Running as unit: rb-build-arm64_7-102543.service; invocation ID: 7918d3970b8b497b989ce0ded7b6f273 ==================================================================================== Thu Oct 30 23:58:53 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_7) on jenkins, called using "codethink04-arm64 codethink03-arm64" as arguments. Thu Oct 30 23:58:53 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-hcy8rOdl" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Oct 30 23:58:53 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Thu Oct 30 23:58:53 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-IGUnXl' Thu Oct 30 23:58:54 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Thu Oct 30 23:58:54 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-DtmT4J' ok, let's check if python-pymbar is building anywhere yet… ok, python-pymbar is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of python-pymbar in forky on arm64 on jenkins now. 1st build will be done on codethink04-arm64.debian.net. 2nd build will be done on codethink03-arm64.debian.net. ============================================================================= Thu Oct 30 23:59:11 UTC 2025 I: starting to build python-pymbar/forky/arm64 on jenkins on '2025-10-30 23:58' Thu Oct 30 23:59:11 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_7/102543/console.log 1761868751 arm64 forky python-pymbar Thu Oct 30 23:59:11 UTC 2025 I: Downloading source for forky/python-pymbar=4.0.3-2 --2025-10-30 23:59:11-- http://deb.debian.org/debian/pool/main/p/python-pymbar/python-pymbar_4.0.3-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2234 (2.2K) [text/prs.lines.tag] Saving to: ‘python-pymbar_4.0.3-2.dsc’ 0K .. 100% 270M=0s 2025-10-30 23:59:11 (270 MB/s) - ‘python-pymbar_4.0.3-2.dsc’ saved [2234/2234] --2025-10-30 23:59:11-- http://deb.debian.org/debian/pool/main/p/python-pymbar/python-pymbar_4.0.3-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2234 (2.2K) [text/prs.lines.tag] Saving to: ‘python-pymbar_4.0.3-2.dsc’ 0K .. 100% 270M=0s 2025-10-30 23:59:11 (270 MB/s) - ‘python-pymbar_4.0.3-2.dsc’ saved [2234/2234] Thu Oct 30 23:59:11 UTC 2025 I: python-pymbar_4.0.3-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-pymbar Binary: python3-pymbar Architecture: all Version: 4.0.3-2 Maintainer: Debian Science Maintainers Uploaders: Andrius Merkys , Homepage: https://simtk.org/home/pymbar Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/science-team/python-pymbar Vcs-Git: https://salsa.debian.org/science-team/python-pymbar.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: python3-pytest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-numexpr, python3-numpy, python3-pytest , python3-scipy , python3-setuptools Package-List: python3-pymbar deb science optional arch=all Checksums-Sha1: 8729f3b202d5d64df1600ad480ea15a4e4a2ae12 17168882 python-pymbar_4.0.3.orig.tar.gz 267995a5847a801a605d3d70710c780cf3819a6a 3444 python-pymbar_4.0.3-2.debian.tar.xz Checksums-Sha256: 810566a5b973284b5beb2d9dfece0ca321b4ceb91180c124aac8fd883ed5ee68 17168882 python-pymbar_4.0.3.orig.tar.gz 9fafa671b1afa9cf28b123ef53bb928bbde7b61f33f72326aacafedec9db12bf 3444 python-pymbar_4.0.3-2.debian.tar.xz Files: 5041c9ba6e2be7f78faf6098e1cd246e 17168882 python-pymbar_4.0.3.orig.tar.gz 07bef8c4377b22c54dae188edb7a53a9 3444 python-pymbar_4.0.3-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmaAQmoRHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBrGChAAoMbA/hTkzDPc8VE68sSYObhFpiceZ1o1 m/FQ9jPRugvUu+gg6hEYGKQiR/qjR6Ta4QIV4IskmfujbqKAoM+3H+sNDD8AQgel a/kFqKg3HVYo0CerDWmMCSpix9SQWp+nv/03Rr4Qt6je21HWbtokOnZmUZF+lgnL LAhQMSb8fbJRzpzZy2wAgmEiI2DDQHdE6QVwapCt7MGA4Tt7l9DKglYgsQZXvDAw I7XZ3lglz79ktfot2zdYJVX1HnLL9yh141k5QbPdLBC9XuE20Xc6+b7kjKjnbykP vMlxneyQSZTNiCtVqD3Sl18KmfXEKqhmiHA6u/+jPReJ7yqpjst5SSI97Qe3bkNb g4ledBVLQbBHXzusSTNR9mZPzKOcSFjj687ofV89f5WxElSqXL6wlG1oXU/UgNyL UNPovYpK5Qm/6BI5Mo0IVvfPjN748o2hY6MxaBzj/kMtZFGdQE3FwYvUrbu8F9Vk tN7XYBp0gQk76kd00Mlz+aNKt6vSPSSd36Cbiq9Yx2XNowjNyKDlGWORR1nULYgB ZOufBV1ELEmmEcPremyeFd9utKNDGaSG5RVaySDsLKzCg0rrKZTr0rsvO8W/p0JX yqYpEvoBUHONvJlEVmx49zS1Ye1ADhOQgzYEjM2zQZppmOwEIXagFGcV+aXYT7IK vm7FxL22H4Q= =SVEh -----END PGP SIGNATURE----- Thu Oct 30 23:59:11 UTC 2025 I: Checking whether the package is not for us Thu Oct 30 23:59:11 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Thu Oct 30 23:59:11 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Thu Oct 30 23:59:11 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Thu Oct 30 23:59:11 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-FmDbNv' ==================================================================================== Thu Oct 30 23:59:12 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "1 python-pymbar forky /srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY 4.0.3-2" as arguments. Thu Oct 30 23:59:12 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-wMjJ3Oxv" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Oct 30 23:59:12 UTC 2025 I: Downloading source for forky/python-pymbar=4.0.3-2 Reading package lists... NOTICE: 'python-pymbar' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/python-pymbar.git Please use: git clone https://salsa.debian.org/science-team/python-pymbar.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 17.2 MB of source archives. Get:1 http://deb.debian.org/debian forky/main python-pymbar 4.0.3-2 (dsc) [2234 B] Get:2 http://deb.debian.org/debian forky/main python-pymbar 4.0.3-2 (tar) [17.2 MB] Get:3 http://deb.debian.org/debian forky/main python-pymbar 4.0.3-2 (diff) [3444 B] Fetched 17.2 MB in 0s (38.8 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'python-pymbar' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/python-pymbar.git Please use: git clone https://salsa.debian.org/science-team/python-pymbar.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 17.2 MB of source archives. Get:1 http://deb.debian.org/debian forky/main python-pymbar 4.0.3-2 (dsc) [2234 B] Get:2 http://deb.debian.org/debian forky/main python-pymbar 4.0.3-2 (tar) [17.2 MB] Get:3 http://deb.debian.org/debian forky/main python-pymbar 4.0.3-2 (diff) [3444 B] Fetched 17.2 MB in 0s (38.8 MB/s) Download complete and in download only mode ============================================================================= Building python-pymbar in forky on arm64 on codethink04-arm64 now. Date: Thu Oct 30 23:59:13 GMT 2025 Date UTC: Thu Oct 30 23:59:13 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Oct 30 11:59:13 -12 2025 I: pbuilder-time-stamp: 1761868753 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pymbar_4.0.3-2.dsc] I: copying [./python-pymbar_4.0.3.orig.tar.gz] I: copying [./python-pymbar_4.0.3-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-pymbar_4.0.3-2.dsc: no acceptable signature found dpkg-source: info: extracting python-pymbar in python-pymbar-4.0.3 dpkg-source: info: unpacking python-pymbar_4.0.3.orig.tar.gz dpkg-source: info: unpacking python-pymbar_4.0.3-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3417945/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='1ee1632904de4e63aca4ae5f5b1a366b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3417945' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY/pbuilderrc_WVRc --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY/b1 --logfile b1/build.log python-pymbar_4.0.3-2.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3417945/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-numexpr, python3-numpy, python3-pytest, python3-scipy, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19971 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-numexpr; however: Package python3-numexpr is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-decorator{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numexpr{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pygments{a} python3-pytest{a} python3-scipy{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-pil python3-pooch python3-yaml wget 0 packages upgraded, 69 newly installed, 0 to remove and 0 not upgraded. Need to get 41.2 MB of archives. After unpacking 190 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.3-1 [96.5 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libpython3.13-minimal arm64 3.13.9-1 [858 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 python3.13-minimal arm64 3.13.9-1 [2061 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 media-types all 14.0.0 [30.8 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 libpython3.13-stdlib arm64 3.13.9-1 [1900 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 python3.13 arm64 3.13.9-1 [764 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 python3-numpy-dev arm64 1:2.3.3+ds-3 [135 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 libblas3 arm64 3.12.1-7 [135 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 libgfortran5 arm64 15.2.0-7 [371 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 liblapack3 arm64 3.12.1-7 [1846 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 python3-numpy arm64 1:2.3.3+ds-3 [3589 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.2-4 [97.3 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 automake all 1:1.18.1-2 [877 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-7 [540 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 38 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 41 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.6+dfsg-0.1 [601 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 debhelper all 13.28 [941 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 dh-python all 6.20250414 [116 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 python3-all arm64 3.13.7-1 [1044 B] Get: 51 http://deb.debian.org/debian forky/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 python3-decorator all 5.2.1-2 [33.0 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 56 http://deb.debian.org/debian forky/main arm64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 python3-iniconfig all 2.1.0-1 [7432 B] Get: 58 http://deb.debian.org/debian forky/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 61 http://deb.debian.org/debian forky/main arm64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 64 http://deb.debian.org/debian forky/main arm64 python3-packaging all 25.0-1 [56.6 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 python3-numexpr arm64 2.14.1-1 [133 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 68 http://deb.debian.org/debian forky/main arm64 python3-pytest all 8.4.2-1 [266 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 python3-scipy arm64 1.15.3-1.1 [15.1 MB] Fetched 41.2 MB in 0s (127 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19971 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.3-1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.9-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.9-1) ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.9-1_arm64.deb ... Unpacking python3.13 (3.13.9-1) ... 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Preparing to unpack .../55-python3-scipy_1.15.3-1.1_arm64.deb ... Unpacking python3-scipy (1.15.3-1.1) ... Setting up media-types (14.0.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.14.6+dfsg-0.1) ... Setting up libdebhelper-perl (13.28) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.193-3) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Oct 30 23:59:33 UTC 2025. Universal Time is now: Thu Oct 30 23:59:33 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libblas3:arm64 (3.12.1-7) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libunistring5:arm64 (1.3-2) ... Setting up python3-numpy-dev:arm64 (1:2.3.3+ds-3) ... Setting up autopoint (0.23.1-2) ... Setting up libgfortran5:arm64 (15.2.0-7) ... Setting up autoconf (2.72-3.1) ... Setting up libffi8:arm64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up netbase (6.5) ... Setting up readline-common (8.3-3) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up liblapack3:arm64 (3.12.1-7) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libreadline8t64:arm64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libpython3.13-stdlib:arm64 (3.13.9-1) ... Setting up libpython3-stdlib:arm64 (3.13.7-1) ... Setting up python3.13 (3.13.9-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.7-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-decorator (5.2.1-2) ... Setting up python3-pygments (2.18.0+dfsg-2) ... Setting up python3-packaging (25.0-1) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-numpy (1:2.3.3+ds-3) ... Setting up python3-pluggy (1.6.0-1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-iniconfig (2.1.0-1) ... Setting up python3-scipy (1.15.3-1.1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-pytest (8.4.2-1) ... Setting up python3-typeguard (4.4.4-1) ... Setting up python3-all (3.13.7-1) ... Setting up debhelper (13.28) ... Setting up python3-inflect (7.5.0-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-numexpr (2.14.1-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-setuptools (78.1.1-0.1) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-pymbar-4.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pymbar_4.0.3-2_source.changes dpkg-buildpackage: info: source package python-pymbar dpkg-buildpackage: info: source version 4.0.3-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 dpkg-source: info: using options from python-pymbar-4.0.3/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-pymbar-4.0.3' dh_auto_clean I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: pymbar). By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -rf pymbar.egg-info make[1]: Leaving directory '/build/reproducible-path/python-pymbar-4.0.3' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: pymbar). By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: pymbar). By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar copying pymbar/utils_for_testing.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar copying pymbar/utils.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar copying pymbar/timeseries.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar copying pymbar/other_estimators.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar copying pymbar/mbar_solvers.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar copying pymbar/mbar.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar copying pymbar/fes.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar copying pymbar/confidenceintervals.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar copying pymbar/_version.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar copying pymbar/__init__.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar creating /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems copying pymbar/testsystems/timeseries.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems copying pymbar/testsystems/harmonic_oscillators.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems copying pymbar/testsystems/gaussian_work.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems copying pymbar/testsystems/exponential_distributions.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems copying pymbar/testsystems/__init__.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems creating /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests copying pymbar/tests/test_utils.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests copying pymbar/tests/test_timeseries.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests copying pymbar/tests/test_mbar_solvers.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests copying pymbar/tests/test_mbar.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests copying pymbar/tests/test_fes.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests copying pymbar/tests/test_exp.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests copying pymbar/tests/test_covariance.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests copying pymbar/tests/test_bar.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests copying pymbar/tests/__init__.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests UPDATING /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/_version.py set /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/_version.py to '4.0.3' dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build; python3.13 -m pytest ============================= test session starts ============================== platform linux -- Python 3.13.9, pytest-8.4.2, pluggy-1.6.0 rootdir: /build/reproducible-path/python-pymbar-4.0.3 configfile: setup.cfg plugins: typeguard-4.4.4 collected 150 items pymbar/tests/test_bar.py ..... [ 3%] pymbar/tests/test_exp.py .... [ 6%] pymbar/tests/test_fes.py ..xxsssssssss.....xxssssssss [ 24%] pymbar/tests/test_mbar.py ...x..........x...............x..........xxxx. [ 55%] ..x..................x [ 70%] pymbar/tests/test_mbar_solvers.py ................ [ 80%] pymbar/tests/test_timeseries.py ..ss.ss.. [ 86%] pymbar/tests/test_utils.py ....xx..xx..xx..xx.. [100%] =============================== warnings summary =============================== pymbar/tests/test_mbar_solvers.py:24 /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_mbar_solvers.py:24: PytestUnknownMarkWarning: Unknown pytest.mark.flaky - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.flaky(max_runs=2) # Uses flaky plugin for pytest pymbar/tests/test_mbar_solvers.py:67 /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_mbar_solvers.py:67: PytestUnknownMarkWarning: Unknown pytest.mark.flaky - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html pytest.param("TNC", marks=pytest.mark.flaky(max_runs=2)), # This one is flaky .pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_fes.py: 174 warnings /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/fes.py:2246: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) g[i - 1] = N * np.dot(w_n, db_c[i](x_n)) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ========== 108 passed, 21 skipped, 21 xfailed, 176 warnings in 34.03s ========== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-pymbar/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: pymbar). By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py UPDATING /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/_version.py set /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/_version.py to '4.0.3' running install_lib creating /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar creating /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__pycache__/utils_for_testing.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__pycache__/_version.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__pycache__/fes.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__pycache__/other_estimators.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__pycache__/mbar_solvers.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__pycache__/mbar.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__pycache__/confidenceintervals.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__pycache__/timeseries.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ creating /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests creating /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/__pycache__/test_utils.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/__pycache__/test_timeseries.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/__pycache__/test_mbar_solvers.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/__pycache__/test_mbar.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/__pycache__/test_fes.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/__pycache__/test_exp.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/__pycache__/test_covariance.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/__pycache__/test_bar.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/__init__.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_bar.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_covariance.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_exp.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_fes.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_mbar.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_mbar_solvers.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_timeseries.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_utils.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests creating /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems creating /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems/__pycache__/gaussian_work.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems/__pycache__/timeseries.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems/__pycache__/exponential_distributions.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems/__pycache__/harmonic_oscillators.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems/__init__.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems/exponential_distributions.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems/gaussian_work.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems/harmonic_oscillators.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems/timeseries.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__init__.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/_version.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/confidenceintervals.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/fes.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/mbar.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/mbar_solvers.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/other_estimators.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/timeseries.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/utils.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/utils_for_testing.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/test_bar.py to test_bar.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/test_covariance.py to test_covariance.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/test_exp.py to test_exp.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/test_fes.py to test_fes.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/test_mbar.py to test_mbar.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/test_mbar_solvers.py to test_mbar_solvers.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/test_timeseries.py to test_timeseries.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/test_utils.py to test_utils.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/exponential_distributions.py to exponential_distributions.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/gaussian_work.py to gaussian_work.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/harmonic_oscillators.py to harmonic_oscillators.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/timeseries.py to timeseries.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/_version.py to _version.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/confidenceintervals.py to confidenceintervals.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/fes.py to fes.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/mbar.py to mbar.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/mbar_solvers.py to mbar_solvers.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/other_estimators.py to other_estimators.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/timeseries.py to timeseries.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/utils.py to utils.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/utils_for_testing.py to utils_for_testing.cpython-313.pyc running install_egg_info running egg_info creating pymbar.egg-info writing pymbar.egg-info/PKG-INFO writing dependency_links to pymbar.egg-info/dependency_links.txt writing requirements to pymbar.egg-info/requires.txt writing top-level names to pymbar.egg-info/top_level.txt writing manifest file 'pymbar.egg-info/SOURCES.txt' reading manifest file 'pymbar.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'pymbar.egg-info/SOURCES.txt' Copying pymbar.egg-info to /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar-4.0.3.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pymbar' in '../python3-pymbar_4.0.3-2_all.deb'. dpkg-genbuildinfo --build=binary -O../python-pymbar_4.0.3-2_arm64.buildinfo dpkg-genchanges --build=binary -O../python-pymbar_4.0.3-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from python-pymbar-4.0.3/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3417945 and its subdirectories I: Current time: Thu Oct 30 12:00:28 -12 2025 I: pbuilder-time-stamp: 1761868828 Fri Oct 31 00:00:28 UTC 2025 I: Signing ./b1/python-pymbar_4.0.3-2_arm64.buildinfo as python-pymbar_4.0.3-2_arm64.buildinfo.asc Fri Oct 31 00:00:28 UTC 2025 I: Signed ./b1/python-pymbar_4.0.3-2_arm64.buildinfo as ./b1/python-pymbar_4.0.3-2_arm64.buildinfo.asc Fri Oct 31 00:00:28 UTC 2025 - build #1 for python-pymbar/forky/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Fri Oct 31 00:00:28 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-wMjJ3Oxv, removing. /srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 00:00 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 30 23:59 b2 -rw-rw-r-- 1 jenkins jenkins 2234 Jun 29 2024 python-pymbar_4.0.3-2.dsc -rw------- 1 jenkins jenkins 3380 Oct 30 23:59 rbuildlog.p15982L /srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY/b1: total 188 -rw-r--r-- 1 jenkins jenkins 68964 Oct 31 00:00 build.log -rw-r--r-- 1 jenkins jenkins 3444 Oct 31 00:00 python-pymbar_4.0.3-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2234 Oct 31 00:00 python-pymbar_4.0.3-2.dsc -rw-r--r-- 1 jenkins jenkins 5776 Oct 31 00:00 python-pymbar_4.0.3-2_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 6658 Oct 31 00:00 python-pymbar_4.0.3-2_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1121 Oct 31 00:00 python-pymbar_4.0.3-2_arm64.changes -rw-r--r-- 1 jenkins jenkins 1269 Oct 31 00:00 python-pymbar_4.0.3-2_source.changes -rw-r--r-- 1 jenkins jenkins 79556 Oct 31 00:00 python3-pymbar_4.0.3-2_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY/b2: total 0 Fri Oct 31 00:00:29 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Oct 30 11:59:13 -12 2025 I: pbuilder-time-stamp: 1761868753 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pymbar_4.0.3-2.dsc] I: copying [./python-pymbar_4.0.3.orig.tar.gz] I: copying [./python-pymbar_4.0.3-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-pymbar_4.0.3-2.dsc: no acceptable signature found dpkg-source: info: extracting python-pymbar in python-pymbar-4.0.3 dpkg-source: info: unpacking python-pymbar_4.0.3.orig.tar.gz dpkg-source: info: unpacking python-pymbar_4.0.3-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3417945/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='1ee1632904de4e63aca4ae5f5b1a366b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3417945' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY/pbuilderrc_WVRc --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY/b1 --logfile b1/build.log python-pymbar_4.0.3-2.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3417945/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-numexpr, python3-numpy, python3-pytest, python3-scipy, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19971 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-numexpr; however: Package python3-numexpr is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-decorator{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numexpr{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pygments{a} python3-pytest{a} python3-scipy{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-pil python3-pooch python3-yaml wget 0 packages upgraded, 69 newly installed, 0 to remove and 0 not upgraded. Need to get 41.2 MB of archives. After unpacking 190 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.3-1 [96.5 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libpython3.13-minimal arm64 3.13.9-1 [858 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 python3.13-minimal arm64 3.13.9-1 [2061 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 media-types all 14.0.0 [30.8 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 libpython3.13-stdlib arm64 3.13.9-1 [1900 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 python3.13 arm64 3.13.9-1 [764 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 python3-numpy-dev arm64 1:2.3.3+ds-3 [135 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 libblas3 arm64 3.12.1-7 [135 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 libgfortran5 arm64 15.2.0-7 [371 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 liblapack3 arm64 3.12.1-7 [1846 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 python3-numpy arm64 1:2.3.3+ds-3 [3589 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.2-4 [97.3 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 automake all 1:1.18.1-2 [877 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-7 [540 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 38 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 41 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.6+dfsg-0.1 [601 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 debhelper all 13.28 [941 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 dh-python all 6.20250414 [116 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 python3-all arm64 3.13.7-1 [1044 B] Get: 51 http://deb.debian.org/debian forky/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 python3-decorator all 5.2.1-2 [33.0 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 56 http://deb.debian.org/debian forky/main arm64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 python3-iniconfig all 2.1.0-1 [7432 B] Get: 58 http://deb.debian.org/debian forky/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 61 http://deb.debian.org/debian forky/main arm64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 64 http://deb.debian.org/debian forky/main arm64 python3-packaging all 25.0-1 [56.6 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 python3-numexpr arm64 2.14.1-1 [133 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 68 http://deb.debian.org/debian forky/main arm64 python3-pytest all 8.4.2-1 [266 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 python3-scipy arm64 1.15.3-1.1 [15.1 MB] Fetched 41.2 MB in 0s (127 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19971 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.3-1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.9-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.9-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.9-1_arm64.deb ... Unpacking python3.13-minimal (3.13.9-1) ... Setting up libpython3.13-minimal:arm64 (3.13.9-1) ... Setting up libexpat1:arm64 (2.7.3-1) ... Setting up python3.13-minimal (3.13.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20305 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_arm64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_14.0.0_all.deb ... Unpacking media-types (14.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.5.2-2_arm64.deb ... Unpacking libffi8:arm64 (3.5.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.3-3_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.9-1_arm64.deb ... Unpacking python3.13 (3.13.9-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.13.7-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.13.7-1) ... Setting up python3-minimal (3.13.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21320 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.7-1_arm64.deb ... Unpacking python3 (3.13.7-1) ... Selecting previously unselected package python3-numpy-dev:arm64. Preparing to unpack .../01-python3-numpy-dev_1%3a2.3.3+ds-3_arm64.deb ... Unpacking python3-numpy-dev:arm64 (1:2.3.3+ds-3) ... Selecting previously unselected package libblas3:arm64. Preparing to unpack .../02-libblas3_3.12.1-7_arm64.deb ... Unpacking libblas3:arm64 (3.12.1-7) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../03-libgfortran5_15.2.0-7_arm64.deb ... Unpacking libgfortran5:arm64 (15.2.0-7) ... Selecting previously unselected package liblapack3:arm64. Preparing to unpack .../04-liblapack3_3.12.1-7_arm64.deb ... Unpacking liblapack3:arm64 (3.12.1-7) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../05-python3-numpy_1%3a2.3.3+ds-3_arm64.deb ... Unpacking python3-numpy (1:2.3.3+ds-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../08-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../11-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../12-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../13-bsdextrautils_2.41.2-4_arm64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../14-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../15-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../16-m4_1.4.20-2_arm64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../17-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../18-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../19-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... 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Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../26-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../27-libelf1t64_0.193-3_arm64.deb ... Unpacking libelf1t64:arm64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../28-dwz_0.16-2_arm64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../29-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2-16:arm64. Preparing to unpack .../30-libxml2-16_2.14.6+dfsg-0.1_arm64.deb ... Unpacking libxml2-16:arm64 (2.14.6+dfsg-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../31-gettext_0.23.1-2+b1_arm64.deb ... Unpacking gettext (0.23.1-2+b1) ... 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Selecting previously unselected package python3-decorator. Preparing to unpack .../38-python3-decorator_5.2.1-2_all.deb ... Unpacking python3-decorator (5.2.1-2) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../39-python3-more-itertools_10.8.0-1_all.deb ... Unpacking python3-more-itertools (10.8.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../40-python3-typing-extensions_4.15.0-1_all.deb ... Unpacking python3-typing-extensions (4.15.0-1) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../41-python3-typeguard_4.4.4-1_all.deb ... Unpacking python3-typeguard (4.4.4-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../42-python3-inflect_7.5.0-1_all.deb ... Unpacking python3-inflect (7.5.0-1) ... Selecting previously unselected package python3-iniconfig. Preparing to unpack .../43-python3-iniconfig_2.1.0-1_all.deb ... Unpacking python3-iniconfig (2.1.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../44-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../45-python3-pkg-resources_78.1.1-0.1_all.deb ... Unpacking python3-pkg-resources (78.1.1-0.1) ... Selecting previously unselected package python3-jaraco.text. Preparing to unpack .../46-python3-jaraco.text_4.0.0-1_all.deb ... Unpacking python3-jaraco.text (4.0.0-1) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../47-python3-zipp_3.23.0-1_all.deb ... Unpacking python3-zipp (3.23.0-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../48-python3-setuptools_78.1.1-0.1_all.deb ... Unpacking python3-setuptools (78.1.1-0.1) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../49-python3-jaraco.context_6.0.1-1_all.deb ... Unpacking python3-jaraco.context (6.0.1-1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../50-python3-packaging_25.0-1_all.deb ... Unpacking python3-packaging (25.0-1) ... Selecting previously unselected package python3-numexpr. Preparing to unpack .../51-python3-numexpr_2.14.1-1_arm64.deb ... Unpacking python3-numexpr (2.14.1-1) ... Selecting previously unselected package python3-pluggy. Preparing to unpack .../52-python3-pluggy_1.6.0-1_all.deb ... Unpacking python3-pluggy (1.6.0-1) ... Selecting previously unselected package python3-pygments. Preparing to unpack .../53-python3-pygments_2.18.0+dfsg-2_all.deb ... Unpacking python3-pygments (2.18.0+dfsg-2) ... Selecting previously unselected package python3-pytest. Preparing to unpack .../54-python3-pytest_8.4.2-1_all.deb ... Unpacking python3-pytest (8.4.2-1) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../55-python3-scipy_1.15.3-1.1_arm64.deb ... Unpacking python3-scipy (1.15.3-1.1) ... Setting up media-types (14.0.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.14.6+dfsg-0.1) ... Setting up libdebhelper-perl (13.28) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.193-3) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Oct 30 23:59:33 UTC 2025. Universal Time is now: Thu Oct 30 23:59:33 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libblas3:arm64 (3.12.1-7) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libunistring5:arm64 (1.3-2) ... Setting up python3-numpy-dev:arm64 (1:2.3.3+ds-3) ... Setting up autopoint (0.23.1-2) ... Setting up libgfortran5:arm64 (15.2.0-7) ... Setting up autoconf (2.72-3.1) ... Setting up libffi8:arm64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up netbase (6.5) ... Setting up readline-common (8.3-3) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up liblapack3:arm64 (3.12.1-7) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libreadline8t64:arm64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libpython3.13-stdlib:arm64 (3.13.9-1) ... Setting up libpython3-stdlib:arm64 (3.13.7-1) ... Setting up python3.13 (3.13.9-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.7-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-decorator (5.2.1-2) ... Setting up python3-pygments (2.18.0+dfsg-2) ... Setting up python3-packaging (25.0-1) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-numpy (1:2.3.3+ds-3) ... Setting up python3-pluggy (1.6.0-1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-iniconfig (2.1.0-1) ... Setting up python3-scipy (1.15.3-1.1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-pytest (8.4.2-1) ... Setting up python3-typeguard (4.4.4-1) ... Setting up python3-all (3.13.7-1) ... Setting up debhelper (13.28) ... Setting up python3-inflect (7.5.0-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-numexpr (2.14.1-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-setuptools (78.1.1-0.1) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-pymbar-4.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pymbar_4.0.3-2_source.changes dpkg-buildpackage: info: source package python-pymbar dpkg-buildpackage: info: source version 4.0.3-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 dpkg-source: info: using options from python-pymbar-4.0.3/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-pymbar-4.0.3' dh_auto_clean I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: pymbar). By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -rf pymbar.egg-info make[1]: Leaving directory '/build/reproducible-path/python-pymbar-4.0.3' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: pymbar). By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: pymbar). By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar copying pymbar/utils_for_testing.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar copying pymbar/utils.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar copying pymbar/timeseries.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar copying pymbar/other_estimators.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar copying pymbar/mbar_solvers.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar copying pymbar/mbar.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar copying pymbar/fes.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar copying pymbar/confidenceintervals.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar copying pymbar/_version.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar copying pymbar/__init__.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar creating /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems copying pymbar/testsystems/timeseries.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems copying pymbar/testsystems/harmonic_oscillators.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems copying pymbar/testsystems/gaussian_work.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems copying pymbar/testsystems/exponential_distributions.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems copying pymbar/testsystems/__init__.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems creating /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests copying pymbar/tests/test_utils.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests copying pymbar/tests/test_timeseries.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests copying pymbar/tests/test_mbar_solvers.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests copying pymbar/tests/test_mbar.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests copying pymbar/tests/test_fes.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests copying pymbar/tests/test_exp.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests copying pymbar/tests/test_covariance.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests copying pymbar/tests/test_bar.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests copying pymbar/tests/__init__.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests UPDATING /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/_version.py set /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/_version.py to '4.0.3' dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build; python3.13 -m pytest ============================= test session starts ============================== platform linux -- Python 3.13.9, pytest-8.4.2, pluggy-1.6.0 rootdir: /build/reproducible-path/python-pymbar-4.0.3 configfile: setup.cfg plugins: typeguard-4.4.4 collected 150 items pymbar/tests/test_bar.py ..... [ 3%] pymbar/tests/test_exp.py .... [ 6%] pymbar/tests/test_fes.py ..xxsssssssss.....xxssssssss [ 24%] pymbar/tests/test_mbar.py ...x..........x...............x..........xxxx. [ 55%] ..x..................x [ 70%] pymbar/tests/test_mbar_solvers.py ................ [ 80%] pymbar/tests/test_timeseries.py ..ss.ss.. [ 86%] pymbar/tests/test_utils.py ....xx..xx..xx..xx.. [100%] =============================== warnings summary =============================== pymbar/tests/test_mbar_solvers.py:24 /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_mbar_solvers.py:24: PytestUnknownMarkWarning: Unknown pytest.mark.flaky - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.flaky(max_runs=2) # Uses flaky plugin for pytest pymbar/tests/test_mbar_solvers.py:67 /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_mbar_solvers.py:67: PytestUnknownMarkWarning: Unknown pytest.mark.flaky - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html pytest.param("TNC", marks=pytest.mark.flaky(max_runs=2)), # This one is flaky .pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_fes.py: 174 warnings /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/fes.py:2246: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) g[i - 1] = N * np.dot(w_n, db_c[i](x_n)) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ========== 108 passed, 21 skipped, 21 xfailed, 176 warnings in 34.03s ========== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-pymbar/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: pymbar). By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py UPDATING /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/_version.py set /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/_version.py to '4.0.3' running install_lib creating /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar creating /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__pycache__/utils_for_testing.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__pycache__/_version.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__pycache__/fes.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__pycache__/other_estimators.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__pycache__/mbar_solvers.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__pycache__/mbar.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__pycache__/confidenceintervals.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__pycache__/timeseries.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ creating /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests creating /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/__pycache__/test_utils.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/__pycache__/test_timeseries.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/__pycache__/test_mbar_solvers.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/__pycache__/test_mbar.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/__pycache__/test_fes.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/__pycache__/test_exp.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/__pycache__/test_covariance.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/__pycache__/test_bar.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/__init__.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_bar.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_covariance.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_exp.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_fes.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_mbar.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_mbar_solvers.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_timeseries.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_utils.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests creating /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems creating /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems/__pycache__/gaussian_work.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems/__pycache__/timeseries.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems/__pycache__/exponential_distributions.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems/__pycache__/harmonic_oscillators.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems/__init__.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems/exponential_distributions.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems/gaussian_work.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems/harmonic_oscillators.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems/timeseries.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__init__.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/_version.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/confidenceintervals.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/fes.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/mbar.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/mbar_solvers.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/other_estimators.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/timeseries.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/utils.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/utils_for_testing.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/test_bar.py to test_bar.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/test_covariance.py to test_covariance.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/test_exp.py to test_exp.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/test_fes.py to test_fes.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/test_mbar.py to test_mbar.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/test_mbar_solvers.py to test_mbar_solvers.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/test_timeseries.py to test_timeseries.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/test_utils.py to test_utils.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/exponential_distributions.py to exponential_distributions.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/gaussian_work.py to gaussian_work.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/harmonic_oscillators.py to harmonic_oscillators.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/timeseries.py to timeseries.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/_version.py to _version.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/confidenceintervals.py to confidenceintervals.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/fes.py to fes.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/mbar.py to mbar.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/mbar_solvers.py to mbar_solvers.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/other_estimators.py to other_estimators.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/timeseries.py to timeseries.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/utils.py to utils.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/utils_for_testing.py to utils_for_testing.cpython-313.pyc running install_egg_info running egg_info creating pymbar.egg-info writing pymbar.egg-info/PKG-INFO writing dependency_links to pymbar.egg-info/dependency_links.txt writing requirements to pymbar.egg-info/requires.txt writing top-level names to pymbar.egg-info/top_level.txt writing manifest file 'pymbar.egg-info/SOURCES.txt' reading manifest file 'pymbar.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'pymbar.egg-info/SOURCES.txt' Copying pymbar.egg-info to /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar-4.0.3.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pymbar' in '../python3-pymbar_4.0.3-2_all.deb'. dpkg-genbuildinfo --build=binary -O../python-pymbar_4.0.3-2_arm64.buildinfo dpkg-genchanges --build=binary -O../python-pymbar_4.0.3-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from python-pymbar-4.0.3/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3417945 and its subdirectories I: Current time: Thu Oct 30 12:00:28 -12 2025 I: pbuilder-time-stamp: 1761868828 Fri Oct 31 00:00:29 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Fri Oct 31 00:00:29 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Fri Oct 31 00:00:29 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Fri Oct 31 00:00:29 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-vkorPV' ==================================================================================== Fri Oct 31 00:00:30 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "2 python-pymbar forky /srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY 4.0.3-2" as arguments. Fri Oct 31 00:00:30 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-CvMmmuqd" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 00:00:30 UTC 2025 I: Downloading source for forky/python-pymbar=4.0.3-2 Reading package lists... NOTICE: 'python-pymbar' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/python-pymbar.git Please use: git clone https://salsa.debian.org/science-team/python-pymbar.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 17.2 MB of source archives. Get:1 http://deb.debian.org/debian forky/main python-pymbar 4.0.3-2 (dsc) [2234 B] Get:2 http://deb.debian.org/debian forky/main python-pymbar 4.0.3-2 (tar) [17.2 MB] Get:3 http://deb.debian.org/debian forky/main python-pymbar 4.0.3-2 (diff) [3444 B] Fetched 17.2 MB in 0s (199 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'python-pymbar' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/python-pymbar.git Please use: git clone https://salsa.debian.org/science-team/python-pymbar.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 17.2 MB of source archives. Get:1 http://deb.debian.org/debian forky/main python-pymbar 4.0.3-2 (dsc) [2234 B] Get:2 http://deb.debian.org/debian forky/main python-pymbar 4.0.3-2 (tar) [17.2 MB] Get:3 http://deb.debian.org/debian forky/main python-pymbar 4.0.3-2 (diff) [3444 B] Fetched 17.2 MB in 0s (199 MB/s) Download complete and in download only mode ============================================================================= Re-Building python-pymbar in forky on arm64 on codethink03-arm64 now. Date: Fri Oct 31 00:00:31 GMT 2025 Date UTC: Fri Oct 31 00:00:31 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY/pbuilderrc_XbNd + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' python-pymbar = debian-installer -o python-pymbar = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' python-pymbar = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY/pbuilderrc_XbNd --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY/b2 --logfile b2/build.log python-pymbar_4.0.3-2.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Oct 31 14:00:31 +14 2025 I: pbuilder-time-stamp: 1761868831 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] tar: ./build: time stamp 2026-12-01 07:47:35 is 34192023.17372299 s in the future tar: ./dev/ptmx: time stamp 2026-12-01 07:47:21 is 34192009.17362259 s in the future tar: ./dev/pts: time stamp 2026-12-01 07:47:21 is 34192009.17360535 s in the future tar: ./dev/console: time stamp 2026-12-01 07:47:21 is 34192009.17359695 s in the future tar: ./dev/tty: time stamp 2026-12-01 07:47:21 is 34192009.17358803 s in the future tar: ./dev/urandom: time stamp 2026-12-01 07:47:21 is 34192009.17357971 s in the future tar: ./dev/random: time stamp 2026-12-01 07:47:21 is 34192009.17357139 s in the future tar: ./dev/full: time stamp 2026-12-01 07:47:21 is 34192009.17355863 s in the future tar: ./dev/zero: time stamp 2026-12-01 07:47:21 is 34192009.17354827 s in the future tar: ./dev/null: time stamp 2026-12-01 07:47:21 is 34192009.17353679 s in the future tar: ./etc/group: time stamp 2026-12-01 07:47:39 is 34192027.17340963 s in the future tar: ./etc/group-: time stamp 2026-12-01 07:47:21 is 34192009.17339267 s in the future tar: ./etc/gshadow: time stamp 2026-12-01 07:47:39 is 34192027.17336463 s in the future tar: ./etc/passwd: time stamp 2026-12-01 07:47:39 is 34192027.17333919 s in the future tar: ./etc/passwd-: time stamp 2026-12-01 07:47:21 is 34192009.17331643 s in the future tar: ./etc/shadow: time stamp 2026-12-01 07:47:39 is 34192027.17329339 s in the future tar: ./etc/.pwd.lock: time stamp 2026-12-01 07:47:39 is 34192027.17327519 s in the future tar: ./etc/selinux: time stamp 2026-12-01 07:47:38 is 34192026.17325239 s in the future tar: ./etc/perl/Net: time stamp 2026-12-01 07:47:35 is 34192023.17320267 s in the future tar: ./etc/perl: time stamp 2026-12-01 07:47:34 is 34192022.17319411 s in the future tar: ./etc/kernel: time stamp 2026-12-01 07:47:26 is 34192014.17317567 s in the future tar: ./etc/environment: time stamp 2026-12-01 07:47:26 is 34192014.17316191 s in the future tar: ./etc/shells: time stamp 2026-12-01 07:47:25 is 34192013.17314135 s in the future tar: ./etc/opt: time stamp 2026-12-01 07:47:21 is 34192009.17313147 s in the future tar: ./etc/subgid: time stamp 2026-12-01 07:47:21 is 34192009.17310223 s in the future tar: ./etc/subuid: time stamp 2026-12-01 07:47:21 is 34192009.17309291 s in the future tar: ./etc/fstab: time stamp 2026-12-01 07:47:21 is 34192009.17308099 s in the future tar: ./etc/terminfo: time stamp 2026-12-01 07:47:25 is 34192013.17306227 s in the future tar: ./etc/pam.d/common-session-noninteractive: time stamp 2026-12-01 07:47:26 is 34192014.17299191 s in the future tar: ./etc/pam.d/common-session: time stamp 2026-12-01 07:47:26 is 34192014.17297151 s in the future tar: ./etc/pam.d/common-password: time stamp 2026-12-01 07:47:26 is 34192014.17295691 s in the future tar: ./etc/pam.d/common-account: time stamp 2026-12-01 07:47:26 is 34192014.17294499 s in the future tar: ./etc/pam.d/common-auth: time stamp 2026-12-01 07:47:26 is 34192014.17293367 s in the future tar: ./etc/pam.d: time stamp 2026-12-02 18:41:49 is 34317677.17287991 s in the future tar: ./etc/security/opasswd: time stamp 2026-12-01 07:47:26 is 34192014.17285519 s in the future tar: ./etc/security: time stamp 2026-12-01 07:47:26 is 34192014.17273103 s in the future tar: ./etc/ld.so.conf.d: time stamp 2026-12-01 07:47:40 is 34192028.17268799 s in the future tar: ./etc/logrotate.d: time stamp 2026-12-01 07:47:40 is 34192028.17248623 s in the future tar: ./etc/cron.daily: time stamp 2026-12-01 07:47:40 is 34192028.17244155 s in the future tar: ./etc/apt/trusted.gpg.d: time stamp 2026-12-01 07:47:35 is 34192023.17171127 s in the future tar: ./etc/apt/apt.conf.d/15pbuilder: time stamp 2026-12-01 07:47:35 is 34192023.17164635 s in the future tar: ./etc/apt/apt.conf.d/80proxy: time stamp 2026-12-01 07:48:05 is 34192053.17160747 s in the future tar: ./etc/apt/apt.conf.d: time stamp 2026-12-01 07:48:05 is 34192053.17159819 s in the future tar: ./etc/apt/sources.list: time stamp 2026-12-01 07:48:05 is 34192053.17158331 s in the future tar: ./etc/apt: time stamp 2026-12-01 07:48:05 is 34192053.17157675 s in the future tar: ./etc/update-motd.d: time stamp 2026-12-01 07:47:25 is 34192013.17154907 s in the future tar: ./etc/skel: time stamp 2026-12-01 07:47:25 is 34192013.17150911 s in the future tar: ./etc/dpkg/dpkg.cfg.d/02speedup: time stamp 2026-12-01 07:48:05 is 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tar: ./srv: time stamp 2026-12-01 07:47:21 is 34192009.17119639 s in the future tar: ./usr/local/man: time stamp 2026-12-01 07:47:21 is 34192009.17116783 s in the future tar: ./usr/local/etc: time stamp 2026-12-01 07:47:21 is 34192009.17114639 s in the future tar: ./usr/local/src: time stamp 2026-12-01 07:47:21 is 34192009.17113747 s in the future tar: ./usr/local/sbin: time stamp 2026-12-01 07:47:21 is 34192009.17112815 s in the future tar: ./usr/local/include: time stamp 2026-12-01 07:47:21 is 34192009.17111967 s in the future tar: ./usr/local/libexec: time stamp 2026-12-01 07:47:21 is 34192009.17110983 s in the future tar: ./usr/local/lib: time stamp 2026-12-01 07:47:21 is 34192009.17110115 s in the future tar: ./usr/local/games: time stamp 2026-12-01 07:47:21 is 34192009.17109183 s in the future tar: ./usr/local/bin: time stamp 2026-12-01 07:47:21 is 34192009.17108319 s in the future tar: ./usr/local/share/man: time stamp 2026-12-01 07:47:21 is 34192009.17107091 s in the future tar: ./usr/local/share: time stamp 2026-12-01 07:47:21 is 34192009.17106595 s in the future tar: ./usr/local: time stamp 2026-12-01 07:47:21 is 34192009.17106139 s in the future tar: ./usr/libexec/gcc/aarch64-linux-gnu/15: time stamp 2026-12-03 00:29:40 is 34338547.39086723 s in the future tar: ./usr/libexec/gcc/aarch64-linux-gnu: time stamp 2026-12-01 07:47:27 is 34192014.39083455 s in the future tar: ./usr/libexec/gcc: time stamp 2026-12-01 07:47:27 is 34192014.39082683 s in the future tar: ./usr/libexec/libselinux: time stamp 2026-12-01 07:47:24 is 34192011.39073347 s in the future tar: ./usr/libexec/dpkg: time stamp 2026-12-01 07:47:22 is 34192009.39070195 s in the future tar: ./usr/libexec/coreutils: time stamp 2026-12-01 07:47:22 is 34192009.39042035 s in the future tar: ./usr/libexec: time stamp 2026-12-01 07:47:27 is 34192014.39040719 s in the future tar: ./usr/share/initramfs-tools/hooks: time stamp 2026-12-01 07:47:39 is 34192026.39036755 s in the future tar: ./usr/share/initramfs-tools: time stamp 2026-12-01 07:47:39 is 34192026.39036123 s in the future tar: ./usr/share/fish/completions: time stamp 2026-12-01 07:47:35 is 34192022.36056695 s in the future tar: ./usr/share/fish: time stamp 2026-12-01 07:47:35 is 34192022.36054023 s in the future tar: ./usr/share/perl/5.40.1/warnings: time stamp 2026-12-01 07:47:35 is 34192022.35157611 s in the future tar: ./usr/share/perl/5.40.1/version: time stamp 2026-12-01 07:47:35 is 34192022.35134887 s in the future tar: ./usr/share/perl/5.40.1/unicore/lib/XIDS: time stamp 2026-12-01 07:47:35 is 34192022.33682351 s in the future tar: ./usr/share/perl/5.40.1/unicore/lib/XIDC: time stamp 2026-12-01 07:47:35 is 34192022.33675475 s in the future tar: ./usr/share/perl/5.40.1/unicore/lib/WB: time stamp 2026-12-01 07:47:35 is 34192022.33658167 s in the future tar: ./usr/share/perl/5.40.1/unicore/lib/Vo: time stamp 2026-12-01 07:47:35 is 34192022.33651791 s in the future tar: 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07:47:22 is 34192005.11658775 s in the future tar: ./usr/share/locale/es: time stamp 2026-12-01 07:47:19 is 34192002.11658139 s in the future tar: ./usr/share/locale/et/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11657379 s in the future tar: ./usr/share/locale/et: time stamp 2026-12-01 07:47:19 is 34192002.11656743 s in the future tar: ./usr/share/locale/fi/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11656011 s in the future tar: ./usr/share/locale/fi: time stamp 2026-12-01 07:47:19 is 34192002.11655419 s in the future tar: ./usr/share/locale/fr/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11654655 s in the future tar: ./usr/share/locale/fr: time stamp 2026-12-01 07:47:19 is 34192002.11653999 s in the future tar: ./usr/share/locale/ga/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11653263 s in the future tar: ./usr/share/locale/ga: time stamp 2026-12-01 07:47:19 is 34192002.11652615 s in the future tar: ./usr/share/locale/gl/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11651799 s in the future tar: ./usr/share/locale/gl: time stamp 2026-12-01 07:47:19 is 34192002.11651175 s in the future tar: ./usr/share/locale/hr/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11650351 s in the future tar: ./usr/share/locale/hr: time stamp 2026-12-01 07:47:19 is 34192002.11649675 s in the future tar: ./usr/share/locale/hu/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11648827 s in the future tar: ./usr/share/locale/hu: time stamp 2026-12-01 07:47:19 is 34192002.11648147 s in the future tar: ./usr/share/locale/id/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11647435 s in the future tar: ./usr/share/locale/id: time stamp 2026-12-01 07:47:19 is 34192002.11646807 s in the future tar: ./usr/share/locale/it/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11646111 s in the future tar: ./usr/share/locale/it: time stamp 2026-12-01 07:47:19 is 34192002.11645423 s in the future tar: ./usr/share/locale/ja/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11644699 s in the future tar: ./usr/share/locale/ja: time stamp 2026-12-01 07:47:19 is 34192002.11644055 s in the future tar: ./usr/share/locale/ka/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11643287 s in the future tar: ./usr/share/locale/ka: time stamp 2026-12-01 07:47:19 is 34192002.11642667 s in the future tar: ./usr/share/locale/ko/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11641971 s in the future tar: ./usr/share/locale/ko: time stamp 2026-12-01 07:47:19 is 34192002.11641347 s in the future tar: ./usr/share/locale/lt/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11640571 s in the future tar: ./usr/share/locale/lt: time stamp 2026-12-01 07:47:19 is 34192002.11639975 s in the future tar: ./usr/share/locale/nb/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11639215 s in the future tar: ./usr/share/locale/nb: time stamp 2026-12-01 07:47:19 is 34192002.11638623 s in the future tar: ./usr/share/locale/nl/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11637867 s in the future tar: ./usr/share/locale/nl: time stamp 2026-12-01 07:47:19 is 34192002.11636795 s in the future tar: ./usr/share/locale/pl/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11635971 s in the future tar: ./usr/share/locale/pl: time stamp 2026-12-01 07:47:19 is 34192002.11635311 s in the future tar: ./usr/share/locale/pt/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11634583 s in the future tar: ./usr/share/locale/pt: time stamp 2026-12-01 07:47:19 is 34192002.11633935 s in the future tar: ./usr/share/locale/pt_BR/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11633215 s in the future tar: ./usr/share/locale/pt_BR: time stamp 2026-12-01 07:47:19 is 34192002.11632619 s in the future tar: ./usr/share/locale/ro/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11631911 s in the future tar: ./usr/share/locale/ro: time stamp 2026-12-01 07:47:19 is 34192002.11631315 s in the future tar: ./usr/share/locale/ru/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11630551 s in the future tar: ./usr/share/locale/ru: time stamp 2026-12-01 07:47:19 is 34192002.11629943 s in the future tar: ./usr/share/locale/sk/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11629111 s in the future tar: ./usr/share/locale/sk: time stamp 2026-12-01 07:47:19 is 34192002.11628503 s in the future tar: ./usr/share/locale/sl/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11627759 s in the future tar: ./usr/share/locale/sl: time stamp 2026-12-01 07:47:19 is 34192002.11627135 s in the future tar: ./usr/share/locale/sr/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11626379 s in the future tar: ./usr/share/locale/sr: time stamp 2026-12-01 07:47:19 is 34192002.11625767 s in the future tar: ./usr/share/locale/sv/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11624987 s in the future tar: ./usr/share/locale/sv: time stamp 2026-12-01 07:47:19 is 34192002.11624351 s in the future tar: ./usr/share/locale/tr/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11623627 s in the future tar: ./usr/share/locale/tr: time stamp 2026-12-01 07:47:19 is 34192002.11622983 s in the future tar: ./usr/share/locale/uk/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11622239 s in the future tar: ./usr/share/locale/uk: time stamp 2026-12-01 07:47:19 is 34192002.11621527 s in the future tar: ./usr/share/locale/vi/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11620727 s in the future tar: ./usr/share/locale/vi: time stamp 2026-12-01 07:47:19 is 34192002.11620063 s in the future tar: ./usr/share/locale/zh_CN/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11619291 s in the future tar: ./usr/share/locale/zh_CN: time stamp 2026-12-01 07:47:19 is 34192002.11618659 s in the future tar: ./usr/share/locale/zh_TW/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11617887 s in the future tar: ./usr/share/locale/zh_TW: time stamp 2026-12-01 07:47:19 is 34192002.11617247 s in the future tar: ./usr/share/locale/be/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11616483 s in the future tar: ./usr/share/locale/eu/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11615331 s in the future tar: ./usr/share/locale/ia/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11614135 s in the future tar: ./usr/share/locale/kk/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11612975 s in the future tar: ./usr/share/locale/lg/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11611799 s in the future tar: ./usr/share/locale/ms/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11610695 s in the future tar: ./usr/share/locale/ta/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11609495 s in the future tar: ./usr/share/locale: time stamp 2026-12-01 07:47:39 is 34192022.11608495 s in the future tar: ./usr/share/aptitude: time stamp 2026-12-01 07:47:39 is 34192022.11607875 s in the future tar: ./usr/share: time stamp 2026-12-01 07:47:39 is 34192022.11607271 s in the future tar: ./usr: time stamp 2026-12-01 07:47:21 is 34192004.11606707 s in the future tar: ./etc/alternatives: time stamp 2026-12-01 07:47:40 is 34192023.11605471 s in the future tar: ./etc/systemd/system/timers.target.wants: time stamp 2026-12-01 07:47:35 is 34192018.11604515 s in the future tar: ./etc/systemd/system: time stamp 2026-12-01 07:47:21 is 34192004.11603827 s in the future I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pymbar_4.0.3-2.dsc] I: copying [./python-pymbar_4.0.3.orig.tar.gz] I: copying [./python-pymbar_4.0.3-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-pymbar_4.0.3-2.dsc: no acceptable signature found dpkg-source: info: extracting python-pymbar in python-pymbar-4.0.3 dpkg-source: info: unpacking python-pymbar_4.0.3.orig.tar.gz dpkg-source: info: unpacking python-pymbar_4.0.3-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3334378/tmp/hooks/D01_modify_environment starting debug: Running on codethink03-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 31 00:00 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3334378/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3334378/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=forky EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=fd98ddf190824808aae0d2febf8b8022 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3334378 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY/pbuilderrc_XbNd --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY/b2 --logfile b2/build.log python-pymbar_4.0.3-2.dsc' SUDO_GID=109 SUDO_HOME=/var/lib/jenkins SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3334378/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-numexpr, python3-numpy, python3-pytest, python3-scipy, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19971 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-numexpr; however: Package python3-numexpr is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-decorator{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numexpr{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pygments{a} python3-pytest{a} python3-scipy{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-pil python3-pooch python3-yaml wget 0 packages upgraded, 69 newly installed, 0 to remove and 0 not upgraded. Need to get 41.2 MB of archives. After unpacking 190 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.3-1 [96.5 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libpython3.13-minimal arm64 3.13.9-1 [858 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 python3.13-minimal arm64 3.13.9-1 [2061 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 media-types all 14.0.0 [30.8 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 libpython3.13-stdlib arm64 3.13.9-1 [1900 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 python3.13 arm64 3.13.9-1 [764 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 python3-numpy-dev arm64 1:2.3.3+ds-3 [135 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 libblas3 arm64 3.12.1-7 [135 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 libgfortran5 arm64 15.2.0-7 [371 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 liblapack3 arm64 3.12.1-7 [1846 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 python3-numpy arm64 1:2.3.3+ds-3 [3589 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.2-4 [97.3 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 automake all 1:1.18.1-2 [877 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-7 [540 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 38 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 41 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.6+dfsg-0.1 [601 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 debhelper all 13.28 [941 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 dh-python all 6.20250414 [116 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 python3-all arm64 3.13.7-1 [1044 B] Get: 51 http://deb.debian.org/debian forky/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 python3-decorator all 5.2.1-2 [33.0 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 56 http://deb.debian.org/debian forky/main arm64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 python3-iniconfig all 2.1.0-1 [7432 B] Get: 58 http://deb.debian.org/debian forky/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 61 http://deb.debian.org/debian forky/main arm64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 64 http://deb.debian.org/debian forky/main arm64 python3-packaging all 25.0-1 [56.6 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 python3-numexpr arm64 2.14.1-1 [133 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 68 http://deb.debian.org/debian forky/main arm64 python3-pytest all 8.4.2-1 [266 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 python3-scipy arm64 1.15.3-1.1 [15.1 MB] Fetched 41.2 MB in 0s (162 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19971 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.3-1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.9-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.9-1) ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.9-1_arm64.deb ... Unpacking python3.13 (3.13.9-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.13.7-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.13.7-1) ... Setting up python3-minimal (3.13.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21320 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.7-1_arm64.deb ... Unpacking python3 (3.13.7-1) ... 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Preparing to unpack .../55-python3-scipy_1.15.3-1.1_arm64.deb ... Unpacking python3-scipy (1.15.3-1.1) ... Setting up media-types (14.0.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.14.6+dfsg-0.1) ... Setting up libdebhelper-perl (13.28) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.193-3) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Oct 31 00:00:51 UTC 2025. Universal Time is now: Fri Oct 31 00:00:51 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libblas3:arm64 (3.12.1-7) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libunistring5:arm64 (1.3-2) ... Setting up python3-numpy-dev:arm64 (1:2.3.3+ds-3) ... Setting up autopoint (0.23.1-2) ... Setting up libgfortran5:arm64 (15.2.0-7) ... Setting up autoconf (2.72-3.1) ... Setting up libffi8:arm64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up netbase (6.5) ... Setting up readline-common (8.3-3) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up liblapack3:arm64 (3.12.1-7) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libreadline8t64:arm64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libpython3.13-stdlib:arm64 (3.13.9-1) ... Setting up libpython3-stdlib:arm64 (3.13.7-1) ... Setting up python3.13 (3.13.9-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.7-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-decorator (5.2.1-2) ... Setting up python3-pygments (2.18.0+dfsg-2) ... Setting up python3-packaging (25.0-1) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-numpy (1:2.3.3+ds-3) ... Setting up python3-pluggy (1.6.0-1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-iniconfig (2.1.0-1) ... Setting up python3-scipy (1.15.3-1.1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-pytest (8.4.2-1) ... Setting up python3-typeguard (4.4.4-1) ... Setting up python3-all (3.13.7-1) ... Setting up debhelper (13.28) ... Setting up python3-inflect (7.5.0-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-numexpr (2.14.1-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-setuptools (78.1.1-0.1) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3334378/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for forky I: user script /srv/workspace/pbuilder/3334378/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/python-pymbar-4.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-pymbar_4.0.3-2_source.changes dpkg-buildpackage: info: source package python-pymbar dpkg-buildpackage: info: source version 4.0.3-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 dpkg-source: info: using options from python-pymbar-4.0.3/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-pymbar-4.0.3' dh_auto_clean I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: pymbar). By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -rf pymbar.egg-info make[1]: Leaving directory '/build/reproducible-path/python-pymbar-4.0.3' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: pymbar). By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: pymbar). By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar copying pymbar/utils_for_testing.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar copying pymbar/utils.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar copying pymbar/timeseries.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar copying pymbar/other_estimators.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar copying pymbar/mbar_solvers.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar copying pymbar/mbar.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar copying pymbar/fes.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar copying pymbar/confidenceintervals.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar copying pymbar/_version.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar copying pymbar/__init__.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar creating /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems copying pymbar/testsystems/timeseries.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems copying pymbar/testsystems/harmonic_oscillators.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems copying pymbar/testsystems/gaussian_work.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems copying pymbar/testsystems/exponential_distributions.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems copying pymbar/testsystems/__init__.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems creating /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests copying pymbar/tests/test_utils.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests copying pymbar/tests/test_timeseries.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests copying pymbar/tests/test_mbar_solvers.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests copying pymbar/tests/test_mbar.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests copying pymbar/tests/test_fes.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests copying pymbar/tests/test_exp.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests copying pymbar/tests/test_covariance.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests copying pymbar/tests/test_bar.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests copying pymbar/tests/__init__.py -> /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests UPDATING /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/_version.py set /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/_version.py to '4.0.3' dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build; python3.13 -m pytest ============================= test session starts ============================== platform linux -- Python 3.13.9, pytest-8.4.2, pluggy-1.6.0 rootdir: /build/reproducible-path/python-pymbar-4.0.3 configfile: setup.cfg plugins: typeguard-4.4.4 collected 150 items pymbar/tests/test_bar.py ..... [ 3%] pymbar/tests/test_exp.py .... [ 6%] pymbar/tests/test_fes.py ..xxsssssssss.....xxssssssss [ 24%] pymbar/tests/test_mbar.py ...x..........x...............x..........xxxx. [ 55%] ..x..................x [ 70%] pymbar/tests/test_mbar_solvers.py ................ [ 80%] pymbar/tests/test_timeseries.py ..ss.ss.. [ 86%] pymbar/tests/test_utils.py ....xx..xx..xx..xx.. [100%] =============================== warnings summary =============================== pymbar/tests/test_mbar_solvers.py:24 /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_mbar_solvers.py:24: PytestUnknownMarkWarning: Unknown pytest.mark.flaky - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.flaky(max_runs=2) # Uses flaky plugin for pytest pymbar/tests/test_mbar_solvers.py:67 /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_mbar_solvers.py:67: PytestUnknownMarkWarning: Unknown pytest.mark.flaky - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html pytest.param("TNC", marks=pytest.mark.flaky(max_runs=2)), # This one is flaky .pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_fes.py: 138 warnings /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/fes.py:2246: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) g[i - 1] = N * np.dot(w_n, db_c[i](x_n)) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ========== 108 passed, 21 skipped, 21 xfailed, 140 warnings in 54.56s ========== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-pymbar/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: pymbar). By 2026-Mar-03, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py UPDATING /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/_version.py set /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/_version.py to '4.0.3' running install_lib creating /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar creating /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__pycache__/utils_for_testing.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__pycache__/_version.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__pycache__/fes.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__pycache__/other_estimators.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__pycache__/mbar_solvers.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__pycache__/mbar.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__pycache__/confidenceintervals.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__pycache__/timeseries.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__pycache__ creating /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests creating /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/__pycache__/test_utils.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/__pycache__/test_timeseries.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/__pycache__/test_mbar_solvers.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/__pycache__/test_mbar.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/__pycache__/test_fes.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/__pycache__/test_exp.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/__pycache__/test_covariance.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/__pycache__/test_bar.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/__init__.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_bar.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_covariance.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_exp.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_fes.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_mbar.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_mbar_solvers.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_timeseries.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_utils.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests creating /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems creating /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems/__pycache__/gaussian_work.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems/__pycache__/timeseries.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems/__pycache__/exponential_distributions.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems/__pycache__/harmonic_oscillators.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/__pycache__ copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems/__init__.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems/exponential_distributions.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems/gaussian_work.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems/harmonic_oscillators.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/testsystems/timeseries.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/__init__.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/_version.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/confidenceintervals.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/fes.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/mbar.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/mbar_solvers.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/other_estimators.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/timeseries.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/utils.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar copying /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/utils_for_testing.py -> /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/test_bar.py to test_bar.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/test_covariance.py to test_covariance.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/test_exp.py to test_exp.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/test_fes.py to test_fes.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/test_mbar.py to test_mbar.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/test_mbar_solvers.py to test_mbar_solvers.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/test_timeseries.py to test_timeseries.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/tests/test_utils.py to test_utils.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/exponential_distributions.py to exponential_distributions.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/gaussian_work.py to gaussian_work.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/harmonic_oscillators.py to harmonic_oscillators.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/testsystems/timeseries.py to timeseries.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/_version.py to _version.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/confidenceintervals.py to confidenceintervals.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/fes.py to fes.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/mbar.py to mbar.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/mbar_solvers.py to mbar_solvers.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/other_estimators.py to other_estimators.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/timeseries.py to timeseries.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/utils.py to utils.cpython-313.pyc byte-compiling /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar/utils_for_testing.py to utils_for_testing.cpython-313.pyc running install_egg_info running egg_info creating pymbar.egg-info writing pymbar.egg-info/PKG-INFO writing dependency_links to pymbar.egg-info/dependency_links.txt writing requirements to pymbar.egg-info/requires.txt writing top-level names to pymbar.egg-info/top_level.txt writing manifest file 'pymbar.egg-info/SOURCES.txt' reading manifest file 'pymbar.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'pymbar.egg-info/SOURCES.txt' Copying pymbar.egg-info to /build/reproducible-path/python-pymbar-4.0.3/debian/python3-pymbar/usr/lib/python3.13/dist-packages/pymbar-4.0.3.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pymbar' in '../python3-pymbar_4.0.3-2_all.deb'. dpkg-genbuildinfo --build=binary -O../python-pymbar_4.0.3-2_arm64.buildinfo dpkg-genchanges --build=binary -O../python-pymbar_4.0.3-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from python-pymbar-4.0.3/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3334378/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3334378/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3334378 and its subdirectories I: Current time: Fri Oct 31 14:02:10 +14 2025 I: pbuilder-time-stamp: 1761868930 + false + set +x Fri Oct 31 00:02:10 UTC 2025 I: Signing ./b2/python-pymbar_4.0.3-2_arm64.buildinfo as python-pymbar_4.0.3-2_arm64.buildinfo.asc Fri Oct 31 00:02:10 UTC 2025 I: Signed ./b2/python-pymbar_4.0.3-2_arm64.buildinfo as ./b2/python-pymbar_4.0.3-2_arm64.buildinfo.asc Fri Oct 31 00:02:10 UTC 2025 - build #2 for python-pymbar/forky/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Fri Oct 31 00:02:10 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-CvMmmuqd, removing. /srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY: total 88 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 00:00 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 00:02 b2 -rw-rw-r-- 1 jenkins jenkins 2234 Jun 29 2024 python-pymbar_4.0.3-2.dsc -rw------- 1 jenkins jenkins 72645 Oct 31 00:00 rbuildlog.p15982L /srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY/b1: total 188 -rw-r--r-- 1 jenkins jenkins 68964 Oct 31 00:00 build.log -rw-r--r-- 1 jenkins jenkins 3444 Oct 31 00:00 python-pymbar_4.0.3-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2234 Oct 31 00:00 python-pymbar_4.0.3-2.dsc -rw-r--r-- 1 jenkins jenkins 5776 Oct 31 00:00 python-pymbar_4.0.3-2_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 6658 Oct 31 00:00 python-pymbar_4.0.3-2_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1121 Oct 31 00:00 python-pymbar_4.0.3-2_arm64.changes -rw-r--r-- 1 jenkins jenkins 1269 Oct 31 00:00 python-pymbar_4.0.3-2_source.changes -rw-r--r-- 1 jenkins jenkins 79556 Oct 31 00:00 python3-pymbar_4.0.3-2_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY/b2: total 448 -rw-rw-r-- 1 jenkins jenkins 342324 Oct 31 00:02 build.log -rw-r--r-- 1 jenkins jenkins 3444 Oct 31 00:02 python-pymbar_4.0.3-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2234 Oct 31 00:02 python-pymbar_4.0.3-2.dsc -rw-rw-r-- 1 jenkins jenkins 5776 Oct 31 00:02 python-pymbar_4.0.3-2_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 6658 Oct 31 00:02 python-pymbar_4.0.3-2_arm64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1121 Oct 31 00:02 python-pymbar_4.0.3-2_arm64.changes -rw-rw-r-- 1 jenkins jenkins 1269 Oct 31 00:02 python-pymbar_4.0.3-2_source.changes -rw-r--r-- 1 jenkins jenkins 79556 Oct 31 00:02 python3-pymbar_4.0.3-2_all.deb Fri Oct 31 00:02:11 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Fri Oct 31 00:02:12 UTC 2025 I: python-pymbar_4.0.3-2_arm64.changes: Format: 1.8 Date: Sat, 29 Jun 2024 19:19:06 +0200 Source: python-pymbar Binary: python3-pymbar Architecture: all Version: 4.0.3-2 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Alexandre Detiste Description: python3-pymbar - Python implementation of the multistate Bennett acceptance ratio Changes: python-pymbar (4.0.3-2) unstable; urgency=medium . * Team upload. * Simplify build to avoid FTBFS. Checksums-Sha1: 91abadca01cfb7a41079d008933b3fb5abddcc20 5776 python-pymbar_4.0.3-2_arm64.buildinfo c979e9db9539bcfec19d56712bd6607546ac0195 79556 python3-pymbar_4.0.3-2_all.deb Checksums-Sha256: 7a62a7ccf2e89e17ae7418672e580da0bc9befd33e701962cbca28df95c214b9 5776 python-pymbar_4.0.3-2_arm64.buildinfo 03ef25f95e971d75580b20e0b153b3560f17c336da5428ea10b9f3c6016cdf45 79556 python3-pymbar_4.0.3-2_all.deb Files: 094d1c3ea28ef69254934205c1fdae7f 5776 science optional python-pymbar_4.0.3-2_arm64.buildinfo 50bddba4d76a41e9609caedd2733172e 79556 science optional python3-pymbar_4.0.3-2_all.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/arm64/python-pymbar_4.0.3-2.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/arm64/python-pymbar_4.0.3-2.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/arm64/python-pymbar_4.0.3-2.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/arm64/python-pymbar_4.0.3-2.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/forky/arm64/python-pymbar_4.0.3-2_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/arm64/python-pymbar_4.0.3-2.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-10-31 00:00:29.015331907 +0000 +++ b2/build.log 2025-10-31 00:02:11.799453312 +0000 @@ -1,8 +1,2545 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Oct 30 11:59:13 -12 2025 -I: pbuilder-time-stamp: 1761868753 +I: Current time: Fri Oct 31 14:00:31 +14 2025 +I: pbuilder-time-stamp: 1761868831 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] +tar: ./build: time stamp 2026-12-01 07:47:35 is 34192023.17372299 s in the future +tar: ./dev/ptmx: time stamp 2026-12-01 07:47:21 is 34192009.17362259 s in the future +tar: 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34192023.12152739 s in the future +tar: ./usr/lib/locale/de_IT/LC_MESSAGES: time stamp 2026-12-01 07:47:40 is 34192023.12151999 s in the future +tar: ./usr/lib/locale/de_IT: time stamp 2026-12-01 07:47:40 is 34192023.12151359 s in the future +tar: ./usr/lib/locale/de_IT.utf8/LC_MESSAGES: time stamp 2026-12-01 07:47:40 is 34192023.12150527 s in the future +tar: ./usr/lib/locale/de_IT.utf8: time stamp 2026-12-01 07:47:40 is 34192023.12149895 s in the future +tar: ./usr/lib/locale/de_LI.utf8/LC_MESSAGES: time stamp 2026-12-01 07:47:40 is 34192023.12149187 s in the future +tar: ./usr/lib/locale/de_LI.utf8: time stamp 2026-12-01 07:47:40 is 34192023.12148555 s in the future +tar: ./usr/lib/locale/de_LU/LC_MESSAGES: time stamp 2026-12-01 07:47:40 is 34192023.12147847 s in the future +tar: ./usr/lib/locale/de_LU: time stamp 2026-12-01 07:47:40 is 34192023.12147223 s in the future +tar: ./usr/lib/locale/de_LU.utf8/LC_MESSAGES: time stamp 2026-12-01 07:47:40 is 34192023.12146463 s in the future 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stamp 2026-12-01 07:47:26 is 34192009.11698771 s in the future +tar: ./usr/share/man/es/man8: time stamp 2026-12-01 07:47:40 is 34192023.11697827 s in the future +tar: ./usr/share/man/es/man1: time stamp 2026-12-01 07:47:40 is 34192023.11696955 s in the future +tar: ./usr/share/man/es: time stamp 2026-12-01 07:47:19 is 34192002.11696139 s in the future +tar: ./usr/share/man/fr/man8: time stamp 2026-12-01 07:47:40 is 34192023.11695215 s in the future +tar: ./usr/share/man/fr/man1: time stamp 2026-12-01 07:47:40 is 34192023.11694287 s in the future +tar: ./usr/share/man/fr: time stamp 2026-12-01 07:47:26 is 34192009.11693439 s in the future +tar: ./usr/share/man/ja/man8: time stamp 2026-12-01 07:47:40 is 34192023.11692451 s in the future +tar: ./usr/share/man/ja/man1: time stamp 2026-12-01 07:47:39 is 34192022.11691551 s in the future +tar: ./usr/share/man/ja: time stamp 2026-12-01 07:47:19 is 34192002.11690767 s in the future +tar: ./usr/share/man/man8: time stamp 2026-12-02 18:41:50 is 34317673.11689867 s in the future +tar: ./usr/share/man/pl/man8: time stamp 2026-12-01 07:47:40 is 34192023.11688799 s in the future +tar: ./usr/share/man/pl/man1: time stamp 2026-12-01 07:47:39 is 34192022.11687883 s in the future +tar: ./usr/share/man/pl: time stamp 2026-12-01 07:47:19 is 34192002.11687047 s in the future +tar: ./usr/share/man/man1: time stamp 2026-12-03 00:29:39 is 34338542.11686147 s in the future +tar: ./usr/share/man/man7: time stamp 2026-12-01 07:47:29 is 34192012.11685247 s in the future +tar: ./usr/share/man/it/man1: time stamp 2026-12-01 07:47:39 is 34192022.11684231 s in the future +tar: ./usr/share/man/it/man8: time stamp 2026-12-01 07:47:40 is 34192023.11683299 s in the future +tar: ./usr/share/man/it: time stamp 2026-12-01 07:47:19 is 34192002.11682355 s in the future +tar: ./usr/share/man/sl/man1: time stamp 2026-12-01 07:47:25 is 34192008.11681279 s in the future +tar: ./usr/share/man/sv/man1: time stamp 2026-12-01 07:47:40 is 34192023.11679811 s in the future +tar: ./usr/share/man/sv: time stamp 2026-12-01 07:47:29 is 34192012.11678967 s in the future +tar: ./usr/share/man/cs/man8: time stamp 2026-12-01 07:47:40 is 34192023.11678071 s in the future +tar: ./usr/share/man/cs: time stamp 2026-12-01 07:47:39 is 34192022.11677211 s in the future +tar: ./usr/share/man/fi/man8: time stamp 2026-12-01 07:47:40 is 34192023.11676215 s in the future +tar: ./usr/share/man/fi: time stamp 2026-12-01 07:47:39 is 34192022.11675559 s in the future +tar: ./usr/share/man/gl/man8: time stamp 2026-12-01 07:47:40 is 34192023.11674651 s in the future +tar: ./usr/share/man/gl: time stamp 2026-12-01 07:47:39 is 34192022.11673835 s in the future +tar: ./usr/share/man: time stamp 2026-12-01 07:47:39 is 34192022.11673019 s in the future +tar: ./usr/share/locale/af/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11671999 s in the future +tar: ./usr/share/locale/af: time stamp 2026-12-01 07:47:19 is 34192002.11671199 s in the future +tar: ./usr/share/locale/bg/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11670119 s in the future +tar: ./usr/share/locale/bg: time stamp 2026-12-01 07:47:19 is 34192002.11669243 s in the future +tar: ./usr/share/locale/ca/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11668247 s in the future +tar: ./usr/share/locale/ca: time stamp 2026-12-01 07:47:19 is 34192002.11667603 s in the future +tar: ./usr/share/locale/cs/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11666811 s in the future +tar: ./usr/share/locale/cs: time stamp 2026-12-01 07:47:19 is 34192002.11665259 s in the future +tar: ./usr/share/locale/da/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11664459 s in the future +tar: ./usr/share/locale/da: time stamp 2026-12-01 07:47:19 is 34192002.11663803 s in the future +tar: ./usr/share/locale/de/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11662995 s in the future +tar: ./usr/share/locale/de: time stamp 2026-12-01 07:47:19 is 34192002.11662387 s in the future +tar: ./usr/share/locale/el/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11661611 s in the future +tar: ./usr/share/locale/el: time stamp 2026-12-01 07:47:19 is 34192002.11660951 s in the future +tar: ./usr/share/locale/eo/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11660171 s in the future +tar: ./usr/share/locale/eo: time stamp 2026-12-01 07:47:19 is 34192002.11659507 s in the future +tar: ./usr/share/locale/es/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11658775 s in the future +tar: ./usr/share/locale/es: time stamp 2026-12-01 07:47:19 is 34192002.11658139 s in the future +tar: ./usr/share/locale/et/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11657379 s in the future +tar: ./usr/share/locale/et: time stamp 2026-12-01 07:47:19 is 34192002.11656743 s in the future +tar: ./usr/share/locale/fi/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11656011 s in the future +tar: ./usr/share/locale/fi: time stamp 2026-12-01 07:47:19 is 34192002.11655419 s in the future +tar: ./usr/share/locale/fr/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11654655 s in the future +tar: ./usr/share/locale/fr: time stamp 2026-12-01 07:47:19 is 34192002.11653999 s in the future +tar: ./usr/share/locale/ga/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11653263 s in the future +tar: ./usr/share/locale/ga: time stamp 2026-12-01 07:47:19 is 34192002.11652615 s in the future +tar: ./usr/share/locale/gl/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11651799 s in the future +tar: ./usr/share/locale/gl: time stamp 2026-12-01 07:47:19 is 34192002.11651175 s in the future +tar: ./usr/share/locale/hr/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11650351 s in the future +tar: ./usr/share/locale/hr: time stamp 2026-12-01 07:47:19 is 34192002.11649675 s in the future +tar: ./usr/share/locale/hu/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11648827 s in the future +tar: ./usr/share/locale/hu: time stamp 2026-12-01 07:47:19 is 34192002.11648147 s in the future +tar: ./usr/share/locale/id/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11647435 s in the future +tar: ./usr/share/locale/id: time stamp 2026-12-01 07:47:19 is 34192002.11646807 s in the future +tar: ./usr/share/locale/it/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11646111 s in the future +tar: ./usr/share/locale/it: time stamp 2026-12-01 07:47:19 is 34192002.11645423 s in the future +tar: ./usr/share/locale/ja/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11644699 s in the future +tar: ./usr/share/locale/ja: time stamp 2026-12-01 07:47:19 is 34192002.11644055 s in the future +tar: ./usr/share/locale/ka/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11643287 s in the future +tar: ./usr/share/locale/ka: time stamp 2026-12-01 07:47:19 is 34192002.11642667 s in the future +tar: ./usr/share/locale/ko/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11641971 s in the future +tar: ./usr/share/locale/ko: time stamp 2026-12-01 07:47:19 is 34192002.11641347 s in the future +tar: ./usr/share/locale/lt/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11640571 s in the future +tar: ./usr/share/locale/lt: time stamp 2026-12-01 07:47:19 is 34192002.11639975 s in the future +tar: ./usr/share/locale/nb/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11639215 s in the future +tar: ./usr/share/locale/nb: time stamp 2026-12-01 07:47:19 is 34192002.11638623 s in the future +tar: ./usr/share/locale/nl/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11637867 s in the future +tar: ./usr/share/locale/nl: time stamp 2026-12-01 07:47:19 is 34192002.11636795 s in the future +tar: ./usr/share/locale/pl/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11635971 s in the future +tar: ./usr/share/locale/pl: time stamp 2026-12-01 07:47:19 is 34192002.11635311 s in the future +tar: ./usr/share/locale/pt/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11634583 s in the future +tar: ./usr/share/locale/pt: time stamp 2026-12-01 07:47:19 is 34192002.11633935 s in the future +tar: ./usr/share/locale/pt_BR/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11633215 s in the future +tar: ./usr/share/locale/pt_BR: time stamp 2026-12-01 07:47:19 is 34192002.11632619 s in the future +tar: ./usr/share/locale/ro/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11631911 s in the future +tar: ./usr/share/locale/ro: time stamp 2026-12-01 07:47:19 is 34192002.11631315 s in the future +tar: ./usr/share/locale/ru/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11630551 s in the future +tar: ./usr/share/locale/ru: time stamp 2026-12-01 07:47:19 is 34192002.11629943 s in the future +tar: ./usr/share/locale/sk/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11629111 s in the future +tar: ./usr/share/locale/sk: time stamp 2026-12-01 07:47:19 is 34192002.11628503 s in the future +tar: ./usr/share/locale/sl/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11627759 s in the future +tar: ./usr/share/locale/sl: time stamp 2026-12-01 07:47:19 is 34192002.11627135 s in the future +tar: ./usr/share/locale/sr/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11626379 s in the future +tar: ./usr/share/locale/sr: time stamp 2026-12-01 07:47:19 is 34192002.11625767 s in the future +tar: ./usr/share/locale/sv/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11624987 s in the future +tar: ./usr/share/locale/sv: time stamp 2026-12-01 07:47:19 is 34192002.11624351 s in the future +tar: ./usr/share/locale/tr/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11623627 s in the future +tar: ./usr/share/locale/tr: time stamp 2026-12-01 07:47:19 is 34192002.11622983 s in the future +tar: ./usr/share/locale/uk/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11622239 s in the future +tar: ./usr/share/locale/uk: time stamp 2026-12-01 07:47:19 is 34192002.11621527 s in the future +tar: ./usr/share/locale/vi/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11620727 s in the future +tar: ./usr/share/locale/vi: time stamp 2026-12-01 07:47:19 is 34192002.11620063 s in the future +tar: ./usr/share/locale/zh_CN/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11619291 s in the future +tar: ./usr/share/locale/zh_CN: time stamp 2026-12-01 07:47:19 is 34192002.11618659 s in the future +tar: ./usr/share/locale/zh_TW/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11617887 s in the future +tar: ./usr/share/locale/zh_TW: time stamp 2026-12-01 07:47:19 is 34192002.11617247 s in the future +tar: ./usr/share/locale/be/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11616483 s in the future +tar: ./usr/share/locale/eu/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11615331 s in the future +tar: ./usr/share/locale/ia/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11614135 s in the future +tar: ./usr/share/locale/kk/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11612975 s in the future +tar: ./usr/share/locale/lg/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11611799 s in the future +tar: ./usr/share/locale/ms/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11610695 s in the future +tar: ./usr/share/locale/ta/LC_TIME: time stamp 2026-12-01 07:47:22 is 34192005.11609495 s in the future +tar: ./usr/share/locale: time stamp 2026-12-01 07:47:39 is 34192022.11608495 s in the future +tar: ./usr/share/aptitude: time stamp 2026-12-01 07:47:39 is 34192022.11607875 s in the future +tar: ./usr/share: time stamp 2026-12-01 07:47:39 is 34192022.11607271 s in the future +tar: ./usr: time stamp 2026-12-01 07:47:21 is 34192004.11606707 s in the future +tar: ./etc/alternatives: time stamp 2026-12-01 07:47:40 is 34192023.11605471 s in the future +tar: ./etc/systemd/system/timers.target.wants: time stamp 2026-12-01 07:47:35 is 34192018.11604515 s in the future +tar: ./etc/systemd/system: time stamp 2026-12-01 07:47:21 is 34192004.11603827 s in the future I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem @@ -22,53 +2559,85 @@ dpkg-source: info: unpacking python-pymbar_4.0.3-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3417945/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3334378/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 31 00:00 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3334378/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3334378/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='1ee1632904de4e63aca4ae5f5b1a366b' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3417945' - PS1='# ' - PS2='> ' + INVOCATION_ID=fd98ddf190824808aae0d2febf8b8022 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3334378 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY/pbuilderrc_WVRc --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY/b1 --logfile b1/build.log python-pymbar_4.0.3-2.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY/pbuilderrc_XbNd --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY/b2 --logfile b2/build.log python-pymbar_4.0.3-2.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3417945/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/3334378/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -187,7 +2756,7 @@ Get: 67 http://deb.debian.org/debian forky/main arm64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 68 http://deb.debian.org/debian forky/main arm64 python3-pytest all 8.4.2-1 [266 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 python3-scipy arm64 1.15.3-1.1 [15.1 MB] -Fetched 41.2 MB in 0s (127 MB/s) +Fetched 41.2 MB in 0s (162 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19971 files and directories currently installed.) @@ -422,8 +2991,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Oct 30 23:59:33 UTC 2025. -Universal Time is now: Thu Oct 30 23:59:33 UTC 2025. +Local time is now: Fri Oct 31 00:00:51 UTC 2025. +Universal Time is now: Fri Oct 31 00:00:51 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... @@ -492,7 +3061,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-pymbar-4.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pymbar_4.0.3-2_source.changes +I: user script /srv/workspace/pbuilder/3334378/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/3334378/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-pymbar-4.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-pymbar_4.0.3-2_source.changes dpkg-buildpackage: info: source package python-pymbar dpkg-buildpackage: info: source version 4.0.3-2 dpkg-buildpackage: info: source distribution unstable @@ -713,12 +3286,12 @@ /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_mbar_solvers.py:67: PytestUnknownMarkWarning: Unknown pytest.mark.flaky - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html pytest.param("TNC", marks=pytest.mark.flaky(max_runs=2)), # This one is flaky -.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_fes.py: 174 warnings +.pybuild/cpython3_3.13_pymbar/build/pymbar/tests/test_fes.py: 138 warnings /build/reproducible-path/python-pymbar-4.0.3/.pybuild/cpython3_3.13_pymbar/build/pymbar/fes.py:2246: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) g[i - 1] = N * np.dot(w_n, db_c[i](x_n)) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -========== 108 passed, 21 skipped, 21 xfailed, 176 warnings in 34.03s ========== +========== 108 passed, 21 skipped, 21 xfailed, 140 warnings in 54.56s ========== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -903,12 +3476,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3334378/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3334378/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3417945 and its subdirectories -I: Current time: Thu Oct 30 12:00:28 -12 2025 -I: pbuilder-time-stamp: 1761868828 +I: removing directory /srv/workspace/pbuilder/3334378 and its subdirectories +I: Current time: Fri Oct 31 14:02:10 +14 2025 +I: pbuilder-time-stamp: 1761868930 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/arm64/python-pymbar_4.0.3-2.diff: 89.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/arm64/python-pymbar_4.0.3-2.diff.gz b2/build.log: 89.3% -- replaced with stdout Compressing the 1st log... b1/build.log: 86.1% -- replaced with stdout Fri Oct 31 00:02:13 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_python-pymbar_forky_arm64_1761868933 + touch /var/log/reproducible-builds/diffoscope_stamp_python-pymbar_forky_arm64_1761868933 + RESULT=0 + systemd-run '--description=diffoscope on python-pymbar/4.0.3-2 in forky/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_7-102543 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY --run-session -c jenkins-reproducible-forky-diffoscope-bd86aaaf-e6f7-48d5-abf6-defd09df165e -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY/dbd-tmp-A79QokH ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY/python-pymbar_4.0.3-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY/python-pymbar_4.0.3-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY/python-pymbar_4.0.3-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY/b1/python-pymbar_4.0.3-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY/b2/python-pymbar_4.0.3-2_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_7-102543.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY/python-pymbar_4.0.3-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY/python-pymbar_4.0.3-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY/python-pymbar_4.0.3-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY/b1/python-pymbar_4.0.3-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Sf5hnEJY/b2/python-pymbar_4.0.3-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.004s) 0.004s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 299ms CPU time consumed: 244ms Memory peak: 16.9M (swap: 0B) _ _ _ _ __ _ _| |_| |__ ___ _ __ _ __ _ _ _ __ ___ | |__ __ _ | '_ \| | | | __| '_ \ / _ \| '_ \ _____| '_ \| | | | '_ ` _ \| '_ \ / _` | | |_) | |_| | |_| | | | (_) | | | |_____| |_) | |_| | | | | | | |_) | (_| | | .__/ \__, |\__|_| |_|\___/|_| |_| | .__/ \__, |_| |_| |_|_.__/ \__,_| |_| |___/ |_| |___/ _ __ | '__| | | |_| Fri Oct 31 00:02:14 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Fri Oct 31 00:02:14 UTC 2025 I: python-pymbar from forky built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-10-31 00:02:14] INFO: Starting at 2025-10-31 00:02:14.961263 [2025-10-31 00:02:15] INFO: Generating the pages of 1 package(s) [2025-10-31 00:02:15] CRITICAL: https://tests.reproducible-builds.org/debian/forky/arm64/python-pymbar didn't produce a buildlog, even though it has been built. [2025-10-31 00:02:15] INFO: Finished at 2025-10-31 00:02:15.331088, took: 0:00:00.369832 Fri Oct 31 00:02:15 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/forky/arm64/python-pymbar.html Fri Oct 31 00:02:15 UTC 2025 I: Removing signed python-pymbar_4.0.3-2_arm64.buildinfo.asc files: removed './b1/python-pymbar_4.0.3-2_arm64.buildinfo.asc' removed './b2/python-pymbar_4.0.3-2_arm64.buildinfo.asc' 1761868935 arm64 forky python-pymbar Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/arm64/python-pymbar_4.0.3-2.rbuild.log: 83.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/arm64/python-pymbar_4.0.3-2.rbuild.log.gz [2025-10-31 00:02:15] INFO: Starting at 2025-10-31 00:02:15.839114 [2025-10-31 00:02:16] INFO: Generating the pages of 1 package(s) [2025-10-31 00:02:16] INFO: Finished at 2025-10-31 00:02:16.165605, took: 0:00:00.326497 All cleanup done. Fri Oct 31 00:02:16 UTC 2025 - total duration: 0h 3m 21s. Fri Oct 31 00:02:16 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-hcy8rOdl, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 3min 22.611s CPU time consumed: 4.449s Memory peak: 36.4M (swap: 0B)