Selecting previously unselected package libncbi-vdb3:arm64. Preparing to unpack .../60-libncbi-vdb3_3.2.1+dfsg-2_arm64.deb ... Unpacking libncbi-vdb3:arm64 (3.2.1+dfsg-2) ... Selecting previously unselected package libncbi-wvdb3:arm64. Preparing to unpack .../61-libncbi-wvdb3_3.2.1+dfsg-2_arm64.deb ... Unpacking libncbi-wvdb3:arm64 (3.2.1+dfsg-2) ... Selecting previously unselected package libre2-11:arm64. Preparing to unpack .../62-libre2-11_20240702-3+b1_arm64.deb ... Unpacking libre2-11:arm64 (20240702-3+b1) ... Selecting previously unselected package sra-toolkit. Preparing to unpack .../63-sra-toolkit_3.2.1+dfsg-4_arm64.deb ... Unpacking sra-toolkit (3.2.1+dfsg-4) ... Setting up media-types (13.0.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libkeyutils1:arm64 (1.6.3-6) ... Setting up bsdextrautils (2.41-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up bwa (0.7.18-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libbrotli1:arm64 (1.1.0-2+b7) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up libnghttp2-14:arm64 (1.64.0-1.1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-8) ... Setting up libcom-err2:arm64 (1.47.2-1+b1) ... Setting up file (1:5.46-5) ... Setting up libabsl20240722:arm64 (20240722.0-3) ... Setting up libaec0:arm64 (1.1.3-1+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-5) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-9) ... Setting up tzdata (2025b-2) ... Current default time zone: 'Etc/UTC' Local time is now: Sat May 30 01:12:07 UTC 2026. Universal Time is now: Sat May 30 01:12:07 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-1) ... Setting up libk5crypto3:arm64 (1.21.3-5) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-9) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:arm64 (1.8.0-1) ... Setting up libffi8:arm64 (3.4.8-2) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up ncbi-vdb-data (3.2.1+dfsg-2) ... Setting up netbase (6.5) ... Setting up libkrb5-3:arm64 (1.21.3-5) ... Setting up libmbedcrypto16:arm64 (3.6.3-1) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up libldap2:arm64 (2.6.9+dfsg-2) ... Setting up libsz2:arm64 (1.1.3-1+b1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up libre2-11:arm64 (20240702-3+b1) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up libidn2-0:arm64 (2.3.8-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libmbedx509-7:arm64 (3.6.3-1) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up libmbedtls21:arm64 (3.6.3-1) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libpython3.13-stdlib:arm64 (3.13.3-2) ... Setting up libpython3-stdlib:arm64 (3.13.3-1) ... Setting up libgnutls30t64:arm64 (3.8.9-2) ... Setting up python3.13 (3.13.3-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up libncbi-vdb3:arm64 (3.2.1+dfsg-2) ... Setting up python3 (3.13.3-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libncbi-wvdb3:arm64 (3.2.1+dfsg-2) ... Setting up dh-python (6.20250414) ... Setting up libcurl4t64:arm64 (8.13.0-5) ... Setting up debhelper (13.24.2) ... Setting up libhdf5-310:arm64 (1.14.5+repack-3) ... Setting up sra-toolkit (3.2.1+dfsg-4) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/seqsero-1.0.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqsero_1.0.1+dfsg-6_source.changes dpkg-buildpackage: info: source package seqsero dpkg-buildpackage: info: source version 1.0.1+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 dh_clean debian/rules binary dh binary --with python3 dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/seqsero/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_python3 I: dh_python3 tools:114: replacing shebang in debian/seqsero/usr/share/seqsero/SeqSero.py dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/seqsero-1.0.1+dfsg' dh_compress --exclude=.pdf make[1]: Leaving directory '/build/reproducible-path/seqsero-1.0.1+dfsg' debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/seqsero-1.0.1+dfsg' dh_fixperms find debian -name split_interleaved_fastq.pl -exec chmod +x \{\} \; make[1]: Leaving directory '/build/reproducible-path/seqsero-1.0.1+dfsg' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package seqsero: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'seqsero' in '../seqsero_1.0.1+dfsg-6_arm64.deb'. dpkg-genbuildinfo --build=binary -O../seqsero_1.0.1+dfsg-6_arm64.buildinfo dpkg-genchanges --build=binary -O../seqsero_1.0.1+dfsg-6_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2794956 and its subdirectories I: Current time: Fri May 29 13:12:17 -12 2026 I: pbuilder-time-stamp: 1780103537 Sat May 30 01:12:17 UTC 2026 I: Signing ./b1/seqsero_1.0.1+dfsg-6_arm64.buildinfo as seqsero_1.0.1+dfsg-6_arm64.buildinfo.asc Sat May 30 01:12:17 UTC 2026 I: Signed ./b1/seqsero_1.0.1+dfsg-6_arm64.buildinfo as ./b1/seqsero_1.0.1+dfsg-6_arm64.buildinfo.asc Sat May 30 01:12:17 UTC 2026 - build #1 for seqsero/unstable/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Sat May 30 01:12:17 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-vEZoUysN, removing. /srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Apr 26 18:49 b1 drwxr-xr-x 2 jenkins jenkins 4096 Apr 26 18:48 b2 -rw------- 1 jenkins jenkins 3160 Apr 26 18:48 rbuildlog.DlCnPTK -rw-r--r-- 1 jenkins jenkins 2024 Sep 29 2022 seqsero_1.0.1+dfsg-6.dsc /srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3/b1: total 460 -rw-r--r-- 1 jenkins jenkins 35920 Apr 26 18:49 build.log -rw-r--r-- 1 jenkins jenkins 43084 Apr 26 18:49 seqsero_1.0.1+dfsg-6.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2024 Apr 26 18:49 seqsero_1.0.1+dfsg-6.dsc -rw-r--r-- 1 jenkins jenkins 6066 Apr 26 18:49 seqsero_1.0.1+dfsg-6_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 6948 Apr 26 18:49 seqsero_1.0.1+dfsg-6_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1315 Apr 26 18:49 seqsero_1.0.1+dfsg-6_arm64.changes -rw-r--r-- 1 jenkins jenkins 358268 Apr 26 18:49 seqsero_1.0.1+dfsg-6_arm64.deb -rw-r--r-- 1 jenkins jenkins 1481 Apr 26 18:49 seqsero_1.0.1+dfsg-6_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3/b2: total 0 Sat Apr 26 18:49:18 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri May 29 13:11:48 -12 2026 I: pbuilder-time-stamp: 1780103508 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [seqsero_1.0.1+dfsg-6.dsc] I: copying [./seqsero_1.0.1+dfsg.orig.tar.xz] I: copying [./seqsero_1.0.1+dfsg-6.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./seqsero_1.0.1+dfsg-6.dsc: unsupported subcommand dpkg-source: info: extracting seqsero in seqsero-1.0.1+dfsg dpkg-source: info: unpacking seqsero_1.0.1+dfsg.orig.tar.xz dpkg-source: info: unpacking seqsero_1.0.1+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_perl_interpreter.patch dpkg-source: info: applying fix_usage.patch dpkg-source: info: applying 2to3.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2794956/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='f5c8745f4a654c889c90e924577a35ef' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2794956' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3/pbuilderrc_ko2j --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3/b1 --logfile b1/build.log seqsero_1.0.1+dfsg-6.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2794956/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, bwa, sra-toolkit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on bwa; however: Package bwa is not installed. pbuilder-satisfydepends-dummy depends on sra-toolkit; however: Package sra-toolkit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} bwa{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libabsl20240722{a} libaec0{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhdf5-310{a} libidn2-0{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libmbedcrypto16{a} libmbedtls21{a} libmbedx509-7{a} libncbi-vdb3{a} libncbi-wvdb3{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libre2-11{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libsz2{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} ncbi-vdb-data{a} netbase{a} po-debconf{a} python3{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sra-toolkit{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx med-config publicsuffix wget 0 packages upgraded, 77 newly installed, 0 to remove and 0 not upgraded. Need to get 33.1 MB of archives. After unpacking 129 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.3-2 [855 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.7.1-1 [93.3 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.3-2 [1998 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.3-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025b-2 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.8-2 [21.3 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.3-2 [1890 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.3-2 [751 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.3-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.3-1 [28.2 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41-4 [93.9 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 bwa arm64 0.7.18-1 [198 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 37 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.4 [629 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20250414 [116 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libabsl20240722 arm64 20240722.0-3 [453 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libaec0 arm64 1.1.3-1+b1 [22.5 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1+b1 [24.2 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 53 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-2 [107 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-2 [179 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1.1 [71.4 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.8.0-1 [63.2 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.13.0-5 [349 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libsz2 arm64 1.1.3-1+b1 [8044 B] Get: 69 http://deb.debian.org/debian unstable/main arm64 libhdf5-310 arm64 1.14.5+repack-3 [1155 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libmbedcrypto16 arm64 3.6.3-1 [343 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libmbedx509-7 arm64 3.6.3-1 [148 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libmbedtls21 arm64 3.6.3-1 [224 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 ncbi-vdb-data all 3.2.1+dfsg-2 [88.5 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 libncbi-vdb3 arm64 3.2.1+dfsg-2 [1096 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libncbi-wvdb3 arm64 3.2.1+dfsg-2 [1097 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 libre2-11 arm64 20240702-3+b1 [149 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 sra-toolkit arm64 3.2.1+dfsg-4 [6996 kB] Fetched 33.1 MB in 1s (56.0 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.3-2_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.3-2) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.7.1-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.3-2_arm64.deb ... Unpacking python3.13-minimal (3.13.3-2) ... Setting up libpython3.13-minimal:arm64 (3.13.3-2) ... Setting up libexpat1:arm64 (2.7.1-1) ... Setting up python3.13-minimal (3.13.3-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20287 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.3-1_arm64.deb ... Unpacking python3-minimal (3.13.3-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-2_all.deb ... Unpacking tzdata (2025b-2) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.4.8-2_arm64.deb ... Unpacking libffi8:arm64 (3.4.8-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.2-6_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.3-2_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.3-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.3-2_arm64.deb ... Unpacking python3.13 (3.13.3-2) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.13.3-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.13.3-1) ... Setting up python3-minimal (3.13.3-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21299 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.3-1_arm64.deb ... Unpacking python3 (3.13.3-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../03-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.41-4_arm64.deb ... Unpacking bsdextrautils (2.41-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../09-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-8_arm64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package bwa. Preparing to unpack .../16-bwa_0.7.18-1_arm64.deb ... Unpacking bwa (0.7.18-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../23-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../25-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../26-libxml2_2.12.7+dfsg+really2.9.14-0.4_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.23.1-1_arm64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package dh-python. Preparing to unpack .../31-dh-python_6.20250414_all.deb ... Unpacking dh-python (6.20250414) ... Selecting previously unselected package libabsl20240722:arm64. Preparing to unpack .../32-libabsl20240722_20240722.0-3_arm64.deb ... Unpacking libabsl20240722:arm64 (20240722.0-3) ... Selecting previously unselected package libaec0:arm64. Preparing to unpack .../33-libaec0_1.1.3-1+b1_arm64.deb ... Unpacking libaec0:arm64 (1.1.3-1+b1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../34-libbrotli1_1.1.0-2+b7_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b7) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../35-libcom-err2_1.47.2-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2-1+b1) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../36-libkrb5support0_1.21.3-5_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-5) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../37-libk5crypto3_1.21.3-5_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../38-libkeyutils1_1.6.3-6_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../39-libkrb5-3_1.21.3-5_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../40-libgssapi-krb5-2_1.21.3-5_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-5) ... Selecting previously unselected package libidn2-0:arm64. Preparing to unpack .../41-libidn2-0_2.3.8-2_arm64.deb ... Unpacking libidn2-0:arm64 (2.3.8-2) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../42-libsasl2-modules-db_2.1.28+dfsg1-9_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../43-libsasl2-2_2.1.28+dfsg1-9_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libldap2:arm64. Preparing to unpack .../44-libldap2_2.6.9+dfsg-2_arm64.deb ... Unpacking libldap2:arm64 (2.6.9+dfsg-2) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../45-libnghttp2-14_1.64.0-1.1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.64.0-1.1) ... Selecting previously unselected package libnghttp3-9:arm64. Preparing to unpack .../46-libnghttp3-9_1.8.0-1_arm64.deb ... Unpacking libnghttp3-9:arm64 (1.8.0-1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../47-libpsl5t64_0.21.2-1.1+b1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1+b1) ... Selecting previously unselected package libp11-kit0:arm64. Preparing to unpack .../48-libp11-kit0_0.25.5-3_arm64.deb ... Unpacking libp11-kit0:arm64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:arm64. Preparing to unpack .../49-libtasn1-6_4.20.0-2_arm64.deb ... Unpacking libtasn1-6:arm64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:arm64. Preparing to unpack .../50-libgnutls30t64_3.8.9-2_arm64.deb ... Unpacking libgnutls30t64:arm64 (3.8.9-2) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../51-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:arm64. Preparing to unpack .../52-libssh2-1t64_1.11.1-1_arm64.deb ... Unpacking libssh2-1t64:arm64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:arm64. Preparing to unpack .../53-libcurl4t64_8.13.0-5_arm64.deb ... Unpacking libcurl4t64:arm64 (8.13.0-5) ... Selecting previously unselected package libsz2:arm64. Preparing to unpack .../54-libsz2_1.1.3-1+b1_arm64.deb ... Unpacking libsz2:arm64 (1.1.3-1+b1) ... Selecting previously unselected package libhdf5-310:arm64. Preparing to unpack .../55-libhdf5-310_1.14.5+repack-3_arm64.deb ... Unpacking libhdf5-310:arm64 (1.14.5+repack-3) ... Selecting previously unselected package libmbedcrypto16:arm64. Preparing to unpack .../56-libmbedcrypto16_3.6.3-1_arm64.deb ... Unpacking libmbedcrypto16:arm64 (3.6.3-1) ... Selecting previously unselected package libmbedx509-7:arm64. Preparing to unpack .../57-libmbedx509-7_3.6.3-1_arm64.deb ... Unpacking libmbedx509-7:arm64 (3.6.3-1) ... Selecting previously unselected package libmbedtls21:arm64. Preparing to unpack .../58-libmbedtls21_3.6.3-1_arm64.deb ... Unpacking libmbedtls21:arm64 (3.6.3-1) ... Selecting previously unselected package ncbi-vdb-data. Preparing to unpack .../59-ncbi-vdb-data_3.2.1+dfsg-2_all.deb ... Unpacking ncbi-vdb-data (3.2.1+dfsg-2) ... Selecting previously unselected package libncbi-vdb3:arm64. Preparing to unpack .../60-libncbi-vdb3_3.2.1+dfsg-2_arm64.deb ... Unpacking libncbi-vdb3:arm64 (3.2.1+dfsg-2) ... Selecting previously unselected package libncbi-wvdb3:arm64. Preparing to unpack .../61-libncbi-wvdb3_3.2.1+dfsg-2_arm64.deb ... Unpacking libncbi-wvdb3:arm64 (3.2.1+dfsg-2) ... Selecting previously unselected package libre2-11:arm64. Preparing to unpack .../62-libre2-11_20240702-3+b1_arm64.deb ... Unpacking libre2-11:arm64 (20240702-3+b1) ... Selecting previously unselected package sra-toolkit. Preparing to unpack .../63-sra-toolkit_3.2.1+dfsg-4_arm64.deb ... Unpacking sra-toolkit (3.2.1+dfsg-4) ... Setting up media-types (13.0.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libkeyutils1:arm64 (1.6.3-6) ... Setting up bsdextrautils (2.41-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up bwa (0.7.18-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libbrotli1:arm64 (1.1.0-2+b7) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up libnghttp2-14:arm64 (1.64.0-1.1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-8) ... Setting up libcom-err2:arm64 (1.47.2-1+b1) ... Setting up file (1:5.46-5) ... Setting up libabsl20240722:arm64 (20240722.0-3) ... Setting up libaec0:arm64 (1.1.3-1+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-5) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-9) ... Setting up tzdata (2025b-2) ... Current default time zone: 'Etc/UTC' Local time is now: Sat May 30 01:12:07 UTC 2026. Universal Time is now: Sat May 30 01:12:07 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-1) ... Setting up libk5crypto3:arm64 (1.21.3-5) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-9) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:arm64 (1.8.0-1) ... Setting up libffi8:arm64 (3.4.8-2) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up ncbi-vdb-data (3.2.1+dfsg-2) ... Setting up netbase (6.5) ... Setting up libkrb5-3:arm64 (1.21.3-5) ... Setting up libmbedcrypto16:arm64 (3.6.3-1) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up libldap2:arm64 (2.6.9+dfsg-2) ... Setting up libsz2:arm64 (1.1.3-1+b1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up libre2-11:arm64 (20240702-3+b1) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up libidn2-0:arm64 (2.3.8-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libmbedx509-7:arm64 (3.6.3-1) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up libmbedtls21:arm64 (3.6.3-1) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libpython3.13-stdlib:arm64 (3.13.3-2) ... Setting up libpython3-stdlib:arm64 (3.13.3-1) ... Setting up libgnutls30t64:arm64 (3.8.9-2) ... Setting up python3.13 (3.13.3-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up libncbi-vdb3:arm64 (3.2.1+dfsg-2) ... Setting up python3 (3.13.3-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libncbi-wvdb3:arm64 (3.2.1+dfsg-2) ... Setting up dh-python (6.20250414) ... Setting up libcurl4t64:arm64 (8.13.0-5) ... Setting up debhelper (13.24.2) ... Setting up libhdf5-310:arm64 (1.14.5+repack-3) ... Setting up sra-toolkit (3.2.1+dfsg-4) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/seqsero-1.0.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqsero_1.0.1+dfsg-6_source.changes dpkg-buildpackage: info: source package seqsero dpkg-buildpackage: info: source version 1.0.1+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 dh_clean debian/rules binary dh binary --with python3 dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/seqsero/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_python3 I: dh_python3 tools:114: replacing shebang in debian/seqsero/usr/share/seqsero/SeqSero.py dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/seqsero-1.0.1+dfsg' dh_compress --exclude=.pdf make[1]: Leaving directory '/build/reproducible-path/seqsero-1.0.1+dfsg' debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/seqsero-1.0.1+dfsg' dh_fixperms find debian -name split_interleaved_fastq.pl -exec chmod +x \{\} \; make[1]: Leaving directory '/build/reproducible-path/seqsero-1.0.1+dfsg' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package seqsero: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'seqsero' in '../seqsero_1.0.1+dfsg-6_arm64.deb'. dpkg-genbuildinfo --build=binary -O../seqsero_1.0.1+dfsg-6_arm64.buildinfo dpkg-genchanges --build=binary -O../seqsero_1.0.1+dfsg-6_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2794956 and its subdirectories I: Current time: Fri May 29 13:12:17 -12 2026 I: pbuilder-time-stamp: 1780103537 Sat Apr 26 18:49:19 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Sat Apr 26 18:49:19 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Sat Apr 26 18:49:19 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Sat Apr 26 18:49:19 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-HVEN2q' ==================================================================================== Sat Apr 26 18:49:21 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "2 seqsero unstable /srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3 1.0.1+dfsg-6" as arguments. Sat Apr 26 18:49:21 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-gJ1sBZfR" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Apr 26 18:49:21 UTC 2025 I: Downloading source for unstable/seqsero=1.0.1+dfsg-6 Reading package lists... NOTICE: 'seqsero' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/seqsero.git Please use: git clone https://salsa.debian.org/med-team/seqsero.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 401 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main seqsero 1.0.1+dfsg-6 (dsc) [2024 B] Get:2 http://deb.debian.org/debian unstable/main seqsero 1.0.1+dfsg-6 (tar) [356 kB] Get:3 http://deb.debian.org/debian unstable/main seqsero 1.0.1+dfsg-6 (diff) [43.1 kB] Fetched 401 kB in 0s (20.3 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'seqsero' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/seqsero.git Please use: git clone https://salsa.debian.org/med-team/seqsero.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 401 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main seqsero 1.0.1+dfsg-6 (dsc) [2024 B] Get:2 http://deb.debian.org/debian unstable/main seqsero 1.0.1+dfsg-6 (tar) [356 kB] Get:3 http://deb.debian.org/debian unstable/main seqsero 1.0.1+dfsg-6 (diff) [43.1 kB] Fetched 401 kB in 0s (20.3 MB/s) Download complete and in download only mode ============================================================================= Re-Building seqsero in unstable on arm64 on codethink04-arm64 now. Date: Sat Apr 26 19:49:21 BST 2025 Date UTC: Sat Apr 26 18:49:21 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3 + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3/pbuilderrc_6Grn + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' seqsero = debian-installer -o seqsero = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' seqsero = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3/pbuilderrc_6Grn --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3/b2 --logfile b2/build.log seqsero_1.0.1+dfsg-6.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Apr 27 08:49:21 +14 2025 I: pbuilder-time-stamp: 1745693361 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [seqsero_1.0.1+dfsg-6.dsc] I: copying [./seqsero_1.0.1+dfsg.orig.tar.xz] I: copying [./seqsero_1.0.1+dfsg-6.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./seqsero_1.0.1+dfsg-6.dsc: unsupported subcommand dpkg-source: info: extracting seqsero in seqsero-1.0.1+dfsg dpkg-source: info: unpacking seqsero_1.0.1+dfsg.orig.tar.xz dpkg-source: info: unpacking seqsero_1.0.1+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_perl_interpreter.patch dpkg-source: info: applying fix_usage.patch dpkg-source: info: applying 2to3.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/298060/tmp/hooks/D01_modify_environment starting debug: Running on codethink04-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Apr 26 18:49 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/298060/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/298060/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=94142e48f9b54d98966280d240903637 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=298060 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3/pbuilderrc_6Grn --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3/b2 --logfile b2/build.log seqsero_1.0.1+dfsg-6.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/298060/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, bwa, sra-toolkit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on bwa; however: Package bwa is not installed. pbuilder-satisfydepends-dummy depends on sra-toolkit; however: Package sra-toolkit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} bwa{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libabsl20240722{a} libaec0{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhdf5-310{a} libidn2-0{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libmbedcrypto16{a} libmbedtls21{a} libmbedx509-7{a} libncbi-vdb3{a} libncbi-wvdb3{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libre2-11{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libsz2{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} ncbi-vdb-data{a} netbase{a} po-debconf{a} python3{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sra-toolkit{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx med-config publicsuffix wget 0 packages upgraded, 77 newly installed, 0 to remove and 0 not upgraded. Need to get 33.1 MB of archives. After unpacking 129 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.3-2 [855 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.7.1-1 [93.3 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.3-2 [1998 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.3-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025b-2 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.8-2 [21.3 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.3-2 [1890 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.3-2 [751 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.3-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.3-1 [28.2 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41-4 [93.9 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 bwa arm64 0.7.18-1 [198 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 37 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.4 [629 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20250414 [116 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libabsl20240722 arm64 20240722.0-3 [453 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libaec0 arm64 1.1.3-1+b1 [22.5 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1+b1 [24.2 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 53 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-2 [107 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-2 [179 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1.1 [71.4 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.8.0-1 [63.2 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.13.0-5 [349 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libsz2 arm64 1.1.3-1+b1 [8044 B] Get: 69 http://deb.debian.org/debian unstable/main arm64 libhdf5-310 arm64 1.14.5+repack-3 [1155 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libmbedcrypto16 arm64 3.6.3-1 [343 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libmbedx509-7 arm64 3.6.3-1 [148 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libmbedtls21 arm64 3.6.3-1 [224 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 ncbi-vdb-data all 3.2.1+dfsg-2 [88.5 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 libncbi-vdb3 arm64 3.2.1+dfsg-2 [1096 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libncbi-wvdb3 arm64 3.2.1+dfsg-2 [1097 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 libre2-11 arm64 20240702-3+b1 [149 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 sra-toolkit arm64 3.2.1+dfsg-4 [6996 kB] Fetched 33.1 MB in 0s (150 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.3-2_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.3-2) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.7.1-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.3-2_arm64.deb ... Unpacking python3.13-minimal (3.13.3-2) ... Setting up libpython3.13-minimal:arm64 (3.13.3-2) ... Setting up libexpat1:arm64 (2.7.1-1) ... Setting up python3.13-minimal (3.13.3-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20287 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.3-1_arm64.deb ... Unpacking python3-minimal (3.13.3-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-2_all.deb ... Unpacking tzdata (2025b-2) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.4.8-2_arm64.deb ... Unpacking libffi8:arm64 (3.4.8-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.2-6_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.3-2_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.3-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.3-2_arm64.deb ... Unpacking python3.13 (3.13.3-2) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.13.3-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.13.3-1) ... Setting up python3-minimal (3.13.3-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21299 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.3-1_arm64.deb ... Unpacking python3 (3.13.3-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../03-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.41-4_arm64.deb ... Unpacking bsdextrautils (2.41-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../09-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-8_arm64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package bwa. Preparing to unpack .../16-bwa_0.7.18-1_arm64.deb ... Unpacking bwa (0.7.18-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../23-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../25-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../26-libxml2_2.12.7+dfsg+really2.9.14-0.4_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.23.1-1_arm64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package dh-python. Preparing to unpack .../31-dh-python_6.20250414_all.deb ... Unpacking dh-python (6.20250414) ... Selecting previously unselected package libabsl20240722:arm64. Preparing to unpack .../32-libabsl20240722_20240722.0-3_arm64.deb ... Unpacking libabsl20240722:arm64 (20240722.0-3) ... Selecting previously unselected package libaec0:arm64. Preparing to unpack .../33-libaec0_1.1.3-1+b1_arm64.deb ... Unpacking libaec0:arm64 (1.1.3-1+b1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../34-libbrotli1_1.1.0-2+b7_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b7) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../35-libcom-err2_1.47.2-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2-1+b1) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../36-libkrb5support0_1.21.3-5_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-5) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../37-libk5crypto3_1.21.3-5_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../38-libkeyutils1_1.6.3-6_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../39-libkrb5-3_1.21.3-5_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../40-libgssapi-krb5-2_1.21.3-5_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-5) ... Selecting previously unselected package libidn2-0:arm64. Preparing to unpack .../41-libidn2-0_2.3.8-2_arm64.deb ... Unpacking libidn2-0:arm64 (2.3.8-2) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../42-libsasl2-modules-db_2.1.28+dfsg1-9_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../43-libsasl2-2_2.1.28+dfsg1-9_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libldap2:arm64. Preparing to unpack .../44-libldap2_2.6.9+dfsg-2_arm64.deb ... Unpacking libldap2:arm64 (2.6.9+dfsg-2) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../45-libnghttp2-14_1.64.0-1.1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.64.0-1.1) ... Selecting previously unselected package libnghttp3-9:arm64. Preparing to unpack .../46-libnghttp3-9_1.8.0-1_arm64.deb ... Unpacking libnghttp3-9:arm64 (1.8.0-1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../47-libpsl5t64_0.21.2-1.1+b1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1+b1) ... Selecting previously unselected package libp11-kit0:arm64. Preparing to unpack .../48-libp11-kit0_0.25.5-3_arm64.deb ... Unpacking libp11-kit0:arm64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:arm64. Preparing to unpack .../49-libtasn1-6_4.20.0-2_arm64.deb ... Unpacking libtasn1-6:arm64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:arm64. Preparing to unpack .../50-libgnutls30t64_3.8.9-2_arm64.deb ... Unpacking libgnutls30t64:arm64 (3.8.9-2) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../51-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:arm64. Preparing to unpack .../52-libssh2-1t64_1.11.1-1_arm64.deb ... Unpacking libssh2-1t64:arm64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:arm64. Preparing to unpack .../53-libcurl4t64_8.13.0-5_arm64.deb ... Unpacking libcurl4t64:arm64 (8.13.0-5) ... Selecting previously unselected package libsz2:arm64. Preparing to unpack .../54-libsz2_1.1.3-1+b1_arm64.deb ... Unpacking libsz2:arm64 (1.1.3-1+b1) ... Selecting previously unselected package libhdf5-310:arm64. Preparing to unpack .../55-libhdf5-310_1.14.5+repack-3_arm64.deb ... Unpacking libhdf5-310:arm64 (1.14.5+repack-3) ... Selecting previously unselected package libmbedcrypto16:arm64. Preparing to unpack .../56-libmbedcrypto16_3.6.3-1_arm64.deb ... Unpacking libmbedcrypto16:arm64 (3.6.3-1) ... Selecting previously unselected package libmbedx509-7:arm64. Preparing to unpack .../57-libmbedx509-7_3.6.3-1_arm64.deb ... Unpacking libmbedx509-7:arm64 (3.6.3-1) ... Selecting previously unselected package libmbedtls21:arm64. Preparing to unpack .../58-libmbedtls21_3.6.3-1_arm64.deb ... Unpacking libmbedtls21:arm64 (3.6.3-1) ... Selecting previously unselected package ncbi-vdb-data. Preparing to unpack .../59-ncbi-vdb-data_3.2.1+dfsg-2_all.deb ... Unpacking ncbi-vdb-data (3.2.1+dfsg-2) ... Selecting previously unselected package libncbi-vdb3:arm64. Preparing to unpack .../60-libncbi-vdb3_3.2.1+dfsg-2_arm64.deb ... Unpacking libncbi-vdb3:arm64 (3.2.1+dfsg-2) ... Selecting previously unselected package libncbi-wvdb3:arm64. Preparing to unpack .../61-libncbi-wvdb3_3.2.1+dfsg-2_arm64.deb ... Unpacking libncbi-wvdb3:arm64 (3.2.1+dfsg-2) ... Selecting previously unselected package libre2-11:arm64. Preparing to unpack .../62-libre2-11_20240702-3+b1_arm64.deb ... Unpacking libre2-11:arm64 (20240702-3+b1) ... Selecting previously unselected package sra-toolkit. Preparing to unpack .../63-sra-toolkit_3.2.1+dfsg-4_arm64.deb ... Unpacking sra-toolkit (3.2.1+dfsg-4) ... Setting up media-types (13.0.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libkeyutils1:arm64 (1.6.3-6) ... Setting up bsdextrautils (2.41-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up bwa (0.7.18-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libbrotli1:arm64 (1.1.0-2+b7) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up libnghttp2-14:arm64 (1.64.0-1.1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-8) ... Setting up libcom-err2:arm64 (1.47.2-1+b1) ... Setting up file (1:5.46-5) ... Setting up libabsl20240722:arm64 (20240722.0-3) ... Setting up libaec0:arm64 (1.1.3-1+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-5) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-9) ... Setting up tzdata (2025b-2) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Apr 26 18:49:41 UTC 2025. Universal Time is now: Sat Apr 26 18:49:41 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-1) ... Setting up libk5crypto3:arm64 (1.21.3-5) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-9) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:arm64 (1.8.0-1) ... Setting up libffi8:arm64 (3.4.8-2) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up ncbi-vdb-data (3.2.1+dfsg-2) ... Setting up netbase (6.5) ... Setting up libkrb5-3:arm64 (1.21.3-5) ... Setting up libmbedcrypto16:arm64 (3.6.3-1) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up libldap2:arm64 (2.6.9+dfsg-2) ... Setting up libsz2:arm64 (1.1.3-1+b1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up libre2-11:arm64 (20240702-3+b1) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up libidn2-0:arm64 (2.3.8-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libmbedx509-7:arm64 (3.6.3-1) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up libmbedtls21:arm64 (3.6.3-1) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libpython3.13-stdlib:arm64 (3.13.3-2) ... Setting up libpython3-stdlib:arm64 (3.13.3-1) ... Setting up libgnutls30t64:arm64 (3.8.9-2) ... Setting up python3.13 (3.13.3-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up libncbi-vdb3:arm64 (3.2.1+dfsg-2) ... Setting up python3 (3.13.3-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libncbi-wvdb3:arm64 (3.2.1+dfsg-2) ... Setting up dh-python (6.20250414) ... Setting up libcurl4t64:arm64 (8.13.0-5) ... Setting up debhelper (13.24.2) ... Setting up libhdf5-310:arm64 (1.14.5+repack-3) ... Setting up sra-toolkit (3.2.1+dfsg-4) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/298060/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/298060/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/seqsero-1.0.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../seqsero_1.0.1+dfsg-6_source.changes dpkg-buildpackage: info: source package seqsero dpkg-buildpackage: info: source version 1.0.1+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 dh_clean debian/rules binary dh binary --with python3 dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/seqsero/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_python3 I: dh_python3 tools:114: replacing shebang in debian/seqsero/usr/share/seqsero/SeqSero.py dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/seqsero-1.0.1+dfsg' dh_compress --exclude=.pdf make[1]: Leaving directory '/build/reproducible-path/seqsero-1.0.1+dfsg' debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/seqsero-1.0.1+dfsg' dh_fixperms find debian -name split_interleaved_fastq.pl -exec chmod +x \{\} \; make[1]: Leaving directory '/build/reproducible-path/seqsero-1.0.1+dfsg' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package seqsero: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'seqsero' in '../seqsero_1.0.1+dfsg-6_arm64.deb'. dpkg-genbuildinfo --build=binary -O../seqsero_1.0.1+dfsg-6_arm64.buildinfo dpkg-genchanges --build=binary -O../seqsero_1.0.1+dfsg-6_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/298060/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/298060/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/298060 and its subdirectories I: Current time: Sun Apr 27 08:49:54 +14 2025 I: pbuilder-time-stamp: 1745693394 + false + set +x Sat Apr 26 18:49:54 UTC 2025 I: Signing ./b2/seqsero_1.0.1+dfsg-6_arm64.buildinfo as seqsero_1.0.1+dfsg-6_arm64.buildinfo.asc Sat Apr 26 18:49:54 UTC 2025 I: Signed ./b2/seqsero_1.0.1+dfsg-6_arm64.buildinfo as ./b2/seqsero_1.0.1+dfsg-6_arm64.buildinfo.asc Sat Apr 26 18:49:54 UTC 2025 - build #2 for seqsero/unstable/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Sat Apr 26 18:49:54 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-gJ1sBZfR, removing. /srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3: total 52 drwxr-xr-x 2 jenkins jenkins 4096 Apr 26 18:49 b1 drwxr-xr-x 2 jenkins jenkins 4096 Apr 26 18:49 b2 -rw------- 1 jenkins jenkins 39381 Apr 26 18:49 rbuildlog.DlCnPTK -rw-r--r-- 1 jenkins jenkins 2024 Sep 29 2022 seqsero_1.0.1+dfsg-6.dsc /srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3/b1: total 464 -rw-r--r-- 1 jenkins jenkins 35920 Apr 26 18:49 build.log -rw-r--r-- 1 jenkins jenkins 43084 Apr 26 18:49 seqsero_1.0.1+dfsg-6.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2024 Apr 26 18:49 seqsero_1.0.1+dfsg-6.dsc -rw-r--r-- 1 jenkins jenkins 6066 Apr 26 18:49 seqsero_1.0.1+dfsg-6_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 6948 Apr 26 18:49 seqsero_1.0.1+dfsg-6_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1315 Apr 26 18:49 seqsero_1.0.1+dfsg-6_arm64.changes -rw-r--r-- 1 jenkins jenkins 358268 Apr 26 18:49 seqsero_1.0.1+dfsg-6_arm64.deb -rw-r--r-- 1 jenkins jenkins 1481 Apr 26 18:49 seqsero_1.0.1+dfsg-6_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3/b2: total 464 -rw-r--r-- 1 jenkins jenkins 37854 Apr 26 18:49 build.log -rw-r--r-- 1 jenkins jenkins 43084 Apr 26 18:49 seqsero_1.0.1+dfsg-6.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2024 Apr 26 18:49 seqsero_1.0.1+dfsg-6.dsc -rw-r--r-- 1 jenkins jenkins 6066 Apr 26 18:49 seqsero_1.0.1+dfsg-6_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 6948 Apr 26 18:49 seqsero_1.0.1+dfsg-6_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1315 Apr 26 18:49 seqsero_1.0.1+dfsg-6_arm64.changes -rw-r--r-- 1 jenkins jenkins 358268 Apr 26 18:49 seqsero_1.0.1+dfsg-6_arm64.deb -rw-r--r-- 1 jenkins jenkins 1481 Apr 26 18:49 seqsero_1.0.1+dfsg-6_source.changes Sat Apr 26 18:49:55 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Sat Apr 26 18:49:55 UTC 2025 I: seqsero_1.0.1+dfsg-6_arm64.changes: Format: 1.8 Date: Thu, 29 Sep 2022 15:36:15 +0200 Source: seqsero Binary: seqsero Architecture: arm64 Version: 1.0.1+dfsg-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: seqsero - Salmonella serotyping from genome sequencing data Changes: seqsero (1.0.1+dfsg-6) unstable; urgency=medium . * Fix watch file * Architecture: any While the package is actually architecture all its dependencies are exclusively fulfilled on amd64. To avoid debci from picking this package the architecture is specified as any. * Standards-Version: 4.6.1 (routine-update) Checksums-Sha1: 21e62dd8268a9513d7358acd3dfeef59ee79458b 6066 seqsero_1.0.1+dfsg-6_arm64.buildinfo cf6074cf9cdb1959839690a5ccec9e9bfff4ea83 358268 seqsero_1.0.1+dfsg-6_arm64.deb Checksums-Sha256: d9e96974d527ba929e4c292034ec0f256134362e91dc70a22a0c349d304e0e15 6066 seqsero_1.0.1+dfsg-6_arm64.buildinfo 2d55e0d5cf537b2fa58b5ab2170d3ae776b19eb1dd6f0827f04a868004fa194d 358268 seqsero_1.0.1+dfsg-6_arm64.deb Files: 4fa16d6d5d4a7781b4afbae31800a3f0 6066 science optional seqsero_1.0.1+dfsg-6_arm64.buildinfo 29b7cdf589d9be7844438dc1d88dffba 358268 science optional seqsero_1.0.1+dfsg-6_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/seqsero_1.0.1+dfsg-6.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/seqsero_1.0.1+dfsg-6.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/seqsero_1.0.1+dfsg-6.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/seqsero_1.0.1+dfsg-6.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/arm64/seqsero_1.0.1+dfsg-6_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/seqsero_1.0.1+dfsg-6.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-04-26 18:49:18.719810523 +0000 +++ b2/build.log 2025-04-26 18:49:55.063033716 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri May 29 13:11:48 -12 2026 -I: pbuilder-time-stamp: 1780103508 +I: Current time: Sun Apr 27 08:49:21 +14 2025 +I: pbuilder-time-stamp: 1745693361 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: applying 2to3.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2794956/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/298060/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 26 18:49 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/298060/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/298060/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='f5c8745f4a654c889c90e924577a35ef' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2794956' - PS1='# ' - PS2='> ' + INVOCATION_ID=94142e48f9b54d98966280d240903637 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=298060 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3/pbuilderrc_ko2j --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3/b1 --logfile b1/build.log seqsero_1.0.1+dfsg-6.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3/pbuilderrc_6Grn --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3/b2 --logfile b2/build.log seqsero_1.0.1+dfsg-6.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2794956/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/298060/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -192,7 +224,7 @@ Get: 75 http://deb.debian.org/debian unstable/main arm64 libncbi-wvdb3 arm64 3.2.1+dfsg-2 [1097 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 libre2-11 arm64 20240702-3+b1 [149 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 sra-toolkit arm64 3.2.1+dfsg-4 [6996 kB] -Fetched 33.1 MB in 1s (56.0 MB/s) +Fetched 33.1 MB in 0s (150 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19953 files and directories currently installed.) @@ -459,8 +491,8 @@ Setting up tzdata (2025b-2) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat May 30 01:12:07 UTC 2026. -Universal Time is now: Sat May 30 01:12:07 UTC 2026. +Local time is now: Sat Apr 26 18:49:41 UTC 2025. +Universal Time is now: Sat Apr 26 18:49:41 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... @@ -527,7 +559,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/seqsero-1.0.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqsero_1.0.1+dfsg-6_source.changes +I: user script /srv/workspace/pbuilder/298060/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/298060/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/seqsero-1.0.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../seqsero_1.0.1+dfsg-6_source.changes dpkg-buildpackage: info: source package seqsero dpkg-buildpackage: info: source version 1.0.1+dfsg-6 dpkg-buildpackage: info: source distribution unstable @@ -581,12 +617,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/298060/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/298060/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2794956 and its subdirectories -I: Current time: Fri May 29 13:12:17 -12 2026 -I: pbuilder-time-stamp: 1780103537 +I: removing directory /srv/workspace/pbuilder/298060 and its subdirectories +I: Current time: Sun Apr 27 08:49:54 +14 2025 +I: pbuilder-time-stamp: 1745693394 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/seqsero_1.0.1+dfsg-6.diff: 66.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/seqsero_1.0.1+dfsg-6.diff.gz b2/build.log: 78.9% -- replaced with stdout Compressing the 1st log... b1/build.log: 79.6% -- replaced with stdout Sat Apr 26 18:49:57 UTC 2025 I: diffoscope 294 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_seqsero_unstable_arm64_1745693397 + touch /var/log/reproducible-builds/diffoscope_stamp_seqsero_unstable_arm64_1745693397 + RESULT=0 + systemd-run '--description=diffoscope on seqsero/1.0.1+dfsg-6 in unstable/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_6-90429 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3 --run-session -c jenkins-reproducible-unstable-diffoscope-d4a86bdf-5526-481f-8302-a544feefa06b -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3/dbd-tmp-bd81A4N ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3/seqsero_1.0.1+dfsg-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3/seqsero_1.0.1+dfsg-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3/seqsero_1.0.1+dfsg-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3/b1/seqsero_1.0.1+dfsg-6_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3/b2/seqsero_1.0.1+dfsg-6_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_6-90429.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3/seqsero_1.0.1+dfsg-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3/seqsero_1.0.1+dfsg-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3/seqsero_1.0.1+dfsg-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3/b1/seqsero_1.0.1+dfsg-6_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Cutbq3A3/b2/seqsero_1.0.1+dfsg-6_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.004s) 0.004s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 249ms CPU time consumed: 248ms ___ ___ __ _ ___ ___ _ __ ___ / __|/ _ \/ _` / __|/ _ \ '__/ _ \ \__ \ __/ (_| \__ \ __/ | | (_) | |___/\___|\__, |___/\___|_| \___/ |_| Sat Apr 26 18:49:57 UTC 2025 I: diffoscope 294 found no differences in the changes files, and a .buildinfo file also exists. Sat Apr 26 18:49:57 UTC 2025 I: seqsero from unstable built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-04-26 18:49:58] INFO: Starting at 2025-04-26 18:49:58.320473 [2025-04-26 18:49:58] INFO: Generating the pages of 1 package(s) [2025-04-26 18:50:00] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/arm64/seqsero didn't produce a buildlog, even though it has been built. [2025-04-26 18:50:00] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/seqsero_1.0.1+dfsg-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/seqsero_1.0.1+dfsg-6.diff.gz is missing [2025-04-26 18:50:00] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/seqsero_1.0.1+dfsg-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/seqsero_1.0.1+dfsg-6.diff.gz is missing [2025-04-26 18:50:00] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/seqsero_1.0.1+dfsg-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/seqsero_1.0.1+dfsg-6.diff.gz is missing [2025-04-26 18:50:00] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/seqsero_1.0.1+dfsg-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/seqsero_1.0.1+dfsg-6.diff.gz is missing [2025-04-26 18:50:00] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/seqsero_1.0.1+dfsg-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/seqsero_1.0.1+dfsg-6.diff.gz is missing [2025-04-26 18:50:00] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/seqsero_1.0.1+dfsg-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/seqsero_1.0.1+dfsg-6.diff.gz is missing [2025-04-26 18:50:00] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/seqsero_1.0.1+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/seqsero_1.0.1+dfsg-4.diff.gz is missing [2025-04-26 18:50:00] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/seqsero_1.0.1+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/seqsero_1.0.1+dfsg-4.diff.gz is missing [2025-04-26 18:50:00] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/seqsero_1.0.1+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/seqsero_1.0.1+dfsg-4.diff.gz is missing [2025-04-26 18:50:00] INFO: Finished at 2025-04-26 18:50:00.473978, took: 0:00:02.153513 Sat Apr 26 18:50:00 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/arm64/seqsero.html Sat Apr 26 18:50:00 UTC 2025 I: Submitting .buildinfo files to external archives: Sat Apr 26 18:50:00 UTC 2025 I: Submitting 8.0K b1/seqsero_1.0.1+dfsg-6_arm64.buildinfo.asc Sat Apr 26 18:50:30 UTC 2025 E: Could not submit buildinfo from b1 to http://buildinfo.debian.net/api/submit Sat Apr 26 18:50:30 UTC 2025 I: Submitting 8.0K b2/seqsero_1.0.1+dfsg-6_arm64.buildinfo.asc https://buildinfo.debian.net/6cc0158c10e1c45cf9974e4e82dddf8fbb290b81/seqsero_1.0.1+dfsg-6_arm64 Sat Apr 26 18:50:48 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Apr 26 18:50:48 UTC 2025 I: Done submitting .buildinfo files. Sat Apr 26 18:50:48 UTC 2025 I: Removing signed seqsero_1.0.1+dfsg-6_arm64.buildinfo.asc files: removed './b1/seqsero_1.0.1+dfsg-6_arm64.buildinfo.asc' removed './b2/seqsero_1.0.1+dfsg-6_arm64.buildinfo.asc' 1745693448 arm64 unstable seqsero Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/seqsero_1.0.1+dfsg-6.rbuild.log: 76.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/seqsero_1.0.1+dfsg-6.rbuild.log.gz [2025-04-26 18:50:49] INFO: Starting at 2025-04-26 18:50:49.301218 [2025-04-26 18:50:49] INFO: Generating the pages of 1 package(s) [2025-04-26 18:50:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/seqsero_1.0.1+dfsg-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/seqsero_1.0.1+dfsg-6.diff.gz is missing [2025-04-26 18:50:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/seqsero_1.0.1+dfsg-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/seqsero_1.0.1+dfsg-6.diff.gz is missing [2025-04-26 18:50:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/seqsero_1.0.1+dfsg-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/seqsero_1.0.1+dfsg-6.diff.gz is missing [2025-04-26 18:50:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/seqsero_1.0.1+dfsg-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/seqsero_1.0.1+dfsg-6.diff.gz is missing [2025-04-26 18:50:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/seqsero_1.0.1+dfsg-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/seqsero_1.0.1+dfsg-6.diff.gz is missing [2025-04-26 18:50:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/seqsero_1.0.1+dfsg-6.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/seqsero_1.0.1+dfsg-6.diff.gz is missing [2025-04-26 18:50:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/seqsero_1.0.1+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/seqsero_1.0.1+dfsg-4.diff.gz is missing [2025-04-26 18:50:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/seqsero_1.0.1+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/seqsero_1.0.1+dfsg-4.diff.gz is missing [2025-04-26 18:50:50] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/seqsero_1.0.1+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/seqsero_1.0.1+dfsg-4.diff.gz is missing [2025-04-26 18:50:50] INFO: Finished at 2025-04-26 18:50:50.625543, took: 0:00:01.324330 All cleanup done. Sat Apr 26 18:50:50 UTC 2025 - total duration: 0h 1m 31s. Sat Apr 26 18:50:50 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-CU38ioxg, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 2min 24.814s CPU time consumed: 10.090s