Running as unit: rb-build-arm64_7-37733.service ==================================================================================== Fri Sep 27 15:07:06 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_7) on jenkins, called using "codethink02-arm64 codethink03-arm64" as arguments. Fri Sep 27 15:07:06 UTC 2024 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-StqVMro0" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Sep 27 15:07:06 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink02-arm64.debian.net is marked as down. Fri Sep 27 15:07:06 UTC 2024 - checking via ssh if codethink02-arm64.debian.net is up. removed '/tmp/read-only-fs-test-KBMBwZ' Fri Sep 27 15:07:08 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Fri Sep 27 15:07:08 UTC 2024 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-r4lWGU' ok, let's check if rapmap is building anywhere yet… ok, rapmap is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of rapmap in trixie on arm64 on jenkins now. 1st build will be done on codethink02-arm64.debian.net. 2nd build will be done on codethink03-arm64.debian.net. ============================================================================= Fri Sep 27 15:07:16 UTC 2024 I: starting to build rapmap/trixie/arm64 on jenkins on '2024-09-27 15:07' Fri Sep 27 15:07:16 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_7/37733/console.log 1727449636 arm64 trixie rapmap Fri Sep 27 15:07:16 UTC 2024 I: Downloading source for trixie/rapmap=0.15.0+dfsg-4 --2024-09-27 15:07:16-- http://deb.debian.org/debian/pool/main/r/rapmap/rapmap_0.15.0%2bdfsg-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2322 (2.3K) [text/prs.lines.tag] Saving to: ‘rapmap_0.15.0+dfsg-4.dsc’ 0K .. 100% 353M=0s 2024-09-27 15:07:16 (353 MB/s) - ‘rapmap_0.15.0+dfsg-4.dsc’ saved [2322/2322] --2024-09-27 15:07:16-- http://deb.debian.org/debian/pool/main/r/rapmap/rapmap_0.15.0%2bdfsg-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2322 (2.3K) [text/prs.lines.tag] Saving to: ‘rapmap_0.15.0+dfsg-4.dsc’ 0K .. 100% 353M=0s 2024-09-27 15:07:16 (353 MB/s) - ‘rapmap_0.15.0+dfsg-4.dsc’ saved [2322/2322] Fri Sep 27 15:07:16 UTC 2024 I: rapmap_0.15.0+dfsg-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: rapmap Binary: rapmap, rapmap-example-data, rapmap-dev Architecture: any all Version: 0.15.0+dfsg-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Michael R. Crusoe Homepage: https://github.com/COMBINE-lab/RapMap Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/rapmap Vcs-Git: https://salsa.debian.org/med-team/rapmap.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, zlib1g-dev, libdivsufsort-dev, libcereal-dev, libjellyfish-2.0-dev, libjemalloc-dev, libsimde-dev, libsparsehash-dev, libspdlog-dev, libtclap-dev, pkg-config, python3-markdown, python3 Package-List: rapmap deb science optional arch=any rapmap-dev deb science optional arch=all rapmap-example-data deb science optional arch=all Checksums-Sha1: 0c4a16003c0d2fe77679260ebdb6e21792f862f0 624916 rapmap_0.15.0+dfsg.orig.tar.xz 32044b4fcb178f5e7b2495f00c5253358ad9d741 15008 rapmap_0.15.0+dfsg-4.debian.tar.xz Checksums-Sha256: 17068c4f664e07bec3ade28d624e5b84ef240b116bcc39e5b495d73b2d87ede5 624916 rapmap_0.15.0+dfsg.orig.tar.xz 4267978d5484cb29f0a7993df95e6ce48006b946cb6e2d8498716db7e40138af 15008 rapmap_0.15.0+dfsg-4.debian.tar.xz Files: c52551692c7480f0c1a46478595dd24b 624916 rapmap_0.15.0+dfsg.orig.tar.xz 624fa352250052cb177e582f3d50161d 15008 rapmap_0.15.0+dfsg-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmYBufUACgkQPCZ2P2xn 5uL8zRAAgxcnDWblU3dZFeCPt3A1A86+92J2q7BZTAeYdMuybryMTiNeZQyuggo/ Jd4RDWqP8bbGRig6s6wqm9cPNtELDRpjVYMUUgG3ond3b5K2mUJWk9/PaeH6HCne D+JTO0tIzi/IYSAEO3YieqCXTZHpIggqCYB7+bECk1KjV/pjF8PWMRk6NikCuVdM D07xl3IzMsL6/crI+O193JsHtdur/OnSHcnB6mkTbr6HMU/pFZ+RdAWW33RuRj8J O9W9vTQ4O3zZsLwc8kyG7S6OK1p7qM+2lbVln+H/ojvTb6nlPrqxi7+gpfSI+opt VT5ptkJV1rXTLFYTbp12Gd7spSBoZkq0Fv3pJCb0hKYj1gwqj1rgmK4xt4kvU5Sy c4Zu4s5HOGqShskfcp6QCXPmidTFUrYPdHXg2PGGWKu2eHx55DTQlZiWho4NSEMn x0lKGgnOgl/WLgRZuZrZ6mAzRUbJcz6GXmraekWLlhi5UmnFfzsj3sND1ivBbYYz erva/LDvjxPr8SUpclMbYZkw1IHcAsU680o81G3/gHmaW8+kfaKaCrm2cmJQqxRd vXZVixcM6FmKcp8VgIURtL3pedTuQXR1DyZunnmvM2lJyBPXzvN5jIW2y/dH4Gjv JRw1rOujMJDQiynxCclWKNiBXsHN9HTdlCuN5n5Cksp+f6d5uZI= =5gwA -----END PGP SIGNATURE----- Fri Sep 27 15:07:16 UTC 2024 I: Checking whether the package is not for us Fri Sep 27 15:07:16 UTC 2024 I: Starting 1st build on remote node codethink02-arm64.debian.net. Fri Sep 27 15:07:16 UTC 2024 I: Preparing to do remote build '1' on codethink02-arm64.debian.net. Fri Sep 27 15:07:16 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink02-arm64.debian.net is marked as down. Fri Sep 27 15:07:16 UTC 2024 - checking via ssh if codethink02-arm64.debian.net is up. removed '/tmp/read-only-fs-test-1dFaBZ' ==================================================================================== Fri Sep 27 15:07:18 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink02-arm64, called using "1 rapmap trixie /srv/reproducible-results/rbuild-debian/r-b-build.XX916EDH 0.15.0+dfsg-4" as arguments. Fri Sep 27 15:07:18 UTC 2024 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-VblJe3ZA" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Sep 27 15:07:18 UTC 2024 I: Downloading source for trixie/rapmap=0.15.0+dfsg-4 Reading package lists... NOTICE: 'rapmap' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/rapmap.git Please use: git clone https://salsa.debian.org/med-team/rapmap.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 642 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main rapmap 0.15.0+dfsg-4 (dsc) [2322 B] Get:2 http://deb.debian.org/debian trixie/main rapmap 0.15.0+dfsg-4 (tar) [625 kB] Get:3 http://deb.debian.org/debian trixie/main rapmap 0.15.0+dfsg-4 (diff) [15.0 kB] Fetched 642 kB in 0s (27.4 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'rapmap' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/rapmap.git Please use: git clone https://salsa.debian.org/med-team/rapmap.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 642 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main rapmap 0.15.0+dfsg-4 (dsc) [2322 B] Get:2 http://deb.debian.org/debian trixie/main rapmap 0.15.0+dfsg-4 (tar) [625 kB] Get:3 http://deb.debian.org/debian trixie/main rapmap 0.15.0+dfsg-4 (diff) [15.0 kB] Fetched 642 kB in 0s (27.4 MB/s) Download complete and in download only mode ============================================================================= Building rapmap in trixie on arm64 on codethink02-arm64 now. Date: Fri Sep 27 16:07:19 BST 2024 Date UTC: Fri Sep 27 15:07:19 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Sep 27 03:07:19 -12 2024 I: pbuilder-time-stamp: 1727449639 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [rapmap_0.15.0+dfsg-4.dsc] I: copying [./rapmap_0.15.0+dfsg.orig.tar.xz] I: copying [./rapmap_0.15.0+dfsg-4.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Mar 25 17:52:53 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./rapmap_0.15.0+dfsg-4.dsc: no acceptable signature found dpkg-source: info: extracting rapmap in rapmap-0.15.0+dfsg dpkg-source: info: unpacking rapmap_0.15.0+dfsg.orig.tar.xz dpkg-source: info: unpacking rapmap_0.15.0+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use-debian-libs.patch dpkg-source: info: applying use_shared_libs.patch dpkg-source: info: applying avoid_privacy_breach.patch dpkg-source: info: applying spelling dpkg-source: info: applying portable_pause dpkg-source: info: applying no_gomp_needed dpkg-source: info: applying simde I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/84363/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='ab092a9c6da14e2a807add70916f156c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='84363' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.XX916EDH/pbuilderrc_cSFv --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.XX916EDH/b1 --logfile b1/build.log rapmap_0.15.0+dfsg-4.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/84363/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, zlib1g-dev, libdivsufsort-dev, libcereal-dev, libjellyfish-2.0-dev, libjemalloc-dev, libsimde-dev, libsparsehash-dev, libspdlog-dev, libtclap-dev, pkg-config, python3-markdown, python3 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19900 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libdivsufsort-dev; however: Package libdivsufsort-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libjellyfish-2.0-dev; however: Package libjellyfish-2.0-dev is not installed. pbuilder-satisfydepends-dummy depends on libjemalloc-dev; however: Package libjemalloc-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on libsparsehash-dev; however: Package libsparsehash-dev is not installed. pbuilder-satisfydepends-dummy depends on libspdlog-dev; however: Package libspdlog-dev is not installed. pbuilder-satisfydepends-dummy depends on libtclap-dev; however: Package libtclap-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on python3-markdown; however: Package python3-markdown is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} catch2{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcereal-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libdivsufsort-dev{a} libdivsufsort3{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfmt-dev{a} libfmt9{a} libgssapi-krb5-2{a} libicu72{a} libjellyfish-2.0-2{a} libjellyfish-2.0-dev{a} libjemalloc-dev{a} libjemalloc2{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnsl2{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libsparsehash-dev{a} libspdlog-dev{a} libspdlog1.12{a} libssh2-1t64{a} libtclap-dev{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-importlib-metadata{a} python3-markdown{a} python3-minimal{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} rapidjson-dev{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix python3-pygments python3-yaml wget 0 packages upgraded, 93 newly installed, 0 to remove and 0 not upgraded. Need to get 47.9 MB of archives. After unpacking 202 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.6-1 [806 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.3-1 [90.2 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.6-1 [1935 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.12.5-1+b1 [26.9 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1 [22.8 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-3 [9112 B] Get: 12 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3 [78.4 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libnsl2 arm64 1.3.0-3+b2 [37.7 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.6-1 [1898 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.6-1 [669 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.12.5-1+b1 [9872 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.12.5-1+b1 [27.9 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libproc2-0 arm64 2:4.0.4-5 [61.3 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 procps arm64 2:4.0.4-5 [868 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-8 [96.6 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 catch2 arm64 3.4.0-1 [551 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libarchive13t64 arm64 3.7.4-1 [323 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b4 [292 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3 [174 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.63.0-1 [71.2 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.0-7 [208 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.10.1-1 [322 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libjsoncpp25 arm64 1.9.5-6+b2 [73.2 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 librhash0 arm64 1.4.3-3+b1 [127 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libuv1t64 arm64 1.48.0-6 [142 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 cmake-data all 3.30.3-1 [2221 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 cmake arm64 3.30.3-1 [9398 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 64 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-2 [188 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 rapidjson-dev all 1.1.0+dfsg2-7.3 [98.0 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libcereal-dev arm64 1.3.2+dfsg-5 [221 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libdivsufsort3 arm64 2.0.1-6 [39.1 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libdivsufsort-dev arm64 2.0.1-6 [18.8 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libfmt9 arm64 9.1.0+ds1-2 [107 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libfmt-dev arm64 9.1.0+ds1-2 [171 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libjellyfish-2.0-2 arm64 2.3.1-3+b5 [62.1 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libjellyfish-2.0-dev arm64 2.3.1-3+b5 [136 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libjemalloc2 arm64 5.3.0-2+b1 [218 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libjemalloc-dev arm64 5.3.0-2+b1 [359 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-3 [35.3 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libsimde-dev all 0.8.2-1 [465 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libsparsehash-dev all 2.0.3-2 [76.8 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libspdlog1.12 arm64 1:1.12.0+ds-2+b1 [125 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libspdlog-dev arm64 1:1.12.0+ds-2+b1 [85.5 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libtclap-dev arm64 1.2.5-1+b1 [3359 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-3 [29.4 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-3 [26.0 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 pkg-config arm64 1.8.1-3 [13.9 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.20.2-1 [10.3 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 python3-importlib-metadata all 8.5.0-1 [21.0 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 python3-markdown all 3.7-1 [85.1 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB] Fetched 47.9 MB in 0s (154 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19900 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.6-1_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.6-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.6-1_arm64.deb ... Unpacking python3.12-minimal (3.12.6-1) ... Setting up libpython3.12-minimal:arm64 (3.12.6-1) ... Setting up libexpat1:arm64 (2.6.3-1) ... Setting up python3.12-minimal (3.12.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20220 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.5-1+b1_arm64.deb ... Unpacking python3-minimal (3.12.5-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../05-libcom-err2_1.47.1-1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../07-libkeyutils1_1.6.3-3_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../12-libnsl2_1.3.0-3+b2_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../14-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.6-1_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.6-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.6-1_arm64.deb ... Unpacking python3.12 (3.12.6-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../17-libpython3-stdlib_3.12.5-1+b1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.12.5-1+b1) ... Setting up python3-minimal (3.12.5-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21294 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.5-1+b1_arm64.deb ... Unpacking python3 (3.12.5-1+b1) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-5_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-5) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a4.0.4-5_arm64.deb ... Unpacking procps (2:4.0.4-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../05-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../08-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.40.2-8_arm64.deb ... Unpacking bsdextrautils (2.40.2-8) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../11-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package catch2. Preparing to unpack .../18-catch2_3.4.0-1_arm64.deb ... Unpacking catch2 (3.4.0-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../19-libicu72_72.1-5_arm64.deb ... Unpacking libicu72:arm64 (72.1-5) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../20-libxml2_2.9.14+dfsg-1.3+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package libarchive13t64:arm64. Preparing to unpack .../21-libarchive13t64_3.7.4-1_arm64.deb ... Unpacking libarchive13t64:arm64 (3.7.4-1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../22-libbrotli1_1.1.0-2+b4_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b4) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../23-libsasl2-modules-db_2.1.28+dfsg1-8_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../24-libsasl2-2_2.1.28+dfsg1-8_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:arm64. Preparing to unpack .../25-libldap-2.5-0_2.5.18+dfsg-3_arm64.deb ... Unpacking libldap-2.5-0:arm64 (2.5.18+dfsg-3) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../26-libnghttp2-14_1.63.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.63.0-1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../27-libpsl5t64_0.21.2-1.1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../28-librtmp1_2.4+20151223.gitfa8646d.1-2+b4_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b4) ... Selecting previously unselected package libssh2-1t64:arm64. Preparing to unpack .../29-libssh2-1t64_1.11.0-7_arm64.deb ... Unpacking libssh2-1t64:arm64 (1.11.0-7) ... Selecting previously unselected package libcurl4t64:arm64. Preparing to unpack .../30-libcurl4t64_8.10.1-1_arm64.deb ... Unpacking libcurl4t64:arm64 (8.10.1-1) ... Selecting previously unselected package libjsoncpp25:arm64. Preparing to unpack .../31-libjsoncpp25_1.9.5-6+b2_arm64.deb ... Unpacking libjsoncpp25:arm64 (1.9.5-6+b2) ... Selecting previously unselected package librhash0:arm64. Preparing to unpack .../32-librhash0_1.4.3-3+b1_arm64.deb ... Unpacking librhash0:arm64 (1.4.3-3+b1) ... Selecting previously unselected package libuv1t64:arm64. Preparing to unpack .../33-libuv1t64_1.48.0-6_arm64.deb ... Unpacking libuv1t64:arm64 (1.48.0-6) ... Selecting previously unselected package cmake-data. Preparing to unpack .../34-cmake-data_3.30.3-1_all.deb ... Unpacking cmake-data (3.30.3-1) ... Selecting previously unselected package cmake. Preparing to unpack .../35-cmake_3.30.3-1_arm64.deb ... Unpacking cmake (3.30.3-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../36-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../37-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../38-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../39-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../40-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../41-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../42-libelf1t64_0.191-2_arm64.deb ... Unpacking libelf1t64:arm64 (0.191-2) ... Selecting previously unselected package dwz. 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Unpacking libcereal-dev (1.3.2+dfsg-5) ... Selecting previously unselected package libdivsufsort3:arm64. Preparing to unpack .../50-libdivsufsort3_2.0.1-6_arm64.deb ... Unpacking libdivsufsort3:arm64 (2.0.1-6) ... Selecting previously unselected package libdivsufsort-dev:arm64. Preparing to unpack .../51-libdivsufsort-dev_2.0.1-6_arm64.deb ... Unpacking libdivsufsort-dev:arm64 (2.0.1-6) ... Selecting previously unselected package libfmt9:arm64. Preparing to unpack .../52-libfmt9_9.1.0+ds1-2_arm64.deb ... Unpacking libfmt9:arm64 (9.1.0+ds1-2) ... Selecting previously unselected package libfmt-dev:arm64. Preparing to unpack .../53-libfmt-dev_9.1.0+ds1-2_arm64.deb ... Unpacking libfmt-dev:arm64 (9.1.0+ds1-2) ... Selecting previously unselected package libjellyfish-2.0-2:arm64. Preparing to unpack .../54-libjellyfish-2.0-2_2.3.1-3+b5_arm64.deb ... Unpacking libjellyfish-2.0-2:arm64 (2.3.1-3+b5) ... Selecting previously unselected package libjellyfish-2.0-dev. 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Setting up libkeyutils1:arm64 (1.6.3-3) ... Setting up libicu72:arm64 (72.1-5) ... Setting up bsdextrautils (2.40.2-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:arm64 (1.1.0-2+b4) ... Setting up libuv1t64:arm64 (1.48.0-6) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up libpsl5t64:arm64 (0.21.2-1.1) ... Setting up libnghttp2-14:arm64 (1.63.0-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:arm64 (1.47.1-1) ... Setting up file (1:5.45-3) ... Setting up libjemalloc2:arm64 (5.3.0-2+b1) ... Setting up libsparsehash-dev (2.0.3-2) ... Setting up libelf1t64:arm64 (0.191-2) ... Setting up rapidjson-dev (1.1.0+dfsg2-7.3) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Sep 27 15:07:44 UTC 2024. Universal Time is now: Fri Sep 27 15:07:44 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libjellyfish-2.0-2:arm64 (2.3.1-3+b5) ... Setting up libjemalloc-dev (5.3.0-2+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libpkgconf3:arm64 (1.8.1-3) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libproc2-0:arm64 (2:4.0.4-5) ... Setting up autopoint (0.22.5-2) ... Setting up libjsoncpp25:arm64 (1.9.5-6+b2) ... Setting up pkgconf-bin (1.8.1-3) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up libtclap-dev (1.2.5-1+b1) ... Setting up libfmt9:arm64 (9.1.0+ds1-2) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up librhash0:arm64 (1.4.3-3+b1) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up procps (2:4.0.4-5) ... Setting up netbase (6.4) ... Setting up cmake-data (3.30.3-1) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libssh2-1t64:arm64 (1.11.0-7) ... Setting up libdivsufsort3:arm64 (2.0.1-6) ... Setting up readline-common (8.2-5) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up libdivsufsort-dev:arm64 (2.0.1-6) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libspdlog1.12:arm64 (1:1.12.0+ds-2+b1) ... Setting up libjellyfish-2.0-dev (2.3.1-3+b5) ... Setting up libtool (2.4.7-7) ... Setting up libcereal-dev (1.3.2+dfsg-5) ... Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-3) ... Setting up pkgconf:arm64 (1.8.1-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libfmt-dev:arm64 (9.1.0+ds1-2) ... Setting up pkg-config:arm64 (1.8.1-3) ... Setting up libreadline8t64:arm64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libarchive13t64:arm64 (3.7.4-1) ... Setting up libcurl4t64:arm64 (8.10.1-1) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libspdlog-dev:arm64 (1:1.12.0+ds-2+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:arm64 (1.3.0-3+b2) ... Setting up cmake (3.30.3-1) ... Setting up libpython3.12-stdlib:arm64 (3.12.6-1) ... Setting up python3.12 (3.12.6-1) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:arm64 (3.12.5-1+b1) ... Setting up python3 (3.12.5-1+b1) ... Setting up python3-zipp (3.20.2-1) ... Setting up python3-markdown (3.7-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-importlib-metadata (8.5.0-1) ... Processing triggers for libc-bin (2.40-2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/rapmap-0.15.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../rapmap_0.15.0+dfsg-4_source.changes dpkg-buildpackage: info: source package rapmap dpkg-buildpackage: info: source version 0.15.0+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/rapmap-0.15.0+dfsg' dh_clean README.html sample_data/sample_quasi_index/ sample_data/sample_quasi_index_ph/ sample_data/sample_quasi_map.sam sample_data/sample_quasi_map_ph.sam make[1]: Leaving directory '/build/reproducible-path/rapmap-0.15.0+dfsg' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/rapmap-0.15.0+dfsg' dh_auto_configure -- -DJELLYFISH_ROOT=/usr -DNO_NATIVE_ARCH=true cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DJELLYFISH_ROOT=/usr -DNO_NATIVE_ARCH=true .. CC: gcc CC version: -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done version: 0.6.0 -- DISABLING NATIVE ARCH. -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE Making Default build type -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.3.1") -- Found Cereal: /usr/include (Required is at least version "1.2.2") -- Cereal found (include: /usr/include) -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Found Jemalloc: /usr/lib/aarch64-linux-gnu/libjemalloc.so (found version "5.3.0-0-g54eaed1d8b56b1aa528be3bdd1877e59c56fa90c") Found Jemalloc library --- using this memory allocator CPACK_SOURCE_IGNORE_FILES = .git/ CMAKE_SYSTEM_PROCESSOR: aarch64 -- Configuring done (3.0s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED JELLYFISH_ROOT -- Build files have been written to: /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/rapmap-0.15.0+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/rapmap-0.15.0+dfsg' dh_auto_build cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/rapmap-0.15.0+dfsg -B/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/ksw2pp_basic.dir/build.make src/CMakeFiles/ksw2pp_basic.dir/depend make -f src/CMakeFiles/ksw2pp_sse2.dir/build.make src/CMakeFiles/ksw2pp_sse2.dir/depend make[4]: Entering directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rapmap-0.15.0+dfsg /build/reproducible-path/rapmap-0.15.0+dfsg/src /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/ksw2pp_basic.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rapmap-0.15.0+dfsg /build/reproducible-path/rapmap-0.15.0+dfsg/src /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/ksw2pp_sse2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/ksw2pp_basic.dir/build.make src/CMakeFiles/ksw2pp_basic.dir/build make[4]: Leaving directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/ksw2pp_sse2.dir/build.make src/CMakeFiles/ksw2pp_sse2.dir/build make[4]: Entering directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' [ 3%] Building C object src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o [ 7%] Building C object src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o [ 11%] Building C object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o [ 15%] Building C object src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extz2_sse.c.o [ 19%] Building C object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extz.c.o cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/digestpp -I/build/reproducible-path/rapmap-0.15.0+dfsg/external -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/cereal/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/install/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o -MF CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o.d -o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_extf2_sse.c cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/digestpp -I/build/reproducible-path/rapmap-0.15.0+dfsg/external -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/cereal/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/install/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o -MF CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o.d -o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_extd2_sse.c cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_extd.c cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_gg2_sse.c cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -g -O2 -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/ksw2pp/KSW2Aligner.cpp make[4]: Leaving directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' [ 38%] Built target ksw2pp_basic make[4]: Leaving directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' [ 38%] Built target ksw2pp_sse2 make -f src/CMakeFiles/ksw2pp.dir/build.make src/CMakeFiles/ksw2pp.dir/depend make[4]: Entering directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rapmap-0.15.0+dfsg /build/reproducible-path/rapmap-0.15.0+dfsg/src 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-fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/RapMapSAMapper.cpp.o -MF CMakeFiles/rapmap.dir/RapMapSAMapper.cpp.o.d -o CMakeFiles/rapmap.dir/RapMapSAMapper.cpp.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp [ 76%] Building CXX object src/CMakeFiles/rapmap.dir/stringpiece.cc.o [ 73%] Building CXX object src/CMakeFiles/rapmap.dir/HitManager.cpp.o [ 80%] Building CXX object src/CMakeFiles/rapmap.dir/rank9b.cpp.o cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/digestpp -I/build/reproducible-path/rapmap-0.15.0+dfsg/external -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/cereal/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/RapMapFileSystem.cpp.o -MF CMakeFiles/rapmap.dir/RapMapFileSystem.cpp.o.d -o CMakeFiles/rapmap.dir/RapMapFileSystem.cpp.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapFileSystem.cpp cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/digestpp -I/build/reproducible-path/rapmap-0.15.0+dfsg/external -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/cereal/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/RapMapSAIndex.cpp.o -MF CMakeFiles/rapmap.dir/RapMapSAIndex.cpp.o.d -o CMakeFiles/rapmap.dir/RapMapSAIndex.cpp.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndex.cpp cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/digestpp -I/build/reproducible-path/rapmap-0.15.0+dfsg/external -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/cereal/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/HitManager.cpp.o -MF CMakeFiles/rapmap.dir/HitManager.cpp.o.d -o CMakeFiles/rapmap.dir/HitManager.cpp.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/HitManager.cpp cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/digestpp -I/build/reproducible-path/rapmap-0.15.0+dfsg/external -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/cereal/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/FastxParser.cpp.o -MF CMakeFiles/rapmap.dir/FastxParser.cpp.o.d -o CMakeFiles/rapmap.dir/FastxParser.cpp.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/FastxParser.cpp cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/digestpp -I/build/reproducible-path/rapmap-0.15.0+dfsg/external -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/cereal/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/rank9b.cpp.o -MF CMakeFiles/rapmap.dir/rank9b.cpp.o.d -o CMakeFiles/rapmap.dir/rank9b.cpp.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/rank9b.cpp cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/digestpp -I/build/reproducible-path/rapmap-0.15.0+dfsg/external -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/cereal/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/stringpiece.cc.o -MF CMakeFiles/rapmap.dir/stringpiece.cc.o.d -o CMakeFiles/rapmap.dir/stringpiece.cc.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/stringpiece.cc [ 84%] Building C object src/CMakeFiles/rapmap.dir/xxhash.c.o cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/digestpp -I/build/reproducible-path/rapmap-0.15.0+dfsg/external -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/cereal/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/install/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/rapmap.dir/xxhash.c.o -MF CMakeFiles/rapmap.dir/xxhash.c.o.d -o CMakeFiles/rapmap.dir/xxhash.c.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/xxhash.c [ 88%] Building C object src/CMakeFiles/rapmap.dir/bit_array.c.o cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/digestpp -I/build/reproducible-path/rapmap-0.15.0+dfsg/external -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/cereal/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/install/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/rapmap.dir/bit_array.c.o -MF CMakeFiles/rapmap.dir/bit_array.c.o.d -o CMakeFiles/rapmap.dir/bit_array.c.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/bit_array.c [ 92%] Building CXX object src/CMakeFiles/rapmap.dir/edlib.cpp.o cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/digestpp -I/build/reproducible-path/rapmap-0.15.0+dfsg/external -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/cereal/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/edlib.cpp.o -MF CMakeFiles/rapmap.dir/edlib.cpp.o.d -o CMakeFiles/rapmap.dir/edlib.cpp.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/edlib.cpp [ 96%] Building CXX object src/CMakeFiles/rapmap.dir/metro/metrohash64.cpp.o cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/digestpp -I/build/reproducible-path/rapmap-0.15.0+dfsg/external -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/cereal/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/metro/metrohash64.cpp.o -MF CMakeFiles/rapmap.dir/metro/metrohash64.cpp.o.d -o CMakeFiles/rapmap.dir/metro/metrohash64.cpp.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/metro/metrohash64.cpp In file included from /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/spdlog_impl.h:12, from /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/spdlog.h:192, from /build/reproducible-path/rapmap-0.15.0+dfsg/include/RapMapUtils.hpp:33, from /build/reproducible-path/rapmap-0.15.0+dfsg/include/HitManager.hpp:25, from /build/reproducible-path/rapmap-0.15.0+dfsg/src/HitManager.cpp:22: /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 197 | registry_t() {} | ^ /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >' /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 198 | registry_t(const registry_t&) = delete; | ^ /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >' In file included from /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/spdlog_impl.h:12, from /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/spdlog.h:192, from /build/reproducible-path/rapmap-0.15.0+dfsg/include/RapMapUtils.hpp:33, from /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapUtils.cpp:26: /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 197 | registry_t() {} | ^ /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >' /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 198 | registry_t(const registry_t&) = delete; | ^ /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >' In file included from /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/spdlog_impl.h:12, from /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/spdlog.h:192, from /build/reproducible-path/rapmap-0.15.0+dfsg/include/RapMapUtils.hpp:33, from /build/reproducible-path/rapmap-0.15.0+dfsg/include/FrugalBooMap.hpp:5, from /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndex.cpp:23: /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 197 | registry_t() {} | ^ /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >' /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 198 | registry_t(const registry_t&) = delete; | ^ /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >' In file included from /build/reproducible-path/rapmap-0.15.0+dfsg/include/FastxParser.hpp:17, from /build/reproducible-path/rapmap-0.15.0+dfsg/src/FastxParser.cpp:1: /build/reproducible-path/rapmap-0.15.0+dfsg/include/concurrentqueue.h: In instantiation of 'void moodycamel::details::swap_relaxed(std::atomic<_ITp>&, std::atomic<_ITp>&) [with T = std::thread::id]': /build/reproducible-path/rapmap-0.15.0+dfsg/include/concurrentqueue.h:3228:26: required from 'void moodycamel::ConcurrentQueue::ImplicitProducerKVP::swap(moodycamel::ConcurrentQueue::ImplicitProducerKVP&) [with T = std::unique_ptr, std::default_delete > >; Traits = moodycamel::ConcurrentQueueDefaultTraits]' 3228 | details::swap_relaxed(key, other.key); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/concurrentqueue.h:3221:4: required from 'moodycamel::ConcurrentQueue::ImplicitProducerKVP& moodycamel::ConcurrentQueue::ImplicitProducerKVP::operator=(moodycamel::ConcurrentQueue::ImplicitProducerKVP&&) [with T = std::unique_ptr, std::default_delete > >; Traits = moodycamel::ConcurrentQueueDefaultTraits]' 3221 | swap(other); | ^~~~ /usr/include/c++/14/bits/move.h:222:11: required from 'std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = moodycamel::ConcurrentQueue, default_delete > >, moodycamel::ConcurrentQueueDefaultTraits>::ImplicitProducerKVP; _Require<__not_<__is_tuple_like<_Tp> >, is_move_constructible<_Tp>, is_move_assignable<_Tp> > = void]' 222 | __a = _GLIBCXX_MOVE(__b); | ^ /usr/include/c++/14/bits/stl_algobase.h:185:11: required from 'void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = moodycamel::ConcurrentQueue, default_delete > >, moodycamel::ConcurrentQueueDefaultTraits>::ImplicitProducerKVP*; _ForwardIterator2 = moodycamel::ConcurrentQueue, default_delete > >, moodycamel::ConcurrentQueueDefaultTraits>::ImplicitProducerKVP*]' 185 | swap(*__a, *__b); | ~~~~^~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algobase.h:215:16: required from '_ForwardIterator2 std::swap_ranges(_ForwardIterator1, _ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = moodycamel::ConcurrentQueue, default_delete > >, moodycamel::ConcurrentQueueDefaultTraits>::ImplicitProducerKVP*; _ForwardIterator2 = moodycamel::ConcurrentQueue, default_delete > >, moodycamel::ConcurrentQueueDefaultTraits>::ImplicitProducerKVP*]' 215 | std::iter_swap(__first1, __first2); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/array:127:25: required from 'void std::array<_Tp, _Nm>::swap(std::array<_Tp, _Nm>&) [with _Tp = moodycamel::ConcurrentQueue, std::default_delete > >, moodycamel::ConcurrentQueueDefaultTraits>::ImplicitProducerKVP; long unsigned int _Nm = 32]' 127 | { std::swap_ranges(begin(), end(), __other.begin()); } | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/concurrentqueue.h:3264:42: required from 'void moodycamel::ConcurrentQueue::swap_implicit_producer_hashes(moodycamel::ConcurrentQueue&) [with T = std::unique_ptr, std::default_delete > >; Traits = moodycamel::ConcurrentQueueDefaultTraits]' 3264 | initialImplicitProducerHashEntries.swap(other.initialImplicitProducerHashEntries); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/concurrentqueue.h:892:3: required from 'moodycamel::ConcurrentQueue& moodycamel::ConcurrentQueue::swap_internal(moodycamel::ConcurrentQueue&) [with T = std::unique_ptr, std::default_delete > >; Traits = moodycamel::ConcurrentQueueDefaultTraits]' 892 | swap_implicit_producer_hashes(other); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/concurrentqueue.h:863:10: required from 'moodycamel::ConcurrentQueue& moodycamel::ConcurrentQueue::operator=(moodycamel::ConcurrentQueue&&) [with T = std::unique_ptr, std::default_delete > >; Traits = moodycamel::ConcurrentQueueDefaultTraits]' 863 | return swap_internal(other); | ^~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/FastxParser.cpp:46:14: required from 'fastx_parser::FastxParser::FastxParser(std::vector >, std::vector >, uint32_t, uint32_t, uint32_t) [with T = fastx_parser::ReadSeq; uint32_t = unsigned int]' 46 | readQueue_ = moodycamel::ConcurrentQueue>>( | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 | 4 * numConsumers, numParsers, 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/FastxParser.cpp:405:16: required from here 405 | template class FastxParser; | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/concurrentqueue.h:446:19: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 446 | T temp = std::move(left.load(std::memory_order_relaxed)); | ^~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/concurrentqueue.h:446:19: note: remove 'std::move' call /build/reproducible-path/rapmap-0.15.0+dfsg/include/concurrentqueue.h:447:27: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 447 | left.store(std::move(right.load(std::memory_order_relaxed)), std::memory_order_relaxed); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/concurrentqueue.h:447:27: note: remove 'std::move' call In file included from /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/spdlog_impl.h:12, from /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/spdlog.h:192, from /build/reproducible-path/rapmap-0.15.0+dfsg/include/IndexHeader.hpp:25, from /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMap.cpp:30: /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 197 | registry_t() {} | ^ /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >' /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 198 | registry_t(const registry_t&) = delete; | ^ /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >' In file included from /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/spdlog_impl.h:12, from /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/spdlog.h:192, from /build/reproducible-path/rapmap-0.15.0+dfsg/include/RapMapUtils.hpp:33, from /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:50: /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 197 | registry_t() {} | ^ /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >' /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 198 | registry_t(const registry_t&) = delete; | ^ /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >' In file included from /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/spdlog_impl.h:12, from /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/spdlog.h:192, from /build/reproducible-path/rapmap-0.15.0+dfsg/include/RapMapUtils.hpp:33, from /build/reproducible-path/rapmap-0.15.0+dfsg/include/HitManager.hpp:25, from /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:50: /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 197 | registry_t() {} | ^ /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >' /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 198 | registry_t(const registry_t&) = delete; | ^ /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >' In file included from /build/reproducible-path/rapmap-0.15.0+dfsg/include/zstr/zstr.hpp:16, from /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:62: /build/reproducible-path/rapmap-0.15.0+dfsg/include/zstr/strict_fstream.hpp: In static member function 'static void strict_fstream::detail::static_method_holder::check_peek(std::istream*, const std::string&, std::ios_base::openmode)': /build/reproducible-path/rapmap-0.15.0+dfsg/include/zstr/strict_fstream.hpp:128:39: warning: catching polymorphic type 'class std::ios_base::failure' by value [-Wcatch-value=] 128 | catch (std::ios_base::failure e) {} | ^ In file included from /build/reproducible-path/rapmap-0.15.0+dfsg/include/RapMapUtils.hpp:29: /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup::_set_val(value_type*, reference) [with T = std::pair > >; Alloc = spp::libc_allocator > > >; value_type = std::pair > >; reference = std::pair > >&]': /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1440:21: required from 'void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair > >; T = std::pair > >; Alloc = spp::libc_allocator > > >; allocator_type = spp::libc_allocator > > >; size_type = unsigned char]' 1440 | _set_val(&_group[offset], val); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from 'spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair > >; T = std::pair > >; Alloc = spp::libc_allocator > > >; pointer = std::pair > >*; allocator_type = spp::libc_allocator > > >; size_type = unsigned char]' 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from 'spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair > >; T = std::pair > >; Alloc = spp::libc_allocator > > >; reference = std::pair > >&; size_type = long unsigned int]' 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair > >; Value = std::pair > >; Key = long unsigned int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map > >::SelectKey; SetKey = spp::sparse_hash_map > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > > >; reference = std::pair > >&; size_type = long unsigned int]' 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map > >::DefaultValue; KT = long unsigned int&; Value = std::pair > >; Key = long unsigned int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map > >::SelectKey; SetKey = spp::sparse_hash_map > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > > >; value_type = std::pair > >]' 3288 | return _insert_at(def, erased ? erased_pos : bucknum, erased); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3810:57: required from 'spp::sparse_hash_map::mapped_type& spp::sparse_hash_map::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = std::vector >; HashFcn = spp::spp_hash; EqualKey = std::equal_to; Alloc = spp::libc_allocator > > >; mapped_type = std::vector >]' 3810 | return rep.template find_or_insert(std::forward(key)).second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:652:33: required from 'void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]' 652 | duplicateNames[dupInfo.txId].push_back(processedName); | ~~~~~~~~~~~~~~^ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:1032:21: required from here 1032 | indexTranscriptsSA(transcriptParserPtr.get(), indexDir, decoyNames, noClipPolyA, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 | usePerfectHash, numPerfectHashThreads, keepDuplicates, sepStr, iomutex, jointLog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup > >, spp::libc_allocator > > > >::value_type' {aka 'std::pair > >'} to 'spp::sparsegroup > >, spp::libc_allocator > > > >::mutable_reference' {aka 'std::pair > >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = std::vector >; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = long unsigned int; _T2 = std::vector >]' [-Wcast-user-defined] 1355 | *(mutable_pointer)p = std::move((mutable_reference)val); | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup::_init_val(mutable_value_type*, reference) [with T = std::pair > >; Alloc = spp::libc_allocator > > >; mutable_value_type = std::pair > >; reference = std::pair > >&]': /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1407:22: required from 'void spp::sparsegroup::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair > >; T = std::pair > >; Alloc = spp::libc_allocator > > >; allocator_type = spp::libc_allocator > > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant]' 1407 | _init_val((mutable_pointer)&_group[num_items], val); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1435:21: required from 'void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair > >; T = std::pair > >; Alloc = spp::libc_allocator > > >; allocator_type = spp::libc_allocator > > >; size_type = unsigned char]' 1435 | _set_aux(alloc, offset, val, check_alloc_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from 'spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair > >; T = std::pair > >; Alloc = spp::libc_allocator > > >; pointer = std::pair > >*; allocator_type = spp::libc_allocator > > >; size_type = unsigned char]' 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from 'spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair > >; T = std::pair > >; Alloc = spp::libc_allocator > > >; reference = std::pair > >&; size_type = long unsigned int]' 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair > >; Value = std::pair > >; Key = long unsigned int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map > >::SelectKey; SetKey = spp::sparse_hash_map > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > > >; reference = std::pair > >&; size_type = long unsigned int]' 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map > >::DefaultValue; KT = long unsigned int&; Value = std::pair > >; Key = long unsigned int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map > >::SelectKey; SetKey = spp::sparse_hash_map > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > > >; value_type = std::pair > >]' 3288 | return _insert_at(def, erased ? erased_pos : bucknum, erased); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3810:57: required from 'spp::sparse_hash_map::mapped_type& spp::sparse_hash_map::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = std::vector >; HashFcn = spp::spp_hash; EqualKey = std::equal_to; Alloc = spp::libc_allocator > > >; mapped_type = std::vector >]' 3810 | return rep.template find_or_insert(std::forward(key)).second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:652:33: required from 'void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]' 652 | duplicateNames[dupInfo.txId].push_back(processedName); | ~~~~~~~~~~~~~~^ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:1032:21: required from here 1032 | indexTranscriptsSA(transcriptParserPtr.get(), indexDir, decoyNames, noClipPolyA, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 | usePerfectHash, numPerfectHashThreads, keepDuplicates, sepStr, iomutex, jointLog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup > >, spp::libc_allocator > > > >::value_type' {aka 'std::pair > >'} to 'spp::sparsegroup > >, spp::libc_allocator > > > >::mutable_reference' {aka 'std::pair > >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = std::vector >; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = long unsigned int; _T2 = std::vector >]' [-Wcast-user-defined] 1339 | ::new (p) value_type(std::move((mutable_reference)val)); | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup::_set_val(value_type*, reference) [with T = std::pair >; Alloc = spp::libc_allocator > >; value_type = std::pair >; reference = std::pair >&]': /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1440:21: required from 'void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; allocator_type = spp::libc_allocator > >; size_type = unsigned char]' 1440 | _set_val(&_group[offset], val); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from 'spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; pointer = std::pair >*; allocator_type = spp::libc_allocator > >; size_type = unsigned char]' 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from 'spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; reference = std::pair >&; size_type = long unsigned int]' 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair >; Value = std::pair >; Key = long unsigned int; HashFcn = rapmap::utils::KmerKeyHasher; ExtractKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SelectKey; SetKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; reference = std::pair >&; size_type = long unsigned int]' 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::DefaultValue; KT = long unsigned int&; Value = std::pair >; Key = long unsigned int; HashFcn = rapmap::utils::KmerKeyHasher; ExtractKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SelectKey; SetKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; value_type = std::pair >]' 3288 | return _insert_at(def, erased ? erased_pos : bucknum, erased); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3810:57: required from 'spp::sparse_hash_map::mapped_type& spp::sparse_hash_map::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = rapmap::utils::SAInterval; HashFcn = rapmap::utils::KmerKeyHasher; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; mapped_type = rapmap::utils::SAInterval]' 3810 | return rep.template find_or_insert(std::forward(key)).second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:319:18: required from 'bool buildHash(const std::string&, nonstd::sv_lite::string_view, size_t, uint32_t, std::vector<_RealType>&) [with IndexT = long int; std::string = std::__cxx11::basic_string; nonstd::sv_lite::string_view = nonstd::sv_lite::basic_string_view; size_t = long unsigned int; uint32_t = unsigned int]' 319 | khash[bits] = {start, stop}; | ~~~~~^ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:842:34: required from 'void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]' 842 | success = buildHash(outputDir, concatText, tlen, k, SA); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:1032:21: required from here 1032 | indexTranscriptsSA(transcriptParserPtr.get(), indexDir, decoyNames, noClipPolyA, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 | usePerfectHash, numPerfectHashThreads, keepDuplicates, sepStr, iomutex, jointLog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup >, spp::libc_allocator > > >::value_type' {aka 'std::pair >'} to 'spp::sparsegroup >, spp::libc_allocator > > >::mutable_reference' {aka 'std::pair >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = rapmap::utils::SAInterval; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = long unsigned int; _T2 = rapmap::utils::SAInterval]' [-Wcast-user-defined] 1355 | *(mutable_pointer)p = std::move((mutable_reference)val); | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup::_set_val(value_type*, reference) [with T = std::pair >; Alloc = spp::libc_allocator > >; value_type = std::pair >; reference = std::pair >&]': /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1440:21: required from 'void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; allocator_type = spp::libc_allocator > >; size_type = unsigned char]' 1440 | _set_val(&_group[offset], val); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from 'spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; pointer = std::pair >*; allocator_type = spp::libc_allocator > >; size_type = unsigned char]' 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from 'spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; reference = std::pair >&; size_type = long unsigned int]' 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair >; Value = std::pair >; Key = long unsigned int; HashFcn = rapmap::utils::KmerKeyHasher; ExtractKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SelectKey; SetKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; reference = std::pair >&; size_type = long unsigned int]' 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::DefaultValue; KT = long unsigned int&; Value = std::pair >; Key = long unsigned int; HashFcn = rapmap::utils::KmerKeyHasher; ExtractKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SelectKey; SetKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; value_type = std::pair >]' 3288 | return _insert_at(def, erased ? erased_pos : bucknum, erased); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3810:57: required from 'spp::sparse_hash_map::mapped_type& spp::sparse_hash_map::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = rapmap::utils::SAInterval; HashFcn = rapmap::utils::KmerKeyHasher; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; mapped_type = rapmap::utils::SAInterval]' 3810 | return rep.template find_or_insert(std::forward(key)).second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:319:18: required from 'bool buildHash(const std::string&, nonstd::sv_lite::string_view, size_t, uint32_t, std::vector<_RealType>&) [with IndexT = int; std::string = std::__cxx11::basic_string; nonstd::sv_lite::string_view = nonstd::sv_lite::basic_string_view; size_t = long unsigned int; uint32_t = unsigned int]' 319 | khash[bits] = {start, stop}; | ~~~~~^ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:863:34: required from 'void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]' 863 | success = buildHash(outputDir, concatText, tlen, k, SA); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:1032:21: required from here 1032 | indexTranscriptsSA(transcriptParserPtr.get(), indexDir, decoyNames, noClipPolyA, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 | usePerfectHash, numPerfectHashThreads, keepDuplicates, sepStr, iomutex, jointLog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup >, spp::libc_allocator > > >::value_type' {aka 'std::pair >'} to 'spp::sparsegroup >, spp::libc_allocator > > >::mutable_reference' {aka 'std::pair >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = rapmap::utils::SAInterval; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = long unsigned int; _T2 = rapmap::utils::SAInterval]' [-Wcast-user-defined] 1355 | *(mutable_pointer)p = std::move((mutable_reference)val); | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup::_set_val(value_type*, reference) [with T = std::pair; Alloc = spp::libc_allocator >; value_type = std::pair; reference = std::pair&]': /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1440:21: required from 'void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char]' 1440 | _set_val(&_group[offset], val); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from 'spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; pointer = std::pair*; allocator_type = spp::libc_allocator >; size_type = unsigned char]' 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from 'spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]' 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair; Value = std::pair; Key = long int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]' 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::DefaultValue; KT = long int; Value = std::pair; Key = long int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; value_type = std::pair]' 3288 | return _insert_at(def, erased ? erased_pos : bucknum, erased); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3810:57: required from 'spp::sparse_hash_map::mapped_type& spp::sparse_hash_map::operator[](KT&&) [with KT = long int; Key = long int; T = long int; HashFcn = spp::spp_hash; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; mapped_type = long int]' 3810 | return rep.template find_or_insert(std::forward(key)).second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/FrugalBooMap.hpp:106:22: required from 'void FrugalBooMap::add(KeyT&&, ValueT&&) [with KeyT = long unsigned int; ValueT = rapmap::utils::SAInterval]' 106 | overflow_[v.begin()] = l; | ~~~~~~~~~^ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:162:24: required from 'bool buildPerfectHash(const std::string&, nonstd::sv_lite::string_view, size_t, uint32_t, std::vector<_RealType>&, uint32_t) [with IndexT = long int; std::string = std::__cxx11::basic_string; nonstd::sv_lite::string_view = nonstd::sv_lite::basic_string_view; size_t = long unsigned int; uint32_t = unsigned int]' 162 | intervals.add(std::move(bits), {start, stop}); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:839:41: required from 'void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]' 839 | success = buildPerfectHash(outputDir, concatText, tlen, k, SA, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 | numHashThreads); | ~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:1032:21: required from here 1032 | indexTranscriptsSA(transcriptParserPtr.get(), indexDir, decoyNames, noClipPolyA, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 | usePerfectHash, numPerfectHashThreads, keepDuplicates, sepStr, iomutex, jointLog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup, spp::libc_allocator > >::value_type' {aka 'std::pair'} to 'spp::sparsegroup, spp::libc_allocator > >::mutable_reference' {aka 'std::pair&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long int; _U2 = long int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = long int; _T2 = long int]' [-Wcast-user-defined] 1355 | *(mutable_pointer)p = std::move((mutable_reference)val); | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup::_init_val(mutable_value_type*, reference) [with T = std::pair >; Alloc = spp::libc_allocator > >; mutable_value_type = std::pair >; reference = std::pair >&]': /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1407:22: required from 'void spp::sparsegroup::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; allocator_type = spp::libc_allocator > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant]' 1407 | _init_val((mutable_pointer)&_group[num_items], val); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1435:21: required from 'void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; allocator_type = spp::libc_allocator > >; size_type = unsigned char]' 1435 | _set_aux(alloc, offset, val, check_alloc_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from 'spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; pointer = std::pair >*; allocator_type = spp::libc_allocator > >; size_type = unsigned char]' 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from 'spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; reference = std::pair >&; size_type = long unsigned int]' 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair >; Value = std::pair >; Key = long unsigned int; HashFcn = rapmap::utils::KmerKeyHasher; ExtractKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SelectKey; SetKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; reference = std::pair >&; size_type = long unsigned int]' 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::DefaultValue; KT = long unsigned int&; Value = std::pair >; Key = long unsigned int; HashFcn = rapmap::utils::KmerKeyHasher; ExtractKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SelectKey; SetKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; value_type = std::pair >]' 3288 | return _insert_at(def, erased ? erased_pos : bucknum, erased); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3810:57: required from 'spp::sparse_hash_map::mapped_type& spp::sparse_hash_map::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = rapmap::utils::SAInterval; HashFcn = rapmap::utils::KmerKeyHasher; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; mapped_type = rapmap::utils::SAInterval]' 3810 | return rep.template find_or_insert(std::forward(key)).second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:319:18: required from 'bool buildHash(const std::string&, nonstd::sv_lite::string_view, size_t, uint32_t, std::vector<_RealType>&) [with IndexT = long int; std::string = std::__cxx11::basic_string; nonstd::sv_lite::string_view = nonstd::sv_lite::basic_string_view; size_t = long unsigned int; uint32_t = unsigned int]' 319 | khash[bits] = {start, stop}; | ~~~~~^ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:842:34: required from 'void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]' 842 | success = buildHash(outputDir, concatText, tlen, k, SA); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:1032:21: required from here 1032 | indexTranscriptsSA(transcriptParserPtr.get(), indexDir, decoyNames, noClipPolyA, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 | usePerfectHash, numPerfectHashThreads, keepDuplicates, sepStr, iomutex, jointLog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup >, spp::libc_allocator > > >::value_type' {aka 'std::pair >'} to 'spp::sparsegroup >, spp::libc_allocator > > >::mutable_reference' {aka 'std::pair >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = rapmap::utils::SAInterval; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = long unsigned int; _T2 = rapmap::utils::SAInterval]' [-Wcast-user-defined] 1339 | ::new (p) value_type(std::move((mutable_reference)val)); | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup::_set_val(value_type*, reference) [with T = std::pair; Alloc = spp::libc_allocator >; value_type = std::pair; reference = std::pair&]': /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1440:21: required from 'void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char]' 1440 | _set_val(&_group[offset], val); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from 'spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; pointer = std::pair*; allocator_type = spp::libc_allocator >; size_type = unsigned char]' 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from 'spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]' 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair; Value = std::pair; Key = int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]' 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::DefaultValue; KT = int; Value = std::pair; Key = int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; value_type = std::pair]' 3288 | return _insert_at(def, erased ? erased_pos : bucknum, erased); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3810:57: required from 'spp::sparse_hash_map::mapped_type& spp::sparse_hash_map::operator[](KT&&) [with KT = int; Key = int; T = int; HashFcn = spp::spp_hash; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; mapped_type = int]' 3810 | return rep.template find_or_insert(std::forward(key)).second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/FrugalBooMap.hpp:106:22: required from 'void FrugalBooMap::add(KeyT&&, ValueT&&) [with KeyT = long unsigned int; ValueT = rapmap::utils::SAInterval]' 106 | overflow_[v.begin()] = l; | ~~~~~~~~~^ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:162:24: required from 'bool buildPerfectHash(const std::string&, nonstd::sv_lite::string_view, size_t, uint32_t, std::vector<_RealType>&, uint32_t) [with IndexT = int; std::string = std::__cxx11::basic_string; nonstd::sv_lite::string_view = nonstd::sv_lite::basic_string_view; size_t = long unsigned int; uint32_t = unsigned int]' 162 | intervals.add(std::move(bits), {start, stop}); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:860:41: required from 'void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]' 860 | success = buildPerfectHash(outputDir, concatText, tlen, k, SA, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 | numHashThreads); | ~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:1032:21: required from here 1032 | indexTranscriptsSA(transcriptParserPtr.get(), indexDir, decoyNames, noClipPolyA, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 | usePerfectHash, numPerfectHashThreads, keepDuplicates, sepStr, iomutex, jointLog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup, spp::libc_allocator > >::value_type' {aka 'std::pair'} to 'spp::sparsegroup, spp::libc_allocator > >::mutable_reference' {aka 'std::pair&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const int; _U2 = int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = int; _T2 = int]' [-Wcast-user-defined] 1355 | *(mutable_pointer)p = std::move((mutable_reference)val); | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup::_init_val(mutable_value_type*, reference) [with T = std::pair >; Alloc = spp::libc_allocator > >; mutable_value_type = std::pair >; reference = std::pair >&]': /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1407:22: required from 'void spp::sparsegroup::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; allocator_type = spp::libc_allocator > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant]' 1407 | _init_val((mutable_pointer)&_group[num_items], val); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1435:21: required from 'void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; allocator_type = spp::libc_allocator > >; size_type = unsigned char]' 1435 | _set_aux(alloc, offset, val, check_alloc_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from 'spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; pointer = std::pair >*; allocator_type = spp::libc_allocator > >; size_type = unsigned char]' 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from 'spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; reference = std::pair >&; size_type = long unsigned int]' 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair >; Value = std::pair >; Key = long unsigned int; HashFcn = rapmap::utils::KmerKeyHasher; ExtractKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SelectKey; SetKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; reference = std::pair >&; size_type = long unsigned int]' 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::DefaultValue; KT = long unsigned int&; Value = std::pair >; Key = long unsigned int; HashFcn = rapmap::utils::KmerKeyHasher; ExtractKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SelectKey; SetKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; value_type = std::pair >]' 3288 | return _insert_at(def, erased ? erased_pos : bucknum, erased); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3810:57: required from 'spp::sparse_hash_map::mapped_type& spp::sparse_hash_map::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = rapmap::utils::SAInterval; HashFcn = rapmap::utils::KmerKeyHasher; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; mapped_type = rapmap::utils::SAInterval]' 3810 | return rep.template find_or_insert(std::forward(key)).second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:319:18: required from 'bool buildHash(const std::string&, nonstd::sv_lite::string_view, size_t, uint32_t, std::vector<_RealType>&) [with IndexT = int; std::string = std::__cxx11::basic_string; nonstd::sv_lite::string_view = nonstd::sv_lite::basic_string_view; size_t = long unsigned int; uint32_t = unsigned int]' 319 | khash[bits] = {start, stop}; | ~~~~~^ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:863:34: required from 'void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]' 863 | success = buildHash(outputDir, concatText, tlen, k, SA); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:1032:21: required from here 1032 | indexTranscriptsSA(transcriptParserPtr.get(), indexDir, decoyNames, noClipPolyA, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 | usePerfectHash, numPerfectHashThreads, keepDuplicates, sepStr, iomutex, jointLog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup >, spp::libc_allocator > > >::value_type' {aka 'std::pair >'} to 'spp::sparsegroup >, spp::libc_allocator > > >::mutable_reference' {aka 'std::pair >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = rapmap::utils::SAInterval; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = long unsigned int; _T2 = rapmap::utils::SAInterval]' [-Wcast-user-defined] 1339 | ::new (p) value_type(std::move((mutable_reference)val)); | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup::_init_val(mutable_value_type*, reference) [with T = std::pair; Alloc = spp::libc_allocator >; mutable_value_type = std::pair; reference = std::pair&]': /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1390:18: required from 'void spp::sparsegroup::_set_aux(allocator_type&, size_type, Val&, realloc_ok_type) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char; realloc_ok_type = spp::integral_constant]' 1390 | _init_val((mutable_pointer)(_group + offset), val); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1435:21: required from 'void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char]' 1435 | _set_aux(alloc, offset, val, check_alloc_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from 'spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; pointer = std::pair*; allocator_type = spp::libc_allocator >; size_type = unsigned char]' 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from 'spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]' 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair; Value = std::pair; Key = long int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]' 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::DefaultValue; KT = long int; Value = std::pair; Key = long int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; value_type = std::pair]' 3288 | return _insert_at(def, erased ? erased_pos : bucknum, erased); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3810:57: required from 'spp::sparse_hash_map::mapped_type& spp::sparse_hash_map::operator[](KT&&) [with KT = long int; Key = long int; T = long int; HashFcn = spp::spp_hash; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; mapped_type = long int]' 3810 | return rep.template find_or_insert(std::forward(key)).second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/FrugalBooMap.hpp:106:22: required from 'void FrugalBooMap::add(KeyT&&, ValueT&&) [with KeyT = long unsigned int; ValueT = rapmap::utils::SAInterval]' 106 | overflow_[v.begin()] = l; | ~~~~~~~~~^ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:162:24: required from 'bool buildPerfectHash(const std::string&, nonstd::sv_lite::string_view, size_t, uint32_t, std::vector<_RealType>&, uint32_t) [with IndexT = long int; std::string = std::__cxx11::basic_string; nonstd::sv_lite::string_view = nonstd::sv_lite::basic_string_view; size_t = long unsigned int; uint32_t = unsigned int]' 162 | intervals.add(std::move(bits), {start, stop}); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:839:41: required from 'void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]' 839 | success = buildPerfectHash(outputDir, concatText, tlen, k, SA, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 | numHashThreads); | ~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:1032:21: required from here 1032 | indexTranscriptsSA(transcriptParserPtr.get(), indexDir, decoyNames, noClipPolyA, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 | usePerfectHash, numPerfectHashThreads, keepDuplicates, sepStr, iomutex, jointLog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup, spp::libc_allocator > >::value_type' {aka 'std::pair'} to 'spp::sparsegroup, spp::libc_allocator > >::mutable_reference' {aka 'std::pair&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long int; _U2 = long int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = long int; _T2 = long int]' [-Wcast-user-defined] 1339 | ::new (p) value_type(std::move((mutable_reference)val)); | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup::_init_val(mutable_value_type*, reference) [with T = std::pair; Alloc = spp::libc_allocator >; mutable_value_type = std::pair; reference = std::pair&]': /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1390:18: required from 'void spp::sparsegroup::_set_aux(allocator_type&, size_type, Val&, realloc_ok_type) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char; realloc_ok_type = spp::integral_constant]' 1390 | _init_val((mutable_pointer)(_group + offset), val); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1435:21: required from 'void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char]' 1435 | _set_aux(alloc, offset, val, check_alloc_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from 'spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; pointer = std::pair*; allocator_type = spp::libc_allocator >; size_type = unsigned char]' 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from 'spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]' 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair; Value = std::pair; Key = int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]' 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::DefaultValue; KT = int; Value = std::pair; Key = int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; value_type = std::pair]' 3288 | return _insert_at(def, erased ? erased_pos : bucknum, erased); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3810:57: required from 'spp::sparse_hash_map::mapped_type& spp::sparse_hash_map::operator[](KT&&) [with KT = int; Key = int; T = int; HashFcn = spp::spp_hash; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; mapped_type = int]' 3810 | return rep.template find_or_insert(std::forward(key)).second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/FrugalBooMap.hpp:106:22: required from 'void FrugalBooMap::add(KeyT&&, ValueT&&) [with KeyT = long unsigned int; ValueT = rapmap::utils::SAInterval]' 106 | overflow_[v.begin()] = l; | ~~~~~~~~~^ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:162:24: required from 'bool buildPerfectHash(const std::string&, nonstd::sv_lite::string_view, size_t, uint32_t, std::vector<_RealType>&, uint32_t) [with IndexT = int; std::string = std::__cxx11::basic_string; nonstd::sv_lite::string_view = nonstd::sv_lite::basic_string_view; size_t = long unsigned int; uint32_t = unsigned int]' 162 | intervals.add(std::move(bits), {start, stop}); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:860:41: required from 'void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]' 860 | success = buildPerfectHash(outputDir, concatText, tlen, k, SA, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 | numHashThreads); | ~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:1032:21: required from here 1032 | indexTranscriptsSA(transcriptParserPtr.get(), indexDir, decoyNames, noClipPolyA, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 | usePerfectHash, numPerfectHashThreads, keepDuplicates, sepStr, iomutex, jointLog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup, spp::libc_allocator > >::value_type' {aka 'std::pair'} to 'spp::sparsegroup, spp::libc_allocator > >::mutable_reference' {aka 'std::pair&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const int; _U2 = int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = int; _T2 = int]' [-Wcast-user-defined] 1339 | ::new (p) value_type(std::move((mutable_reference)val)); | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/rapmap-0.15.0+dfsg/include/RapMapUtils.hpp:29: /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup::_set_val(value_type*, reference) [with T = std::pair; Alloc = spp::libc_allocator >; value_type = std::pair; reference = std::pair&]': /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1440:21: required from 'void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char]' 1440 | _set_val(&_group[offset], val); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from 'spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; pointer = std::pair*; allocator_type = spp::libc_allocator >; size_type = unsigned char]' 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from 'spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]' 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair; Value = std::pair; Key = long int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]' 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/rapmap-0.15.0+dfsg/include/FrugalBooMap.hpp:162:30: required from 'FrugalBooMap::IteratorT FrugalBooMap::find(const KeyT&) [with KeyT = long unsigned int; ValueT = rapmap::utils::SAInterval; IteratorT = KVProxy<__gnu_cxx::__normal_iterator > >, rapmap::utils::SAInterval >]' 162 | l = overflow_[ind]; | ~~~~~~~~~^ /build/reproducible-path/rapmap-0.15.0+dfsg/include/SACollector.hpp:196:25: required from 'bool SACollector::operator()(std::string&, SASearcher&, rapmap::hit_manager::HitCollectorInfo >&) [with RapMapIndexT = RapMapSAIndex > >; std::string = std::__cxx11::basic_string; typename RapMapIndexT::IndexType = long int]' 196 | merIt = khash.find(mer.word(0));//get_bits(0, 2 * k)); | ~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:472:35: required from 'void processReadsPairSA(paired_parser*, RapMapIndexT&, MutexT*, std::shared_ptr, HitCounters&, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >; MutexT = std::mutex; paired_parser = fastx_parser::FastxParser; HitCounters = rapmap::utils::HitCounters]' 472 | bool lh = hitCollector(rpair.first.seq, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 473 | saSearcher, | ~~~~~~~~~~~ 474 | leftHCInfo); | ~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:765:37: required from 'bool spawnProcessReadsThreads(uint32_t, paired_parser*, RapMapIndexT&, MutexT&, std::shared_ptr, HitCounters&, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >; MutexT = std::mutex; uint32_t = unsigned int; paired_parser = fastx_parser::FastxParser; HitCounters = rapmap::utils::HitCounters]' 765 | threads.emplace_back(processReadsPairSA, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 | parser, | ~~~~~~~ 767 | std::ref(rmi), | ~~~~~~~~~~~~~~ 768 | &iomutex, | ~~~~~~~~~ 769 | outQueue, | ~~~~~~~~~ 770 | std::ref(hctr), | ~~~~~~~~~~~~~~~ 771 | mopts); | ~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:872:31: required from 'bool mapReads(RapMapIndexT&, std::shared_ptr, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >]' 872 | spawnProcessReadsThreads(nthread, pairParserPtr.get(), rmi, iomutex, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 | outLog, hctrs, mopts); | ~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:1217:29: required from here 1217 | success = mapReads(rmi, consoleLog, &mopts); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup, spp::libc_allocator > >::value_type' {aka 'std::pair'} to 'spp::sparsegroup, spp::libc_allocator > >::mutable_reference' {aka 'std::pair&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long int; _U2 = long int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = long int; _T2 = long int]' [-Wcast-user-defined] 1355 | *(mutable_pointer)p = std::move((mutable_reference)val); | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup::_set_val(value_type*, reference) [with T = std::pair; Alloc = spp::libc_allocator >; value_type = std::pair; reference = std::pair&]': /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1440:21: required from 'void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char]' 1440 | _set_val(&_group[offset], val); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from 'spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; pointer = std::pair*; allocator_type = spp::libc_allocator >; size_type = unsigned char]' 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from 'spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]' 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair; Value = std::pair; Key = int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]' 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/rapmap-0.15.0+dfsg/include/FrugalBooMap.hpp:162:30: required from 'FrugalBooMap::IteratorT FrugalBooMap::find(const KeyT&) [with KeyT = long unsigned int; ValueT = rapmap::utils::SAInterval; IteratorT = KVProxy<__gnu_cxx::__normal_iterator >, rapmap::utils::SAInterval >]' 162 | l = overflow_[ind]; | ~~~~~~~~~^ /build/reproducible-path/rapmap-0.15.0+dfsg/include/SACollector.hpp:196:25: required from 'bool SACollector::operator()(std::string&, SASearcher&, rapmap::hit_manager::HitCollectorInfo >&) [with RapMapIndexT = RapMapSAIndex > >; std::string = std::__cxx11::basic_string; typename RapMapIndexT::IndexType = int]' 196 | merIt = khash.find(mer.word(0));//get_bits(0, 2 * k)); | ~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:472:35: required from 'void processReadsPairSA(paired_parser*, RapMapIndexT&, MutexT*, std::shared_ptr, HitCounters&, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >; MutexT = std::mutex; paired_parser = fastx_parser::FastxParser; HitCounters = rapmap::utils::HitCounters]' 472 | bool lh = hitCollector(rpair.first.seq, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 473 | saSearcher, | ~~~~~~~~~~~ 474 | leftHCInfo); | ~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:765:37: required from 'bool spawnProcessReadsThreads(uint32_t, paired_parser*, RapMapIndexT&, MutexT&, std::shared_ptr, HitCounters&, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >; MutexT = std::mutex; uint32_t = unsigned int; paired_parser = fastx_parser::FastxParser; HitCounters = rapmap::utils::HitCounters]' 765 | threads.emplace_back(processReadsPairSA, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 | parser, | ~~~~~~~ 767 | std::ref(rmi), | ~~~~~~~~~~~~~~ 768 | &iomutex, | ~~~~~~~~~ 769 | outQueue, | ~~~~~~~~~ 770 | std::ref(hctr), | ~~~~~~~~~~~~~~~ 771 | mopts); | ~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:872:31: required from 'bool mapReads(RapMapIndexT&, std::shared_ptr, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >]' 872 | spawnProcessReadsThreads(nthread, pairParserPtr.get(), rmi, iomutex, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 | outLog, hctrs, mopts); | ~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:1232:31: required from here 1232 | success = mapReads(rmi, consoleLog, &mopts); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup, spp::libc_allocator > >::value_type' {aka 'std::pair'} to 'spp::sparsegroup, spp::libc_allocator > >::mutable_reference' {aka 'std::pair&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const int; _U2 = int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = int; _T2 = int]' [-Wcast-user-defined] 1355 | *(mutable_pointer)p = std::move((mutable_reference)val); | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup::_init_val(mutable_value_type*, reference) [with T = std::pair; Alloc = spp::libc_allocator >; mutable_value_type = std::pair; reference = std::pair&]': /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1390:18: required from 'void spp::sparsegroup::_set_aux(allocator_type&, size_type, Val&, realloc_ok_type) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char; realloc_ok_type = spp::integral_constant]' 1390 | _init_val((mutable_pointer)(_group + offset), val); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1435:21: required from 'void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char]' 1435 | _set_aux(alloc, offset, val, check_alloc_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from 'spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; pointer = std::pair*; allocator_type = spp::libc_allocator >; size_type = unsigned char]' 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from 'spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]' 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair; Value = std::pair; Key = long int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]' 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/rapmap-0.15.0+dfsg/include/FrugalBooMap.hpp:162:30: required from 'FrugalBooMap::IteratorT FrugalBooMap::find(const KeyT&) [with KeyT = long unsigned int; ValueT = rapmap::utils::SAInterval; IteratorT = KVProxy<__gnu_cxx::__normal_iterator > >, rapmap::utils::SAInterval >]' 162 | l = overflow_[ind]; | ~~~~~~~~~^ /build/reproducible-path/rapmap-0.15.0+dfsg/include/SACollector.hpp:196:25: required from 'bool SACollector::operator()(std::string&, SASearcher&, rapmap::hit_manager::HitCollectorInfo >&) [with RapMapIndexT = RapMapSAIndex > >; std::string = std::__cxx11::basic_string; typename RapMapIndexT::IndexType = long int]' 196 | merIt = khash.find(mer.word(0));//get_bits(0, 2 * k)); | ~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:472:35: required from 'void processReadsPairSA(paired_parser*, RapMapIndexT&, MutexT*, std::shared_ptr, HitCounters&, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >; MutexT = std::mutex; paired_parser = fastx_parser::FastxParser; HitCounters = rapmap::utils::HitCounters]' 472 | bool lh = hitCollector(rpair.first.seq, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 473 | saSearcher, | ~~~~~~~~~~~ 474 | leftHCInfo); | ~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:765:37: required from 'bool spawnProcessReadsThreads(uint32_t, paired_parser*, RapMapIndexT&, MutexT&, std::shared_ptr, HitCounters&, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >; MutexT = std::mutex; uint32_t = unsigned int; paired_parser = fastx_parser::FastxParser; HitCounters = rapmap::utils::HitCounters]' 765 | threads.emplace_back(processReadsPairSA, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 | parser, | ~~~~~~~ 767 | std::ref(rmi), | ~~~~~~~~~~~~~~ 768 | &iomutex, | ~~~~~~~~~ 769 | outQueue, | ~~~~~~~~~ 770 | std::ref(hctr), | ~~~~~~~~~~~~~~~ 771 | mopts); | ~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:872:31: required from 'bool mapReads(RapMapIndexT&, std::shared_ptr, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >]' 872 | spawnProcessReadsThreads(nthread, pairParserPtr.get(), rmi, iomutex, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 | outLog, hctrs, mopts); | ~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:1217:29: required from here 1217 | success = mapReads(rmi, consoleLog, &mopts); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup, spp::libc_allocator > >::value_type' {aka 'std::pair'} to 'spp::sparsegroup, spp::libc_allocator > >::mutable_reference' {aka 'std::pair&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long int; _U2 = long int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = long int; _T2 = long int]' [-Wcast-user-defined] 1339 | ::new (p) value_type(std::move((mutable_reference)val)); | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup::_init_val(mutable_value_type*, reference) [with T = std::pair; Alloc = spp::libc_allocator >; mutable_value_type = std::pair; reference = std::pair&]': /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1390:18: required from 'void spp::sparsegroup::_set_aux(allocator_type&, size_type, Val&, realloc_ok_type) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char; realloc_ok_type = spp::integral_constant]' 1390 | _init_val((mutable_pointer)(_group + offset), val); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1435:21: required from 'void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char]' 1435 | _set_aux(alloc, offset, val, check_alloc_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from 'spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; pointer = std::pair*; allocator_type = spp::libc_allocator >; size_type = unsigned char]' 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from 'spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]' 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair; Value = std::pair; Key = int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]' 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/rapmap-0.15.0+dfsg/include/FrugalBooMap.hpp:162:30: required from 'FrugalBooMap::IteratorT FrugalBooMap::find(const KeyT&) [with KeyT = long unsigned int; ValueT = rapmap::utils::SAInterval; IteratorT = KVProxy<__gnu_cxx::__normal_iterator >, rapmap::utils::SAInterval >]' 162 | l = overflow_[ind]; | ~~~~~~~~~^ /build/reproducible-path/rapmap-0.15.0+dfsg/include/SACollector.hpp:196:25: required from 'bool SACollector::operator()(std::string&, SASearcher&, rapmap::hit_manager::HitCollectorInfo >&) [with RapMapIndexT = RapMapSAIndex > >; std::string = std::__cxx11::basic_string; typename RapMapIndexT::IndexType = int]' 196 | merIt = khash.find(mer.word(0));//get_bits(0, 2 * k)); | ~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:472:35: required from 'void processReadsPairSA(paired_parser*, RapMapIndexT&, MutexT*, std::shared_ptr, HitCounters&, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >; MutexT = std::mutex; paired_parser = fastx_parser::FastxParser; HitCounters = rapmap::utils::HitCounters]' 472 | bool lh = hitCollector(rpair.first.seq, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 473 | saSearcher, | ~~~~~~~~~~~ 474 | leftHCInfo); | ~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:765:37: required from 'bool spawnProcessReadsThreads(uint32_t, paired_parser*, RapMapIndexT&, MutexT&, std::shared_ptr, HitCounters&, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >; MutexT = std::mutex; uint32_t = unsigned int; paired_parser = fastx_parser::FastxParser; HitCounters = rapmap::utils::HitCounters]' 765 | threads.emplace_back(processReadsPairSA, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 | parser, | ~~~~~~~ 767 | std::ref(rmi), | ~~~~~~~~~~~~~~ 768 | &iomutex, | ~~~~~~~~~ 769 | outQueue, | ~~~~~~~~~ 770 | std::ref(hctr), | ~~~~~~~~~~~~~~~ 771 | mopts); | ~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:872:31: required from 'bool mapReads(RapMapIndexT&, std::shared_ptr, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >]' 872 | spawnProcessReadsThreads(nthread, pairParserPtr.get(), rmi, iomutex, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 | outLog, hctrs, mopts); | ~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:1232:31: required from here 1232 | success = mapReads(rmi, consoleLog, &mopts); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup, spp::libc_allocator > >::value_type' {aka 'std::pair'} to 'spp::sparsegroup, spp::libc_allocator > >::mutable_reference' {aka 'std::pair&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const int; _U2 = int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = int; _T2 = int]' [-Wcast-user-defined] 1339 | ::new (p) value_type(std::move((mutable_reference)val)); | ^~~~~~~~~~~~~~~~~~~~~~ cc1plus: note: unrecognized command-line option '-Wno-unused-local-typedef' may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option '-Wno-unused-local-typedef' may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option '-Wno-unused-local-typedef' may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option '-Wno-unused-local-typedef' may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option '-Wno-unused-local-typedef' may have been intended to silence earlier diagnostics In file included from /build/reproducible-path/rapmap-0.15.0+dfsg/include/digestpp/algorithm/sha2.hpp:9, from /build/reproducible-path/rapmap-0.15.0+dfsg/include/digestpp/digestpp.hpp:6, from /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:73: In member function 'void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = long unsigned int; long unsigned int O = 0]', inlined from 'digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::' at /build/reproducible-path/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from 'void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]' at /build/reproducible-path/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from 'void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = long unsigned int; long unsigned int O = 0]' at /build/reproducible-path/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from 'digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]' at /build/reproducible-path/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from 'void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]' at /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:581:30: /build/reproducible-path/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript 'const long unsigned int[0]' is partly outside array bounds of 'unsigned char [1]' [-Warray-bounds=] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/rapmap-0.15.0+dfsg/include/digestpp/digestpp.hpp:5: /build/reproducible-path/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function 'void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]': /build/reproducible-path/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: object 'byte' of size 1 169 | unsigned char byte = *begin++; | ^~~~ At global scope: cc1plus: note: unrecognized command-line option '-Wno-unused-local-typedef' may have been intended to silence earlier diagnostics At global scope: cc1plus: note: unrecognized command-line option '-Wno-unused-local-typedef' may have been intended to silence earlier diagnostics [100%] Linking CXX executable rapmap cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/rapmap.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -Wl,-z,relro -Wl,-z,now CMakeFiles/rapmap.dir/RapMap.cpp.o CMakeFiles/rapmap.dir/RapMapSAIndexer.cpp.o CMakeFiles/rapmap.dir/RapMapUtils.cpp.o CMakeFiles/rapmap.dir/RapMapSAMapper.cpp.o CMakeFiles/rapmap.dir/RapMapFileSystem.cpp.o CMakeFiles/rapmap.dir/RapMapSAIndex.cpp.o CMakeFiles/rapmap.dir/HitManager.cpp.o CMakeFiles/rapmap.dir/FastxParser.cpp.o CMakeFiles/rapmap.dir/rank9b.cpp.o CMakeFiles/rapmap.dir/stringpiece.cc.o CMakeFiles/rapmap.dir/xxhash.c.o CMakeFiles/rapmap.dir/bit_array.c.o CMakeFiles/rapmap.dir/edlib.cpp.o CMakeFiles/rapmap.dir/metro/metrohash64.cpp.o -o rapmap -L/build/reproducible-path/rapmap-0.15.0+dfsg/lib -L/build/reproducible-path/rapmap-0.15.0+dfsg/external/install/lib -Wl,-rpath,"\$ORIGIN/../lib:\$ORIGIN/../../lib:\$ORIGIN/:\$ORIGIN/../../external/install/lib" /usr/lib/aarch64-linux-gnu/libz.so -ldivsufsort -ldivsufsort64 -lm -lz /usr/lib/aarch64-linux-gnu/libjemalloc.so -lrt libksw2pp.a -ldl /usr/bin/ld: libksw2pp.a(KSW2Aligner.cpp.o): in function `ksw2pp::KSW2Aligner::operator()(unsigned char const*, int, unsigned char const*, int, ksw_extz_t*, ksw2pp::EnumToType<(ksw2pp::KSW2AlignmentType)2>)': ./obj-aarch64-linux-gnu/src/./src/ksw2pp/KSW2Aligner.cpp:362:(.text+0x4dc): undefined reference to `ksw_extz2_sse2' /usr/bin/ld: ./obj-aarch64-linux-gnu/src/./src/ksw2pp/KSW2Aligner.cpp:358:(.text+0x510): undefined reference to `ksw_extz2_sse41' /usr/bin/ld: libksw2pp.a(KSW2Aligner.cpp.o): in function `ksw2pp::KSW2Aligner::operator()(char const*, int, char const*, int, ksw_extz_t*, ksw2pp::EnumToType<(ksw2pp::KSW2AlignmentType)2>)': ./obj-aarch64-linux-gnu/src/./src/ksw2pp/KSW2Aligner.cpp:227:(.text+0x1088): undefined reference to `ksw_extz2_sse2' /usr/bin/ld: ./obj-aarch64-linux-gnu/src/./src/ksw2pp/KSW2Aligner.cpp:223:(.text+0x10cc): undefined reference to `ksw_extz2_sse41' collect2: error: ld returned 1 exit status make[4]: *** [src/CMakeFiles/rapmap.dir/build.make:311: src/rapmap] Error 1 make[4]: Leaving directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' make[3]: *** [CMakeFiles/Makefile2:134: src/CMakeFiles/rapmap.dir/all] Error 2 make[3]: Leaving directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' make[2]: *** [Makefile:169: all] Error 2 make[2]: Leaving directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' dh_auto_build: error: cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 returned exit code 2 make[1]: *** [debian/rules:23: override_dh_auto_build] Error 25 make[1]: Leaving directory '/build/reproducible-path/rapmap-0.15.0+dfsg' make: *** [debian/rules:17: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/84363 and its subdirectories Starting cleanup. All cleanup done. Fri Sep 27 15:08:40 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-VblJe3ZA, removing. /srv/reproducible-results/rbuild-debian/r-b-build.XX916EDH: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Sep 27 15:08 b1 drwxr-xr-x 2 jenkins jenkins 4096 Sep 27 15:07 b2 -rw-r--r-- 1 jenkins jenkins 2322 Mar 25 2024 rapmap_0.15.0+dfsg-4.dsc -rw------- 1 jenkins jenkins 3452 Sep 27 15:07 rbuildlog.hIHjh27 /srv/reproducible-results/rbuild-debian/r-b-build.XX916EDH/b1: total 220 -rw-r--r-- 1 jenkins jenkins 222400 Sep 27 15:08 build.log /srv/reproducible-results/rbuild-debian/r-b-build.XX916EDH/b2: total 0 Fri Sep 27 15:08:41 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Sep 27 03:07:19 -12 2024 I: pbuilder-time-stamp: 1727449639 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [rapmap_0.15.0+dfsg-4.dsc] I: copying [./rapmap_0.15.0+dfsg.orig.tar.xz] I: copying [./rapmap_0.15.0+dfsg-4.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Mar 25 17:52:53 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./rapmap_0.15.0+dfsg-4.dsc: no acceptable signature found dpkg-source: info: extracting rapmap in rapmap-0.15.0+dfsg dpkg-source: info: unpacking rapmap_0.15.0+dfsg.orig.tar.xz dpkg-source: info: unpacking rapmap_0.15.0+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use-debian-libs.patch dpkg-source: info: applying use_shared_libs.patch dpkg-source: info: applying avoid_privacy_breach.patch dpkg-source: info: applying spelling dpkg-source: info: applying portable_pause dpkg-source: info: applying no_gomp_needed dpkg-source: info: applying simde I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/84363/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='ab092a9c6da14e2a807add70916f156c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='84363' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.XX916EDH/pbuilderrc_cSFv --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.XX916EDH/b1 --logfile b1/build.log rapmap_0.15.0+dfsg-4.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/84363/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, zlib1g-dev, libdivsufsort-dev, libcereal-dev, libjellyfish-2.0-dev, libjemalloc-dev, libsimde-dev, libsparsehash-dev, libspdlog-dev, libtclap-dev, pkg-config, python3-markdown, python3 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19900 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libdivsufsort-dev; however: Package libdivsufsort-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libjellyfish-2.0-dev; however: Package libjellyfish-2.0-dev is not installed. pbuilder-satisfydepends-dummy depends on libjemalloc-dev; however: Package libjemalloc-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on libsparsehash-dev; however: Package libsparsehash-dev is not installed. pbuilder-satisfydepends-dummy depends on libspdlog-dev; however: Package libspdlog-dev is not installed. pbuilder-satisfydepends-dummy depends on libtclap-dev; however: Package libtclap-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on python3-markdown; however: Package python3-markdown is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} catch2{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcereal-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libdivsufsort-dev{a} libdivsufsort3{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfmt-dev{a} libfmt9{a} libgssapi-krb5-2{a} libicu72{a} libjellyfish-2.0-2{a} libjellyfish-2.0-dev{a} libjemalloc-dev{a} libjemalloc2{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnsl2{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libsparsehash-dev{a} libspdlog-dev{a} libspdlog1.12{a} libssh2-1t64{a} libtclap-dev{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-importlib-metadata{a} python3-markdown{a} python3-minimal{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} rapidjson-dev{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix python3-pygments python3-yaml wget 0 packages upgraded, 93 newly installed, 0 to remove and 0 not upgraded. Need to get 47.9 MB of archives. After unpacking 202 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.6-1 [806 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.3-1 [90.2 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.6-1 [1935 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.12.5-1+b1 [26.9 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1 [22.8 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-3 [9112 B] Get: 12 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3 [78.4 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libnsl2 arm64 1.3.0-3+b2 [37.7 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.6-1 [1898 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.6-1 [669 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.12.5-1+b1 [9872 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.12.5-1+b1 [27.9 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libproc2-0 arm64 2:4.0.4-5 [61.3 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 procps arm64 2:4.0.4-5 [868 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-8 [96.6 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 catch2 arm64 3.4.0-1 [551 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libarchive13t64 arm64 3.7.4-1 [323 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b4 [292 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3 [174 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.63.0-1 [71.2 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.0-7 [208 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.10.1-1 [322 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libjsoncpp25 arm64 1.9.5-6+b2 [73.2 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 librhash0 arm64 1.4.3-3+b1 [127 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libuv1t64 arm64 1.48.0-6 [142 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 cmake-data all 3.30.3-1 [2221 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 cmake arm64 3.30.3-1 [9398 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 64 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-2 [188 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 rapidjson-dev all 1.1.0+dfsg2-7.3 [98.0 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libcereal-dev arm64 1.3.2+dfsg-5 [221 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libdivsufsort3 arm64 2.0.1-6 [39.1 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libdivsufsort-dev arm64 2.0.1-6 [18.8 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libfmt9 arm64 9.1.0+ds1-2 [107 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libfmt-dev arm64 9.1.0+ds1-2 [171 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libjellyfish-2.0-2 arm64 2.3.1-3+b5 [62.1 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libjellyfish-2.0-dev arm64 2.3.1-3+b5 [136 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libjemalloc2 arm64 5.3.0-2+b1 [218 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libjemalloc-dev arm64 5.3.0-2+b1 [359 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-3 [35.3 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libsimde-dev all 0.8.2-1 [465 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libsparsehash-dev all 2.0.3-2 [76.8 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libspdlog1.12 arm64 1:1.12.0+ds-2+b1 [125 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libspdlog-dev arm64 1:1.12.0+ds-2+b1 [85.5 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libtclap-dev arm64 1.2.5-1+b1 [3359 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-3 [29.4 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-3 [26.0 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 pkg-config arm64 1.8.1-3 [13.9 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.20.2-1 [10.3 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 python3-importlib-metadata all 8.5.0-1 [21.0 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 python3-markdown all 3.7-1 [85.1 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB] Fetched 47.9 MB in 0s (154 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19900 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.6-1_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.6-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.6-1_arm64.deb ... Unpacking python3.12-minimal (3.12.6-1) ... Setting up libpython3.12-minimal:arm64 (3.12.6-1) ... Setting up libexpat1:arm64 (2.6.3-1) ... Setting up python3.12-minimal (3.12.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20220 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.5-1+b1_arm64.deb ... Unpacking python3-minimal (3.12.5-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../05-libcom-err2_1.47.1-1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../07-libkeyutils1_1.6.3-3_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../12-libnsl2_1.3.0-3+b2_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../14-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.6-1_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.6-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.6-1_arm64.deb ... Unpacking python3.12 (3.12.6-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../17-libpython3-stdlib_3.12.5-1+b1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.12.5-1+b1) ... Setting up python3-minimal (3.12.5-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21294 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.5-1+b1_arm64.deb ... Unpacking python3 (3.12.5-1+b1) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-5_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-5) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a4.0.4-5_arm64.deb ... Unpacking procps (2:4.0.4-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../05-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. 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Current default time zone: 'Etc/UTC' Local time is now: Fri Sep 27 15:07:44 UTC 2024. Universal Time is now: Fri Sep 27 15:07:44 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libjellyfish-2.0-2:arm64 (2.3.1-3+b5) ... Setting up libjemalloc-dev (5.3.0-2+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libpkgconf3:arm64 (1.8.1-3) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libproc2-0:arm64 (2:4.0.4-5) ... Setting up autopoint (0.22.5-2) ... Setting up libjsoncpp25:arm64 (1.9.5-6+b2) ... Setting up pkgconf-bin (1.8.1-3) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up libtclap-dev (1.2.5-1+b1) ... Setting up libfmt9:arm64 (9.1.0+ds1-2) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up librhash0:arm64 (1.4.3-3+b1) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up procps (2:4.0.4-5) ... Setting up netbase (6.4) ... Setting up cmake-data (3.30.3-1) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libssh2-1t64:arm64 (1.11.0-7) ... Setting up libdivsufsort3:arm64 (2.0.1-6) ... Setting up readline-common (8.2-5) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up libdivsufsort-dev:arm64 (2.0.1-6) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libspdlog1.12:arm64 (1:1.12.0+ds-2+b1) ... Setting up libjellyfish-2.0-dev (2.3.1-3+b5) ... Setting up libtool (2.4.7-7) ... Setting up libcereal-dev (1.3.2+dfsg-5) ... Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-3) ... Setting up pkgconf:arm64 (1.8.1-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libfmt-dev:arm64 (9.1.0+ds1-2) ... Setting up pkg-config:arm64 (1.8.1-3) ... Setting up libreadline8t64:arm64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libarchive13t64:arm64 (3.7.4-1) ... Setting up libcurl4t64:arm64 (8.10.1-1) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libspdlog-dev:arm64 (1:1.12.0+ds-2+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:arm64 (1.3.0-3+b2) ... Setting up cmake (3.30.3-1) ... Setting up libpython3.12-stdlib:arm64 (3.12.6-1) ... Setting up python3.12 (3.12.6-1) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:arm64 (3.12.5-1+b1) ... Setting up python3 (3.12.5-1+b1) ... Setting up python3-zipp (3.20.2-1) ... Setting up python3-markdown (3.7-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-importlib-metadata (8.5.0-1) ... Processing triggers for libc-bin (2.40-2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/rapmap-0.15.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../rapmap_0.15.0+dfsg-4_source.changes dpkg-buildpackage: info: source package rapmap dpkg-buildpackage: info: source version 0.15.0+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/rapmap-0.15.0+dfsg' dh_clean README.html sample_data/sample_quasi_index/ sample_data/sample_quasi_index_ph/ sample_data/sample_quasi_map.sam sample_data/sample_quasi_map_ph.sam make[1]: Leaving directory '/build/reproducible-path/rapmap-0.15.0+dfsg' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/rapmap-0.15.0+dfsg' dh_auto_configure -- -DJELLYFISH_ROOT=/usr -DNO_NATIVE_ARCH=true cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DJELLYFISH_ROOT=/usr -DNO_NATIVE_ARCH=true .. CC: gcc CC version: -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done version: 0.6.0 -- DISABLING NATIVE ARCH. -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE Making Default build type -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.3.1") -- Found Cereal: /usr/include (Required is at least version "1.2.2") -- Cereal found (include: /usr/include) -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Found Jemalloc: /usr/lib/aarch64-linux-gnu/libjemalloc.so (found version "5.3.0-0-g54eaed1d8b56b1aa528be3bdd1877e59c56fa90c") Found Jemalloc library --- using this memory allocator CPACK_SOURCE_IGNORE_FILES = .git/ CMAKE_SYSTEM_PROCESSOR: aarch64 -- Configuring done (3.0s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED JELLYFISH_ROOT -- Build files have been written to: /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/rapmap-0.15.0+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/rapmap-0.15.0+dfsg' dh_auto_build cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/rapmap-0.15.0+dfsg -B/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/ksw2pp_basic.dir/build.make src/CMakeFiles/ksw2pp_basic.dir/depend make -f src/CMakeFiles/ksw2pp_sse2.dir/build.make src/CMakeFiles/ksw2pp_sse2.dir/depend make[4]: Entering directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rapmap-0.15.0+dfsg /build/reproducible-path/rapmap-0.15.0+dfsg/src /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/ksw2pp_basic.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rapmap-0.15.0+dfsg /build/reproducible-path/rapmap-0.15.0+dfsg/src /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/ksw2pp_sse2.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/ksw2pp_basic.dir/build.make src/CMakeFiles/ksw2pp_basic.dir/build make[4]: Leaving directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/ksw2pp_sse2.dir/build.make src/CMakeFiles/ksw2pp_sse2.dir/build make[4]: Entering directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' [ 3%] Building C object src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o [ 7%] Building C object src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o [ 11%] Building C object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o [ 15%] Building C object src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extz2_sse.c.o [ 19%] Building C object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extz.c.o cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/digestpp -I/build/reproducible-path/rapmap-0.15.0+dfsg/external -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/cereal/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/install/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o -MF CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o.d -o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_extf2_sse.c cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/digestpp -I/build/reproducible-path/rapmap-0.15.0+dfsg/external -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/cereal/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/install/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o -MF CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o.d -o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_extd2_sse.c cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_extd.c cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extz.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extz.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extz.c.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_extz.c [ 23%] Building C object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg.c.o cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/digestpp -I/build/reproducible-path/rapmap-0.15.0+dfsg/external -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/cereal/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/install/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extz2_sse.c.o -MF CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extz2_sse.c.o.d -o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extz2_sse.c.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_extz2_sse.c [ 26%] Building C object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/kalloc.c.o [ 30%] Building C object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2.c.o cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg.c.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_gg.c [ 34%] Building C object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o [ 38%] Building CXX object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2.c.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_gg2.c cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/kalloc.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/kalloc.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/kalloc.c.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/ksw2pp/kalloc.c cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_gg2_sse.c cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -g -O2 -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/ksw2pp/KSW2Aligner.cpp make[4]: Leaving directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' [ 38%] Built target ksw2pp_basic make[4]: Leaving directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' [ 38%] Built target ksw2pp_sse2 make -f src/CMakeFiles/ksw2pp.dir/build.make src/CMakeFiles/ksw2pp.dir/depend make[4]: Entering directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rapmap-0.15.0+dfsg /build/reproducible-path/rapmap-0.15.0+dfsg/src /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/ksw2pp.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/ksw2pp.dir/build.make src/CMakeFiles/ksw2pp.dir/build make[4]: Entering directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' [ 42%] Linking CXX static library libksw2pp.a cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/ksw2pp.dir/cmake_clean_target.cmake cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ksw2pp.dir/link.txt --verbose=1 /usr/bin/ar qc libksw2pp.a CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extz2_sse.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/kalloc.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extz.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o /usr/bin/ranlib libksw2pp.a make[4]: Leaving directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' [ 42%] Built target ksw2pp make -f src/CMakeFiles/rapmap.dir/build.make src/CMakeFiles/rapmap.dir/depend make[4]: Entering directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/rapmap-0.15.0+dfsg /build/reproducible-path/rapmap-0.15.0+dfsg/src /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src/CMakeFiles/rapmap.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' make -f src/CMakeFiles/rapmap.dir/build.make src/CMakeFiles/rapmap.dir/build make[4]: Entering directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' [ 46%] Building CXX object src/CMakeFiles/rapmap.dir/RapMapSAIndexer.cpp.o [ 50%] Building CXX object src/CMakeFiles/rapmap.dir/RapMapUtils.cpp.o [ 53%] Building CXX object src/CMakeFiles/rapmap.dir/RapMap.cpp.o [ 61%] Building CXX object src/CMakeFiles/rapmap.dir/RapMapFileSystem.cpp.o [ 61%] Building CXX object src/CMakeFiles/rapmap.dir/RapMapSAMapper.cpp.o [ 65%] Building CXX object src/CMakeFiles/rapmap.dir/RapMapSAIndex.cpp.o [ 69%] Building CXX object src/CMakeFiles/rapmap.dir/FastxParser.cpp.o cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/digestpp -I/build/reproducible-path/rapmap-0.15.0+dfsg/external -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/cereal/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/RapMap.cpp.o -MF CMakeFiles/rapmap.dir/RapMap.cpp.o.d -o CMakeFiles/rapmap.dir/RapMap.cpp.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMap.cpp cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/digestpp -I/build/reproducible-path/rapmap-0.15.0+dfsg/external -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/cereal/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/RapMapSAIndexer.cpp.o -MF CMakeFiles/rapmap.dir/RapMapSAIndexer.cpp.o.d -o CMakeFiles/rapmap.dir/RapMapSAIndexer.cpp.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/digestpp -I/build/reproducible-path/rapmap-0.15.0+dfsg/external -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/cereal/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/RapMapUtils.cpp.o -MF CMakeFiles/rapmap.dir/RapMapUtils.cpp.o.d -o CMakeFiles/rapmap.dir/RapMapUtils.cpp.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapUtils.cpp cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/digestpp -I/build/reproducible-path/rapmap-0.15.0+dfsg/external -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/cereal/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/RapMapSAMapper.cpp.o -MF CMakeFiles/rapmap.dir/RapMapSAMapper.cpp.o.d -o CMakeFiles/rapmap.dir/RapMapSAMapper.cpp.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp [ 76%] Building CXX object src/CMakeFiles/rapmap.dir/stringpiece.cc.o [ 73%] Building CXX object src/CMakeFiles/rapmap.dir/HitManager.cpp.o [ 80%] Building CXX object src/CMakeFiles/rapmap.dir/rank9b.cpp.o cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/digestpp -I/build/reproducible-path/rapmap-0.15.0+dfsg/external -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/cereal/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/RapMapFileSystem.cpp.o -MF CMakeFiles/rapmap.dir/RapMapFileSystem.cpp.o.d -o CMakeFiles/rapmap.dir/RapMapFileSystem.cpp.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapFileSystem.cpp cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/digestpp -I/build/reproducible-path/rapmap-0.15.0+dfsg/external -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/cereal/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/RapMapSAIndex.cpp.o -MF CMakeFiles/rapmap.dir/RapMapSAIndex.cpp.o.d -o CMakeFiles/rapmap.dir/RapMapSAIndex.cpp.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndex.cpp cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/digestpp -I/build/reproducible-path/rapmap-0.15.0+dfsg/external -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/cereal/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/HitManager.cpp.o -MF CMakeFiles/rapmap.dir/HitManager.cpp.o.d -o CMakeFiles/rapmap.dir/HitManager.cpp.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/HitManager.cpp cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/digestpp -I/build/reproducible-path/rapmap-0.15.0+dfsg/external -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/cereal/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/FastxParser.cpp.o -MF CMakeFiles/rapmap.dir/FastxParser.cpp.o.d -o CMakeFiles/rapmap.dir/FastxParser.cpp.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/FastxParser.cpp cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/digestpp -I/build/reproducible-path/rapmap-0.15.0+dfsg/external -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/cereal/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/rank9b.cpp.o -MF CMakeFiles/rapmap.dir/rank9b.cpp.o.d -o CMakeFiles/rapmap.dir/rank9b.cpp.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/rank9b.cpp cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/digestpp -I/build/reproducible-path/rapmap-0.15.0+dfsg/external -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/cereal/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/stringpiece.cc.o -MF CMakeFiles/rapmap.dir/stringpiece.cc.o.d -o CMakeFiles/rapmap.dir/stringpiece.cc.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/stringpiece.cc [ 84%] Building C object src/CMakeFiles/rapmap.dir/xxhash.c.o cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/digestpp -I/build/reproducible-path/rapmap-0.15.0+dfsg/external -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/cereal/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/install/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/rapmap.dir/xxhash.c.o -MF CMakeFiles/rapmap.dir/xxhash.c.o.d -o CMakeFiles/rapmap.dir/xxhash.c.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/xxhash.c [ 88%] Building C object src/CMakeFiles/rapmap.dir/bit_array.c.o cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cc -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/digestpp -I/build/reproducible-path/rapmap-0.15.0+dfsg/external -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/cereal/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/install/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/rapmap.dir/bit_array.c.o -MF CMakeFiles/rapmap.dir/bit_array.c.o.d -o CMakeFiles/rapmap.dir/bit_array.c.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/bit_array.c [ 92%] Building CXX object src/CMakeFiles/rapmap.dir/edlib.cpp.o cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/digestpp -I/build/reproducible-path/rapmap-0.15.0+dfsg/external -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/cereal/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/edlib.cpp.o -MF CMakeFiles/rapmap.dir/edlib.cpp.o.d -o CMakeFiles/rapmap.dir/edlib.cpp.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/edlib.cpp [ 96%] Building CXX object src/CMakeFiles/rapmap.dir/metro/metrohash64.cpp.o cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/rapmap-0.15.0+dfsg/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/digestpp -I/build/reproducible-path/rapmap-0.15.0+dfsg/external -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/cereal/include -I/build/reproducible-path/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/metro/metrohash64.cpp.o -MF CMakeFiles/rapmap.dir/metro/metrohash64.cpp.o.d -o CMakeFiles/rapmap.dir/metro/metrohash64.cpp.o -c /build/reproducible-path/rapmap-0.15.0+dfsg/src/metro/metrohash64.cpp In file included from /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/spdlog_impl.h:12, from /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/spdlog.h:192, from /build/reproducible-path/rapmap-0.15.0+dfsg/include/RapMapUtils.hpp:33, from /build/reproducible-path/rapmap-0.15.0+dfsg/include/HitManager.hpp:25, from /build/reproducible-path/rapmap-0.15.0+dfsg/src/HitManager.cpp:22: /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 197 | registry_t() {} | ^ /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >' /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 198 | registry_t(const registry_t&) = delete; | ^ /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >' In file included from /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/spdlog_impl.h:12, from /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/spdlog.h:192, from /build/reproducible-path/rapmap-0.15.0+dfsg/include/RapMapUtils.hpp:33, from /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapUtils.cpp:26: /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 197 | registry_t() {} | ^ /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >' /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 198 | registry_t(const registry_t&) = delete; | ^ /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >' In file included from /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/spdlog_impl.h:12, from /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/spdlog.h:192, from /build/reproducible-path/rapmap-0.15.0+dfsg/include/RapMapUtils.hpp:33, from /build/reproducible-path/rapmap-0.15.0+dfsg/include/FrugalBooMap.hpp:5, from /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndex.cpp:23: /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 197 | registry_t() {} | ^ /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >' /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 198 | registry_t(const registry_t&) = delete; | ^ /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >' In file included from /build/reproducible-path/rapmap-0.15.0+dfsg/include/FastxParser.hpp:17, from /build/reproducible-path/rapmap-0.15.0+dfsg/src/FastxParser.cpp:1: /build/reproducible-path/rapmap-0.15.0+dfsg/include/concurrentqueue.h: In instantiation of 'void moodycamel::details::swap_relaxed(std::atomic<_ITp>&, std::atomic<_ITp>&) [with T = std::thread::id]': /build/reproducible-path/rapmap-0.15.0+dfsg/include/concurrentqueue.h:3228:26: required from 'void moodycamel::ConcurrentQueue::ImplicitProducerKVP::swap(moodycamel::ConcurrentQueue::ImplicitProducerKVP&) [with T = std::unique_ptr, std::default_delete > >; Traits = moodycamel::ConcurrentQueueDefaultTraits]' 3228 | details::swap_relaxed(key, other.key); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/concurrentqueue.h:3221:4: required from 'moodycamel::ConcurrentQueue::ImplicitProducerKVP& moodycamel::ConcurrentQueue::ImplicitProducerKVP::operator=(moodycamel::ConcurrentQueue::ImplicitProducerKVP&&) [with T = std::unique_ptr, std::default_delete > >; Traits = moodycamel::ConcurrentQueueDefaultTraits]' 3221 | swap(other); | ^~~~ /usr/include/c++/14/bits/move.h:222:11: required from 'std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = moodycamel::ConcurrentQueue, default_delete > >, moodycamel::ConcurrentQueueDefaultTraits>::ImplicitProducerKVP; _Require<__not_<__is_tuple_like<_Tp> >, is_move_constructible<_Tp>, is_move_assignable<_Tp> > = void]' 222 | __a = _GLIBCXX_MOVE(__b); | ^ /usr/include/c++/14/bits/stl_algobase.h:185:11: required from 'void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = moodycamel::ConcurrentQueue, default_delete > >, moodycamel::ConcurrentQueueDefaultTraits>::ImplicitProducerKVP*; _ForwardIterator2 = moodycamel::ConcurrentQueue, default_delete > >, moodycamel::ConcurrentQueueDefaultTraits>::ImplicitProducerKVP*]' 185 | swap(*__a, *__b); | ~~~~^~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algobase.h:215:16: required from '_ForwardIterator2 std::swap_ranges(_ForwardIterator1, _ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = moodycamel::ConcurrentQueue, default_delete > >, moodycamel::ConcurrentQueueDefaultTraits>::ImplicitProducerKVP*; _ForwardIterator2 = moodycamel::ConcurrentQueue, default_delete > >, moodycamel::ConcurrentQueueDefaultTraits>::ImplicitProducerKVP*]' 215 | std::iter_swap(__first1, __first2); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/array:127:25: required from 'void std::array<_Tp, _Nm>::swap(std::array<_Tp, _Nm>&) [with _Tp = moodycamel::ConcurrentQueue, std::default_delete > >, moodycamel::ConcurrentQueueDefaultTraits>::ImplicitProducerKVP; long unsigned int _Nm = 32]' 127 | { std::swap_ranges(begin(), end(), __other.begin()); } | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/concurrentqueue.h:3264:42: required from 'void moodycamel::ConcurrentQueue::swap_implicit_producer_hashes(moodycamel::ConcurrentQueue&) [with T = std::unique_ptr, std::default_delete > >; Traits = moodycamel::ConcurrentQueueDefaultTraits]' 3264 | initialImplicitProducerHashEntries.swap(other.initialImplicitProducerHashEntries); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/concurrentqueue.h:892:3: required from 'moodycamel::ConcurrentQueue& moodycamel::ConcurrentQueue::swap_internal(moodycamel::ConcurrentQueue&) [with T = std::unique_ptr, std::default_delete > >; Traits = moodycamel::ConcurrentQueueDefaultTraits]' 892 | swap_implicit_producer_hashes(other); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/concurrentqueue.h:863:10: required from 'moodycamel::ConcurrentQueue& moodycamel::ConcurrentQueue::operator=(moodycamel::ConcurrentQueue&&) [with T = std::unique_ptr, std::default_delete > >; Traits = moodycamel::ConcurrentQueueDefaultTraits]' 863 | return swap_internal(other); | ^~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/FastxParser.cpp:46:14: required from 'fastx_parser::FastxParser::FastxParser(std::vector >, std::vector >, uint32_t, uint32_t, uint32_t) [with T = fastx_parser::ReadSeq; uint32_t = unsigned int]' 46 | readQueue_ = moodycamel::ConcurrentQueue>>( | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 | 4 * numConsumers, numParsers, 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/FastxParser.cpp:405:16: required from here 405 | template class FastxParser; | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/concurrentqueue.h:446:19: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 446 | T temp = std::move(left.load(std::memory_order_relaxed)); | ^~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/concurrentqueue.h:446:19: note: remove 'std::move' call /build/reproducible-path/rapmap-0.15.0+dfsg/include/concurrentqueue.h:447:27: warning: moving a temporary object prevents copy elision [-Wpessimizing-move] 447 | left.store(std::move(right.load(std::memory_order_relaxed)), std::memory_order_relaxed); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/concurrentqueue.h:447:27: note: remove 'std::move' call In file included from /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/spdlog_impl.h:12, from /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/spdlog.h:192, from /build/reproducible-path/rapmap-0.15.0+dfsg/include/IndexHeader.hpp:25, from /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMap.cpp:30: /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 197 | registry_t() {} | ^ /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >' /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 198 | registry_t(const registry_t&) = delete; | ^ /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >' In file included from /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/spdlog_impl.h:12, from /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/spdlog.h:192, from /build/reproducible-path/rapmap-0.15.0+dfsg/include/RapMapUtils.hpp:33, from /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:50: /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 197 | registry_t() {} | ^ /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >' /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 198 | registry_t(const registry_t&) = delete; | ^ /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >' In file included from /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/spdlog_impl.h:12, from /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/spdlog.h:192, from /build/reproducible-path/rapmap-0.15.0+dfsg/include/RapMapUtils.hpp:33, from /build/reproducible-path/rapmap-0.15.0+dfsg/include/HitManager.hpp:25, from /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:50: /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 197 | registry_t() {} | ^ /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >' /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 198 | registry_t(const registry_t&) = delete; | ^ /build/reproducible-path/rapmap-0.15.0+dfsg/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >' In file included from /build/reproducible-path/rapmap-0.15.0+dfsg/include/zstr/zstr.hpp:16, from /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:62: /build/reproducible-path/rapmap-0.15.0+dfsg/include/zstr/strict_fstream.hpp: In static member function 'static void strict_fstream::detail::static_method_holder::check_peek(std::istream*, const std::string&, std::ios_base::openmode)': /build/reproducible-path/rapmap-0.15.0+dfsg/include/zstr/strict_fstream.hpp:128:39: warning: catching polymorphic type 'class std::ios_base::failure' by value [-Wcatch-value=] 128 | catch (std::ios_base::failure e) {} | ^ In file included from /build/reproducible-path/rapmap-0.15.0+dfsg/include/RapMapUtils.hpp:29: /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup::_set_val(value_type*, reference) [with T = std::pair > >; Alloc = spp::libc_allocator > > >; value_type = std::pair > >; reference = std::pair > >&]': /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1440:21: required from 'void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair > >; T = std::pair > >; Alloc = spp::libc_allocator > > >; allocator_type = spp::libc_allocator > > >; size_type = unsigned char]' 1440 | _set_val(&_group[offset], val); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from 'spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair > >; T = std::pair > >; Alloc = spp::libc_allocator > > >; pointer = std::pair > >*; allocator_type = spp::libc_allocator > > >; size_type = unsigned char]' 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from 'spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair > >; T = std::pair > >; Alloc = spp::libc_allocator > > >; reference = std::pair > >&; size_type = long unsigned int]' 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair > >; Value = std::pair > >; Key = long unsigned int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map > >::SelectKey; SetKey = spp::sparse_hash_map > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > > >; reference = std::pair > >&; size_type = long unsigned int]' 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map > >::DefaultValue; KT = long unsigned int&; Value = std::pair > >; Key = long unsigned int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map > >::SelectKey; SetKey = spp::sparse_hash_map > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > > >; value_type = std::pair > >]' 3288 | return _insert_at(def, erased ? erased_pos : bucknum, erased); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3810:57: required from 'spp::sparse_hash_map::mapped_type& spp::sparse_hash_map::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = std::vector >; HashFcn = spp::spp_hash; EqualKey = std::equal_to; Alloc = spp::libc_allocator > > >; mapped_type = std::vector >]' 3810 | return rep.template find_or_insert(std::forward(key)).second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:652:33: required from 'void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]' 652 | duplicateNames[dupInfo.txId].push_back(processedName); | ~~~~~~~~~~~~~~^ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:1032:21: required from here 1032 | indexTranscriptsSA(transcriptParserPtr.get(), indexDir, decoyNames, noClipPolyA, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 | usePerfectHash, numPerfectHashThreads, keepDuplicates, sepStr, iomutex, jointLog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup > >, spp::libc_allocator > > > >::value_type' {aka 'std::pair > >'} to 'spp::sparsegroup > >, spp::libc_allocator > > > >::mutable_reference' {aka 'std::pair > >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = std::vector >; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = long unsigned int; _T2 = std::vector >]' [-Wcast-user-defined] 1355 | *(mutable_pointer)p = std::move((mutable_reference)val); | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup::_init_val(mutable_value_type*, reference) [with T = std::pair > >; Alloc = spp::libc_allocator > > >; mutable_value_type = std::pair > >; reference = std::pair > >&]': /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1407:22: required from 'void spp::sparsegroup::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair > >; T = std::pair > >; Alloc = spp::libc_allocator > > >; allocator_type = spp::libc_allocator > > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant]' 1407 | _init_val((mutable_pointer)&_group[num_items], val); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1435:21: required from 'void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair > >; T = std::pair > >; Alloc = spp::libc_allocator > > >; allocator_type = spp::libc_allocator > > >; size_type = unsigned char]' 1435 | _set_aux(alloc, offset, val, check_alloc_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from 'spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair > >; T = std::pair > >; Alloc = spp::libc_allocator > > >; pointer = std::pair > >*; allocator_type = spp::libc_allocator > > >; size_type = unsigned char]' 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from 'spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair > >; T = std::pair > >; Alloc = spp::libc_allocator > > >; reference = std::pair > >&; size_type = long unsigned int]' 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair > >; Value = std::pair > >; Key = long unsigned int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map > >::SelectKey; SetKey = spp::sparse_hash_map > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > > >; reference = std::pair > >&; size_type = long unsigned int]' 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map > >::DefaultValue; KT = long unsigned int&; Value = std::pair > >; Key = long unsigned int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map > >::SelectKey; SetKey = spp::sparse_hash_map > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > > >; value_type = std::pair > >]' 3288 | return _insert_at(def, erased ? erased_pos : bucknum, erased); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3810:57: required from 'spp::sparse_hash_map::mapped_type& spp::sparse_hash_map::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = std::vector >; HashFcn = spp::spp_hash; EqualKey = std::equal_to; Alloc = spp::libc_allocator > > >; mapped_type = std::vector >]' 3810 | return rep.template find_or_insert(std::forward(key)).second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:652:33: required from 'void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]' 652 | duplicateNames[dupInfo.txId].push_back(processedName); | ~~~~~~~~~~~~~~^ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:1032:21: required from here 1032 | indexTranscriptsSA(transcriptParserPtr.get(), indexDir, decoyNames, noClipPolyA, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 | usePerfectHash, numPerfectHashThreads, keepDuplicates, sepStr, iomutex, jointLog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup > >, spp::libc_allocator > > > >::value_type' {aka 'std::pair > >'} to 'spp::sparsegroup > >, spp::libc_allocator > > > >::mutable_reference' {aka 'std::pair > >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = std::vector >; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = long unsigned int; _T2 = std::vector >]' [-Wcast-user-defined] 1339 | ::new (p) value_type(std::move((mutable_reference)val)); | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup::_set_val(value_type*, reference) [with T = std::pair >; Alloc = spp::libc_allocator > >; value_type = std::pair >; reference = std::pair >&]': /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1440:21: required from 'void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; allocator_type = spp::libc_allocator > >; size_type = unsigned char]' 1440 | _set_val(&_group[offset], val); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from 'spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; pointer = std::pair >*; allocator_type = spp::libc_allocator > >; size_type = unsigned char]' 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from 'spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; reference = std::pair >&; size_type = long unsigned int]' 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair >; Value = std::pair >; Key = long unsigned int; HashFcn = rapmap::utils::KmerKeyHasher; ExtractKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SelectKey; SetKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; reference = std::pair >&; size_type = long unsigned int]' 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::DefaultValue; KT = long unsigned int&; Value = std::pair >; Key = long unsigned int; HashFcn = rapmap::utils::KmerKeyHasher; ExtractKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SelectKey; SetKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; value_type = std::pair >]' 3288 | return _insert_at(def, erased ? erased_pos : bucknum, erased); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3810:57: required from 'spp::sparse_hash_map::mapped_type& spp::sparse_hash_map::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = rapmap::utils::SAInterval; HashFcn = rapmap::utils::KmerKeyHasher; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; mapped_type = rapmap::utils::SAInterval]' 3810 | return rep.template find_or_insert(std::forward(key)).second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:319:18: required from 'bool buildHash(const std::string&, nonstd::sv_lite::string_view, size_t, uint32_t, std::vector<_RealType>&) [with IndexT = long int; std::string = std::__cxx11::basic_string; nonstd::sv_lite::string_view = nonstd::sv_lite::basic_string_view; size_t = long unsigned int; uint32_t = unsigned int]' 319 | khash[bits] = {start, stop}; | ~~~~~^ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:842:34: required from 'void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]' 842 | success = buildHash(outputDir, concatText, tlen, k, SA); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:1032:21: required from here 1032 | indexTranscriptsSA(transcriptParserPtr.get(), indexDir, decoyNames, noClipPolyA, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 | usePerfectHash, numPerfectHashThreads, keepDuplicates, sepStr, iomutex, jointLog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup >, spp::libc_allocator > > >::value_type' {aka 'std::pair >'} to 'spp::sparsegroup >, spp::libc_allocator > > >::mutable_reference' {aka 'std::pair >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = rapmap::utils::SAInterval; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = long unsigned int; _T2 = rapmap::utils::SAInterval]' [-Wcast-user-defined] 1355 | *(mutable_pointer)p = std::move((mutable_reference)val); | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup::_set_val(value_type*, reference) [with T = std::pair >; Alloc = spp::libc_allocator > >; value_type = std::pair >; reference = std::pair >&]': /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1440:21: required from 'void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; allocator_type = spp::libc_allocator > >; size_type = unsigned char]' 1440 | _set_val(&_group[offset], val); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from 'spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; pointer = std::pair >*; allocator_type = spp::libc_allocator > >; size_type = unsigned char]' 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from 'spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; reference = std::pair >&; size_type = long unsigned int]' 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair >; Value = std::pair >; Key = long unsigned int; HashFcn = rapmap::utils::KmerKeyHasher; ExtractKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SelectKey; SetKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; reference = std::pair >&; size_type = long unsigned int]' 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::DefaultValue; KT = long unsigned int&; Value = std::pair >; Key = long unsigned int; HashFcn = rapmap::utils::KmerKeyHasher; ExtractKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SelectKey; SetKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; value_type = std::pair >]' 3288 | return _insert_at(def, erased ? erased_pos : bucknum, erased); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3810:57: required from 'spp::sparse_hash_map::mapped_type& spp::sparse_hash_map::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = rapmap::utils::SAInterval; HashFcn = rapmap::utils::KmerKeyHasher; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; mapped_type = rapmap::utils::SAInterval]' 3810 | return rep.template find_or_insert(std::forward(key)).second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:319:18: required from 'bool buildHash(const std::string&, nonstd::sv_lite::string_view, size_t, uint32_t, std::vector<_RealType>&) [with IndexT = int; std::string = std::__cxx11::basic_string; nonstd::sv_lite::string_view = nonstd::sv_lite::basic_string_view; size_t = long unsigned int; uint32_t = unsigned int]' 319 | khash[bits] = {start, stop}; | ~~~~~^ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:863:34: required from 'void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]' 863 | success = buildHash(outputDir, concatText, tlen, k, SA); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:1032:21: required from here 1032 | indexTranscriptsSA(transcriptParserPtr.get(), indexDir, decoyNames, noClipPolyA, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 | usePerfectHash, numPerfectHashThreads, keepDuplicates, sepStr, iomutex, jointLog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup >, spp::libc_allocator > > >::value_type' {aka 'std::pair >'} to 'spp::sparsegroup >, spp::libc_allocator > > >::mutable_reference' {aka 'std::pair >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = rapmap::utils::SAInterval; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = long unsigned int; _T2 = rapmap::utils::SAInterval]' [-Wcast-user-defined] 1355 | *(mutable_pointer)p = std::move((mutable_reference)val); | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup::_set_val(value_type*, reference) [with T = std::pair; Alloc = spp::libc_allocator >; value_type = std::pair; reference = std::pair&]': /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1440:21: required from 'void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char]' 1440 | _set_val(&_group[offset], val); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from 'spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; pointer = std::pair*; allocator_type = spp::libc_allocator >; size_type = unsigned char]' 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from 'spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]' 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair; Value = std::pair; Key = long int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]' 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::DefaultValue; KT = long int; Value = std::pair; Key = long int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; value_type = std::pair]' 3288 | return _insert_at(def, erased ? erased_pos : bucknum, erased); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3810:57: required from 'spp::sparse_hash_map::mapped_type& spp::sparse_hash_map::operator[](KT&&) [with KT = long int; Key = long int; T = long int; HashFcn = spp::spp_hash; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; mapped_type = long int]' 3810 | return rep.template find_or_insert(std::forward(key)).second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/FrugalBooMap.hpp:106:22: required from 'void FrugalBooMap::add(KeyT&&, ValueT&&) [with KeyT = long unsigned int; ValueT = rapmap::utils::SAInterval]' 106 | overflow_[v.begin()] = l; | ~~~~~~~~~^ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:162:24: required from 'bool buildPerfectHash(const std::string&, nonstd::sv_lite::string_view, size_t, uint32_t, std::vector<_RealType>&, uint32_t) [with IndexT = long int; std::string = std::__cxx11::basic_string; nonstd::sv_lite::string_view = nonstd::sv_lite::basic_string_view; size_t = long unsigned int; uint32_t = unsigned int]' 162 | intervals.add(std::move(bits), {start, stop}); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:839:41: required from 'void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]' 839 | success = buildPerfectHash(outputDir, concatText, tlen, k, SA, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 | numHashThreads); | ~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:1032:21: required from here 1032 | indexTranscriptsSA(transcriptParserPtr.get(), indexDir, decoyNames, noClipPolyA, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 | usePerfectHash, numPerfectHashThreads, keepDuplicates, sepStr, iomutex, jointLog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup, spp::libc_allocator > >::value_type' {aka 'std::pair'} to 'spp::sparsegroup, spp::libc_allocator > >::mutable_reference' {aka 'std::pair&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long int; _U2 = long int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = long int; _T2 = long int]' [-Wcast-user-defined] 1355 | *(mutable_pointer)p = std::move((mutable_reference)val); | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup::_init_val(mutable_value_type*, reference) [with T = std::pair >; Alloc = spp::libc_allocator > >; mutable_value_type = std::pair >; reference = std::pair >&]': /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1407:22: required from 'void spp::sparsegroup::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; allocator_type = spp::libc_allocator > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant]' 1407 | _init_val((mutable_pointer)&_group[num_items], val); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1435:21: required from 'void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; allocator_type = spp::libc_allocator > >; size_type = unsigned char]' 1435 | _set_aux(alloc, offset, val, check_alloc_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from 'spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; pointer = std::pair >*; allocator_type = spp::libc_allocator > >; size_type = unsigned char]' 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from 'spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; reference = std::pair >&; size_type = long unsigned int]' 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair >; Value = std::pair >; Key = long unsigned int; HashFcn = rapmap::utils::KmerKeyHasher; ExtractKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SelectKey; SetKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; reference = std::pair >&; size_type = long unsigned int]' 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::DefaultValue; KT = long unsigned int&; Value = std::pair >; Key = long unsigned int; HashFcn = rapmap::utils::KmerKeyHasher; ExtractKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SelectKey; SetKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; value_type = std::pair >]' 3288 | return _insert_at(def, erased ? erased_pos : bucknum, erased); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3810:57: required from 'spp::sparse_hash_map::mapped_type& spp::sparse_hash_map::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = rapmap::utils::SAInterval; HashFcn = rapmap::utils::KmerKeyHasher; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; mapped_type = rapmap::utils::SAInterval]' 3810 | return rep.template find_or_insert(std::forward(key)).second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:319:18: required from 'bool buildHash(const std::string&, nonstd::sv_lite::string_view, size_t, uint32_t, std::vector<_RealType>&) [with IndexT = long int; std::string = std::__cxx11::basic_string; nonstd::sv_lite::string_view = nonstd::sv_lite::basic_string_view; size_t = long unsigned int; uint32_t = unsigned int]' 319 | khash[bits] = {start, stop}; | ~~~~~^ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:842:34: required from 'void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]' 842 | success = buildHash(outputDir, concatText, tlen, k, SA); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:1032:21: required from here 1032 | indexTranscriptsSA(transcriptParserPtr.get(), indexDir, decoyNames, noClipPolyA, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 | usePerfectHash, numPerfectHashThreads, keepDuplicates, sepStr, iomutex, jointLog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup >, spp::libc_allocator > > >::value_type' {aka 'std::pair >'} to 'spp::sparsegroup >, spp::libc_allocator > > >::mutable_reference' {aka 'std::pair >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = rapmap::utils::SAInterval; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = long unsigned int; _T2 = rapmap::utils::SAInterval]' [-Wcast-user-defined] 1339 | ::new (p) value_type(std::move((mutable_reference)val)); | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup::_set_val(value_type*, reference) [with T = std::pair; Alloc = spp::libc_allocator >; value_type = std::pair; reference = std::pair&]': /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1440:21: required from 'void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char]' 1440 | _set_val(&_group[offset], val); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from 'spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; pointer = std::pair*; allocator_type = spp::libc_allocator >; size_type = unsigned char]' 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from 'spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]' 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair; Value = std::pair; Key = int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]' 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::DefaultValue; KT = int; Value = std::pair; Key = int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; value_type = std::pair]' 3288 | return _insert_at(def, erased ? erased_pos : bucknum, erased); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3810:57: required from 'spp::sparse_hash_map::mapped_type& spp::sparse_hash_map::operator[](KT&&) [with KT = int; Key = int; T = int; HashFcn = spp::spp_hash; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; mapped_type = int]' 3810 | return rep.template find_or_insert(std::forward(key)).second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/FrugalBooMap.hpp:106:22: required from 'void FrugalBooMap::add(KeyT&&, ValueT&&) [with KeyT = long unsigned int; ValueT = rapmap::utils::SAInterval]' 106 | overflow_[v.begin()] = l; | ~~~~~~~~~^ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:162:24: required from 'bool buildPerfectHash(const std::string&, nonstd::sv_lite::string_view, size_t, uint32_t, std::vector<_RealType>&, uint32_t) [with IndexT = int; std::string = std::__cxx11::basic_string; nonstd::sv_lite::string_view = nonstd::sv_lite::basic_string_view; size_t = long unsigned int; uint32_t = unsigned int]' 162 | intervals.add(std::move(bits), {start, stop}); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:860:41: required from 'void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]' 860 | success = buildPerfectHash(outputDir, concatText, tlen, k, SA, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 | numHashThreads); | ~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:1032:21: required from here 1032 | indexTranscriptsSA(transcriptParserPtr.get(), indexDir, decoyNames, noClipPolyA, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 | usePerfectHash, numPerfectHashThreads, keepDuplicates, sepStr, iomutex, jointLog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup, spp::libc_allocator > >::value_type' {aka 'std::pair'} to 'spp::sparsegroup, spp::libc_allocator > >::mutable_reference' {aka 'std::pair&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const int; _U2 = int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = int; _T2 = int]' [-Wcast-user-defined] 1355 | *(mutable_pointer)p = std::move((mutable_reference)val); | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup::_init_val(mutable_value_type*, reference) [with T = std::pair >; Alloc = spp::libc_allocator > >; mutable_value_type = std::pair >; reference = std::pair >&]': /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1407:22: required from 'void spp::sparsegroup::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; allocator_type = spp::libc_allocator > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant]' 1407 | _init_val((mutable_pointer)&_group[num_items], val); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1435:21: required from 'void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; allocator_type = spp::libc_allocator > >; size_type = unsigned char]' 1435 | _set_aux(alloc, offset, val, check_alloc_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from 'spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; pointer = std::pair >*; allocator_type = spp::libc_allocator > >; size_type = unsigned char]' 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from 'spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair >; T = std::pair >; Alloc = spp::libc_allocator > >; reference = std::pair >&; size_type = long unsigned int]' 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair >; Value = std::pair >; Key = long unsigned int; HashFcn = rapmap::utils::KmerKeyHasher; ExtractKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SelectKey; SetKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; reference = std::pair >&; size_type = long unsigned int]' 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::DefaultValue; KT = long unsigned int&; Value = std::pair >; Key = long unsigned int; HashFcn = rapmap::utils::KmerKeyHasher; ExtractKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SelectKey; SetKey = spp::sparse_hash_map, rapmap::utils::KmerKeyHasher, std::equal_to, spp::libc_allocator > > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; value_type = std::pair >]' 3288 | return _insert_at(def, erased ? erased_pos : bucknum, erased); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3810:57: required from 'spp::sparse_hash_map::mapped_type& spp::sparse_hash_map::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = rapmap::utils::SAInterval; HashFcn = rapmap::utils::KmerKeyHasher; EqualKey = std::equal_to; Alloc = spp::libc_allocator > >; mapped_type = rapmap::utils::SAInterval]' 3810 | return rep.template find_or_insert(std::forward(key)).second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:319:18: required from 'bool buildHash(const std::string&, nonstd::sv_lite::string_view, size_t, uint32_t, std::vector<_RealType>&) [with IndexT = int; std::string = std::__cxx11::basic_string; nonstd::sv_lite::string_view = nonstd::sv_lite::basic_string_view; size_t = long unsigned int; uint32_t = unsigned int]' 319 | khash[bits] = {start, stop}; | ~~~~~^ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:863:34: required from 'void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]' 863 | success = buildHash(outputDir, concatText, tlen, k, SA); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:1032:21: required from here 1032 | indexTranscriptsSA(transcriptParserPtr.get(), indexDir, decoyNames, noClipPolyA, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 | usePerfectHash, numPerfectHashThreads, keepDuplicates, sepStr, iomutex, jointLog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup >, spp::libc_allocator > > >::value_type' {aka 'std::pair >'} to 'spp::sparsegroup >, spp::libc_allocator > > >::mutable_reference' {aka 'std::pair >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = rapmap::utils::SAInterval; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = long unsigned int; _T2 = rapmap::utils::SAInterval]' [-Wcast-user-defined] 1339 | ::new (p) value_type(std::move((mutable_reference)val)); | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup::_init_val(mutable_value_type*, reference) [with T = std::pair; Alloc = spp::libc_allocator >; mutable_value_type = std::pair; reference = std::pair&]': /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1390:18: required from 'void spp::sparsegroup::_set_aux(allocator_type&, size_type, Val&, realloc_ok_type) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char; realloc_ok_type = spp::integral_constant]' 1390 | _init_val((mutable_pointer)(_group + offset), val); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1435:21: required from 'void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char]' 1435 | _set_aux(alloc, offset, val, check_alloc_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from 'spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; pointer = std::pair*; allocator_type = spp::libc_allocator >; size_type = unsigned char]' 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from 'spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]' 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair; Value = std::pair; Key = long int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]' 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::DefaultValue; KT = long int; Value = std::pair; Key = long int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; value_type = std::pair]' 3288 | return _insert_at(def, erased ? erased_pos : bucknum, erased); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3810:57: required from 'spp::sparse_hash_map::mapped_type& spp::sparse_hash_map::operator[](KT&&) [with KT = long int; Key = long int; T = long int; HashFcn = spp::spp_hash; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; mapped_type = long int]' 3810 | return rep.template find_or_insert(std::forward(key)).second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/FrugalBooMap.hpp:106:22: required from 'void FrugalBooMap::add(KeyT&&, ValueT&&) [with KeyT = long unsigned int; ValueT = rapmap::utils::SAInterval]' 106 | overflow_[v.begin()] = l; | ~~~~~~~~~^ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:162:24: required from 'bool buildPerfectHash(const std::string&, nonstd::sv_lite::string_view, size_t, uint32_t, std::vector<_RealType>&, uint32_t) [with IndexT = long int; std::string = std::__cxx11::basic_string; nonstd::sv_lite::string_view = nonstd::sv_lite::basic_string_view; size_t = long unsigned int; uint32_t = unsigned int]' 162 | intervals.add(std::move(bits), {start, stop}); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:839:41: required from 'void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]' 839 | success = buildPerfectHash(outputDir, concatText, tlen, k, SA, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 | numHashThreads); | ~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:1032:21: required from here 1032 | indexTranscriptsSA(transcriptParserPtr.get(), indexDir, decoyNames, noClipPolyA, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 | usePerfectHash, numPerfectHashThreads, keepDuplicates, sepStr, iomutex, jointLog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup, spp::libc_allocator > >::value_type' {aka 'std::pair'} to 'spp::sparsegroup, spp::libc_allocator > >::mutable_reference' {aka 'std::pair&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long int; _U2 = long int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = long int; _T2 = long int]' [-Wcast-user-defined] 1339 | ::new (p) value_type(std::move((mutable_reference)val)); | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup::_init_val(mutable_value_type*, reference) [with T = std::pair; Alloc = spp::libc_allocator >; mutable_value_type = std::pair; reference = std::pair&]': /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1390:18: required from 'void spp::sparsegroup::_set_aux(allocator_type&, size_type, Val&, realloc_ok_type) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char; realloc_ok_type = spp::integral_constant]' 1390 | _init_val((mutable_pointer)(_group + offset), val); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1435:21: required from 'void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char]' 1435 | _set_aux(alloc, offset, val, check_alloc_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from 'spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; pointer = std::pair*; allocator_type = spp::libc_allocator >; size_type = unsigned char]' 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from 'spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]' 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair; Value = std::pair; Key = int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]' 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::DefaultValue; KT = int; Value = std::pair; Key = int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; value_type = std::pair]' 3288 | return _insert_at(def, erased ? erased_pos : bucknum, erased); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3810:57: required from 'spp::sparse_hash_map::mapped_type& spp::sparse_hash_map::operator[](KT&&) [with KT = int; Key = int; T = int; HashFcn = spp::spp_hash; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; mapped_type = int]' 3810 | return rep.template find_or_insert(std::forward(key)).second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/FrugalBooMap.hpp:106:22: required from 'void FrugalBooMap::add(KeyT&&, ValueT&&) [with KeyT = long unsigned int; ValueT = rapmap::utils::SAInterval]' 106 | overflow_[v.begin()] = l; | ~~~~~~~~~^ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:162:24: required from 'bool buildPerfectHash(const std::string&, nonstd::sv_lite::string_view, size_t, uint32_t, std::vector<_RealType>&, uint32_t) [with IndexT = int; std::string = std::__cxx11::basic_string; nonstd::sv_lite::string_view = nonstd::sv_lite::basic_string_view; size_t = long unsigned int; uint32_t = unsigned int]' 162 | intervals.add(std::move(bits), {start, stop}); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:860:41: required from 'void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser; std::string = std::__cxx11::basic_string; uint32_t = unsigned int]' 860 | success = buildPerfectHash(outputDir, concatText, tlen, k, SA, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 | numHashThreads); | ~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:1032:21: required from here 1032 | indexTranscriptsSA(transcriptParserPtr.get(), indexDir, decoyNames, noClipPolyA, | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 | usePerfectHash, numPerfectHashThreads, keepDuplicates, sepStr, iomutex, jointLog); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup, spp::libc_allocator > >::value_type' {aka 'std::pair'} to 'spp::sparsegroup, spp::libc_allocator > >::mutable_reference' {aka 'std::pair&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const int; _U2 = int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = int; _T2 = int]' [-Wcast-user-defined] 1339 | ::new (p) value_type(std::move((mutable_reference)val)); | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/rapmap-0.15.0+dfsg/include/RapMapUtils.hpp:29: /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup::_set_val(value_type*, reference) [with T = std::pair; Alloc = spp::libc_allocator >; value_type = std::pair; reference = std::pair&]': /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1440:21: required from 'void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char]' 1440 | _set_val(&_group[offset], val); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from 'spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; pointer = std::pair*; allocator_type = spp::libc_allocator >; size_type = unsigned char]' 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from 'spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]' 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair; Value = std::pair; Key = long int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]' 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/rapmap-0.15.0+dfsg/include/FrugalBooMap.hpp:162:30: required from 'FrugalBooMap::IteratorT FrugalBooMap::find(const KeyT&) [with KeyT = long unsigned int; ValueT = rapmap::utils::SAInterval; IteratorT = KVProxy<__gnu_cxx::__normal_iterator > >, rapmap::utils::SAInterval >]' 162 | l = overflow_[ind]; | ~~~~~~~~~^ /build/reproducible-path/rapmap-0.15.0+dfsg/include/SACollector.hpp:196:25: required from 'bool SACollector::operator()(std::string&, SASearcher&, rapmap::hit_manager::HitCollectorInfo >&) [with RapMapIndexT = RapMapSAIndex > >; std::string = std::__cxx11::basic_string; typename RapMapIndexT::IndexType = long int]' 196 | merIt = khash.find(mer.word(0));//get_bits(0, 2 * k)); | ~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:472:35: required from 'void processReadsPairSA(paired_parser*, RapMapIndexT&, MutexT*, std::shared_ptr, HitCounters&, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >; MutexT = std::mutex; paired_parser = fastx_parser::FastxParser; HitCounters = rapmap::utils::HitCounters]' 472 | bool lh = hitCollector(rpair.first.seq, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 473 | saSearcher, | ~~~~~~~~~~~ 474 | leftHCInfo); | ~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:765:37: required from 'bool spawnProcessReadsThreads(uint32_t, paired_parser*, RapMapIndexT&, MutexT&, std::shared_ptr, HitCounters&, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >; MutexT = std::mutex; uint32_t = unsigned int; paired_parser = fastx_parser::FastxParser; HitCounters = rapmap::utils::HitCounters]' 765 | threads.emplace_back(processReadsPairSA, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 | parser, | ~~~~~~~ 767 | std::ref(rmi), | ~~~~~~~~~~~~~~ 768 | &iomutex, | ~~~~~~~~~ 769 | outQueue, | ~~~~~~~~~ 770 | std::ref(hctr), | ~~~~~~~~~~~~~~~ 771 | mopts); | ~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:872:31: required from 'bool mapReads(RapMapIndexT&, std::shared_ptr, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >]' 872 | spawnProcessReadsThreads(nthread, pairParserPtr.get(), rmi, iomutex, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 | outLog, hctrs, mopts); | ~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:1217:29: required from here 1217 | success = mapReads(rmi, consoleLog, &mopts); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup, spp::libc_allocator > >::value_type' {aka 'std::pair'} to 'spp::sparsegroup, spp::libc_allocator > >::mutable_reference' {aka 'std::pair&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long int; _U2 = long int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = long int; _T2 = long int]' [-Wcast-user-defined] 1355 | *(mutable_pointer)p = std::move((mutable_reference)val); | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup::_set_val(value_type*, reference) [with T = std::pair; Alloc = spp::libc_allocator >; value_type = std::pair; reference = std::pair&]': /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1440:21: required from 'void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char]' 1440 | _set_val(&_group[offset], val); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from 'spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; pointer = std::pair*; allocator_type = spp::libc_allocator >; size_type = unsigned char]' 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from 'spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]' 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair; Value = std::pair; Key = int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]' 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/rapmap-0.15.0+dfsg/include/FrugalBooMap.hpp:162:30: required from 'FrugalBooMap::IteratorT FrugalBooMap::find(const KeyT&) [with KeyT = long unsigned int; ValueT = rapmap::utils::SAInterval; IteratorT = KVProxy<__gnu_cxx::__normal_iterator >, rapmap::utils::SAInterval >]' 162 | l = overflow_[ind]; | ~~~~~~~~~^ /build/reproducible-path/rapmap-0.15.0+dfsg/include/SACollector.hpp:196:25: required from 'bool SACollector::operator()(std::string&, SASearcher&, rapmap::hit_manager::HitCollectorInfo >&) [with RapMapIndexT = RapMapSAIndex > >; std::string = std::__cxx11::basic_string; typename RapMapIndexT::IndexType = int]' 196 | merIt = khash.find(mer.word(0));//get_bits(0, 2 * k)); | ~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:472:35: required from 'void processReadsPairSA(paired_parser*, RapMapIndexT&, MutexT*, std::shared_ptr, HitCounters&, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >; MutexT = std::mutex; paired_parser = fastx_parser::FastxParser; HitCounters = rapmap::utils::HitCounters]' 472 | bool lh = hitCollector(rpair.first.seq, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 473 | saSearcher, | ~~~~~~~~~~~ 474 | leftHCInfo); | ~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:765:37: required from 'bool spawnProcessReadsThreads(uint32_t, paired_parser*, RapMapIndexT&, MutexT&, std::shared_ptr, HitCounters&, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >; MutexT = std::mutex; uint32_t = unsigned int; paired_parser = fastx_parser::FastxParser; HitCounters = rapmap::utils::HitCounters]' 765 | threads.emplace_back(processReadsPairSA, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 | parser, | ~~~~~~~ 767 | std::ref(rmi), | ~~~~~~~~~~~~~~ 768 | &iomutex, | ~~~~~~~~~ 769 | outQueue, | ~~~~~~~~~ 770 | std::ref(hctr), | ~~~~~~~~~~~~~~~ 771 | mopts); | ~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:872:31: required from 'bool mapReads(RapMapIndexT&, std::shared_ptr, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >]' 872 | spawnProcessReadsThreads(nthread, pairParserPtr.get(), rmi, iomutex, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 | outLog, hctrs, mopts); | ~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:1232:31: required from here 1232 | success = mapReads(rmi, consoleLog, &mopts); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup, spp::libc_allocator > >::value_type' {aka 'std::pair'} to 'spp::sparsegroup, spp::libc_allocator > >::mutable_reference' {aka 'std::pair&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const int; _U2 = int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = int; _T2 = int]' [-Wcast-user-defined] 1355 | *(mutable_pointer)p = std::move((mutable_reference)val); | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup::_init_val(mutable_value_type*, reference) [with T = std::pair; Alloc = spp::libc_allocator >; mutable_value_type = std::pair; reference = std::pair&]': /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1390:18: required from 'void spp::sparsegroup::_set_aux(allocator_type&, size_type, Val&, realloc_ok_type) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char; realloc_ok_type = spp::integral_constant]' 1390 | _init_val((mutable_pointer)(_group + offset), val); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1435:21: required from 'void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char]' 1435 | _set_aux(alloc, offset, val, check_alloc_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from 'spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; pointer = std::pair*; allocator_type = spp::libc_allocator >; size_type = unsigned char]' 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from 'spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]' 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair; Value = std::pair; Key = long int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]' 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/rapmap-0.15.0+dfsg/include/FrugalBooMap.hpp:162:30: required from 'FrugalBooMap::IteratorT FrugalBooMap::find(const KeyT&) [with KeyT = long unsigned int; ValueT = rapmap::utils::SAInterval; IteratorT = KVProxy<__gnu_cxx::__normal_iterator > >, rapmap::utils::SAInterval >]' 162 | l = overflow_[ind]; | ~~~~~~~~~^ /build/reproducible-path/rapmap-0.15.0+dfsg/include/SACollector.hpp:196:25: required from 'bool SACollector::operator()(std::string&, SASearcher&, rapmap::hit_manager::HitCollectorInfo >&) [with RapMapIndexT = RapMapSAIndex > >; std::string = std::__cxx11::basic_string; typename RapMapIndexT::IndexType = long int]' 196 | merIt = khash.find(mer.word(0));//get_bits(0, 2 * k)); | ~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:472:35: required from 'void processReadsPairSA(paired_parser*, RapMapIndexT&, MutexT*, std::shared_ptr, HitCounters&, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >; MutexT = std::mutex; paired_parser = fastx_parser::FastxParser; HitCounters = rapmap::utils::HitCounters]' 472 | bool lh = hitCollector(rpair.first.seq, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 473 | saSearcher, | ~~~~~~~~~~~ 474 | leftHCInfo); | ~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:765:37: required from 'bool spawnProcessReadsThreads(uint32_t, paired_parser*, RapMapIndexT&, MutexT&, std::shared_ptr, HitCounters&, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >; MutexT = std::mutex; uint32_t = unsigned int; paired_parser = fastx_parser::FastxParser; HitCounters = rapmap::utils::HitCounters]' 765 | threads.emplace_back(processReadsPairSA, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 | parser, | ~~~~~~~ 767 | std::ref(rmi), | ~~~~~~~~~~~~~~ 768 | &iomutex, | ~~~~~~~~~ 769 | outQueue, | ~~~~~~~~~ 770 | std::ref(hctr), | ~~~~~~~~~~~~~~~ 771 | mopts); | ~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:872:31: required from 'bool mapReads(RapMapIndexT&, std::shared_ptr, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >]' 872 | spawnProcessReadsThreads(nthread, pairParserPtr.get(), rmi, iomutex, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 | outLog, hctrs, mopts); | ~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:1217:29: required from here 1217 | success = mapReads(rmi, consoleLog, &mopts); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup, spp::libc_allocator > >::value_type' {aka 'std::pair'} to 'spp::sparsegroup, spp::libc_allocator > >::mutable_reference' {aka 'std::pair&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long int; _U2 = long int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = long int; _T2 = long int]' [-Wcast-user-defined] 1339 | ::new (p) value_type(std::move((mutable_reference)val)); | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup::_init_val(mutable_value_type*, reference) [with T = std::pair; Alloc = spp::libc_allocator >; mutable_value_type = std::pair; reference = std::pair&]': /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1390:18: required from 'void spp::sparsegroup::_set_aux(allocator_type&, size_type, Val&, realloc_ok_type) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char; realloc_ok_type = spp::integral_constant]' 1390 | _init_val((mutable_pointer)(_group + offset), val); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1435:21: required from 'void spp::sparsegroup::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; allocator_type = spp::libc_allocator >; size_type = unsigned char]' 1435 | _set_aux(alloc, offset, val, check_alloc_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1453:13: required from 'spp::sparsegroup::value_type* spp::sparsegroup::set(allocator_type&, size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; pointer = std::pair*; allocator_type = spp::libc_allocator >; size_type = unsigned char]' 1453 | _set(alloc, i, offset, val); // may change _group pointer | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:2241:28: required from 'spp::sparsetable::value_type& spp::sparsetable::set(size_type, Val&) [with Val = std::pair; T = std::pair; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]' 2241 | pointer p(group.set(_alloc, pos_in_group(i), val)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3171:25: required from 'spp::sparse_hashtable::value_type& spp::sparse_hashtable::_insert_at(T&, size_type, bool) [with T = std::pair; Value = std::pair; Key = int; HashFcn = spp::spp_hash; ExtractKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SelectKey; SetKey = spp::sparse_hash_map, std::equal_to, spp::libc_allocator > >::SetKey; EqualKey = std::equal_to; Alloc = spp::libc_allocator >; reference = std::pair&; size_type = long unsigned int]' 3171 | return table.set(pos, obj); | ~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:3288:38: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/reproducible-path/rapmap-0.15.0+dfsg/include/FrugalBooMap.hpp:162:30: required from 'FrugalBooMap::IteratorT FrugalBooMap::find(const KeyT&) [with KeyT = long unsigned int; ValueT = rapmap::utils::SAInterval; IteratorT = KVProxy<__gnu_cxx::__normal_iterator >, rapmap::utils::SAInterval >]' 162 | l = overflow_[ind]; | ~~~~~~~~~^ /build/reproducible-path/rapmap-0.15.0+dfsg/include/SACollector.hpp:196:25: required from 'bool SACollector::operator()(std::string&, SASearcher&, rapmap::hit_manager::HitCollectorInfo >&) [with RapMapIndexT = RapMapSAIndex > >; std::string = std::__cxx11::basic_string; typename RapMapIndexT::IndexType = int]' 196 | merIt = khash.find(mer.word(0));//get_bits(0, 2 * k)); | ~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:472:35: required from 'void processReadsPairSA(paired_parser*, RapMapIndexT&, MutexT*, std::shared_ptr, HitCounters&, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >; MutexT = std::mutex; paired_parser = fastx_parser::FastxParser; HitCounters = rapmap::utils::HitCounters]' 472 | bool lh = hitCollector(rpair.first.seq, | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 473 | saSearcher, | ~~~~~~~~~~~ 474 | leftHCInfo); | ~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:765:37: required from 'bool spawnProcessReadsThreads(uint32_t, paired_parser*, RapMapIndexT&, MutexT&, std::shared_ptr, HitCounters&, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >; MutexT = std::mutex; uint32_t = unsigned int; paired_parser = fastx_parser::FastxParser; HitCounters = rapmap::utils::HitCounters]' 765 | threads.emplace_back(processReadsPairSA, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 | parser, | ~~~~~~~ 767 | std::ref(rmi), | ~~~~~~~~~~~~~~ 768 | &iomutex, | ~~~~~~~~~ 769 | outQueue, | ~~~~~~~~~ 770 | std::ref(hctr), | ~~~~~~~~~~~~~~~ 771 | mopts); | ~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:872:31: required from 'bool mapReads(RapMapIndexT&, std::shared_ptr, MappingOpts*) [with RapMapIndexT = RapMapSAIndex > >]' 872 | spawnProcessReadsThreads(nthread, pairParserPtr.get(), rmi, iomutex, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 873 | outLog, hctrs, mopts); | ~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:1232:31: required from here 1232 | success = mapReads(rmi, consoleLog, &mopts); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/rapmap-0.15.0+dfsg/include/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup, spp::libc_allocator > >::value_type' {aka 'std::pair'} to 'spp::sparsegroup, spp::libc_allocator > >::mutable_reference' {aka 'std::pair&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const int; _U2 = int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type = true; _T1 = int; _T2 = int]' [-Wcast-user-defined] 1339 | ::new (p) value_type(std::move((mutable_reference)val)); | ^~~~~~~~~~~~~~~~~~~~~~ cc1plus: note: unrecognized command-line option '-Wno-unused-local-typedef' may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option '-Wno-unused-local-typedef' may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option '-Wno-unused-local-typedef' may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option '-Wno-unused-local-typedef' may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option '-Wno-unused-local-typedef' may have been intended to silence earlier diagnostics In file included from /build/reproducible-path/rapmap-0.15.0+dfsg/include/digestpp/algorithm/sha2.hpp:9, from /build/reproducible-path/rapmap-0.15.0+dfsg/include/digestpp/digestpp.hpp:6, from /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:73: In member function 'void digestpp::detail::sha2_provider::transform(const unsigned char*, size_t) [with T = long unsigned int; long unsigned int O = 0]', inlined from 'digestpp::detail::sha2_provider::update(const unsigned char*, size_t)::' at /build/reproducible-path/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:169:61, inlined from 'void digestpp::detail::absorb_bytes(const unsigned char*, size_t, size_t, size_t, unsigned char*, size_t&, T&, TF) [with T = long unsigned int; TF = sha2_provider::update(const unsigned char*, size_t)::]' at /build/reproducible-path/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/../../detail/absorb_data.hpp:32:12, inlined from 'void digestpp::detail::sha2_provider::update(const unsigned char*, size_t) [with T = long unsigned int; long unsigned int O = 0]' at /build/reproducible-path/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:168:23, inlined from 'digestpp::hasher& digestpp::hasher::absorb(IT, IT) [with IT = __gnu_cxx::__normal_iterator >; HashProvider = digestpp::detail::sha2_provider; Mixin = digestpp::mixin::null_mixin]' at /build/reproducible-path/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:170:19, inlined from 'void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]' at /build/reproducible-path/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:581:30: /build/reproducible-path/rapmap-0.15.0+dfsg/include/digestpp/algorithm/detail/sha2_provider.hpp:208:48: warning: array subscript 'const long unsigned int[0]' is partly outside array bounds of 'unsigned char [1]' [-Warray-bounds=] 208 | M[i] = byteswap(reinterpret_cast(data)[blk * 16 + i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/rapmap-0.15.0+dfsg/include/digestpp/digestpp.hpp:5: /build/reproducible-path/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp: In function 'void indexTranscriptsSA(ParserT*, std::string&, spp::sparse_hash_set >&, bool, bool, uint32_t, bool, std::string&, std::mutex&, std::shared_ptr) [with ParserT = fastx_parser::FastxParser]': /build/reproducible-path/rapmap-0.15.0+dfsg/include/digestpp/hasher.hpp:169:39: note: object 'byte' of size 1 169 | unsigned char byte = *begin++; | ^~~~ At global scope: cc1plus: note: unrecognized command-line option '-Wno-unused-local-typedef' may have been intended to silence earlier diagnostics At global scope: cc1plus: note: unrecognized command-line option '-Wno-unused-local-typedef' may have been intended to silence earlier diagnostics [100%] Linking CXX executable rapmap cd /build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/rapmap.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/rapmap-0.15.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -Wl,-z,relro -Wl,-z,now CMakeFiles/rapmap.dir/RapMap.cpp.o CMakeFiles/rapmap.dir/RapMapSAIndexer.cpp.o CMakeFiles/rapmap.dir/RapMapUtils.cpp.o CMakeFiles/rapmap.dir/RapMapSAMapper.cpp.o CMakeFiles/rapmap.dir/RapMapFileSystem.cpp.o CMakeFiles/rapmap.dir/RapMapSAIndex.cpp.o CMakeFiles/rapmap.dir/HitManager.cpp.o CMakeFiles/rapmap.dir/FastxParser.cpp.o CMakeFiles/rapmap.dir/rank9b.cpp.o CMakeFiles/rapmap.dir/stringpiece.cc.o CMakeFiles/rapmap.dir/xxhash.c.o CMakeFiles/rapmap.dir/bit_array.c.o CMakeFiles/rapmap.dir/edlib.cpp.o CMakeFiles/rapmap.dir/metro/metrohash64.cpp.o -o rapmap -L/build/reproducible-path/rapmap-0.15.0+dfsg/lib -L/build/reproducible-path/rapmap-0.15.0+dfsg/external/install/lib -Wl,-rpath,"\$ORIGIN/../lib:\$ORIGIN/../../lib:\$ORIGIN/:\$ORIGIN/../../external/install/lib" /usr/lib/aarch64-linux-gnu/libz.so -ldivsufsort -ldivsufsort64 -lm -lz /usr/lib/aarch64-linux-gnu/libjemalloc.so -lrt libksw2pp.a -ldl /usr/bin/ld: libksw2pp.a(KSW2Aligner.cpp.o): in function `ksw2pp::KSW2Aligner::operator()(unsigned char const*, int, unsigned char const*, int, ksw_extz_t*, ksw2pp::EnumToType<(ksw2pp::KSW2AlignmentType)2>)': ./obj-aarch64-linux-gnu/src/./src/ksw2pp/KSW2Aligner.cpp:362:(.text+0x4dc): undefined reference to `ksw_extz2_sse2' /usr/bin/ld: ./obj-aarch64-linux-gnu/src/./src/ksw2pp/KSW2Aligner.cpp:358:(.text+0x510): undefined reference to `ksw_extz2_sse41' /usr/bin/ld: libksw2pp.a(KSW2Aligner.cpp.o): in function `ksw2pp::KSW2Aligner::operator()(char const*, int, char const*, int, ksw_extz_t*, ksw2pp::EnumToType<(ksw2pp::KSW2AlignmentType)2>)': ./obj-aarch64-linux-gnu/src/./src/ksw2pp/KSW2Aligner.cpp:227:(.text+0x1088): undefined reference to `ksw_extz2_sse2' /usr/bin/ld: ./obj-aarch64-linux-gnu/src/./src/ksw2pp/KSW2Aligner.cpp:223:(.text+0x10cc): undefined reference to `ksw_extz2_sse41' collect2: error: ld returned 1 exit status make[4]: *** [src/CMakeFiles/rapmap.dir/build.make:311: src/rapmap] Error 1 make[4]: Leaving directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' make[3]: *** [CMakeFiles/Makefile2:134: src/CMakeFiles/rapmap.dir/all] Error 2 make[3]: Leaving directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' make[2]: *** [Makefile:169: all] Error 2 make[2]: Leaving directory '/build/reproducible-path/rapmap-0.15.0+dfsg/obj-aarch64-linux-gnu' dh_auto_build: error: cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 returned exit code 2 make[1]: *** [debian/rules:23: override_dh_auto_build] Error 25 make[1]: Leaving directory '/build/reproducible-path/rapmap-0.15.0+dfsg' make: *** [debian/rules:17: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/84363 and its subdirectories rapmap failed to build from source. removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/rapmap_0.15.0+dfsg-4.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/rapmap_0.15.0+dfsg-4.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/rapmap_0.15.0+dfsg-4.build1.log.gz' Fri Sep 27 15:08:42 UTC 2024 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 91.5% -- replaced with stdout INSERT 0 1 INSERT 0 1 DELETE 1 [2024-09-27 15:08:43] INFO: Starting at 2024-09-27 15:08:43.393913 [2024-09-27 15:08:43] INFO: Generating the pages of 1 package(s) [2024-09-27 15:08:44] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/rapmap_0.15.0+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/rapmap_0.15.0+dfsg-4.diff.gz is missing [2024-09-27 15:08:44] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/rapmap_0.15.0+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/rapmap_0.15.0+dfsg-4.diff.gz is missing [2024-09-27 15:08:44] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/rapmap_0.15.0+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/rapmap_0.15.0+dfsg-4.diff.gz is missing [2024-09-27 15:08:44] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/arm64/rapmap didn't produce a buildlog, even though it has been built. [2024-09-27 15:08:44] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/rapmap_0.15.0+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/rapmap_0.15.0+dfsg-4.diff.gz is missing [2024-09-27 15:08:44] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/rapmap_0.15.0+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/rapmap_0.15.0+dfsg-4.diff.gz is missing [2024-09-27 15:08:44] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/rapmap_0.15.0+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/arm64/rapmap_0.15.0+dfsg-3.diff.gz is missing [2024-09-27 15:08:44] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/rapmap_0.15.0+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/rapmap_0.15.0+dfsg-3.diff.gz is missing [2024-09-27 15:08:44] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/rapmap_0.15.0+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/rapmap_0.15.0+dfsg-3.diff.gz is missing [2024-09-27 15:08:44] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/rapmap_0.15.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/rapmap_0.15.0+dfsg-1.diff.gz is missing [2024-09-27 15:08:44] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/rapmap_0.15.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/rapmap_0.15.0+dfsg-1.diff.gz is missing [2024-09-27 15:08:44] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/rapmap_0.15.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/rapmap_0.15.0+dfsg-1.diff.gz is missing [2024-09-27 15:08:44] INFO: Finished at 2024-09-27 15:08:44.617624, took: 0:00:01.223716 Fri Sep 27 15:08:44 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/arm64/rapmap.html Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/rapmap_0.15.0+dfsg-4.rbuild.log: 90.8% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/rapmap_0.15.0+dfsg-4.rbuild.log.gz [2024-09-27 15:08:45] INFO: Starting at 2024-09-27 15:08:45.061734 [2024-09-27 15:08:45] INFO: Generating the pages of 1 package(s) [2024-09-27 15:08:46] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/rapmap_0.15.0+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/rapmap_0.15.0+dfsg-4.diff.gz is missing [2024-09-27 15:08:46] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/rapmap_0.15.0+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/rapmap_0.15.0+dfsg-4.diff.gz is missing [2024-09-27 15:08:46] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/rapmap_0.15.0+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/rapmap_0.15.0+dfsg-4.diff.gz is missing [2024-09-27 15:08:46] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/rapmap_0.15.0+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/rapmap_0.15.0+dfsg-4.diff.gz is missing [2024-09-27 15:08:46] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/rapmap_0.15.0+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/rapmap_0.15.0+dfsg-4.diff.gz is missing [2024-09-27 15:08:46] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/rapmap_0.15.0+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/rapmap_0.15.0+dfsg-4.diff.gz is missing [2024-09-27 15:08:46] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/rapmap_0.15.0+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/arm64/rapmap_0.15.0+dfsg-3.diff.gz is missing [2024-09-27 15:08:46] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/rapmap_0.15.0+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/rapmap_0.15.0+dfsg-3.diff.gz is missing [2024-09-27 15:08:46] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/rapmap_0.15.0+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/rapmap_0.15.0+dfsg-3.diff.gz is missing [2024-09-27 15:08:46] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/rapmap_0.15.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/rapmap_0.15.0+dfsg-1.diff.gz is missing [2024-09-27 15:08:46] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/rapmap_0.15.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/rapmap_0.15.0+dfsg-1.diff.gz is missing [2024-09-27 15:08:46] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/rapmap_0.15.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/rapmap_0.15.0+dfsg-1.diff.gz is missing [2024-09-27 15:08:46] INFO: Finished at 2024-09-27 15:08:46.225697, took: 0:00:01.163970 All cleanup done. Fri Sep 27 15:08:46 UTC 2024 - total duration: 0h 1m 36s. Fri Sep 27 15:08:46 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-StqVMro0, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1min 39.469s CPU time consumed: 7.328s