Running as unit: rb-build-arm64_7-37885.service ==================================================================================== Sat Sep 28 09:38:22 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_7) on jenkins, called using "codethink02-arm64 codethink03-arm64" as arguments. Sat Sep 28 09:38:22 UTC 2024 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-6daib1xm" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Sep 28 09:38:22 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink02-arm64.debian.net is marked as down. Sat Sep 28 09:38:22 UTC 2024 - checking via ssh if codethink02-arm64.debian.net is up. removed '/tmp/read-only-fs-test-zfQaQG' Sat Sep 28 09:38:23 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Sat Sep 28 09:38:23 UTC 2024 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-vHCfXv' ok, let's check if unicycler is building anywhere yet… ok, unicycler is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of unicycler in trixie on arm64 on jenkins now. 1st build will be done on codethink02-arm64.debian.net. 2nd build will be done on codethink03-arm64.debian.net. ============================================================================= Sat Sep 28 09:38:31 UTC 2024 I: starting to build unicycler/trixie/arm64 on jenkins on '2024-09-28 09:38' Sat Sep 28 09:38:31 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_7/37885/console.log 1727516311 arm64 trixie unicycler Sat Sep 28 09:38:31 UTC 2024 I: Downloading source for trixie/unicycler=0.5.0+dfsg-1 --2024-09-28 09:38:31-- http://deb.debian.org/debian/pool/main/u/unicycler/unicycler_0.5.0%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2379 (2.3K) [text/prs.lines.tag] Saving to: ‘unicycler_0.5.0+dfsg-1.dsc’ 0K .. 100% 345M=0s 2024-09-28 09:38:31 (345 MB/s) - ‘unicycler_0.5.0+dfsg-1.dsc’ saved [2379/2379] --2024-09-28 09:38:31-- http://deb.debian.org/debian/pool/main/u/unicycler/unicycler_0.5.0%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2379 (2.3K) [text/prs.lines.tag] Saving to: ‘unicycler_0.5.0+dfsg-1.dsc’ 0K .. 100% 345M=0s 2024-09-28 09:38:31 (345 MB/s) - ‘unicycler_0.5.0+dfsg-1.dsc’ saved [2379/2379] Sat Sep 28 09:38:31 UTC 2024 I: unicycler_0.5.0+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: unicycler Binary: unicycler, unicycler-data Architecture: any all Version: 0.5.0+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Liubov Chuprikova Homepage: https://github.com/rrwick/Unicycler Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/unicycler Vcs-Git: https://salsa.debian.org/med-team/unicycler.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@ Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, default-jdk , bcftools, bowtie2 , miniasm, ncbi-blast+ , pilon , racon, samtools , spades (>= 3.14), libseqan2-dev, zlib1g-dev Package-List: unicycler deb science optional arch=any unicycler-data deb science optional arch=all Checksums-Sha1: 32c902b29cc4052d3a54417d168c89138f473095 14771144 unicycler_0.5.0+dfsg.orig.tar.xz c53b757f9382602a22a7d1005dd902d0d31fb44b 11900 unicycler_0.5.0+dfsg-1.debian.tar.xz Checksums-Sha256: 99c484ed663d916854bcdd7f1508f97f4de044f36fcc4614d2fd99d78fa1cbdd 14771144 unicycler_0.5.0+dfsg.orig.tar.xz 88e21882618f0cc45d67a402754f6210f60c8f30a108040823a4f14a060de16b 11900 unicycler_0.5.0+dfsg-1.debian.tar.xz Files: 2639d42c79fca3047358b09fc30c81e7 14771144 unicycler_0.5.0+dfsg.orig.tar.xz 6802bb6e98bbd404a7bab6b2d0ae58af 11900 unicycler_0.5.0+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmOPYBQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGStg/+Pp5SZSF+95IlY++zevAYthuMTWrWX5aO rJ/YdvGG8vvbL2ONV/A7mt9pqIZUFREk6FagvN9kF0Nm/SYchfK3yB77JPt2elYv B0qmFym//qOO8mctyPnUxD5dDlGSlilRKitm6vTfTnpemI/PgzYnf7CqhwNNW1uV 0956tVDBqyw36vqET0VlCMB/z0/VDVTtJ9/HPXPK31KSzzpPKmO9PD/SpVmSK9l3 pTnjK9jfBbZvfU6l8nnCM5zyXKOo1I0/ZDcBbecQh3YFU1qKGsg1z0PKldcDLdAk ljphiNP/J0V7XgMdVcNLf207KwvtNS0TMAn/ewuN7EAGUQY3XPKG8BztISP9KaCd fa6FoFpOvklN+BtsHzIm3Jvz52KobA/X0rzd5K5OCxPSKmz5UMuKPF7sWlttp16A RPs6w8P/51sOOjw3Z1knXkqzRlPXsXaHOk5MsirYypll6zauCHA0IoGCwcalyKE+ 2nTDltgrE9B76j857VcxCnvpdeXVhkW284DVWd0G5uwymgizzBZPFT8R7+SUamOO ALbCIcKIouLRbMSu+I2ralxOucKsqd1hgmDhtvXqzHgCXOvnVpyewUgR90pw5POJ iC1DNIhYDHCt+5zyj7+EpGgnPYq1NqRxDprqquLrCx4B8QCLzq1V+Q3fBHFH3oUB GXOZ8zj5LJ8= =uCIi -----END PGP SIGNATURE----- Sat Sep 28 09:38:31 UTC 2024 I: Checking whether the package is not for us Sat Sep 28 09:38:31 UTC 2024 I: Starting 1st build on remote node codethink02-arm64.debian.net. Sat Sep 28 09:38:31 UTC 2024 I: Preparing to do remote build '1' on codethink02-arm64.debian.net. Sat Sep 28 09:38:31 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink02-arm64.debian.net is marked as down. Sat Sep 28 09:38:31 UTC 2024 - checking via ssh if codethink02-arm64.debian.net is up. removed '/tmp/read-only-fs-test-HpV2hT' ==================================================================================== Sat Sep 28 09:38:33 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink02-arm64, called using "1 unicycler trixie /srv/reproducible-results/rbuild-debian/r-b-build.BxyR2Gkn 0.5.0+dfsg-1" as arguments. Sat Sep 28 09:38:33 UTC 2024 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-97K9oNd8" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Sep 28 09:38:33 UTC 2024 I: Downloading source for trixie/unicycler=0.5.0+dfsg-1 Reading package lists... NOTICE: 'unicycler' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/unicycler.git Please use: git clone https://salsa.debian.org/med-team/unicycler.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 14.8 MB of source archives. Get:1 http://deb.debian.org/debian trixie/main unicycler 0.5.0+dfsg-1 (dsc) [2379 B] Get:2 http://deb.debian.org/debian trixie/main unicycler 0.5.0+dfsg-1 (tar) [14.8 MB] Get:3 http://deb.debian.org/debian trixie/main unicycler 0.5.0+dfsg-1 (diff) [11.9 kB] Fetched 14.8 MB in 0s (49.7 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'unicycler' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/unicycler.git Please use: git clone https://salsa.debian.org/med-team/unicycler.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 14.8 MB of source archives. Get:1 http://deb.debian.org/debian trixie/main unicycler 0.5.0+dfsg-1 (dsc) [2379 B] Get:2 http://deb.debian.org/debian trixie/main unicycler 0.5.0+dfsg-1 (tar) [14.8 MB] Get:3 http://deb.debian.org/debian trixie/main unicycler 0.5.0+dfsg-1 (diff) [11.9 kB] Fetched 14.8 MB in 0s (49.7 MB/s) Download complete and in download only mode ============================================================================= Building unicycler in trixie on arm64 on codethink02-arm64 now. Date: Sat Sep 28 10:38:34 BST 2024 Date UTC: Sat Sep 28 09:38:34 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Sep 27 21:38:34 -12 2024 I: pbuilder-time-stamp: 1727516314 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [unicycler_0.5.0+dfsg-1.dsc] I: copying [./unicycler_0.5.0+dfsg.orig.tar.xz] I: copying [./unicycler_0.5.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Dec 6 15:30:28 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./unicycler_0.5.0+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting unicycler in unicycler-0.5.0+dfsg dpkg-source: info: unpacking unicycler_0.5.0+dfsg.orig.tar.xz dpkg-source: info: unpacking unicycler_0.5.0+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spades.patch dpkg-source: info: applying install_wo_extra_steps.patch dpkg-source: info: applying append_flags I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3228304/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='ac8a39492ae74e8aa5a1e4f84b78f39e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3228304' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.BxyR2Gkn/pbuilderrc_Wvm5 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.BxyR2Gkn/b1 --logfile b1/build.log unicycler_0.5.0+dfsg-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3228304/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, default-jdk, bcftools, bowtie2, miniasm, ncbi-blast+, pilon, racon, samtools, spades (>= 3.14), libseqan2-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19900 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on default-jdk; however: Package default-jdk is not installed. pbuilder-satisfydepends-dummy depends on bcftools; however: Package bcftools is not installed. pbuilder-satisfydepends-dummy depends on bowtie2; however: Package bowtie2 is not installed. pbuilder-satisfydepends-dummy depends on miniasm; however: Package miniasm is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+; however: Package ncbi-blast+ is not installed. pbuilder-satisfydepends-dummy depends on pilon; however: Package pilon is not installed. pbuilder-satisfydepends-dummy depends on racon; however: Package racon is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on spades (>= 3.14); however: Package spades is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev; however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bcftools{a} bowtie2{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} java-common{a} java-wrappers{a} libapache-pom-java{a} libapparmor1{a} libarchive-zip-perl{a} libasound2-data{a} libasound2t64{a} libatk-bridge2.0-0t64{a} libatk1.0-0t64{a} libatspi2.0-0t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libcairo-gobject2{a} libcairo2{a} libcloudproviders0{a} libcolord2{a} libcom-err2{a} libcommons-compress-java{a} libcommons-jexl2-java{a} libcommons-lang-java{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2t64{a} libcurl3t64-gnutls{a} libdatrie1{a} libdbus-1-3{a} libdconf1{a} libdebhelper-perl{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libedlib1{a} libelf1t64{a} libepoxy0{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgtk-3-0t64{a} libgtk-3-common{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libhtsjdk-java{a} libicu72{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libllvm18{a} liblmdb0{a} libmagic-mgc{a} libmagic1t64{a} libmbedcrypto7t64{a} libmbedtls14t64{a} libmbedx509-1t64{a} libmjson-java{a} libncbi-ngs3{a} libncbi-vdb3{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngs-java{a} libngs-jni{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libnspr4{a} libnss3{a} libpam-systemd{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librhino-java{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libseqan2-dev{a} libsharpyuv0{a} libsnappy-java{a} libsnappy-jni{a} libsnappy1v5{a} libspoa7.0.0{a} libssh2-1t64{a} libsystemd-shared{a} libthai-data{a} libthai0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libvulkan1{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1{a} libwayland-server0{a} libwebp7{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxkbcommon0{a} libxml2{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxtst6{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} miniasm{a} ncbi-blast+{a} ncbi-data{a} ncbi-vdb-data{a} netbase{a} openjdk-21-jdk{a} openjdk-21-jdk-headless{a} openjdk-21-jre{a} openjdk-21-jre-headless{a} openssl{a} pilon{a} po-debconf{a} procps{a} python3{a} python3-all{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} racon{a} readline-common{a} samtools{a} scala-library{a} sensible-utils{a} shared-mime-info{a} systemd{a} systemd-sysv{a} tzdata{a} unzip{a} x11-common{a} xkb-data{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf at-spi2-core chrony curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libatk-wrapper-java-jni libgdk-pixbuf2.0-bin libglib2.0-data libgpm2 libgtk-3-bin libkmod2 libldap-common libltdl-dev libmail-sendmail-perl libnss-systemd librsvg2-common libsasl2-modules libxt-dev linux-sysctl-defaults lynx mesa-vulkan-drivers minimap ntpsec openntpd psmisc publicsuffix python3-gffutils python3-matplotlib rampler systemd-cryptsetup systemd-timesyncd wget xdg-user-dirs 0 packages upgraded, 249 newly installed, 0 to remove and 0 not upgraded. Need to get 268 MB of archives. After unpacking 901 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: spades (>= 3.14) which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: adwaita-icon-theme{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bcftools{a} bowtie2{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} java-common{a} java-wrappers{a} libapache-pom-java{a} libapparmor1{a} libarchive-zip-perl{a} libasound2-data{a} libasound2t64{a} libatk-bridge2.0-0t64{a} libatk1.0-0t64{a} libatspi2.0-0t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libcairo-gobject2{a} libcairo2{a} libcloudproviders0{a} libcolord2{a} libcom-err2{a} libcommons-compress-java{a} libcommons-jexl2-java{a} libcommons-lang-java{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2t64{a} libcurl3t64-gnutls{a} libdatrie1{a} libdbus-1-3{a} libdconf1{a} libdebhelper-perl{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libedlib1{a} libelf1t64{a} libepoxy0{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgtk-3-0t64{a} libgtk-3-common{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libhtsjdk-java{a} libicu72{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libllvm18{a} liblmdb0{a} libmagic-mgc{a} libmagic1t64{a} libmbedcrypto7t64{a} libmbedtls14t64{a} libmbedx509-1t64{a} libmjson-java{a} libncbi-ngs3{a} libncbi-vdb3{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngs-java{a} libngs-jni{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libnspr4{a} libnss3{a} libpam-systemd{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librhino-java{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libseqan2-dev{a} libsharpyuv0{a} libsnappy-java{a} libsnappy-jni{a} libsnappy1v5{a} libspoa7.0.0{a} libssh2-1t64{a} libsystemd-shared{a} libthai-data{a} libthai0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libvulkan1{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1{a} libwayland-server0{a} libwebp7{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxkbcommon0{a} libxml2{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxtst6{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} miniasm{a} ncbi-blast+{a} ncbi-data{a} ncbi-vdb-data{a} netbase{a} openjdk-21-jdk{a} openjdk-21-jdk-headless{a} openjdk-21-jre{a} openjdk-21-jre-headless{a} openssl{a} pilon{a} po-debconf{a} procps{a} python3{a} python3-all{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} racon{a} readline-common{a} samtools{a} scala-library{a} sensible-utils{a} shared-mime-info{a} systemd{a} systemd-sysv{a} tzdata{a} unzip{a} x11-common{a} xkb-data{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf at-spi2-core chrony curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libatk-wrapper-java-jni libgdk-pixbuf2.0-bin libglib2.0-data libgpm2 libgtk-3-bin libkmod2 libldap-common libltdl-dev libmail-sendmail-perl libnss-systemd librsvg2-common libsasl2-modules libxt-dev linux-sysctl-defaults lynx mesa-vulkan-drivers minimap ntpsec openntpd psmisc publicsuffix python3-gffutils python3-matplotlib rampler systemd-cryptsetup systemd-timesyncd wget xdg-user-dirs 0 packages upgraded, 249 newly installed, 0 to remove and 0 not upgraded. Need to get 268 MB of archives. After unpacking 901 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3228304 and its subdirectories Starting cleanup. All cleanup done. Sat Sep 28 09:38:51 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-97K9oNd8, removing. /srv/reproducible-results/rbuild-debian/r-b-build.BxyR2Gkn: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Sep 28 09:38 b1 drwxr-xr-x 2 jenkins jenkins 4096 Sep 28 09:38 b2 -rw------- 1 jenkins jenkins 3525 Sep 28 09:38 rbuildlog.k8mf6NW -rw-r--r-- 1 jenkins jenkins 2379 Dec 6 2022 unicycler_0.5.0+dfsg-1.dsc /srv/reproducible-results/rbuild-debian/r-b-build.BxyR2Gkn/b1: total 20 -rw-r--r-- 1 jenkins jenkins 16913 Sep 28 09:38 build.log /srv/reproducible-results/rbuild-debian/r-b-build.BxyR2Gkn/b2: total 0 Sat Sep 28 09:38:52 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Sep 27 21:38:34 -12 2024 I: pbuilder-time-stamp: 1727516314 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [unicycler_0.5.0+dfsg-1.dsc] I: copying [./unicycler_0.5.0+dfsg.orig.tar.xz] I: copying [./unicycler_0.5.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Dec 6 15:30:28 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./unicycler_0.5.0+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting unicycler in unicycler-0.5.0+dfsg dpkg-source: info: unpacking unicycler_0.5.0+dfsg.orig.tar.xz dpkg-source: info: unpacking unicycler_0.5.0+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spades.patch dpkg-source: info: applying install_wo_extra_steps.patch dpkg-source: info: applying append_flags I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3228304/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='ac8a39492ae74e8aa5a1e4f84b78f39e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3228304' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.BxyR2Gkn/pbuilderrc_Wvm5 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.BxyR2Gkn/b1 --logfile b1/build.log unicycler_0.5.0+dfsg-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3228304/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, default-jdk, bcftools, bowtie2, miniasm, ncbi-blast+, pilon, racon, samtools, spades (>= 3.14), libseqan2-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19900 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on default-jdk; however: Package default-jdk is not installed. pbuilder-satisfydepends-dummy depends on bcftools; however: Package bcftools is not installed. pbuilder-satisfydepends-dummy depends on bowtie2; however: Package bowtie2 is not installed. pbuilder-satisfydepends-dummy depends on miniasm; however: Package miniasm is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+; however: Package ncbi-blast+ is not installed. pbuilder-satisfydepends-dummy depends on pilon; however: Package pilon is not installed. pbuilder-satisfydepends-dummy depends on racon; however: Package racon is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on spades (>= 3.14); however: Package spades is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev; however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bcftools{a} bowtie2{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} java-common{a} java-wrappers{a} libapache-pom-java{a} libapparmor1{a} libarchive-zip-perl{a} libasound2-data{a} libasound2t64{a} libatk-bridge2.0-0t64{a} libatk1.0-0t64{a} libatspi2.0-0t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libcairo-gobject2{a} libcairo2{a} libcloudproviders0{a} libcolord2{a} libcom-err2{a} libcommons-compress-java{a} libcommons-jexl2-java{a} libcommons-lang-java{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2t64{a} libcurl3t64-gnutls{a} libdatrie1{a} libdbus-1-3{a} libdconf1{a} libdebhelper-perl{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libedlib1{a} libelf1t64{a} libepoxy0{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgtk-3-0t64{a} libgtk-3-common{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libhtsjdk-java{a} libicu72{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libllvm18{a} liblmdb0{a} libmagic-mgc{a} libmagic1t64{a} libmbedcrypto7t64{a} libmbedtls14t64{a} libmbedx509-1t64{a} libmjson-java{a} libncbi-ngs3{a} libncbi-vdb3{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngs-java{a} libngs-jni{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libnspr4{a} libnss3{a} libpam-systemd{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librhino-java{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libseqan2-dev{a} libsharpyuv0{a} libsnappy-java{a} libsnappy-jni{a} libsnappy1v5{a} libspoa7.0.0{a} libssh2-1t64{a} libsystemd-shared{a} libthai-data{a} libthai0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libvulkan1{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1{a} libwayland-server0{a} libwebp7{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxkbcommon0{a} libxml2{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxtst6{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} miniasm{a} ncbi-blast+{a} ncbi-data{a} ncbi-vdb-data{a} netbase{a} openjdk-21-jdk{a} openjdk-21-jdk-headless{a} openjdk-21-jre{a} openjdk-21-jre-headless{a} openssl{a} pilon{a} po-debconf{a} procps{a} python3{a} python3-all{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} racon{a} readline-common{a} samtools{a} scala-library{a} sensible-utils{a} shared-mime-info{a} systemd{a} systemd-sysv{a} tzdata{a} unzip{a} x11-common{a} xkb-data{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf at-spi2-core chrony curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libatk-wrapper-java-jni libgdk-pixbuf2.0-bin libglib2.0-data libgpm2 libgtk-3-bin libkmod2 libldap-common libltdl-dev libmail-sendmail-perl libnss-systemd librsvg2-common libsasl2-modules libxt-dev linux-sysctl-defaults lynx mesa-vulkan-drivers minimap ntpsec openntpd psmisc publicsuffix python3-gffutils python3-matplotlib rampler systemd-cryptsetup systemd-timesyncd wget xdg-user-dirs 0 packages upgraded, 249 newly installed, 0 to remove and 0 not upgraded. Need to get 268 MB of archives. After unpacking 901 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: spades (>= 3.14) which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: adwaita-icon-theme{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bcftools{a} bowtie2{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} java-common{a} java-wrappers{a} libapache-pom-java{a} libapparmor1{a} libarchive-zip-perl{a} libasound2-data{a} libasound2t64{a} libatk-bridge2.0-0t64{a} libatk1.0-0t64{a} libatspi2.0-0t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libcairo-gobject2{a} libcairo2{a} libcloudproviders0{a} libcolord2{a} libcom-err2{a} libcommons-compress-java{a} libcommons-jexl2-java{a} libcommons-lang-java{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2t64{a} libcurl3t64-gnutls{a} libdatrie1{a} libdbus-1-3{a} libdconf1{a} libdebhelper-perl{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libedlib1{a} libelf1t64{a} libepoxy0{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgtk-3-0t64{a} libgtk-3-common{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libhtsjdk-java{a} libicu72{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libllvm18{a} liblmdb0{a} libmagic-mgc{a} libmagic1t64{a} libmbedcrypto7t64{a} libmbedtls14t64{a} libmbedx509-1t64{a} libmjson-java{a} libncbi-ngs3{a} libncbi-vdb3{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngs-java{a} libngs-jni{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libnspr4{a} libnss3{a} libpam-systemd{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librhino-java{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libseqan2-dev{a} libsharpyuv0{a} libsnappy-java{a} libsnappy-jni{a} libsnappy1v5{a} libspoa7.0.0{a} libssh2-1t64{a} libsystemd-shared{a} libthai-data{a} libthai0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libvulkan1{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1{a} libwayland-server0{a} libwebp7{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxkbcommon0{a} libxml2{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxtst6{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} miniasm{a} ncbi-blast+{a} ncbi-data{a} ncbi-vdb-data{a} netbase{a} openjdk-21-jdk{a} openjdk-21-jdk-headless{a} openjdk-21-jre{a} openjdk-21-jre-headless{a} openssl{a} pilon{a} po-debconf{a} procps{a} python3{a} python3-all{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} racon{a} readline-common{a} samtools{a} scala-library{a} sensible-utils{a} shared-mime-info{a} systemd{a} systemd-sysv{a} tzdata{a} unzip{a} x11-common{a} xkb-data{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf at-spi2-core chrony curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libatk-wrapper-java-jni libgdk-pixbuf2.0-bin libglib2.0-data libgpm2 libgtk-3-bin libkmod2 libldap-common libltdl-dev libmail-sendmail-perl libnss-systemd librsvg2-common libsasl2-modules libxt-dev linux-sysctl-defaults lynx mesa-vulkan-drivers minimap ntpsec openntpd psmisc publicsuffix python3-gffutils python3-matplotlib rampler systemd-cryptsetup systemd-timesyncd wget xdg-user-dirs 0 packages upgraded, 249 newly installed, 0 to remove and 0 not upgraded. Need to get 268 MB of archives. After unpacking 901 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3228304 and its subdirectories unicycler failed to build from source. removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/unicycler_0.5.0+dfsg-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/unicycler_0.5.0+dfsg-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/unicycler_0.5.0+dfsg-1.build1.log.gz' Sat Sep 28 09:38:53 UTC 2024 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 74.4% -- replaced with stdout Sat Sep 28 09:38:53 UTC 2024 W: Downloading the build dependencies failed Sat Sep 28 09:38:53 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Sat Sep 28 09:38:53 UTC 2024 W: Network problems are automatically rescheduled after some hours. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-09-28 09:38:54] INFO: Starting at 2024-09-28 09:38:54.223318 [2024-09-28 09:38:54] INFO: Generating the pages of 1 package(s) [2024-09-28 09:38:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-09-28 09:38:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-09-28 09:38:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-09-28 09:38:55] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/arm64/unicycler didn't produce a buildlog, even though it has been built. [2024-09-28 09:38:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-09-28 09:38:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-09-28 09:38:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/arm64/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-09-28 09:38:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-09-28 09:38:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-09-28 09:38:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/unicycler_0.4.8+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/unicycler_0.4.8+dfsg-2.diff.gz is missing [2024-09-28 09:38:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/unicycler_0.4.8+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/unicycler_0.4.8+dfsg-2.diff.gz is missing [2024-09-28 09:38:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/unicycler_0.4.8+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/unicycler_0.4.8+dfsg-2.diff.gz is missing [2024-09-28 09:38:55] INFO: Finished at 2024-09-28 09:38:55.745869, took: 0:00:01.522558 Sat Sep 28 09:38:55 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/arm64/unicycler.html Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/unicycler_0.5.0+dfsg-1.rbuild.log: 70.2% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/unicycler_0.5.0+dfsg-1.rbuild.log.gz [2024-09-28 09:38:56] INFO: Starting at 2024-09-28 09:38:56.172574 [2024-09-28 09:38:56] INFO: Generating the pages of 1 package(s) [2024-09-28 09:38:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-09-28 09:38:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-09-28 09:38:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-09-28 09:38:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-09-28 09:38:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-09-28 09:38:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-09-28 09:38:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/arm64/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-09-28 09:38:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-09-28 09:38:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-09-28 09:38:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/unicycler_0.4.8+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/unicycler_0.4.8+dfsg-2.diff.gz is missing [2024-09-28 09:38:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/unicycler_0.4.8+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/unicycler_0.4.8+dfsg-2.diff.gz is missing [2024-09-28 09:38:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/unicycler_0.4.8+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/unicycler_0.4.8+dfsg-2.diff.gz is missing [2024-09-28 09:38:57] INFO: Finished at 2024-09-28 09:38:57.560530, took: 0:00:01.387961 All cleanup done. Sat Sep 28 09:38:57 UTC 2024 - total duration: 0h 0m 31s. Sat Sep 28 09:38:57 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-6daib1xm, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 35.367s CPU time consumed: 7.378s