Running as unit: rb-build-arm64_6-90855.service ==================================================================================== Mon Apr 28 06:44:28 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_6) on jenkins, called using "codethink03-arm64 codethink04-arm64" as arguments. Mon Apr 28 06:44:28 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-FiqgJKjL" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Apr 28 06:44:28 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Mon Apr 28 06:44:28 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-TQoxVM' Mon Apr 28 06:44:29 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Mon Apr 28 06:44:29 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-4kXxeP' ok, let's check if perm is building anywhere yet… ok, perm is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of perm in trixie on arm64 on jenkins now. 1st build will be done on codethink03-arm64.debian.net. 2nd build will be done on codethink04-arm64.debian.net. ============================================================================= Mon Apr 28 06:44:44 UTC 2025 I: starting to build perm/trixie/arm64 on jenkins on '2025-04-28 06:44' Mon Apr 28 06:44:44 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_6/90855/console.log 1745822684 arm64 trixie perm Mon Apr 28 06:44:44 UTC 2025 I: Downloading source for trixie/perm=0.4.0-8 --2025-04-28 06:44:44-- http://deb.debian.org/debian/pool/main/p/perm/perm_0.4.0-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1885 (1.8K) [text/prs.lines.tag] Saving to: ‘perm_0.4.0-8.dsc’ 0K . 100% 250M=0s 2025-04-28 06:44:45 (250 MB/s) - ‘perm_0.4.0-8.dsc’ saved [1885/1885] --2025-04-28 06:44:44-- http://deb.debian.org/debian/pool/main/p/perm/perm_0.4.0-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1885 (1.8K) [text/prs.lines.tag] Saving to: ‘perm_0.4.0-8.dsc’ 0K . 100% 250M=0s 2025-04-28 06:44:45 (250 MB/s) - ‘perm_0.4.0-8.dsc’ saved [1885/1885] Mon Apr 28 06:44:45 UTC 2025 I: perm_0.4.0-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: perm Binary: perm Architecture: any Version: 0.4.0-8 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/perm Vcs-Git: https://salsa.debian.org/med-team/perm.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libbsd-dev Package-List: perm deb science optional arch=any Checksums-Sha1: b89025fe3ac6d6ab48c7a8a898a592119eb62037 114025 perm_0.4.0.orig.tar.gz fd06162fba40aeb53945bd5b6f43b72c8eaf2799 11528 perm_0.4.0-8.debian.tar.xz Checksums-Sha256: 31384ffe5abc1eabd68d6d5a331da761891a99da9e8502b1db8f0178e5df6b18 114025 perm_0.4.0.orig.tar.gz c7b5bb0abf38ac11d245f079b5a3763f722c97543fb78c0086f5457d72562f23 11528 perm_0.4.0-8.debian.tar.xz Files: 302f5828a0f15b7ae4c85390e8fe747d 114025 perm_0.4.0.orig.tar.gz 629e3729d7e11a5d187643f2d0f9b4a8 11528 perm_0.4.0-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmGOGAARHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHYmQ/+LQ1YPks29fRVE+q0LCd4Q3sqr5Seh42y 1pyoiSEL3u1Ai3W4ue0aScr5GPfe8o/BDQ9T5VxzD7IeEdKk2JX3tKTLu8RX1Q7o U8cwtqO6+TCccfnE/AWTl0rUL4Zym0ze43wK+pTdu7b8Y9SilEsTkRVNR37ony7X AsALz7DaDo6+m22wh25C1t1MZoEPq3uWgkI/QOIg+nMDUH57oi9GIJjh2ViF2jz7 9FaDgWY4ylXQJL9VyrGL94Sf51DYRRyYtTCrMNBkpGs0pT7UAvd0T9Yh/q1bEM0t QxVGXXl6o95UF+FLaTTYEFFznBRj2JUnCG7YXDqkl61aIFDlSxj5hSsT02Naz3UH wswwl5cGq6HeE2PVQTXeIYRBqT3kJNesfqbRTIoGE2mhknv63K7vPfBhV9lJA9RD E0TD5ko/QzwhY1h7hgyg3Moo6dbJvI8AlozUBJCMLZLKPqXH5kqRmlGcuLTbKBGj q5Pty0ikLf/rfxaltpFBSl2dGwfiOcKo6FU7LTsdxHq2MPj5ehjUO7r+N7DU/RGt FQfa/pKq9y08BFegr1A6zRVQsFTEh8a2LjHAdSMKMV15cYvcrKepsptoik+l+Sq6 svHFOmjMRTgsQzV85TPn9jzq//W6YkKUBucGDyZR5hhG+qmPFRJC/XR1VXPQCVEQ 1k5dF3ZDFFs= =yBNI -----END PGP SIGNATURE----- Mon Apr 28 06:44:45 UTC 2025 I: Checking whether the package is not for us Mon Apr 28 06:44:45 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Mon Apr 28 06:44:45 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Mon Apr 28 06:44:45 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Mon Apr 28 06:44:45 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-lMzfXc' ==================================================================================== Sun May 31 13:07:46 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "1 perm trixie /srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr 0.4.0-8" as arguments. Sun May 31 13:07:46 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-U8NUhP8l" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun May 31 13:07:46 UTC 2026 I: Downloading source for trixie/perm=0.4.0-8 Reading package lists... NOTICE: 'perm' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/perm.git Please use: git clone https://salsa.debian.org/med-team/perm.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 127 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main perm 0.4.0-8 (dsc) [1885 B] Get:2 http://deb.debian.org/debian trixie/main perm 0.4.0-8 (tar) [114 kB] Get:3 http://deb.debian.org/debian trixie/main perm 0.4.0-8 (diff) [11.5 kB] Fetched 127 kB in 0s (2003 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'perm' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/perm.git Please use: git clone https://salsa.debian.org/med-team/perm.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 127 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main perm 0.4.0-8 (dsc) [1885 B] Get:2 http://deb.debian.org/debian trixie/main perm 0.4.0-8 (tar) [114 kB] Get:3 http://deb.debian.org/debian trixie/main perm 0.4.0-8 (diff) [11.5 kB] Fetched 127 kB in 0s (2003 kB/s) Download complete and in download only mode ============================================================================= Building perm in trixie on arm64 on codethink03-arm64 now. Date: Sun May 31 14:07:47 BST 2026 Date UTC: Sun May 31 13:07:47 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun May 31 01:07:47 -12 2026 I: pbuilder-time-stamp: 1780232867 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [perm_0.4.0-8.dsc] I: copying [./perm_0.4.0.orig.tar.gz] I: copying [./perm_0.4.0-8.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./perm_0.4.0-8.dsc: unsupported subcommand dpkg-source: info: extracting perm in perm-0.4.0 dpkg-source: info: unpacking perm_0.4.0.orig.tar.gz dpkg-source: info: unpacking perm_0.4.0-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying make_dynamic_executable.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying gcc7.patch dpkg-source: info: applying fix-buffer-overflow.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1564009/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='ae08f9231d2245d3849a25c9dac4e2c4' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1564009' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr/pbuilderrc_4e3y --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr/b1 --logfile b1/build.log perm_0.4.0-8.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1564009/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libbsd-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19954 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libbsd-dev; however: Package libbsd-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd-dev{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libmd-dev{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 11.2 MB of archives. After unpacking 45.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.41-4 [93.9 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-7 [285 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.4 [629 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libmd-dev arm64 1.1.0-2+b1 [53.3 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libbsd-dev arm64 0.12.2-2 [257 kB] Fetched 11.2 MB in 0s (77.7 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19954 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41-4_arm64.deb ... Unpacking bsdextrautils (2.41-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-7_arm64.deb ... Unpacking m4 (1.4.19-7) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../23-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.4_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-1_arm64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package libmd-dev:arm64. Preparing to unpack .../29-libmd-dev_1.1.0-2+b1_arm64.deb ... Unpacking libmd-dev:arm64 (1.1.0-2+b1) ... Selecting previously unselected package libbsd-dev:arm64. Preparing to unpack .../30-libbsd-dev_0.12.2-2_arm64.deb ... Unpacking libbsd-dev:arm64 (0.12.2-2) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-7) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-1) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libmd-dev:arm64 (1.1.0-2+b1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up libbsd-dev:arm64 (0.12.2-2) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/perm-0.4.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../perm_0.4.0-8_source.changes dpkg-buildpackage: info: source package perm dpkg-buildpackage: info: source version 0.4.0-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/perm-0.4.0' rm -f *.o *.exe cut out perm perm.tar.gz make[1]: Leaving directory '/build/reproducible-path/perm-0.4.0' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/perm-0.4.0' make clean make[2]: Entering directory '/build/reproducible-path/perm-0.4.0' rm -f *.o *.exe cut out perm perm.tar.gz make[2]: Leaving directory '/build/reproducible-path/perm-0.4.0' g++ -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/perm-0.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -fopenmp -o perm -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/perm-0.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -fopenmp AlignmentsQ.cpp Filename.cpp GenomeNTdata.cpp ReadInBits.cpp PerM.cpp chromosomeNTdata.cpp bitsOperationUtil.cpp FileOutputBuffer.cpp HashIndexT.cpp ReadInBitsSet.cpp SeedPattern.cpp boolFlagArray.cpp GenomeInBits.cpp Index_Table.cpp ReadsMapping.cpp PairedReadsMapping.cpp ShortReadUtil.cpp chdir.cpp Genome_Index.cpp MismatchScores.cpp stdafx.cpp Flags.cpp ParseReadsOpts.cpp ColorSpaceRead.cpp Genome_Index_Table.cpp ParameterList.cpp ReadsMappingStats.cpp FileInputBuffer.cpp Genome_Index_TableQ.cpp ReadsQualScores.cpp ChrIndex2GeneName.cpp ReadsFileParser.cpp PairedReadsSet.cpp MappingResult.cpp refInBinFile.cpp LongReadsSet.cpp -lm -lstdc++ -lbsd -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ chromosomeNTdata.cpp: In member function 'unsigned int CchromosomeNTdata::removedNonACGTNBaseAndCollectGeneName()': chromosomeNTdata.cpp:211:41: warning: '%d' directive writing between 1 and 11 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] 211 | sprintf(caGeneName, "%s:%d", caGeneName, (int)this->geneVec.table.size()); | ^~ chromosomeNTdata.cpp:211:37: note: using the range [-2147483648, 2147483647] for directive argument 211 | sprintf(caGeneName, "%s:%d", caGeneName, (int)this->geneVec.table.size()); | ^~~~~~~ In file included from /usr/include/stdio.h:970, from /usr/include/c++/14/cstdio:42, from /usr/include/c++/14/ext/string_conversions.h:45, from /usr/include/c++/14/bits/basic_string.h:4154, from /usr/include/c++/14/string:54, from ChrIndex2GeneName.h:2, from chromosomeNTdata.h:5, from chromosomeNTdata.cpp:1: In function 'int sprintf(char*, const char*, ...)', inlined from 'unsigned int CchromosomeNTdata::removedNonACGTNBaseAndCollectGeneName()' at chromosomeNTdata.cpp:211:24: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 3 and 2060 bytes into a destination of size 2048 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: warning: '__builtin___sprintf_chk' argument 5 overlaps destination object 'caGeneName' [-Wrestrict] chromosomeNTdata.cpp: In member function 'unsigned int CchromosomeNTdata::removedNonACGTNBaseAndCollectGeneName()': chromosomeNTdata.cpp:207:18: note: destination object referenced by 'restrict'-qualified argument 1 was declared here 207 | char caGeneName[MAX_LINE]; | ^~~~~~~~~~ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ ReadsMapping.cpp: In constructor 'CReadsMapping::CReadsMapping(MappingOpts)': ReadsMapping.cpp:102:46: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 102 | sprintf(this->opt.outputDir, "%s/", P.outputDir); | ^ In file included from /usr/include/stdio.h:970, from /usr/include/c++/14/cstdio:42, from /usr/include/c++/14/ext/string_conversions.h:45, from /usr/include/c++/14/bits/basic_string.h:4154, from /usr/include/c++/14/string:54, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from FileOutputBuffer.h:2, from PairedReadsSet.h:4, from LongReadsSet.h:2, from ReadsMapping.h:8, from ReadsMapping.cpp:1: In function 'int sprintf(char*, const char*, ...)', inlined from 'CReadsMapping::CReadsMapping(MappingOpts)' at ReadsMapping.cpp:102:20: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 2 and 4097 bytes into a destination of size 4096 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ReadsMapping.cpp: In function 'std::string getOutputFileNamePrefix(const char*, const CGenome_Index_TableQ&, MappingOpts&)': ReadsMapping.cpp:594:33: warning: '%s' directive writing up to 4095 bytes into a region of size 2048 [-Wformat-overflow=] 594 | sprintf(outputPrefixStr, "%s%s_%c_%u_%d",\ | ^~ In function 'int sprintf(char*, const char*, ...)', inlined from 'std::string getOutputFileNamePrefix(const char*, const CGenome_Index_TableQ&, MappingOpts&)' at ReadsMapping.cpp:594:12: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 7 or more bytes (assuming 4102) into a destination of size 2048 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ReadsMapping.cpp: In member function 'std::string CReadsMapping::getMappingFileN(const char*, const CGenome_Index_TableQ&)': ReadsMapping.cpp:730:30: warning: '%s' directive writing up to 4095 bytes into a region of size 2048 [-Wformat-overflow=] 730 | sprintf(outputPath, "%s%s", this->opt.outputDir, this->opt.outputFileN); | ^~ In function 'int sprintf(char*, const char*, ...)', inlined from 'std::string CReadsMapping::getMappingFileN(const char*, const CGenome_Index_TableQ&)' at ReadsMapping.cpp:730:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 1 and 8191 bytes into a destination of size 2048 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ReadsMapping.cpp: In member function 'std::string CReadsMapping::getMappingFileN(const char*, const CGenome_Index_TableQ&)': ReadsMapping.cpp:594:31: warning: '%s' directive writing up to 4095 bytes into a region of size 2048 [-Wformat-overflow=] 594 | sprintf(outputPrefixStr, "%s%s_%c_%u_%d",\ | ^~ In function 'int sprintf(char*, const char*, ...)', inlined from 'std::string getOutputFileNamePrefix(const char*, const CGenome_Index_TableQ&, MappingOpts&)' at ReadsMapping.cpp:594:12, inlined from 'std::string CReadsMapping::getMappingFileN(const char*, const CGenome_Index_TableQ&)' at ReadsMapping.cpp:715:88: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 7 and 8216 bytes into a destination of size 2048 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ReadsMapping.cpp: In function 'void getSingleMappingSeqAndQ4SOLiD(const CGenome_Index_TableQ&, CAlignmentsQ&, CMappingResult&, bool)': ReadsMapping.cpp:907:27: warning: ' CS:Z:' directive writing 6 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] 907 | sprintf(m.TAG, "%s\tCS:Z:%s\tCQ:Z:%s", m.TAG, m.caRead, m.QScores); | ^~~~~~~ In function 'int sprintf(char*, const char*, ...)', inlined from 'void getQualityScore4SOLiD(unsigned int, CReadInBits&, CAlignmentsQ&, CMappingResult&, bool)' at ReadsMapping.cpp:907:16, inlined from 'void getSingleMappingSeqAndQ4SOLiD(const CGenome_Index_TableQ&, CAlignmentsQ&, CMappingResult&, bool)' at ReadsMapping.cpp:947:26: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 13 and 4876 bytes into a destination of size 4096 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: warning: '__builtin___sprintf_chk' argument 5 overlaps destination object 'm' [-Wrestrict] ReadsMapping.cpp: In function 'void getSingleMappingSeqAndQ4SOLiD(const CGenome_Index_TableQ&, CAlignmentsQ&, CMappingResult&, bool)': ReadsMapping.cpp:928:73: note: destination object referenced by 'restrict'-qualified argument 1 was declared here 928 | (const CGenome_Index_TableQ& table, CAlignmentsQ& aQue, CMappingResult& m, bool samFormat) | ~~~~~~~~~~~~~~~~^ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ ParameterList.cpp: In member function 'void MappingOpts::setDefaults()': ParameterList.cpp:31:9: warning: unused variable 'mismatchScoreThreshold' [-Wunused-variable] 31 | int mismatchScoreThreshold = -1; // No filtering by sum of mismatch score | ^~~~~~~~~~~~~~~~~~~~~~ ParameterList.cpp: In member function 'void ParameterList::setDefaults()': ParameterList.cpp:93:21: warning: ignoring return value of 'bool std::operator==(const __cxx11::basic_string<_CharT, _Traits, _Allocator>&, const _CharT*) [with _CharT = char; _Traits = char_traits; _Alloc = allocator]', declared with attribute 'nodiscard' [-Wunused-result] 93 | this->refFormat == "unknown"; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/14/string:54, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from stdafx.h:6, from ParseReadsOpts.h:2, from ParameterList.h:6, from ParameterList.cpp:4: /usr/include/c++/14/bits/basic_string.h:3772:5: note: declared here 3772 | operator==(const basic_string<_CharT, _Traits, _Alloc>& __lhs, | ^~~~~~~~ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ Genome_Index_TableQ.cpp: In member function 'unsigned int CGenome_Index_TableQ::extendAlignment(CAlignmentsQ&, CReadInBits) const': Genome_Index_TableQ.cpp:364:10: warning: variable 'extendForward' set but not used [-Wunused-but-set-variable] 364 | bool extendForward = true; | ^~~~~~~~~~~~~ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ #g++ -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/perm-0.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -fopenmp -o perm *.o -lm -lstdc++ -lbsd make[1]: Leaving directory '/build/reproducible-path/perm-0.4.0' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/perm-0.4.0' # make[1]: Leaving directory '/build/reproducible-path/perm-0.4.0' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'perm' in '../perm_0.4.0-8_arm64.deb'. dpkg-deb: building package 'perm-dbgsym' in '../perm-dbgsym_0.4.0-8_arm64.deb'. dpkg-genbuildinfo --build=binary -O../perm_0.4.0-8_arm64.buildinfo dpkg-genchanges --build=binary -O../perm_0.4.0-8_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1564009 and its subdirectories I: Current time: Sun May 31 01:08:45 -12 2026 I: pbuilder-time-stamp: 1780232925 Sun May 31 13:08:45 UTC 2026 I: Signing ./b1/perm_0.4.0-8_arm64.buildinfo as perm_0.4.0-8_arm64.buildinfo.asc Sun May 31 13:08:45 UTC 2026 I: Signed ./b1/perm_0.4.0-8_arm64.buildinfo as ./b1/perm_0.4.0-8_arm64.buildinfo.asc Sun May 31 13:08:45 UTC 2026 - build #1 for perm/trixie/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Sun May 31 13:08:45 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-U8NUhP8l, removing. /srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Apr 28 06:45 b1 drwxr-xr-x 2 jenkins jenkins 4096 Apr 28 06:44 b2 -rw-r--r-- 1 jenkins jenkins 1885 Nov 12 2021 perm_0.4.0-8.dsc -rw------- 1 jenkins jenkins 2969 Apr 28 06:44 rbuildlog.w6ShXMz /srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr/b1: total 1192 -rw-r--r-- 1 jenkins jenkins 38630 Apr 28 06:45 build.log -rw-r--r-- 1 jenkins jenkins 1008612 Apr 28 06:45 perm-dbgsym_0.4.0-8_arm64.deb -rw-r--r-- 1 jenkins jenkins 11528 Apr 28 06:45 perm_0.4.0-8.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1885 Apr 28 06:45 perm_0.4.0-8.dsc -rw-r--r-- 1 jenkins jenkins 4882 Apr 28 06:45 perm_0.4.0-8_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 5764 Apr 28 06:45 perm_0.4.0-8_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1512 Apr 28 06:45 perm_0.4.0-8_arm64.changes -rw-r--r-- 1 jenkins jenkins 117532 Apr 28 06:45 perm_0.4.0-8_arm64.deb -rw-r--r-- 1 jenkins jenkins 1364 Apr 28 06:45 perm_0.4.0-8_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr/b2: total 0 Mon Apr 28 06:45:46 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun May 31 01:07:47 -12 2026 I: pbuilder-time-stamp: 1780232867 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [perm_0.4.0-8.dsc] I: copying [./perm_0.4.0.orig.tar.gz] I: copying [./perm_0.4.0-8.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./perm_0.4.0-8.dsc: unsupported subcommand dpkg-source: info: extracting perm in perm-0.4.0 dpkg-source: info: unpacking perm_0.4.0.orig.tar.gz dpkg-source: info: unpacking perm_0.4.0-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying make_dynamic_executable.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying gcc7.patch dpkg-source: info: applying fix-buffer-overflow.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1564009/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='ae08f9231d2245d3849a25c9dac4e2c4' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1564009' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr/pbuilderrc_4e3y --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr/b1 --logfile b1/build.log perm_0.4.0-8.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1564009/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libbsd-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19954 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libbsd-dev; however: Package libbsd-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd-dev{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libmd-dev{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 11.2 MB of archives. After unpacking 45.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.41-4 [93.9 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-7 [285 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.4 [629 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libmd-dev arm64 1.1.0-2+b1 [53.3 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libbsd-dev arm64 0.12.2-2 [257 kB] Fetched 11.2 MB in 0s (77.7 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19954 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41-4_arm64.deb ... Unpacking bsdextrautils (2.41-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-7_arm64.deb ... Unpacking m4 (1.4.19-7) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../23-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.4_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-1_arm64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package libmd-dev:arm64. Preparing to unpack .../29-libmd-dev_1.1.0-2+b1_arm64.deb ... Unpacking libmd-dev:arm64 (1.1.0-2+b1) ... Selecting previously unselected package libbsd-dev:arm64. Preparing to unpack .../30-libbsd-dev_0.12.2-2_arm64.deb ... Unpacking libbsd-dev:arm64 (0.12.2-2) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-7) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-1) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libmd-dev:arm64 (1.1.0-2+b1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up libbsd-dev:arm64 (0.12.2-2) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/perm-0.4.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../perm_0.4.0-8_source.changes dpkg-buildpackage: info: source package perm dpkg-buildpackage: info: source version 0.4.0-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/perm-0.4.0' rm -f *.o *.exe cut out perm perm.tar.gz make[1]: Leaving directory '/build/reproducible-path/perm-0.4.0' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/perm-0.4.0' make clean make[2]: Entering directory '/build/reproducible-path/perm-0.4.0' rm -f *.o *.exe cut out perm perm.tar.gz make[2]: Leaving directory '/build/reproducible-path/perm-0.4.0' g++ -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/perm-0.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -fopenmp -o perm -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/perm-0.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -fopenmp AlignmentsQ.cpp Filename.cpp GenomeNTdata.cpp ReadInBits.cpp PerM.cpp chromosomeNTdata.cpp bitsOperationUtil.cpp FileOutputBuffer.cpp HashIndexT.cpp ReadInBitsSet.cpp SeedPattern.cpp boolFlagArray.cpp GenomeInBits.cpp Index_Table.cpp ReadsMapping.cpp PairedReadsMapping.cpp ShortReadUtil.cpp chdir.cpp Genome_Index.cpp MismatchScores.cpp stdafx.cpp Flags.cpp ParseReadsOpts.cpp ColorSpaceRead.cpp Genome_Index_Table.cpp ParameterList.cpp ReadsMappingStats.cpp FileInputBuffer.cpp Genome_Index_TableQ.cpp ReadsQualScores.cpp ChrIndex2GeneName.cpp ReadsFileParser.cpp PairedReadsSet.cpp MappingResult.cpp refInBinFile.cpp LongReadsSet.cpp -lm -lstdc++ -lbsd -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ chromosomeNTdata.cpp: In member function 'unsigned int CchromosomeNTdata::removedNonACGTNBaseAndCollectGeneName()': chromosomeNTdata.cpp:211:41: warning: '%d' directive writing between 1 and 11 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] 211 | sprintf(caGeneName, "%s:%d", caGeneName, (int)this->geneVec.table.size()); | ^~ chromosomeNTdata.cpp:211:37: note: using the range [-2147483648, 2147483647] for directive argument 211 | sprintf(caGeneName, "%s:%d", caGeneName, (int)this->geneVec.table.size()); | ^~~~~~~ In file included from /usr/include/stdio.h:970, from /usr/include/c++/14/cstdio:42, from /usr/include/c++/14/ext/string_conversions.h:45, from /usr/include/c++/14/bits/basic_string.h:4154, from /usr/include/c++/14/string:54, from ChrIndex2GeneName.h:2, from chromosomeNTdata.h:5, from chromosomeNTdata.cpp:1: In function 'int sprintf(char*, const char*, ...)', inlined from 'unsigned int CchromosomeNTdata::removedNonACGTNBaseAndCollectGeneName()' at chromosomeNTdata.cpp:211:24: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 3 and 2060 bytes into a destination of size 2048 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: warning: '__builtin___sprintf_chk' argument 5 overlaps destination object 'caGeneName' [-Wrestrict] chromosomeNTdata.cpp: In member function 'unsigned int CchromosomeNTdata::removedNonACGTNBaseAndCollectGeneName()': chromosomeNTdata.cpp:207:18: note: destination object referenced by 'restrict'-qualified argument 1 was declared here 207 | char caGeneName[MAX_LINE]; | ^~~~~~~~~~ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ ReadsMapping.cpp: In constructor 'CReadsMapping::CReadsMapping(MappingOpts)': ReadsMapping.cpp:102:46: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 102 | sprintf(this->opt.outputDir, "%s/", P.outputDir); | ^ In file included from /usr/include/stdio.h:970, from /usr/include/c++/14/cstdio:42, from /usr/include/c++/14/ext/string_conversions.h:45, from /usr/include/c++/14/bits/basic_string.h:4154, from /usr/include/c++/14/string:54, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from FileOutputBuffer.h:2, from PairedReadsSet.h:4, from LongReadsSet.h:2, from ReadsMapping.h:8, from ReadsMapping.cpp:1: In function 'int sprintf(char*, const char*, ...)', inlined from 'CReadsMapping::CReadsMapping(MappingOpts)' at ReadsMapping.cpp:102:20: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 2 and 4097 bytes into a destination of size 4096 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ReadsMapping.cpp: In function 'std::string getOutputFileNamePrefix(const char*, const CGenome_Index_TableQ&, MappingOpts&)': ReadsMapping.cpp:594:33: warning: '%s' directive writing up to 4095 bytes into a region of size 2048 [-Wformat-overflow=] 594 | sprintf(outputPrefixStr, "%s%s_%c_%u_%d",\ | ^~ In function 'int sprintf(char*, const char*, ...)', inlined from 'std::string getOutputFileNamePrefix(const char*, const CGenome_Index_TableQ&, MappingOpts&)' at ReadsMapping.cpp:594:12: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 7 or more bytes (assuming 4102) into a destination of size 2048 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ReadsMapping.cpp: In member function 'std::string CReadsMapping::getMappingFileN(const char*, const CGenome_Index_TableQ&)': ReadsMapping.cpp:730:30: warning: '%s' directive writing up to 4095 bytes into a region of size 2048 [-Wformat-overflow=] 730 | sprintf(outputPath, "%s%s", this->opt.outputDir, this->opt.outputFileN); | ^~ In function 'int sprintf(char*, const char*, ...)', inlined from 'std::string CReadsMapping::getMappingFileN(const char*, const CGenome_Index_TableQ&)' at ReadsMapping.cpp:730:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 1 and 8191 bytes into a destination of size 2048 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ReadsMapping.cpp: In member function 'std::string CReadsMapping::getMappingFileN(const char*, const CGenome_Index_TableQ&)': ReadsMapping.cpp:594:31: warning: '%s' directive writing up to 4095 bytes into a region of size 2048 [-Wformat-overflow=] 594 | sprintf(outputPrefixStr, "%s%s_%c_%u_%d",\ | ^~ In function 'int sprintf(char*, const char*, ...)', inlined from 'std::string getOutputFileNamePrefix(const char*, const CGenome_Index_TableQ&, MappingOpts&)' at ReadsMapping.cpp:594:12, inlined from 'std::string CReadsMapping::getMappingFileN(const char*, const CGenome_Index_TableQ&)' at ReadsMapping.cpp:715:88: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 7 and 8216 bytes into a destination of size 2048 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ReadsMapping.cpp: In function 'void getSingleMappingSeqAndQ4SOLiD(const CGenome_Index_TableQ&, CAlignmentsQ&, CMappingResult&, bool)': ReadsMapping.cpp:907:27: warning: ' CS:Z:' directive writing 6 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] 907 | sprintf(m.TAG, "%s\tCS:Z:%s\tCQ:Z:%s", m.TAG, m.caRead, m.QScores); | ^~~~~~~ In function 'int sprintf(char*, const char*, ...)', inlined from 'void getQualityScore4SOLiD(unsigned int, CReadInBits&, CAlignmentsQ&, CMappingResult&, bool)' at ReadsMapping.cpp:907:16, inlined from 'void getSingleMappingSeqAndQ4SOLiD(const CGenome_Index_TableQ&, CAlignmentsQ&, CMappingResult&, bool)' at ReadsMapping.cpp:947:26: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 13 and 4876 bytes into a destination of size 4096 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: warning: '__builtin___sprintf_chk' argument 5 overlaps destination object 'm' [-Wrestrict] ReadsMapping.cpp: In function 'void getSingleMappingSeqAndQ4SOLiD(const CGenome_Index_TableQ&, CAlignmentsQ&, CMappingResult&, bool)': ReadsMapping.cpp:928:73: note: destination object referenced by 'restrict'-qualified argument 1 was declared here 928 | (const CGenome_Index_TableQ& table, CAlignmentsQ& aQue, CMappingResult& m, bool samFormat) | ~~~~~~~~~~~~~~~~^ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ ParameterList.cpp: In member function 'void MappingOpts::setDefaults()': ParameterList.cpp:31:9: warning: unused variable 'mismatchScoreThreshold' [-Wunused-variable] 31 | int mismatchScoreThreshold = -1; // No filtering by sum of mismatch score | ^~~~~~~~~~~~~~~~~~~~~~ ParameterList.cpp: In member function 'void ParameterList::setDefaults()': ParameterList.cpp:93:21: warning: ignoring return value of 'bool std::operator==(const __cxx11::basic_string<_CharT, _Traits, _Allocator>&, const _CharT*) [with _CharT = char; _Traits = char_traits; _Alloc = allocator]', declared with attribute 'nodiscard' [-Wunused-result] 93 | this->refFormat == "unknown"; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/14/string:54, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from stdafx.h:6, from ParseReadsOpts.h:2, from ParameterList.h:6, from ParameterList.cpp:4: /usr/include/c++/14/bits/basic_string.h:3772:5: note: declared here 3772 | operator==(const basic_string<_CharT, _Traits, _Alloc>& __lhs, | ^~~~~~~~ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ Genome_Index_TableQ.cpp: In member function 'unsigned int CGenome_Index_TableQ::extendAlignment(CAlignmentsQ&, CReadInBits) const': Genome_Index_TableQ.cpp:364:10: warning: variable 'extendForward' set but not used [-Wunused-but-set-variable] 364 | bool extendForward = true; | ^~~~~~~~~~~~~ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ #g++ -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/perm-0.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -fopenmp -o perm *.o -lm -lstdc++ -lbsd make[1]: Leaving directory '/build/reproducible-path/perm-0.4.0' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/perm-0.4.0' # make[1]: Leaving directory '/build/reproducible-path/perm-0.4.0' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'perm' in '../perm_0.4.0-8_arm64.deb'. dpkg-deb: building package 'perm-dbgsym' in '../perm-dbgsym_0.4.0-8_arm64.deb'. dpkg-genbuildinfo --build=binary -O../perm_0.4.0-8_arm64.buildinfo dpkg-genchanges --build=binary -O../perm_0.4.0-8_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1564009 and its subdirectories I: Current time: Sun May 31 01:08:45 -12 2026 I: pbuilder-time-stamp: 1780232925 Mon Apr 28 06:45:47 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Mon Apr 28 06:45:47 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Mon Apr 28 06:45:47 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Mon Apr 28 06:45:47 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-LhGjlW' ==================================================================================== Mon Apr 28 06:45:48 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "2 perm trixie /srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr 0.4.0-8" as arguments. Mon Apr 28 06:45:48 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-Qs98pJlL" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Apr 28 06:45:49 UTC 2025 I: Downloading source for trixie/perm=0.4.0-8 Reading package lists... NOTICE: 'perm' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/perm.git Please use: git clone https://salsa.debian.org/med-team/perm.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 127 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main perm 0.4.0-8 (dsc) [1885 B] Get:2 http://deb.debian.org/debian trixie/main perm 0.4.0-8 (tar) [114 kB] Get:3 http://deb.debian.org/debian trixie/main perm 0.4.0-8 (diff) [11.5 kB] Fetched 127 kB in 0s (9202 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'perm' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/perm.git Please use: git clone https://salsa.debian.org/med-team/perm.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 127 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main perm 0.4.0-8 (dsc) [1885 B] Get:2 http://deb.debian.org/debian trixie/main perm 0.4.0-8 (tar) [114 kB] Get:3 http://deb.debian.org/debian trixie/main perm 0.4.0-8 (diff) [11.5 kB] Fetched 127 kB in 0s (9202 kB/s) Download complete and in download only mode ============================================================================= Re-Building perm in trixie on arm64 on codethink04-arm64 now. Date: Mon Apr 28 07:45:49 BST 2025 Date UTC: Mon Apr 28 06:45:49 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr/pbuilderrc_a8Cb + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' perm = debian-installer -o perm = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' perm = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr/pbuilderrc_a8Cb --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr/b2 --logfile b2/build.log perm_0.4.0-8.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Mon Apr 28 20:45:49 +14 2025 I: pbuilder-time-stamp: 1745822749 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [perm_0.4.0-8.dsc] I: copying [./perm_0.4.0.orig.tar.gz] I: copying [./perm_0.4.0-8.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./perm_0.4.0-8.dsc: unsupported subcommand dpkg-source: info: extracting perm in perm-0.4.0 dpkg-source: info: unpacking perm_0.4.0.orig.tar.gz dpkg-source: info: unpacking perm_0.4.0-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying make_dynamic_executable.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying gcc7.patch dpkg-source: info: applying fix-buffer-overflow.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1428477/tmp/hooks/D01_modify_environment starting debug: Running on codethink04-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Apr 28 06:45 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1428477/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1428477/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=99a2db83fe18496d8b69d9c20b43bab4 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1428477 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr/pbuilderrc_a8Cb --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr/b2 --logfile b2/build.log perm_0.4.0-8.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1428477/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libbsd-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19954 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libbsd-dev; however: Package libbsd-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd-dev{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libmd-dev{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 11.2 MB of archives. After unpacking 45.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.41-4 [93.9 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-7 [285 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.4 [629 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libmd-dev arm64 1.1.0-2+b1 [53.3 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libbsd-dev arm64 0.12.2-2 [257 kB] Fetched 11.2 MB in 0s (72.3 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19954 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41-4_arm64.deb ... Unpacking bsdextrautils (2.41-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-7_arm64.deb ... Unpacking m4 (1.4.19-7) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../23-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.4_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-1_arm64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package libmd-dev:arm64. Preparing to unpack .../29-libmd-dev_1.1.0-2+b1_arm64.deb ... Unpacking libmd-dev:arm64 (1.1.0-2+b1) ... Selecting previously unselected package libbsd-dev:arm64. Preparing to unpack .../30-libbsd-dev_0.12.2-2_arm64.deb ... Unpacking libbsd-dev:arm64 (0.12.2-2) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-7) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-1) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libmd-dev:arm64 (1.1.0-2+b1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up libbsd-dev:arm64 (0.12.2-2) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1428477/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/1428477/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/perm-0.4.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../perm_0.4.0-8_source.changes dpkg-buildpackage: info: source package perm dpkg-buildpackage: info: source version 0.4.0-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/perm-0.4.0' rm -f *.o *.exe cut out perm perm.tar.gz make[1]: Leaving directory '/build/reproducible-path/perm-0.4.0' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/perm-0.4.0' make clean make[2]: Entering directory '/build/reproducible-path/perm-0.4.0' rm -f *.o *.exe cut out perm perm.tar.gz make[2]: Leaving directory '/build/reproducible-path/perm-0.4.0' g++ -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/perm-0.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -fopenmp -o perm -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/perm-0.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -fopenmp AlignmentsQ.cpp Filename.cpp GenomeNTdata.cpp ReadInBits.cpp PerM.cpp chromosomeNTdata.cpp bitsOperationUtil.cpp FileOutputBuffer.cpp HashIndexT.cpp ReadInBitsSet.cpp SeedPattern.cpp boolFlagArray.cpp GenomeInBits.cpp Index_Table.cpp ReadsMapping.cpp PairedReadsMapping.cpp ShortReadUtil.cpp chdir.cpp Genome_Index.cpp MismatchScores.cpp stdafx.cpp Flags.cpp ParseReadsOpts.cpp ColorSpaceRead.cpp Genome_Index_Table.cpp ParameterList.cpp ReadsMappingStats.cpp FileInputBuffer.cpp Genome_Index_TableQ.cpp ReadsQualScores.cpp ChrIndex2GeneName.cpp ReadsFileParser.cpp PairedReadsSet.cpp MappingResult.cpp refInBinFile.cpp LongReadsSet.cpp -lm -lstdc++ -lbsd -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ chromosomeNTdata.cpp: In member function 'unsigned int CchromosomeNTdata::removedNonACGTNBaseAndCollectGeneName()': chromosomeNTdata.cpp:211:41: warning: '%d' directive writing between 1 and 11 bytes into a region of size between 0 and 2047 [-Wformat-overflow=] 211 | sprintf(caGeneName, "%s:%d", caGeneName, (int)this->geneVec.table.size()); | ^~ chromosomeNTdata.cpp:211:37: note: using the range [-2147483648, 2147483647] for directive argument 211 | sprintf(caGeneName, "%s:%d", caGeneName, (int)this->geneVec.table.size()); | ^~~~~~~ In file included from /usr/include/stdio.h:970, from /usr/include/c++/14/cstdio:42, from /usr/include/c++/14/ext/string_conversions.h:45, from /usr/include/c++/14/bits/basic_string.h:4154, from /usr/include/c++/14/string:54, from ChrIndex2GeneName.h:2, from chromosomeNTdata.h:5, from chromosomeNTdata.cpp:1: In function 'int sprintf(char*, const char*, ...)', inlined from 'unsigned int CchromosomeNTdata::removedNonACGTNBaseAndCollectGeneName()' at chromosomeNTdata.cpp:211:24: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 3 and 2060 bytes into a destination of size 2048 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: warning: '__builtin___sprintf_chk' argument 5 overlaps destination object 'caGeneName' [-Wrestrict] chromosomeNTdata.cpp: In member function 'unsigned int CchromosomeNTdata::removedNonACGTNBaseAndCollectGeneName()': chromosomeNTdata.cpp:207:18: note: destination object referenced by 'restrict'-qualified argument 1 was declared here 207 | char caGeneName[MAX_LINE]; | ^~~~~~~~~~ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ ReadsMapping.cpp: In constructor 'CReadsMapping::CReadsMapping(MappingOpts)': ReadsMapping.cpp:102:46: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 102 | sprintf(this->opt.outputDir, "%s/", P.outputDir); | ^ In file included from /usr/include/stdio.h:970, from /usr/include/c++/14/cstdio:42, from /usr/include/c++/14/ext/string_conversions.h:45, from /usr/include/c++/14/bits/basic_string.h:4154, from /usr/include/c++/14/string:54, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from FileOutputBuffer.h:2, from PairedReadsSet.h:4, from LongReadsSet.h:2, from ReadsMapping.h:8, from ReadsMapping.cpp:1: In function 'int sprintf(char*, const char*, ...)', inlined from 'CReadsMapping::CReadsMapping(MappingOpts)' at ReadsMapping.cpp:102:20: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 2 and 4097 bytes into a destination of size 4096 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ReadsMapping.cpp: In function 'std::string getOutputFileNamePrefix(const char*, const CGenome_Index_TableQ&, MappingOpts&)': ReadsMapping.cpp:594:33: warning: '%s' directive writing up to 4095 bytes into a region of size 2048 [-Wformat-overflow=] 594 | sprintf(outputPrefixStr, "%s%s_%c_%u_%d",\ | ^~ In function 'int sprintf(char*, const char*, ...)', inlined from 'std::string getOutputFileNamePrefix(const char*, const CGenome_Index_TableQ&, MappingOpts&)' at ReadsMapping.cpp:594:12: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 7 or more bytes (assuming 4102) into a destination of size 2048 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ReadsMapping.cpp: In member function 'std::string CReadsMapping::getMappingFileN(const char*, const CGenome_Index_TableQ&)': ReadsMapping.cpp:730:30: warning: '%s' directive writing up to 4095 bytes into a region of size 2048 [-Wformat-overflow=] 730 | sprintf(outputPath, "%s%s", this->opt.outputDir, this->opt.outputFileN); | ^~ In function 'int sprintf(char*, const char*, ...)', inlined from 'std::string CReadsMapping::getMappingFileN(const char*, const CGenome_Index_TableQ&)' at ReadsMapping.cpp:730:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 1 and 8191 bytes into a destination of size 2048 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ReadsMapping.cpp: In member function 'std::string CReadsMapping::getMappingFileN(const char*, const CGenome_Index_TableQ&)': ReadsMapping.cpp:594:31: warning: '%s' directive writing up to 4095 bytes into a region of size 2048 [-Wformat-overflow=] 594 | sprintf(outputPrefixStr, "%s%s_%c_%u_%d",\ | ^~ In function 'int sprintf(char*, const char*, ...)', inlined from 'std::string getOutputFileNamePrefix(const char*, const CGenome_Index_TableQ&, MappingOpts&)' at ReadsMapping.cpp:594:12, inlined from 'std::string CReadsMapping::getMappingFileN(const char*, const CGenome_Index_TableQ&)' at ReadsMapping.cpp:715:88: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 7 and 8216 bytes into a destination of size 2048 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ReadsMapping.cpp: In function 'void getSingleMappingSeqAndQ4SOLiD(const CGenome_Index_TableQ&, CAlignmentsQ&, CMappingResult&, bool)': ReadsMapping.cpp:907:27: warning: ' CS:Z:' directive writing 6 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] 907 | sprintf(m.TAG, "%s\tCS:Z:%s\tCQ:Z:%s", m.TAG, m.caRead, m.QScores); | ^~~~~~~ In function 'int sprintf(char*, const char*, ...)', inlined from 'void getQualityScore4SOLiD(unsigned int, CReadInBits&, CAlignmentsQ&, CMappingResult&, bool)' at ReadsMapping.cpp:907:16, inlined from 'void getSingleMappingSeqAndQ4SOLiD(const CGenome_Index_TableQ&, CAlignmentsQ&, CMappingResult&, bool)' at ReadsMapping.cpp:947:26: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 13 and 4876 bytes into a destination of size 4096 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: warning: '__builtin___sprintf_chk' argument 5 overlaps destination object 'm' [-Wrestrict] ReadsMapping.cpp: In function 'void getSingleMappingSeqAndQ4SOLiD(const CGenome_Index_TableQ&, CAlignmentsQ&, CMappingResult&, bool)': ReadsMapping.cpp:928:73: note: destination object referenced by 'restrict'-qualified argument 1 was declared here 928 | (const CGenome_Index_TableQ& table, CAlignmentsQ& aQue, CMappingResult& m, bool samFormat) | ~~~~~~~~~~~~~~~~^ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ ParameterList.cpp: In member function 'void MappingOpts::setDefaults()': ParameterList.cpp:31:9: warning: unused variable 'mismatchScoreThreshold' [-Wunused-variable] 31 | int mismatchScoreThreshold = -1; // No filtering by sum of mismatch score | ^~~~~~~~~~~~~~~~~~~~~~ ParameterList.cpp: In member function 'void ParameterList::setDefaults()': ParameterList.cpp:93:21: warning: ignoring return value of 'bool std::operator==(const __cxx11::basic_string<_CharT, _Traits, _Allocator>&, const _CharT*) [with _CharT = char; _Traits = char_traits; _Alloc = allocator]', declared with attribute 'nodiscard' [-Wunused-result] 93 | this->refFormat == "unknown"; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/14/string:54, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from stdafx.h:6, from ParseReadsOpts.h:2, from ParameterList.h:6, from ParameterList.cpp:4: /usr/include/c++/14/bits/basic_string.h:3772:5: note: declared here 3772 | operator==(const basic_string<_CharT, _Traits, _Alloc>& __lhs, | ^~~~~~~~ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ Genome_Index_TableQ.cpp: In member function 'unsigned int CGenome_Index_TableQ::extendAlignment(CAlignmentsQ&, CReadInBits) const': Genome_Index_TableQ.cpp:364:10: warning: variable 'extendForward' set but not used [-Wunused-but-set-variable] 364 | bool extendForward = true; | ^~~~~~~~~~~~~ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ #g++ -O2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/perm-0.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -fopenmp -o perm *.o -lm -lstdc++ -lbsd make[1]: Leaving directory '/build/reproducible-path/perm-0.4.0' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/perm-0.4.0' # make[1]: Leaving directory '/build/reproducible-path/perm-0.4.0' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'perm' in '../perm_0.4.0-8_arm64.deb'. dpkg-deb: building package 'perm-dbgsym' in '../perm-dbgsym_0.4.0-8_arm64.deb'. dpkg-genbuildinfo --build=binary -O../perm_0.4.0-8_arm64.buildinfo dpkg-genchanges --build=binary -O../perm_0.4.0-8_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1428477/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1428477/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1428477 and its subdirectories I: Current time: Mon Apr 28 20:46:55 +14 2025 I: pbuilder-time-stamp: 1745822815 + false + set +x Mon Apr 28 06:46:55 UTC 2025 I: Signing ./b2/perm_0.4.0-8_arm64.buildinfo as perm_0.4.0-8_arm64.buildinfo.asc Mon Apr 28 06:46:55 UTC 2025 I: Signed ./b2/perm_0.4.0-8_arm64.buildinfo as ./b2/perm_0.4.0-8_arm64.buildinfo.asc Mon Apr 28 06:46:55 UTC 2025 - build #2 for perm/trixie/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Mon Apr 28 06:46:55 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-Qs98pJlL, removing. /srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr: total 56 drwxr-xr-x 2 jenkins jenkins 4096 Apr 28 06:45 b1 drwxr-xr-x 2 jenkins jenkins 4096 Apr 28 06:46 b2 -rw-r--r-- 1 jenkins jenkins 1885 Nov 12 2021 perm_0.4.0-8.dsc -rw------- 1 jenkins jenkins 41900 Apr 28 06:45 rbuildlog.w6ShXMz /srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr/b1: total 1192 -rw-r--r-- 1 jenkins jenkins 38630 Apr 28 06:45 build.log -rw-r--r-- 1 jenkins jenkins 1008612 Apr 28 06:45 perm-dbgsym_0.4.0-8_arm64.deb -rw-r--r-- 1 jenkins jenkins 11528 Apr 28 06:45 perm_0.4.0-8.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1885 Apr 28 06:45 perm_0.4.0-8.dsc -rw-r--r-- 1 jenkins jenkins 4882 Apr 28 06:45 perm_0.4.0-8_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 5764 Apr 28 06:45 perm_0.4.0-8_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1512 Apr 28 06:45 perm_0.4.0-8_arm64.changes -rw-r--r-- 1 jenkins jenkins 117532 Apr 28 06:45 perm_0.4.0-8_arm64.deb -rw-r--r-- 1 jenkins jenkins 1364 Apr 28 06:45 perm_0.4.0-8_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr/b2: total 1184 -rw-r--r-- 1 jenkins jenkins 40573 Apr 28 06:46 build.log -rw-r--r-- 1 jenkins jenkins 1008612 Apr 28 06:46 perm-dbgsym_0.4.0-8_arm64.deb -rw-r--r-- 1 jenkins jenkins 11528 Apr 28 06:46 perm_0.4.0-8.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1885 Apr 28 06:46 perm_0.4.0-8.dsc -rw-r--r-- 1 jenkins jenkins 4882 Apr 28 06:46 perm_0.4.0-8_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 5764 Apr 28 06:46 perm_0.4.0-8_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1512 Apr 28 06:46 perm_0.4.0-8_arm64.changes -rw-r--r-- 1 jenkins jenkins 117532 Apr 28 06:46 perm_0.4.0-8_arm64.deb -rw-r--r-- 1 jenkins jenkins 1364 Apr 28 06:46 perm_0.4.0-8_source.changes Mon Apr 28 06:46:56 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Mon Apr 28 06:46:57 UTC 2025 I: perm_0.4.0-8_arm64.changes: Format: 1.8 Date: Fri, 12 Nov 2021 08:16:27 +0100 Source: perm Binary: perm perm-dbgsym Architecture: arm64 Version: 0.4.0-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: perm - efficient mapping of short reads with periodic spaced seeds Closes: 999489 Changes: perm (0.4.0-8) unstable; urgency=medium . * Set homepage to http://code.google.com/p/perm/ since omicstools seems to have vanished Closes: #999489 * Standards-Version: 4.6.0 (routine-update) * Use secure URI in Homepage field. * Drop fields with obsolete URLs. Checksums-Sha1: 641fae632ff9b1d8968edbd6714f0915e05e05df 1008612 perm-dbgsym_0.4.0-8_arm64.deb 6f6130895f862a2a954acd5552d888d1eb209bb4 4882 perm_0.4.0-8_arm64.buildinfo 538ef8c89bf8d01a506cf8a78f1992a323e4df84 117532 perm_0.4.0-8_arm64.deb Checksums-Sha256: 3e32179e464dba75bc8bc01de003e4721007b4f9bda1c46ad5a9e3aa5a34edf5 1008612 perm-dbgsym_0.4.0-8_arm64.deb 8ea884ba0f3350028e5f727767e5cac88544dc10e446dace6552c44b8b8e0e04 4882 perm_0.4.0-8_arm64.buildinfo 4831847ae18d87dd5447421d939fb685649b410c4ede26252587f7df082e599d 117532 perm_0.4.0-8_arm64.deb Files: c3660722ab174c5c0d124a4f2d2c1066 1008612 debug optional perm-dbgsym_0.4.0-8_arm64.deb 5973d4862531073439ffe29dd1fd23f8 4882 science optional perm_0.4.0-8_arm64.buildinfo 84d3738ff93baed9328fb0559c8612d9 117532 science optional perm_0.4.0-8_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/perm_0.4.0-8.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/perm_0.4.0-8.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/perm_0.4.0-8.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/perm_0.4.0-8.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/arm64/perm_0.4.0-8_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/perm_0.4.0-8.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-04-28 06:45:46.548313618 +0000 +++ b2/build.log 2025-04-28 06:46:56.082830565 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun May 31 01:07:47 -12 2026 -I: pbuilder-time-stamp: 1780232867 +I: Current time: Mon Apr 28 20:45:49 +14 2025 +I: pbuilder-time-stamp: 1745822749 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -28,52 +28,84 @@ dpkg-source: info: applying fix-buffer-overflow.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1564009/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1428477/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 28 06:45 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1428477/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1428477/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='ae08f9231d2245d3849a25c9dac4e2c4' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1564009' - PS1='# ' - PS2='> ' + INVOCATION_ID=99a2db83fe18496d8b69d9c20b43bab4 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1428477 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr/pbuilderrc_4e3y --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr/b1 --logfile b1/build.log perm_0.4.0-8.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr/pbuilderrc_a8Cb --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr/b2 --logfile b2/build.log perm_0.4.0-8.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1564009/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1428477/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -142,7 +174,7 @@ Get: 29 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libmd-dev arm64 1.1.0-2+b1 [53.3 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libbsd-dev arm64 0.12.2-2 [257 kB] -Fetched 11.2 MB in 0s (77.7 MB/s) +Fetched 11.2 MB in 0s (72.3 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19954 files and directories currently installed.) @@ -281,7 +313,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/perm-0.4.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../perm_0.4.0-8_source.changes +I: user script /srv/workspace/pbuilder/1428477/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/1428477/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/perm-0.4.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../perm_0.4.0-8_source.changes dpkg-buildpackage: info: source package perm dpkg-buildpackage: info: source version 0.4.0-8 dpkg-buildpackage: info: source distribution unstable @@ -563,12 +599,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1428477/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1428477/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1564009 and its subdirectories -I: Current time: Sun May 31 01:08:45 -12 2026 -I: pbuilder-time-stamp: 1780232925 +I: removing directory /srv/workspace/pbuilder/1428477 and its subdirectories +I: Current time: Mon Apr 28 20:46:55 +14 2025 +I: pbuilder-time-stamp: 1745822815 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/perm_0.4.0-8.diff: 66.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/perm_0.4.0-8.diff.gz b2/build.log: 80.6% -- replaced with stdout Compressing the 1st log... b1/build.log: 81.3% -- replaced with stdout Mon Apr 28 06:46:58 UTC 2025 I: diffoscope 294 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_perm_trixie_arm64_1745822818 + touch /var/log/reproducible-builds/diffoscope_stamp_perm_trixie_arm64_1745822818 + RESULT=0 + systemd-run '--description=diffoscope on perm/0.4.0-8 in trixie/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_6-90855 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr --run-session -c jenkins-reproducible-trixie-diffoscope-061bae7b-bec5-4ed4-b7c6-4fec856d6476 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr/dbd-tmp-rgGhQhg ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr/perm_0.4.0-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr/perm_0.4.0-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr/perm_0.4.0-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr/b1/perm_0.4.0-8_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr/b2/perm_0.4.0-8_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_6-90855.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr/perm_0.4.0-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr/perm_0.4.0-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr/perm_0.4.0-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr/b1/perm_0.4.0-8_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.RPWpLmBr/b2/perm_0.4.0-8_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 225ms CPU time consumed: 224ms _ __ ___ _ __ _ __ ___ | '_ \ / _ \ '__| '_ ` _ \ | |_) | __/ | | | | | | | | .__/ \___|_| |_| |_| |_| |_| Mon Apr 28 06:46:58 UTC 2025 I: diffoscope 294 found no differences in the changes files, and a .buildinfo file also exists. Mon Apr 28 06:46:58 UTC 2025 I: perm from trixie built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-04-28 06:46:59] INFO: Starting at 2025-04-28 06:46:59.203419 [2025-04-28 06:46:59] INFO: Generating the pages of 1 package(s) [2025-04-28 06:46:59] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/arm64/perm didn't produce a buildlog, even though it has been built. [2025-04-28 06:46:59] INFO: Finished at 2025-04-28 06:46:59.649223, took: 0:00:00.445809 Mon Apr 28 06:46:59 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/arm64/perm.html Mon Apr 28 06:46:59 UTC 2025 I: Submitting .buildinfo files to external archives: Mon Apr 28 06:46:59 UTC 2025 I: Submitting 8.0K b1/perm_0.4.0-8_arm64.buildinfo.asc https://buildinfo.debian.net/6f6130895f862a2a954acd5552d888d1eb209bb4/perm_0.4.0-8_arm64 Mon Apr 28 06:47:17 UTC 2025 I: Submitting 8.0K b2/perm_0.4.0-8_arm64.buildinfo.asc https://buildinfo.debian.net/422742bce198c6cd56383dcf5ee9adceeb47f023/perm_0.4.0-8_arm64 Mon Apr 28 06:47:31 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Apr 28 06:47:31 UTC 2025 I: Done submitting .buildinfo files. Mon Apr 28 06:47:31 UTC 2025 I: Removing signed perm_0.4.0-8_arm64.buildinfo.asc files: removed './b1/perm_0.4.0-8_arm64.buildinfo.asc' removed './b2/perm_0.4.0-8_arm64.buildinfo.asc' 1745822851 arm64 trixie perm Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/perm_0.4.0-8.rbuild.log: 77.5% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/perm_0.4.0-8.rbuild.log.gz [2025-04-28 06:47:31] INFO: Starting at 2025-04-28 06:47:31.582833 [2025-04-28 06:47:31] INFO: Generating the pages of 1 package(s) [2025-04-28 06:47:32] INFO: Finished at 2025-04-28 06:47:32.182535, took: 0:00:00.599710 All cleanup done. Mon Apr 28 06:47:32 UTC 2025 - total duration: 0h 2m 30s. Mon Apr 28 06:47:32 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-FiqgJKjL, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 3min 3.786s CPU time consumed: 7.382s