Running as unit: rb-build-arm64_7-41758.service ==================================================================================== Sun Oct 27 05:46:17 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_7) on jenkins, called using "codethink02-arm64 codethink03-arm64" as arguments. Sun Oct 27 05:46:17 UTC 2024 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-dLT2vTyC" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Oct 27 05:46:17 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink02-arm64.debian.net is marked as down. Sun Oct 27 05:46:17 UTC 2024 - checking via ssh if codethink02-arm64.debian.net is up. removed '/tmp/read-only-fs-test-Xd3WV1' Sun Oct 27 05:46:18 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Sun Oct 27 05:46:18 UTC 2024 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-urM1bX' ok, let's check if python-bioframe is building anywhere yet… ok, python-bioframe is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of python-bioframe in unstable on arm64 on jenkins now. 1st build will be done on codethink02-arm64.debian.net. 2nd build will be done on codethink03-arm64.debian.net. ============================================================================= Sun Oct 27 05:46:29 UTC 2024 I: starting to build python-bioframe/unstable/arm64 on jenkins on '2024-10-27 05:46' Sun Oct 27 05:46:29 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_7/41758/console.log 1730007989 arm64 unstable python-bioframe Sun Oct 27 05:46:29 UTC 2024 I: Downloading source for unstable/python-bioframe=0.4.1-1 --2024-10-27 05:46:30-- http://deb.debian.org/debian/pool/main/p/python-bioframe/python-bioframe_0.4.1-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1611 (1.6K) [text/prs.lines.tag] Saving to: ‘python-bioframe_0.4.1-1.dsc’ 0K . 100% 124M=0s 2024-10-27 05:46:30 (124 MB/s) - ‘python-bioframe_0.4.1-1.dsc’ saved [1611/1611] --2024-10-27 05:46:30-- http://deb.debian.org/debian/pool/main/p/python-bioframe/python-bioframe_0.4.1-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1611 (1.6K) [text/prs.lines.tag] Saving to: ‘python-bioframe_0.4.1-1.dsc’ 0K . 100% 124M=0s 2024-10-27 05:46:30 (124 MB/s) - ‘python-bioframe_0.4.1-1.dsc’ saved [1611/1611] Sun Oct 27 05:46:30 UTC 2024 I: python-bioframe_0.4.1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: python-bioframe Binary: python3-bioframe Architecture: all Version: 0.4.1-1 Maintainer: Debian Med Packaging Team Uploaders: Nilesh Patra Homepage: https://github.com/open2c/bioframe Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/python-bioframe Vcs-Git: https://salsa.debian.org/med-team/python-bioframe.git Testsuite: autopkgtest Testsuite-Triggers: python3-all, python3-pytest Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-matplotlib, python3-numpy, python3-pandas, python3-pytest , python3-requests, python3-setuptools, python3-wheel Package-List: python3-bioframe deb science optional arch=all Checksums-Sha1: e776d6f6c526de088e69795b66ac6dda9d64ff4d 815763 python-bioframe_0.4.1.orig.tar.gz c303cf255be12ae8f66def13658dcbb0f804bcf7 3464 python-bioframe_0.4.1-1.debian.tar.xz Checksums-Sha256: 46317c8b663065ba84f18f64e14c9f6c58defdfa649aedf155a31435d0a0f710 815763 python-bioframe_0.4.1.orig.tar.gz 6af9f18a40ee672e73ed9ec33f8482726989462ac003e1f833788cd097bb3b90 3464 python-bioframe_0.4.1-1.debian.tar.xz Files: 55755babf1289bb7bdd5538e2bcced10 815763 python-bioframe_0.4.1.orig.tar.gz 48f7be0ca3328fe197c66b844455066d 3464 python-bioframe_0.4.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iHUEARYIAB0WIQSglbZu4JAkvuai8HIqJ5BL1yQ+2gUCZIdcIgAKCRAqJ5BL1yQ+ 2uypAQCD2zEicNks+2k3d3tQqNPxrNkVrhDo0r6y8kXGsMJCUQD7B8Y4cp2Gh8mL 0cNfd47RRhybDTEfp/8T2bMSZIqZ8gc= =2Gk0 -----END PGP SIGNATURE----- Sun Oct 27 05:46:30 UTC 2024 I: Checking whether the package is not for us Sun Oct 27 05:46:30 UTC 2024 I: Starting 1st build on remote node codethink02-arm64.debian.net. Sun Oct 27 05:46:30 UTC 2024 I: Preparing to do remote build '1' on codethink02-arm64.debian.net. Sun Oct 27 05:46:30 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink02-arm64.debian.net is marked as down. Sun Oct 27 05:46:30 UTC 2024 - checking via ssh if codethink02-arm64.debian.net is up. removed '/tmp/read-only-fs-test-Wu1esI' ==================================================================================== Sun Oct 27 05:46:32 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink02-arm64, called using "1 python-bioframe unstable /srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba 0.4.1-1" as arguments. Sun Oct 27 05:46:32 UTC 2024 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-LsVCRGGP" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Oct 27 05:46:32 UTC 2024 I: Downloading source for unstable/python-bioframe=0.4.1-1 Reading package lists... NOTICE: 'python-bioframe' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-bioframe.git Please use: git clone https://salsa.debian.org/med-team/python-bioframe.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 821 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main python-bioframe 0.4.1-1 (dsc) [1611 B] Get:2 http://deb.debian.org/debian unstable/main python-bioframe 0.4.1-1 (tar) [816 kB] Get:3 http://deb.debian.org/debian unstable/main python-bioframe 0.4.1-1 (diff) [3464 B] Fetched 821 kB in 0s (31.6 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'python-bioframe' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-bioframe.git Please use: git clone https://salsa.debian.org/med-team/python-bioframe.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 821 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main python-bioframe 0.4.1-1 (dsc) [1611 B] Get:2 http://deb.debian.org/debian unstable/main python-bioframe 0.4.1-1 (tar) [816 kB] Get:3 http://deb.debian.org/debian unstable/main python-bioframe 0.4.1-1 (diff) [3464 B] Fetched 821 kB in 0s (31.6 MB/s) Download complete and in download only mode ============================================================================= Building python-bioframe in unstable on arm64 on codethink02-arm64 now. Date: Sun Oct 27 05:46:32 GMT 2024 Date UTC: Sun Oct 27 05:46:32 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sat Oct 26 17:46:32 -12 2024 I: pbuilder-time-stamp: 1730007992 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-bioframe_0.4.1-1.dsc] I: copying [./python-bioframe_0.4.1.orig.tar.gz] I: copying [./python-bioframe_0.4.1-1.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Jun 12 17:55:46 2023 gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-bioframe_0.4.1-1.dsc: no acceptable signature found dpkg-source: info: extracting python-bioframe in python-bioframe-0.4.1 dpkg-source: info: unpacking python-bioframe_0.4.1.orig.tar.gz dpkg-source: info: unpacking python-bioframe_0.4.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 32-bits.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1731319/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='92638fd1ba3b4a9e97a9fb2b4da7fa4c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1731319' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba/pbuilderrc_wou2 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba/b1 --logfile b1/build.log python-bioframe_0.4.1-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1731319/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-matplotlib, python3-numpy, python3-pandas, python3-pytest, python3-requests, python3-setuptools, python3-wheel dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20056 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-wheel; however: Package python3-wheel is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtcl8.6{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-appdirs{a} python3-attr{a} python3-autocommand{a} python3-brotli{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-fonttools{a} python3-fs{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyparsing{a} python3-pytest{a} python3-requests{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-sympy{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-urllib3{a} python3-wheel{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.12-tk{a} python3.13-tk{a} readline-common{a} sensible-utils{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx python3-bottleneck python3-bs4 python3-cssselect python3-html5lib python3-jinja2 python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pygments python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 154 newly installed, 0 to remove and 0 not upgraded. Need to get 95.1 MB of archives. After unpacking 415 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.12-minimal arm64 3.12.7-1 [807 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.3-1 [90.2 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.12-minimal arm64 3.12.7-1 [1941 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.1-1 [22.8 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 12 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3 [78.4 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libnsl2 arm64 1.3.0-3+b2 [37.7 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libpython3.12-stdlib arm64 3.12.7-1 [1901 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 python3.12 arm64 3.12.7-1 [671 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.3.2-1 [1348 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20240203 [158 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-9 [96.6 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libtcl8.6 arm64 8.6.15+dfsg-2 [982 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b4 [292 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.44-2 [273 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-1.1 [317 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-1.1 [385 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.9-1+b1 [18.1 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.2-3+b1 [24.3 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2 [143 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.7-1 [328 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.7-1+b1 [775 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.10-1.1+b1 [27.0 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libxft2 arm64 2.3.6-1+b1 [51.0 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+23.1 [216 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libxss1 arm64 1:1.2.3-1+b1 [17.0 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libtk8.6 arm64 8.6.15-1 [738 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7 [533 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 blt arm64 2.5.3+dfsg-7 [6024 B] Get: 61 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 67 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.1 [630 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.3.0-1 [36.5 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 81 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.20.2-1 [10.3 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 75.2.0-1 [731 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20241024 [109 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 fonts-lyx all 2.4.2.1-1 [190 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.0-3 [91.7 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.15-1 [71.8 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 14.2.0-7 [361 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.82.2-2 [1409 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-2 [69.2 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 10.0.1-1 [441 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libimagequant0 arm64 2.18.0-1+b1 [34.6 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b1 [30.4 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3 [172 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.0-3 [1757 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b1 [25.0 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-4+b1 [142 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libopenjp2-7 arm64 2.5.0-2+b3 [177 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libqhull-r8.0 arm64 2020.2-6+b1 [226 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libraqm0 arm64 0.10.1-1+b1 [13.7 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [111 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.4.0-0.1 [267 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libwebpdemux2 arm64 1.4.0-0.1 [110 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libwebpmux3 arm64 1.4.0-0.1 [122 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libxslt1.1 arm64 1.1.35-1.1 [221 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 python-matplotlib-data all 3.8.3-3 [2731 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 python3-all arm64 3.12.6-1 [1040 B] Get: 115 http://deb.debian.org/debian unstable/main arm64 python3-appdirs all 1.4.4-4 [12.5 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 python3-attr all 24.2.0-1 [68.4 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 python3-brotli arm64 1.1.0-2+b4 [301 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 119 http://deb.debian.org/debian unstable/main arm64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 python3-charset-normalizer arm64 3.4.0-1 [112 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 python3-numpy arm64 1:1.26.4+ds-11 [3351 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 python3-contourpy arm64 1.3.0-2 [191 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 python3-cycler all 0.12.1-1 [9496 B] Get: 124 http://deb.debian.org/debian unstable/main arm64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 python3-tz all 2024.1-2 [30.9 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 python3-six all 1.16.0-7 [16.4 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 python3-fs all 2.4.16-4 [95.4 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 python3-lxml arm64 5.3.0-1 [1096 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 python3-lz4 arm64 4.0.2+dfsg-1+b4 [25.1 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 python3-scipy arm64 1.13.1-5 [15.4 MB] Get: 132 http://deb.debian.org/debian unstable/main arm64 python3-mpmath all 1.3.0-1 [419 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 python3-sympy all 1.13.3-1 [4147 kB] Get: 134 http://deb.debian.org/debian unstable/main arm64 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get: 135 http://deb.debian.org/debian unstable/main arm64 unicode-data all 15.1.0-1 [8547 kB] Get: 136 http://deb.debian.org/debian unstable/main arm64 python3-fonttools arm64 4.54.1-4 [1356 kB] Get: 137 http://deb.debian.org/debian unstable/main arm64 python3-idna all 3.8-2 [41.6 kB] Get: 138 http://deb.debian.org/debian unstable/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 139 http://deb.debian.org/debian unstable/main arm64 python3-kiwisolver arm64 1.4.7-2 [56.7 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 python3-pil arm64 10.4.0-1 [480 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 python3.12-tk arm64 3.12.7-1 [110 kB] Get: 142 http://deb.debian.org/debian unstable/main arm64 python3.13-tk arm64 3.13.0-1 [101 kB] Get: 143 http://deb.debian.org/debian unstable/main arm64 python3-tk arm64 3.12.6-1 [9428 B] Get: 144 http://deb.debian.org/debian unstable/main arm64 python3-pil.imagetk arm64 10.4.0-1 [79.4 kB] Get: 145 http://deb.debian.org/debian unstable/main arm64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 146 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 24.1-1 [45.8 kB] Get: 147 http://deb.debian.org/debian unstable/main arm64 python3-matplotlib arm64 3.8.3-3 [5509 kB] Get: 148 http://deb.debian.org/debian unstable/main arm64 python3-pandas-lib arm64 2.2.3+dfsg-4 [3746 kB] Get: 149 http://deb.debian.org/debian unstable/main arm64 python3-pandas all 2.2.3+dfsg-4 [3096 kB] Get: 150 http://deb.debian.org/debian unstable/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 151 http://deb.debian.org/debian unstable/main arm64 python3-pytest all 8.3.3-1 [249 kB] Get: 152 http://deb.debian.org/debian unstable/main arm64 python3-urllib3 all 2.0.7-2 [111 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 154 http://deb.debian.org/debian unstable/main arm64 python3-wheel all 0.44.0-2 [53.4 kB] Fetched 95.1 MB in 1s (131 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20056 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-1_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.7-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-1_arm64.deb ... Unpacking python3.12-minimal (3.12.7-1) ... Setting up libpython3.12-minimal:arm64 (3.12.7-1) ... Setting up libexpat1:arm64 (2.6.3-1) ... Setting up python3.12-minimal (3.12.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20376 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_arm64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../05-libcom-err2_1.47.1-1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../12-libnsl2_1.3.0-3+b2_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../14-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-1_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.7-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-1_arm64.deb ... Unpacking python3.12 (3.12.7-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21436 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.6-1_arm64.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.3.2-1_arm64.deb ... Unpacking openssl (3.3.2-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../008-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40.2-9_arm64.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../011-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../013-m4_1.4.19-4_arm64.deb ... 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Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up fonts-lyx (2.4.2.1-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:arm64 (1.1.0-2+b4) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libdeflate0:arm64 (1.22-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libqhull-r8.0:arm64 (2020.2-6+b1) ... Setting up libcom-err2:arm64 (1.47.1-1) ... Setting up file (1:5.45-3) ... Setting up libjbig0:arm64 (2.1-6.1+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Oct 27 05:46:59 UTC 2024. Universal Time is now: Sun Oct 27 05:46:59 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:arm64 (2.82.2-2) ... No schema files found: doing nothing. Setting up libblas3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libjpeg62-turbo:arm64 (1:2.1.5-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libfribidi0:arm64 (1.0.15-1) ... Setting up libimagequant0:arm64 (2.18.0-1+b1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:arm64 (1.6.44-2) ... Setting up libtcl8.6:arm64 (8.6.15+dfsg-2) ... Setting up autopoint (0.22.5-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up libgfortran5:arm64 (14.2.0-7) ... Setting up autoconf (2.72-3) ... Setting up libwebp7:arm64 (1.4.0-0.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:arm64 (4.5.1+git230720-5) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libopenjp2-7:arm64 (2.5.0-2+b3) ... Setting up libx11-6:arm64 (2:1.8.7-1+b1) ... Setting up netbase (6.4) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up python-matplotlib-data (3.8.3-3) ... Setting up openssl (3.3.2-1) ... Setting up libwebpmux3:arm64 (1.4.0-0.1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.22.5-2) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b1) ... Setting up libtool (2.4.7-7) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libwebpdemux2:arm64 (1.4.0-0.1) ... Setting up libxext6:arm64 (2:1.3.4-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libreadline8t64:arm64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libxslt1.1:arm64 (1.1.35-1.1) ... Setting up libharfbuzz0b:arm64 (10.0.1-1) ... Setting up libxss1:arm64 (1:1.2.3-1+b1) ... Setting up libfontconfig1:arm64 (2.15.0-1.1) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1+b1) ... Setting up libxft2:arm64 (2.3.6-1+b1) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:arm64 (8.6.15-1) ... Setting up python3.12-tk (3.12.7-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3.13-tk (3.13.0-1) ... Setting up libraqm0:arm64 (0.10.1-1+b1) ... Setting up libnsl2:arm64 (1.3.0-3+b2) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up libpython3.12-stdlib:arm64 (3.12.7-1) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3.12 (3.12.7-1) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:arm64 (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up python3-zipp (3.20.2-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-wheel (0.44.0-2) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-7) ... Setting up python3-pil:arm64 (10.4.0-1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.1-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2024.8.30+dfsg-1) ... Setting up python3-brotli (1.1.0-2+b4) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.7-2) ... Setting up python3-idna (3.8-2) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-urllib3 (2.0.7-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-lxml:arm64 (5.3.0-1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.13.3-1) ... Setting up python3-attr (24.2.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-lz4 (4.0.2+dfsg-1+b4) ... Setting up python3-charset-normalizer (3.4.0-1) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-typeguard (4.3.0-1) ... Setting up python3-all (3.12.6-1) ... Setting up python3-tk:arm64 (3.12.6-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pil.imagetk:arm64 (10.4.0-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up python3-fs (2.4.16-4) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-11) ... Setting up python3-contourpy (1.3.0-2) ... Setting up dh-python (6.20241024) ... Setting up python3-scipy (1.13.1-5) ... Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-4) ... Setting up python3-pandas (2.2.3+dfsg-4) ... Setting up python3-fonttools (4.54.1-4) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up python3-matplotlib (3.8.3-3) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-bioframe-0.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-bioframe_0.4.1-1_source.changes dpkg-buildpackage: info: source package python-bioframe dpkg-buildpackage: info: source version 0.4.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running clean removing '/build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running build running build_py creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe copying bioframe/extras.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe copying bioframe/ops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe copying bioframe/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe copying bioframe/_version.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe copying bioframe/vis.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core copying bioframe/core/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core copying bioframe/core/arrops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core copying bioframe/core/checks.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core copying bioframe/core/construction.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core copying bioframe/core/specs.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core copying bioframe/core/stringops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io copying bioframe/io/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io copying bioframe/io/fileops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io copying bioframe/io/resources.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io copying bioframe/io/schemas.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/GRCh37.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/ce10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/ce11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/danRer10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/danRer11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/dm3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/dm6.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/hg19.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/hg38.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/mm10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/mm39.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/mm9.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/sacCer3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/t2t-chm13-v1.0.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/t2t-chm13-v1.1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/wuhCor1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build; python3.12 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 rootdir: /build/reproducible-path/python-bioframe-0.4.1 plugins: typeguard-4.3.0 collected 50 items tests/test_core_checks.py ........ [ 16%] tests/test_core_construction.py .... [ 24%] tests/test_core_specs.py ..... [ 34%] tests/test_core_stringops.py .... [ 42%] tests/test_extras.py ..sss.. [ 56%] tests/test_io.py .. [ 60%] tests/test_ops.py ............. [ 86%] tests/test_ops_select.py ....... [100%] =============================== warnings summary =============================== bioframe/io/resources.py:13 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/resources.py:13: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources tests/test_io.py:23 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_io.py:23: SyntaxWarning: invalid escape sequence '\s' assert bioframe.read_table(StringIO(d), schema="bed3", sep="\s+").shape == (3, 3) tests/test_io.py:24 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_io.py:24: SyntaxWarning: invalid escape sequence '\s' assert bioframe.read_table(StringIO(d), schema="bed6", sep="\s+").shape == (3, 6) tests/test_io.py:25 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_io.py:25: SyntaxWarning: invalid escape sequence '\s' assert bioframe.read_table(StringIO(d), schema="bed12", sep="\s+").shape == (3, 12) tests/test_io.py:33 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_io.py:33: SyntaxWarning: invalid escape sequence '\s' StringIO(d), schema="bedpe", sep="\s+", schema_is_strict=True .pybuild/cpython3_3.12_python-bioframe/build/tests/test_core_checks.py: 84 warnings .pybuild/cpython3_3.12_python-bioframe/build/tests/test_core_construction.py: 28 warnings .pybuild/cpython3_3.12_python-bioframe/build/tests/test_core_specs.py: 12 warnings .pybuild/cpython3_3.12_python-bioframe/build/tests/test_extras.py: 24 warnings .pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py: 326 warnings /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/specs.py:150: DeprecationWarning: is_categorical_dtype is deprecated and will be removed in a future version. Use isinstance(dtype, pd.CategoricalDtype) instead pd.api.types.is_categorical_dtype(chrom_dtype), .pybuild/cpython3_3.12_python-bioframe/build/tests/test_core_checks.py: 4 warnings .pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py: 6 warnings /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/ops.py:1550: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method. The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy. For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object. df_trimmed[sk].clip(lower=lower_vector, upper=upper_vector, inplace=True) .pybuild/cpython3_3.12_python-bioframe/build/tests/test_core_checks.py: 4 warnings .pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py: 6 warnings /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/ops.py:1551: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method. The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy. For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object. df_trimmed[ek].clip(lower=lower_vector, upper=upper_vector, inplace=True) .pybuild/cpython3_3.12_python-bioframe/build/tests/test_core_construction.py::test_any /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/construction.py:154: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method. The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy. For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object. out_df[sk1].fillna(0, inplace=True) .pybuild/cpython3_3.12_python-bioframe/build/tests/test_core_construction.py::test_any /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/construction.py:154: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` out_df[sk1].fillna(0, inplace=True) .pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py::test_trim /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py:210: FutureWarning: Mismatched null-like values and None found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise. pd.testing.assert_frame_equal( .pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py::test_overlap /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py:442: DeprecationWarning: Bitwise inversion '~' on bool is deprecated and will be removed in Python 3.16. This returns the bitwise inversion of the underlying int object and is usually not what you expect from negating a bool. Use the 'not' operator for boolean negation or ~int(x) if you really want the bitwise inversion of the underlying int. assert ~df1.equals( .pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py::test_assign_view /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py:1632: FutureWarning: Mismatched null-like values and None found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise. pd.testing.assert_frame_equal( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================= 47 passed, 3 skipped, 504 warnings in 4.39s ================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-bioframe/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/__pycache__/vis.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/__pycache__/extras.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/__pycache__/ops.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/__pycache__/_version.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__pycache__ creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/__pycache__/resources.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/__pycache__/fileops.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/__pycache__/schemas.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/__pycache__ creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/wuhCor1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/t2t-chm13-v1.1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/t2t-chm13-v1.0.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/sacCer3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/mm9.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/mm39.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/mm10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/hg38.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/hg19.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/dm6.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/dm3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/danRer11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/danRer10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/ce11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/ce10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/GRCh37.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/schemas.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/resources.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/fileops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__pycache__/construction.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__pycache__/checks.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__pycache__/stringops.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__pycache__/specs.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__pycache__/arrops.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/stringops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/specs.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/construction.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/checks.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/arrops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/vis.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/_version.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/ops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/extras.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/schemas.py to schemas.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/resources.py to resources.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/fileops.py to fileops.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/stringops.py to stringops.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/specs.py to specs.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/construction.py to construction.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/checks.py to checks.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/arrops.py to arrops.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/vis.py to vis.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/_version.py to _version.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/ops.py to ops.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/extras.py to extras.cpython-312.pyc running install_egg_info running egg_info creating bioframe.egg-info writing bioframe.egg-info/PKG-INFO writing dependency_links to bioframe.egg-info/dependency_links.txt writing requirements to bioframe.egg-info/requires.txt writing top-level names to bioframe.egg-info/top_level.txt writing manifest file 'bioframe.egg-info/SOURCES.txt' reading manifest file 'bioframe.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '__pycache__/*' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.pyd' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.git*' found anywhere in distribution warning: no previously-included files matching '.deps/*' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'bioframe.egg-info/SOURCES.txt' Copying bioframe.egg-info to /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe-0.4.1.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-bioframe: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-bioframe' in '../python3-bioframe_0.4.1-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-bioframe_0.4.1-1_arm64.buildinfo dpkg-genchanges --build=binary -O../python-bioframe_0.4.1-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1731319 and its subdirectories I: Current time: Sat Oct 26 17:47:54 -12 2024 I: pbuilder-time-stamp: 1730008074 Sun Oct 27 05:47:54 UTC 2024 I: Signing ./b1/python-bioframe_0.4.1-1_arm64.buildinfo as python-bioframe_0.4.1-1_arm64.buildinfo.asc Sun Oct 27 05:47:54 UTC 2024 I: Signed ./b1/python-bioframe_0.4.1-1_arm64.buildinfo as ./b1/python-bioframe_0.4.1-1_arm64.buildinfo.asc Sun Oct 27 05:47:54 UTC 2024 - build #1 for python-bioframe/unstable/arm64 on codethink02-arm64 done. Starting cleanup. All cleanup done. Sun Oct 27 05:47:54 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-LsVCRGGP, removing. /srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Oct 27 05:47 b1 drwxr-xr-x 2 jenkins jenkins 4096 Oct 27 05:46 b2 -rw-r--r-- 1 jenkins jenkins 1611 Jun 12 2023 python-bioframe_0.4.1-1.dsc -rw------- 1 jenkins jenkins 2776 Oct 27 05:46 rbuildlog.4lizEcv /srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba/b1: total 1020 -rw-r--r-- 1 jenkins jenkins 96987 Oct 27 05:47 build.log -rw-r--r-- 1 jenkins jenkins 3464 Oct 27 05:47 python-bioframe_0.4.1-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1611 Oct 27 05:47 python-bioframe_0.4.1-1.dsc -rw-r--r-- 1 jenkins jenkins 8576 Oct 27 05:47 python-bioframe_0.4.1-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 9458 Oct 27 05:47 python-bioframe_0.4.1-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1132 Oct 27 05:47 python-bioframe_0.4.1-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 1563 Oct 27 05:47 python-bioframe_0.4.1-1_source.changes -rw-r--r-- 1 jenkins jenkins 815763 Oct 27 05:47 python-bioframe_0.4.1.orig.tar.gz -rw-r--r-- 1 jenkins jenkins 71588 Oct 27 05:47 python3-bioframe_0.4.1-1_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba/b2: total 0 Sun Oct 27 05:47:56 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Oct 26 17:46:32 -12 2024 I: pbuilder-time-stamp: 1730007992 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-bioframe_0.4.1-1.dsc] I: copying [./python-bioframe_0.4.1.orig.tar.gz] I: copying [./python-bioframe_0.4.1-1.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Jun 12 17:55:46 2023 gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-bioframe_0.4.1-1.dsc: no acceptable signature found dpkg-source: info: extracting python-bioframe in python-bioframe-0.4.1 dpkg-source: info: unpacking python-bioframe_0.4.1.orig.tar.gz dpkg-source: info: unpacking python-bioframe_0.4.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 32-bits.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1731319/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='92638fd1ba3b4a9e97a9fb2b4da7fa4c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1731319' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba/pbuilderrc_wou2 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba/b1 --logfile b1/build.log python-bioframe_0.4.1-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1731319/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-matplotlib, python3-numpy, python3-pandas, python3-pytest, python3-requests, python3-setuptools, python3-wheel dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20056 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-wheel; however: Package python3-wheel is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtcl8.6{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-appdirs{a} python3-attr{a} python3-autocommand{a} python3-brotli{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-fonttools{a} python3-fs{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyparsing{a} python3-pytest{a} python3-requests{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-sympy{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-urllib3{a} python3-wheel{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.12-tk{a} python3.13-tk{a} readline-common{a} sensible-utils{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx python3-bottleneck python3-bs4 python3-cssselect python3-html5lib python3-jinja2 python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pygments python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 154 newly installed, 0 to remove and 0 not upgraded. Need to get 95.1 MB of archives. After unpacking 415 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.12-minimal arm64 3.12.7-1 [807 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.3-1 [90.2 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.12-minimal arm64 3.12.7-1 [1941 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.1-1 [22.8 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 12 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3 [78.4 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libnsl2 arm64 1.3.0-3+b2 [37.7 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libpython3.12-stdlib arm64 3.12.7-1 [1901 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 python3.12 arm64 3.12.7-1 [671 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.3.2-1 [1348 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20240203 [158 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-9 [96.6 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libtcl8.6 arm64 8.6.15+dfsg-2 [982 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b4 [292 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.44-2 [273 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-1.1 [317 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-1.1 [385 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.9-1+b1 [18.1 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.2-3+b1 [24.3 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2 [143 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.7-1 [328 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.7-1+b1 [775 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.10-1.1+b1 [27.0 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libxft2 arm64 2.3.6-1+b1 [51.0 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+23.1 [216 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libxss1 arm64 1:1.2.3-1+b1 [17.0 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libtk8.6 arm64 8.6.15-1 [738 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7 [533 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 blt arm64 2.5.3+dfsg-7 [6024 B] Get: 61 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 67 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.1 [630 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.3.0-1 [36.5 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 81 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.20.2-1 [10.3 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 75.2.0-1 [731 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20241024 [109 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 fonts-lyx all 2.4.2.1-1 [190 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.0-3 [91.7 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.15-1 [71.8 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 14.2.0-7 [361 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.82.2-2 [1409 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-2 [69.2 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 10.0.1-1 [441 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libimagequant0 arm64 2.18.0-1+b1 [34.6 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b1 [30.4 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3 [172 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.0-3 [1757 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b1 [25.0 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-4+b1 [142 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libopenjp2-7 arm64 2.5.0-2+b3 [177 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libqhull-r8.0 arm64 2020.2-6+b1 [226 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libraqm0 arm64 0.10.1-1+b1 [13.7 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [111 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.4.0-0.1 [267 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libwebpdemux2 arm64 1.4.0-0.1 [110 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libwebpmux3 arm64 1.4.0-0.1 [122 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libxslt1.1 arm64 1.1.35-1.1 [221 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 python-matplotlib-data all 3.8.3-3 [2731 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 python3-all arm64 3.12.6-1 [1040 B] Get: 115 http://deb.debian.org/debian unstable/main arm64 python3-appdirs all 1.4.4-4 [12.5 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 python3-attr all 24.2.0-1 [68.4 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 python3-brotli arm64 1.1.0-2+b4 [301 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 119 http://deb.debian.org/debian unstable/main arm64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 python3-charset-normalizer arm64 3.4.0-1 [112 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 python3-numpy arm64 1:1.26.4+ds-11 [3351 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 python3-contourpy arm64 1.3.0-2 [191 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 python3-cycler all 0.12.1-1 [9496 B] Get: 124 http://deb.debian.org/debian unstable/main arm64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 python3-tz all 2024.1-2 [30.9 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 python3-six all 1.16.0-7 [16.4 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 python3-fs all 2.4.16-4 [95.4 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 python3-lxml arm64 5.3.0-1 [1096 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 python3-lz4 arm64 4.0.2+dfsg-1+b4 [25.1 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 python3-scipy arm64 1.13.1-5 [15.4 MB] Get: 132 http://deb.debian.org/debian unstable/main arm64 python3-mpmath all 1.3.0-1 [419 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 python3-sympy all 1.13.3-1 [4147 kB] Get: 134 http://deb.debian.org/debian unstable/main arm64 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get: 135 http://deb.debian.org/debian unstable/main arm64 unicode-data all 15.1.0-1 [8547 kB] Get: 136 http://deb.debian.org/debian unstable/main arm64 python3-fonttools arm64 4.54.1-4 [1356 kB] Get: 137 http://deb.debian.org/debian unstable/main arm64 python3-idna all 3.8-2 [41.6 kB] Get: 138 http://deb.debian.org/debian unstable/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 139 http://deb.debian.org/debian unstable/main arm64 python3-kiwisolver arm64 1.4.7-2 [56.7 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 python3-pil arm64 10.4.0-1 [480 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 python3.12-tk arm64 3.12.7-1 [110 kB] Get: 142 http://deb.debian.org/debian unstable/main arm64 python3.13-tk arm64 3.13.0-1 [101 kB] Get: 143 http://deb.debian.org/debian unstable/main arm64 python3-tk arm64 3.12.6-1 [9428 B] Get: 144 http://deb.debian.org/debian unstable/main arm64 python3-pil.imagetk arm64 10.4.0-1 [79.4 kB] Get: 145 http://deb.debian.org/debian unstable/main arm64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 146 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 24.1-1 [45.8 kB] Get: 147 http://deb.debian.org/debian unstable/main arm64 python3-matplotlib arm64 3.8.3-3 [5509 kB] Get: 148 http://deb.debian.org/debian unstable/main arm64 python3-pandas-lib arm64 2.2.3+dfsg-4 [3746 kB] Get: 149 http://deb.debian.org/debian unstable/main arm64 python3-pandas all 2.2.3+dfsg-4 [3096 kB] Get: 150 http://deb.debian.org/debian unstable/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 151 http://deb.debian.org/debian unstable/main arm64 python3-pytest all 8.3.3-1 [249 kB] Get: 152 http://deb.debian.org/debian unstable/main arm64 python3-urllib3 all 2.0.7-2 [111 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 154 http://deb.debian.org/debian unstable/main arm64 python3-wheel all 0.44.0-2 [53.4 kB] Fetched 95.1 MB in 1s (131 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20056 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-1_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.7-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-1_arm64.deb ... Unpacking python3.12-minimal (3.12.7-1) ... Setting up libpython3.12-minimal:arm64 (3.12.7-1) ... Setting up libexpat1:arm64 (2.6.3-1) ... Setting up python3.12-minimal (3.12.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20376 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_arm64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../05-libcom-err2_1.47.1-1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../12-libnsl2_1.3.0-3+b2_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../14-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-1_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.7-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-1_arm64.deb ... Unpacking python3.12 (3.12.7-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21436 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.6-1_arm64.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.3.2-1_arm64.deb ... Unpacking openssl (3.3.2-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../008-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40.2-9_arm64.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../011-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../013-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../014-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../015-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../016-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../017-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libtcl8.6:arm64. Preparing to unpack .../018-libtcl8.6_8.6.15+dfsg-2_arm64.deb ... Unpacking libtcl8.6:arm64 (8.6.15+dfsg-2) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../019-libbrotli1_1.1.0-2+b4_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b4) ... Selecting previously unselected package libpng16-16t64:arm64. Preparing to unpack .../020-libpng16-16t64_1.6.44-2_arm64.deb ... Unpacking libpng16-16t64:arm64 (1.6.44-2) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../021-libfreetype6_2.13.3+dfsg-1_arm64.deb ... Unpacking libfreetype6:arm64 (2.13.3+dfsg-1) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../022-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../023-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../024-fontconfig-config_2.15.0-1.1_arm64.deb ... Unpacking fontconfig-config (2.15.0-1.1) ... Selecting previously unselected package libfontconfig1:arm64. Preparing to unpack .../025-libfontconfig1_2.15.0-1.1_arm64.deb ... Unpacking libfontconfig1:arm64 (2.15.0-1.1) ... Selecting previously unselected package libxau6:arm64. Preparing to unpack .../026-libxau6_1%3a1.0.9-1+b1_arm64.deb ... Unpacking libxau6:arm64 (1:1.0.9-1+b1) ... Selecting previously unselected package libxdmcp6:arm64. Preparing to unpack .../027-libxdmcp6_1%3a1.1.2-3+b1_arm64.deb ... Unpacking libxdmcp6:arm64 (1:1.1.2-3+b1) ... Selecting previously unselected package libxcb1:arm64. Preparing to unpack .../028-libxcb1_1.17.0-2_arm64.deb ... Unpacking libxcb1:arm64 (1.17.0-2) ... Selecting previously unselected package libx11-data. Preparing to unpack .../029-libx11-data_2%3a1.8.7-1_all.deb ... Unpacking libx11-data (2:1.8.7-1) ... Selecting previously unselected package libx11-6:arm64. Preparing to unpack .../030-libx11-6_2%3a1.8.7-1+b1_arm64.deb ... Unpacking libx11-6:arm64 (2:1.8.7-1+b1) ... Selecting previously unselected package libxrender1:arm64. Preparing to unpack .../031-libxrender1_1%3a0.9.10-1.1+b1_arm64.deb ... 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Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up fonts-lyx (2.4.2.1-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:arm64 (1.1.0-2+b4) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libdeflate0:arm64 (1.22-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libqhull-r8.0:arm64 (2020.2-6+b1) ... Setting up libcom-err2:arm64 (1.47.1-1) ... Setting up file (1:5.45-3) ... Setting up libjbig0:arm64 (2.1-6.1+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Oct 27 05:46:59 UTC 2024. Universal Time is now: Sun Oct 27 05:46:59 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:arm64 (2.82.2-2) ... No schema files found: doing nothing. Setting up libblas3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libjpeg62-turbo:arm64 (1:2.1.5-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libfribidi0:arm64 (1.0.15-1) ... Setting up libimagequant0:arm64 (2.18.0-1+b1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:arm64 (1.6.44-2) ... Setting up libtcl8.6:arm64 (8.6.15+dfsg-2) ... Setting up autopoint (0.22.5-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up libgfortran5:arm64 (14.2.0-7) ... Setting up autoconf (2.72-3) ... Setting up libwebp7:arm64 (1.4.0-0.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:arm64 (4.5.1+git230720-5) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libopenjp2-7:arm64 (2.5.0-2+b3) ... Setting up libx11-6:arm64 (2:1.8.7-1+b1) ... Setting up netbase (6.4) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up python-matplotlib-data (3.8.3-3) ... Setting up openssl (3.3.2-1) ... Setting up libwebpmux3:arm64 (1.4.0-0.1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.22.5-2) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b1) ... Setting up libtool (2.4.7-7) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libwebpdemux2:arm64 (1.4.0-0.1) ... Setting up libxext6:arm64 (2:1.3.4-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libreadline8t64:arm64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libxslt1.1:arm64 (1.1.35-1.1) ... Setting up libharfbuzz0b:arm64 (10.0.1-1) ... Setting up libxss1:arm64 (1:1.2.3-1+b1) ... Setting up libfontconfig1:arm64 (2.15.0-1.1) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1+b1) ... Setting up libxft2:arm64 (2.3.6-1+b1) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:arm64 (8.6.15-1) ... Setting up python3.12-tk (3.12.7-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3.13-tk (3.13.0-1) ... Setting up libraqm0:arm64 (0.10.1-1+b1) ... Setting up libnsl2:arm64 (1.3.0-3+b2) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up libpython3.12-stdlib:arm64 (3.12.7-1) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3.12 (3.12.7-1) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:arm64 (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up python3-zipp (3.20.2-1) ... Setting up python3-autocommand (2.2.2-3) ... 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Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-lz4 (4.0.2+dfsg-1+b4) ... Setting up python3-charset-normalizer (3.4.0-1) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-typeguard (4.3.0-1) ... Setting up python3-all (3.12.6-1) ... Setting up python3-tk:arm64 (3.12.6-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pil.imagetk:arm64 (10.4.0-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up python3-fs (2.4.16-4) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-11) ... Setting up python3-contourpy (1.3.0-2) ... Setting up dh-python (6.20241024) ... Setting up python3-scipy (1.13.1-5) ... Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-4) ... Setting up python3-pandas (2.2.3+dfsg-4) ... Setting up python3-fonttools (4.54.1-4) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up python3-matplotlib (3.8.3-3) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-bioframe-0.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-bioframe_0.4.1-1_source.changes dpkg-buildpackage: info: source package python-bioframe dpkg-buildpackage: info: source version 0.4.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running clean removing '/build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running build running build_py creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe copying bioframe/extras.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe copying bioframe/ops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe copying bioframe/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe copying bioframe/_version.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe copying bioframe/vis.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core copying bioframe/core/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core copying bioframe/core/arrops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core copying bioframe/core/checks.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core copying bioframe/core/construction.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core copying bioframe/core/specs.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core copying bioframe/core/stringops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io copying bioframe/io/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io copying bioframe/io/fileops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io copying bioframe/io/resources.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io copying bioframe/io/schemas.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/GRCh37.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/ce10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/ce11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/danRer10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/danRer11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/dm3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/dm6.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/hg19.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/hg38.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/mm10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/mm39.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/mm9.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/sacCer3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/t2t-chm13-v1.0.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/t2t-chm13-v1.1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/wuhCor1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build; python3.12 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 rootdir: /build/reproducible-path/python-bioframe-0.4.1 plugins: typeguard-4.3.0 collected 50 items tests/test_core_checks.py ........ [ 16%] tests/test_core_construction.py .... [ 24%] tests/test_core_specs.py ..... [ 34%] tests/test_core_stringops.py .... [ 42%] tests/test_extras.py ..sss.. [ 56%] tests/test_io.py .. [ 60%] tests/test_ops.py ............. [ 86%] tests/test_ops_select.py ....... [100%] =============================== warnings summary =============================== bioframe/io/resources.py:13 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/resources.py:13: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources tests/test_io.py:23 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_io.py:23: SyntaxWarning: invalid escape sequence '\s' assert bioframe.read_table(StringIO(d), schema="bed3", sep="\s+").shape == (3, 3) tests/test_io.py:24 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_io.py:24: SyntaxWarning: invalid escape sequence '\s' assert bioframe.read_table(StringIO(d), schema="bed6", sep="\s+").shape == (3, 6) tests/test_io.py:25 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_io.py:25: SyntaxWarning: invalid escape sequence '\s' assert bioframe.read_table(StringIO(d), schema="bed12", sep="\s+").shape == (3, 12) tests/test_io.py:33 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_io.py:33: SyntaxWarning: invalid escape sequence '\s' StringIO(d), schema="bedpe", sep="\s+", schema_is_strict=True .pybuild/cpython3_3.12_python-bioframe/build/tests/test_core_checks.py: 84 warnings .pybuild/cpython3_3.12_python-bioframe/build/tests/test_core_construction.py: 28 warnings .pybuild/cpython3_3.12_python-bioframe/build/tests/test_core_specs.py: 12 warnings .pybuild/cpython3_3.12_python-bioframe/build/tests/test_extras.py: 24 warnings .pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py: 326 warnings /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/specs.py:150: DeprecationWarning: is_categorical_dtype is deprecated and will be removed in a future version. Use isinstance(dtype, pd.CategoricalDtype) instead pd.api.types.is_categorical_dtype(chrom_dtype), .pybuild/cpython3_3.12_python-bioframe/build/tests/test_core_checks.py: 4 warnings .pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py: 6 warnings /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/ops.py:1550: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method. The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy. For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object. df_trimmed[sk].clip(lower=lower_vector, upper=upper_vector, inplace=True) .pybuild/cpython3_3.12_python-bioframe/build/tests/test_core_checks.py: 4 warnings .pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py: 6 warnings /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/ops.py:1551: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method. The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy. For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object. df_trimmed[ek].clip(lower=lower_vector, upper=upper_vector, inplace=True) .pybuild/cpython3_3.12_python-bioframe/build/tests/test_core_construction.py::test_any /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/construction.py:154: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method. The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy. For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object. out_df[sk1].fillna(0, inplace=True) .pybuild/cpython3_3.12_python-bioframe/build/tests/test_core_construction.py::test_any /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/construction.py:154: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` out_df[sk1].fillna(0, inplace=True) .pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py::test_trim /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py:210: FutureWarning: Mismatched null-like values and None found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise. pd.testing.assert_frame_equal( .pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py::test_overlap /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py:442: DeprecationWarning: Bitwise inversion '~' on bool is deprecated and will be removed in Python 3.16. This returns the bitwise inversion of the underlying int object and is usually not what you expect from negating a bool. Use the 'not' operator for boolean negation or ~int(x) if you really want the bitwise inversion of the underlying int. assert ~df1.equals( .pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py::test_assign_view /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py:1632: FutureWarning: Mismatched null-like values and None found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise. pd.testing.assert_frame_equal( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================= 47 passed, 3 skipped, 504 warnings in 4.39s ================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-bioframe/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/__pycache__/vis.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/__pycache__/extras.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/__pycache__/ops.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/__pycache__/_version.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__pycache__ creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/__pycache__/resources.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/__pycache__/fileops.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/__pycache__/schemas.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/__pycache__ creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/wuhCor1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/t2t-chm13-v1.1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/t2t-chm13-v1.0.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/sacCer3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/mm9.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/mm39.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/mm10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/hg38.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/hg19.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/dm6.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/dm3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/danRer11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/danRer10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/ce11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/ce10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/GRCh37.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/schemas.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/resources.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/fileops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__pycache__/construction.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__pycache__/checks.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__pycache__/stringops.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__pycache__/specs.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__pycache__/arrops.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/stringops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/specs.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/construction.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/checks.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/arrops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/vis.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/_version.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/ops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/extras.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/schemas.py to schemas.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/resources.py to resources.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/fileops.py to fileops.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/stringops.py to stringops.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/specs.py to specs.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/construction.py to construction.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/checks.py to checks.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/arrops.py to arrops.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/vis.py to vis.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/_version.py to _version.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/ops.py to ops.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/extras.py to extras.cpython-312.pyc running install_egg_info running egg_info creating bioframe.egg-info writing bioframe.egg-info/PKG-INFO writing dependency_links to bioframe.egg-info/dependency_links.txt writing requirements to bioframe.egg-info/requires.txt writing top-level names to bioframe.egg-info/top_level.txt writing manifest file 'bioframe.egg-info/SOURCES.txt' reading manifest file 'bioframe.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '__pycache__/*' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.pyd' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.git*' found anywhere in distribution warning: no previously-included files matching '.deps/*' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'bioframe.egg-info/SOURCES.txt' Copying bioframe.egg-info to /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe-0.4.1.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-bioframe: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-bioframe' in '../python3-bioframe_0.4.1-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-bioframe_0.4.1-1_arm64.buildinfo dpkg-genchanges --build=binary -O../python-bioframe_0.4.1-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1731319 and its subdirectories I: Current time: Sat Oct 26 17:47:54 -12 2024 I: pbuilder-time-stamp: 1730008074 Sun Oct 27 05:47:56 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Sun Oct 27 05:47:56 UTC 2024 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Sun Oct 27 05:47:56 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Sun Oct 27 05:47:56 UTC 2024 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-P30Tov' ==================================================================================== Sat Nov 29 12:10:58 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "2 python-bioframe unstable /srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba 0.4.1-1" as arguments. Sat Nov 29 12:10:58 UTC 2025 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-5yUXlF70" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Nov 29 12:10:58 UTC 2025 I: Downloading source for unstable/python-bioframe=0.4.1-1 Reading package lists... NOTICE: 'python-bioframe' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-bioframe.git Please use: git clone https://salsa.debian.org/med-team/python-bioframe.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 821 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main python-bioframe 0.4.1-1 (dsc) [1611 B] Get:2 http://deb.debian.org/debian unstable/main python-bioframe 0.4.1-1 (tar) [816 kB] Get:3 http://deb.debian.org/debian unstable/main python-bioframe 0.4.1-1 (diff) [3464 B] Fetched 821 kB in 0s (15.5 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'python-bioframe' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-bioframe.git Please use: git clone https://salsa.debian.org/med-team/python-bioframe.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 821 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main python-bioframe 0.4.1-1 (dsc) [1611 B] Get:2 http://deb.debian.org/debian unstable/main python-bioframe 0.4.1-1 (tar) [816 kB] Get:3 http://deb.debian.org/debian unstable/main python-bioframe 0.4.1-1 (diff) [3464 B] Fetched 821 kB in 0s (15.5 MB/s) Download complete and in download only mode ============================================================================= Re-Building python-bioframe in unstable on arm64 on codethink03-arm64 now. Date: Sat Nov 29 12:10:58 GMT 2025 Date UTC: Sat Nov 29 12:10:58 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba/pbuilderrc_Q3nE + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' python-bioframe = debian-installer -o python-bioframe = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' python-bioframe = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba/pbuilderrc_Q3nE --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba/b2 --logfile b2/build.log python-bioframe_0.4.1-1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Nov 30 02:10:58 +14 2025 I: pbuilder-time-stamp: 1764418258 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-bioframe_0.4.1-1.dsc] I: copying [./python-bioframe_0.4.1.orig.tar.gz] I: copying [./python-bioframe_0.4.1-1.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Jun 12 17:55:46 2023 gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-bioframe_0.4.1-1.dsc: no acceptable signature found dpkg-source: info: extracting python-bioframe in python-bioframe-0.4.1 dpkg-source: info: unpacking python-bioframe_0.4.1.orig.tar.gz dpkg-source: info: unpacking python-bioframe_0.4.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 32-bits.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/103515/tmp/hooks/D01_modify_environment starting debug: Running on codethink03-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Nov 29 12:11 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/103515/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/103515/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=5b7b865f4d7a412c9f8005932303f767 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=103515 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba/pbuilderrc_Q3nE --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba/b2 --logfile b2/build.log python-bioframe_0.4.1-1.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/103515/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-matplotlib, python3-numpy, python3-pandas, python3-pytest, python3-requests, python3-setuptools, python3-wheel dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20056 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-wheel; however: Package python3-wheel is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtcl8.6{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-appdirs{a} python3-attr{a} python3-autocommand{a} python3-brotli{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-fonttools{a} python3-fs{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyparsing{a} python3-pytest{a} python3-requests{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-sympy{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-urllib3{a} python3-wheel{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.12-tk{a} python3.13-tk{a} readline-common{a} sensible-utils{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx python3-bottleneck python3-bs4 python3-cssselect python3-html5lib python3-jinja2 python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pygments python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 154 newly installed, 0 to remove and 0 not upgraded. Need to get 95.1 MB of archives. After unpacking 415 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.12-minimal arm64 3.12.7-1 [807 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.3-1 [90.2 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.12-minimal arm64 3.12.7-1 [1941 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.1-1 [22.8 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 12 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3 [78.4 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libnsl2 arm64 1.3.0-3+b2 [37.7 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libpython3.12-stdlib arm64 3.12.7-1 [1901 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 python3.12 arm64 3.12.7-1 [671 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.3.2-1 [1348 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20240203 [158 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-9 [96.6 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libtcl8.6 arm64 8.6.15+dfsg-2 [982 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b4 [292 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.44-2 [273 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-1.1 [317 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-1.1 [385 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.9-1+b1 [18.1 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.2-3+b1 [24.3 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2 [143 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.7-1 [328 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.7-1+b1 [775 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.10-1.1+b1 [27.0 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libxft2 arm64 2.3.6-1+b1 [51.0 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+23.1 [216 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libxss1 arm64 1:1.2.3-1+b1 [17.0 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libtk8.6 arm64 8.6.15-1 [738 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7 [533 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 blt arm64 2.5.3+dfsg-7 [6024 B] Get: 61 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 67 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.1 [630 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.3.0-1 [36.5 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 81 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.20.2-1 [10.3 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 75.2.0-1 [731 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20241024 [109 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 fonts-lyx all 2.4.2.1-1 [190 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.0-3 [91.7 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.15-1 [71.8 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 14.2.0-7 [361 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.82.2-2 [1409 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-2 [69.2 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 10.0.1-1 [441 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libimagequant0 arm64 2.18.0-1+b1 [34.6 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b1 [30.4 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3 [172 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.0-3 [1757 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b1 [25.0 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-4+b1 [142 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libopenjp2-7 arm64 2.5.0-2+b3 [177 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libqhull-r8.0 arm64 2020.2-6+b1 [226 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libraqm0 arm64 0.10.1-1+b1 [13.7 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [111 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.4.0-0.1 [267 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libwebpdemux2 arm64 1.4.0-0.1 [110 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libwebpmux3 arm64 1.4.0-0.1 [122 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libxslt1.1 arm64 1.1.35-1.1 [221 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 python-matplotlib-data all 3.8.3-3 [2731 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 python3-all arm64 3.12.6-1 [1040 B] Get: 115 http://deb.debian.org/debian unstable/main arm64 python3-appdirs all 1.4.4-4 [12.5 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 python3-attr all 24.2.0-1 [68.4 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 python3-brotli arm64 1.1.0-2+b4 [301 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 119 http://deb.debian.org/debian unstable/main arm64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 python3-charset-normalizer arm64 3.4.0-1 [112 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 python3-numpy arm64 1:1.26.4+ds-11 [3351 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 python3-contourpy arm64 1.3.0-2 [191 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 python3-cycler all 0.12.1-1 [9496 B] Get: 124 http://deb.debian.org/debian unstable/main arm64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 python3-tz all 2024.1-2 [30.9 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 python3-six all 1.16.0-7 [16.4 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 python3-fs all 2.4.16-4 [95.4 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 python3-lxml arm64 5.3.0-1 [1096 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 python3-lz4 arm64 4.0.2+dfsg-1+b4 [25.1 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 python3-scipy arm64 1.13.1-5 [15.4 MB] Get: 132 http://deb.debian.org/debian unstable/main arm64 python3-mpmath all 1.3.0-1 [419 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 python3-sympy all 1.13.3-1 [4147 kB] Get: 134 http://deb.debian.org/debian unstable/main arm64 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get: 135 http://deb.debian.org/debian unstable/main arm64 unicode-data all 15.1.0-1 [8547 kB] Get: 136 http://deb.debian.org/debian unstable/main arm64 python3-fonttools arm64 4.54.1-4 [1356 kB] Get: 137 http://deb.debian.org/debian unstable/main arm64 python3-idna all 3.8-2 [41.6 kB] Get: 138 http://deb.debian.org/debian unstable/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 139 http://deb.debian.org/debian unstable/main arm64 python3-kiwisolver arm64 1.4.7-2 [56.7 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 python3-pil arm64 10.4.0-1 [480 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 python3.12-tk arm64 3.12.7-1 [110 kB] Get: 142 http://deb.debian.org/debian unstable/main arm64 python3.13-tk arm64 3.13.0-1 [101 kB] Get: 143 http://deb.debian.org/debian unstable/main arm64 python3-tk arm64 3.12.6-1 [9428 B] Get: 144 http://deb.debian.org/debian unstable/main arm64 python3-pil.imagetk arm64 10.4.0-1 [79.4 kB] Get: 145 http://deb.debian.org/debian unstable/main arm64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 146 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 24.1-1 [45.8 kB] Get: 147 http://deb.debian.org/debian unstable/main arm64 python3-matplotlib arm64 3.8.3-3 [5509 kB] Get: 148 http://deb.debian.org/debian unstable/main arm64 python3-pandas-lib arm64 2.2.3+dfsg-4 [3746 kB] Get: 149 http://deb.debian.org/debian unstable/main arm64 python3-pandas all 2.2.3+dfsg-4 [3096 kB] Get: 150 http://deb.debian.org/debian unstable/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 151 http://deb.debian.org/debian unstable/main arm64 python3-pytest all 8.3.3-1 [249 kB] Get: 152 http://deb.debian.org/debian unstable/main arm64 python3-urllib3 all 2.0.7-2 [111 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 154 http://deb.debian.org/debian unstable/main arm64 python3-wheel all 0.44.0-2 [53.4 kB] Fetched 95.1 MB in 1s (177 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20056 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-1_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.7-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-1_arm64.deb ... Unpacking python3.12-minimal (3.12.7-1) ... Setting up libpython3.12-minimal:arm64 (3.12.7-1) ... Setting up libexpat1:arm64 (2.6.3-1) ... Setting up python3.12-minimal (3.12.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20376 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_arm64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../05-libcom-err2_1.47.1-1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../12-libnsl2_1.3.0-3+b2_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../14-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-1_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.7-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-1_arm64.deb ... Unpacking python3.12 (3.12.7-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21436 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.6-1_arm64.deb ... Unpacking python3 (3.12.6-1) ... 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Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up fonts-lyx (2.4.2.1-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:arm64 (1.1.0-2+b4) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libdeflate0:arm64 (1.22-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libqhull-r8.0:arm64 (2020.2-6+b1) ... Setting up libcom-err2:arm64 (1.47.1-1) ... Setting up file (1:5.45-3) ... Setting up libjbig0:arm64 (2.1-6.1+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Nov 29 12:11:44 UTC 2025. Universal Time is now: Sat Nov 29 12:11:44 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:arm64 (2.82.2-2) ... No schema files found: doing nothing. Setting up libblas3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libjpeg62-turbo:arm64 (1:2.1.5-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libfribidi0:arm64 (1.0.15-1) ... Setting up libimagequant0:arm64 (2.18.0-1+b1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:arm64 (1.6.44-2) ... Setting up libtcl8.6:arm64 (8.6.15+dfsg-2) ... Setting up autopoint (0.22.5-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up libgfortran5:arm64 (14.2.0-7) ... Setting up autoconf (2.72-3) ... Setting up libwebp7:arm64 (1.4.0-0.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:arm64 (4.5.1+git230720-5) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libopenjp2-7:arm64 (2.5.0-2+b3) ... Setting up libx11-6:arm64 (2:1.8.7-1+b1) ... Setting up netbase (6.4) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up python-matplotlib-data (3.8.3-3) ... Setting up openssl (3.3.2-1) ... Setting up libwebpmux3:arm64 (1.4.0-0.1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.22.5-2) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b1) ... Setting up libtool (2.4.7-7) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libwebpdemux2:arm64 (1.4.0-0.1) ... Setting up libxext6:arm64 (2:1.3.4-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libreadline8t64:arm64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libxslt1.1:arm64 (1.1.35-1.1) ... Setting up libharfbuzz0b:arm64 (10.0.1-1) ... Setting up libxss1:arm64 (1:1.2.3-1+b1) ... Setting up libfontconfig1:arm64 (2.15.0-1.1) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1+b1) ... Setting up libxft2:arm64 (2.3.6-1+b1) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:arm64 (8.6.15-1) ... Setting up python3.12-tk (3.12.7-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3.13-tk (3.13.0-1) ... Setting up libraqm0:arm64 (0.10.1-1+b1) ... Setting up libnsl2:arm64 (1.3.0-3+b2) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up libpython3.12-stdlib:arm64 (3.12.7-1) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3.12 (3.12.7-1) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:arm64 (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up python3-zipp (3.20.2-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-wheel (0.44.0-2) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-7) ... Setting up python3-pil:arm64 (10.4.0-1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.1-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2024.8.30+dfsg-1) ... Setting up python3-brotli (1.1.0-2+b4) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.7-2) ... Setting up python3-idna (3.8-2) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-urllib3 (2.0.7-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-lxml:arm64 (5.3.0-1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.13.3-1) ... Setting up python3-attr (24.2.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-lz4 (4.0.2+dfsg-1+b4) ... Setting up python3-charset-normalizer (3.4.0-1) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-typeguard (4.3.0-1) ... Setting up python3-all (3.12.6-1) ... Setting up python3-tk:arm64 (3.12.6-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pil.imagetk:arm64 (10.4.0-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up python3-fs (2.4.16-4) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-11) ... Setting up python3-contourpy (1.3.0-2) ... Setting up dh-python (6.20241024) ... Setting up python3-scipy (1.13.1-5) ... Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-4) ... Setting up python3-pandas (2.2.3+dfsg-4) ... Setting up python3-fonttools (4.54.1-4) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up python3-matplotlib (3.8.3-3) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/103515/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/103515/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/python-bioframe-0.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-bioframe_0.4.1-1_source.changes dpkg-buildpackage: info: source package python-bioframe dpkg-buildpackage: info: source version 0.4.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running clean removing '/build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running build running build_py creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe copying bioframe/extras.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe copying bioframe/ops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe copying bioframe/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe copying bioframe/_version.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe copying bioframe/vis.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core copying bioframe/core/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core copying bioframe/core/arrops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core copying bioframe/core/checks.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core copying bioframe/core/construction.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core copying bioframe/core/specs.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core copying bioframe/core/stringops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io copying bioframe/io/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io copying bioframe/io/fileops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io copying bioframe/io/resources.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io copying bioframe/io/schemas.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/GRCh37.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/ce10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/ce11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/danRer10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/danRer11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/dm3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/dm6.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/hg19.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/hg38.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/mm10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/mm39.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/mm9.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/sacCer3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/t2t-chm13-v1.0.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/t2t-chm13-v1.1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data copying bioframe/io/data/wuhCor1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build; python3.12 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 rootdir: /build/reproducible-path/python-bioframe-0.4.1 plugins: typeguard-4.3.0 collected 50 items tests/test_core_checks.py ........ [ 16%] tests/test_core_construction.py .... [ 24%] tests/test_core_specs.py ..... [ 34%] tests/test_core_stringops.py .... [ 42%] tests/test_extras.py ..sss.. [ 56%] tests/test_io.py .. [ 60%] tests/test_ops.py ............. [ 86%] tests/test_ops_select.py ....... [100%] =============================== warnings summary =============================== bioframe/io/resources.py:13 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/resources.py:13: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources tests/test_io.py:23 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_io.py:23: SyntaxWarning: invalid escape sequence '\s' assert bioframe.read_table(StringIO(d), schema="bed3", sep="\s+").shape == (3, 3) tests/test_io.py:24 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_io.py:24: SyntaxWarning: invalid escape sequence '\s' assert bioframe.read_table(StringIO(d), schema="bed6", sep="\s+").shape == (3, 6) tests/test_io.py:25 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_io.py:25: SyntaxWarning: invalid escape sequence '\s' assert bioframe.read_table(StringIO(d), schema="bed12", sep="\s+").shape == (3, 12) tests/test_io.py:33 /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_io.py:33: SyntaxWarning: invalid escape sequence '\s' StringIO(d), schema="bedpe", sep="\s+", schema_is_strict=True .pybuild/cpython3_3.12_python-bioframe/build/tests/test_core_checks.py: 84 warnings .pybuild/cpython3_3.12_python-bioframe/build/tests/test_core_construction.py: 28 warnings .pybuild/cpython3_3.12_python-bioframe/build/tests/test_core_specs.py: 12 warnings .pybuild/cpython3_3.12_python-bioframe/build/tests/test_extras.py: 24 warnings .pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py: 326 warnings /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/specs.py:150: DeprecationWarning: is_categorical_dtype is deprecated and will be removed in a future version. Use isinstance(dtype, pd.CategoricalDtype) instead pd.api.types.is_categorical_dtype(chrom_dtype), .pybuild/cpython3_3.12_python-bioframe/build/tests/test_core_checks.py: 4 warnings .pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py: 6 warnings /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/ops.py:1550: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method. The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy. For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object. df_trimmed[sk].clip(lower=lower_vector, upper=upper_vector, inplace=True) .pybuild/cpython3_3.12_python-bioframe/build/tests/test_core_checks.py: 4 warnings .pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py: 6 warnings /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/ops.py:1551: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method. The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy. For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object. df_trimmed[ek].clip(lower=lower_vector, upper=upper_vector, inplace=True) .pybuild/cpython3_3.12_python-bioframe/build/tests/test_core_construction.py::test_any /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/construction.py:154: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method. The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy. For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object. out_df[sk1].fillna(0, inplace=True) .pybuild/cpython3_3.12_python-bioframe/build/tests/test_core_construction.py::test_any /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/construction.py:154: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` out_df[sk1].fillna(0, inplace=True) .pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py::test_trim /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py:210: FutureWarning: Mismatched null-like values and None found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise. pd.testing.assert_frame_equal( .pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py::test_overlap /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py:442: DeprecationWarning: Bitwise inversion '~' on bool is deprecated and will be removed in Python 3.16. This returns the bitwise inversion of the underlying int object and is usually not what you expect from negating a bool. Use the 'not' operator for boolean negation or ~int(x) if you really want the bitwise inversion of the underlying int. assert ~df1.equals( .pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py::test_assign_view /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/tests/test_ops.py:1632: FutureWarning: Mismatched null-like values and None found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise. pd.testing.assert_frame_equal( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================= 47 passed, 3 skipped, 504 warnings in 4.30s ================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-bioframe/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/__pycache__/vis.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/__pycache__/extras.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/__pycache__/ops.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/__pycache__/_version.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__pycache__ creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/__pycache__/resources.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/__pycache__/fileops.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/__pycache__/schemas.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/__pycache__ creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/wuhCor1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/t2t-chm13-v1.1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/t2t-chm13-v1.0.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/sacCer3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/mm9.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/mm39.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/mm10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/hg38.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/hg19.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/dm6.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/dm3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/danRer11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/danRer10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/ce11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/ce10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/data/GRCh37.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/data copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/schemas.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/resources.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/fileops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/io/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__pycache__/construction.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__pycache__/checks.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__pycache__/stringops.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__pycache__/specs.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__pycache__/arrops.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__pycache__ copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/stringops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/specs.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/construction.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/checks.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/arrops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/core/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/vis.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/_version.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/ops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.12_python-bioframe/build/bioframe/extras.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/schemas.py to schemas.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/resources.py to resources.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/fileops.py to fileops.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/io/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/stringops.py to stringops.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/specs.py to specs.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/construction.py to construction.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/checks.py to checks.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/arrops.py to arrops.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/core/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/vis.py to vis.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/_version.py to _version.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/ops.py to ops.cpython-312.pyc byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe/extras.py to extras.cpython-312.pyc running install_egg_info running egg_info creating bioframe.egg-info writing bioframe.egg-info/PKG-INFO writing dependency_links to bioframe.egg-info/dependency_links.txt writing requirements to bioframe.egg-info/requires.txt writing top-level names to bioframe.egg-info/top_level.txt writing manifest file 'bioframe.egg-info/SOURCES.txt' reading manifest file 'bioframe.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '__pycache__/*' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.pyd' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.git*' found anywhere in distribution warning: no previously-included files matching '.deps/*' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'bioframe.egg-info/SOURCES.txt' Copying bioframe.egg-info to /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.12/dist-packages/bioframe-0.4.1.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-bioframe: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-bioframe' in '../python3-bioframe_0.4.1-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-bioframe_0.4.1-1_arm64.buildinfo dpkg-genchanges --build=binary -O../python-bioframe_0.4.1-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/103515/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/103515/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/103515 and its subdirectories I: Current time: Sun Nov 30 02:12:43 +14 2025 I: pbuilder-time-stamp: 1764418363 + false + set +x Sat Nov 29 12:12:43 UTC 2025 I: Signing ./b2/python-bioframe_0.4.1-1_arm64.buildinfo as python-bioframe_0.4.1-1_arm64.buildinfo.asc Sat Nov 29 12:12:43 UTC 2025 I: Signed ./b2/python-bioframe_0.4.1-1_arm64.buildinfo as ./b2/python-bioframe_0.4.1-1_arm64.buildinfo.asc Sat Nov 29 12:12:43 UTC 2025 - build #2 for python-bioframe/unstable/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Sat Nov 29 12:12:43 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-5yUXlF70, removing. /srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba: total 116 drwxr-xr-x 2 jenkins jenkins 4096 Oct 27 05:47 b1 drwxr-xr-x 2 jenkins jenkins 4096 Oct 27 05:49 b2 -rw-r--r-- 1 jenkins jenkins 1611 Jun 12 2023 python-bioframe_0.4.1-1.dsc -rw------- 1 jenkins jenkins 100064 Oct 27 05:47 rbuildlog.4lizEcv /srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba/b1: total 1020 -rw-r--r-- 1 jenkins jenkins 96987 Oct 27 05:47 build.log -rw-r--r-- 1 jenkins jenkins 3464 Oct 27 05:47 python-bioframe_0.4.1-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1611 Oct 27 05:47 python-bioframe_0.4.1-1.dsc -rw-r--r-- 1 jenkins jenkins 8576 Oct 27 05:47 python-bioframe_0.4.1-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 9458 Oct 27 05:47 python-bioframe_0.4.1-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1132 Oct 27 05:47 python-bioframe_0.4.1-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 1563 Oct 27 05:47 python-bioframe_0.4.1-1_source.changes -rw-r--r-- 1 jenkins jenkins 815763 Oct 27 05:47 python-bioframe_0.4.1.orig.tar.gz -rw-r--r-- 1 jenkins jenkins 71588 Oct 27 05:47 python3-bioframe_0.4.1-1_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba/b2: total 1020 -rw-r--r-- 1 jenkins jenkins 98922 Oct 27 05:49 build.log -rw-r--r-- 1 jenkins jenkins 3464 Oct 27 05:49 python-bioframe_0.4.1-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1611 Oct 27 05:49 python-bioframe_0.4.1-1.dsc -rw-r--r-- 1 jenkins jenkins 8576 Oct 27 05:49 python-bioframe_0.4.1-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 9458 Oct 27 05:49 python-bioframe_0.4.1-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1132 Oct 27 05:49 python-bioframe_0.4.1-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 1563 Oct 27 05:49 python-bioframe_0.4.1-1_source.changes -rw-r--r-- 1 jenkins jenkins 815763 Oct 27 05:49 python-bioframe_0.4.1.orig.tar.gz -rw-r--r-- 1 jenkins jenkins 71588 Oct 27 05:49 python3-bioframe_0.4.1-1_all.deb Sun Oct 27 05:49:44 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Sun Oct 27 05:49:45 UTC 2024 I: python-bioframe_0.4.1-1_arm64.changes: Format: 1.8 Date: Mon, 12 Jun 2023 23:21:10 +0530 Source: python-bioframe Binary: python3-bioframe Architecture: all Version: 0.4.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: python3-bioframe - library to enable flexible, scalable operations on genomic interv Changes: python-bioframe (0.4.1-1) unstable; urgency=medium . * New upstream version 0.4.1 + Refresh patches Checksums-Sha1: 9fda24c084909c96c4410718fa11f87cc727f9c0 8576 python-bioframe_0.4.1-1_arm64.buildinfo ae532360ccc6ece47192deca7babc5bb43f1671e 71588 python3-bioframe_0.4.1-1_all.deb Checksums-Sha256: df0db0d42fdcf9c7eac0f9ed1c2ddda404ca2dd9bf825985a0d8d7c569970eed 8576 python-bioframe_0.4.1-1_arm64.buildinfo c6f2df279fbbfe1c8cecb3f6f7ac98c9651a7216a29b01d928642b62a77c4ed9 71588 python3-bioframe_0.4.1-1_all.deb Files: c0d64be28f5ea0a3c5030719990d3f79 8576 science optional python-bioframe_0.4.1-1_arm64.buildinfo d66a31611031bfd02923bd0b77bf7212 71588 science optional python3-bioframe_0.4.1-1_all.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/python-bioframe_0.4.1-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/python-bioframe_0.4.1-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/python-bioframe_0.4.1-1.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/python-bioframe_0.4.1-1.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/arm64/python-bioframe_0.4.1-1_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/python-bioframe_0.4.1-1.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-10-27 05:47:55.836719340 +0000 +++ b2/build.log 2024-10-27 05:49:44.752822465 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Oct 26 17:46:32 -12 2024 -I: pbuilder-time-stamp: 1730007992 +I: Current time: Sun Nov 30 02:10:58 +14 2025 +I: pbuilder-time-stamp: 1764418258 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -27,52 +27,84 @@ dpkg-source: info: applying 32-bits.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1731319/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/103515/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 29 12:11 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/103515/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/103515/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='92638fd1ba3b4a9e97a9fb2b4da7fa4c' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1731319' - PS1='# ' - PS2='> ' + INVOCATION_ID=5b7b865f4d7a412c9f8005932303f767 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=103515 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba/pbuilderrc_wou2 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba/b1 --logfile b1/build.log python-bioframe_0.4.1-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba/pbuilderrc_Q3nE --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba/b2 --logfile b2/build.log python-bioframe_0.4.1-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink02-arm64 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1731319/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/103515/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -280,7 +312,7 @@ Get: 152 http://deb.debian.org/debian unstable/main arm64 python3-urllib3 all 2.0.7-2 [111 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 154 http://deb.debian.org/debian unstable/main arm64 python3-wheel all 0.44.0-2 [53.4 kB] -Fetched 95.1 MB in 1s (131 MB/s) +Fetched 95.1 MB in 1s (177 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20056 files and directories currently installed.) @@ -791,8 +823,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun Oct 27 05:46:59 UTC 2024. -Universal Time is now: Sun Oct 27 05:46:59 UTC 2024. +Local time is now: Sat Nov 29 12:11:44 UTC 2025. +Universal Time is now: Sat Nov 29 12:11:44 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... @@ -937,7 +969,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-bioframe-0.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-bioframe_0.4.1-1_source.changes +I: user script /srv/workspace/pbuilder/103515/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/103515/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-bioframe-0.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-bioframe_0.4.1-1_source.changes dpkg-buildpackage: info: source package python-bioframe dpkg-buildpackage: info: source version 0.4.1-1 dpkg-buildpackage: info: source distribution unstable @@ -1128,7 +1164,7 @@ pd.testing.assert_frame_equal( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -================= 47 passed, 3 skipped, 504 warnings in 4.39s ================== +================= 47 passed, 3 skipped, 504 warnings in 4.30s ================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -1277,12 +1313,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/103515/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/103515/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1731319 and its subdirectories -I: Current time: Sat Oct 26 17:47:54 -12 2024 -I: pbuilder-time-stamp: 1730008074 +I: removing directory /srv/workspace/pbuilder/103515 and its subdirectories +I: Current time: Sun Nov 30 02:12:43 +14 2025 +I: pbuilder-time-stamp: 1764418363 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/python-bioframe_0.4.1-1.diff: 66.2% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/python-bioframe_0.4.1-1.diff.gz b2/build.log: 84.3% -- replaced with stdout Compressing the 1st log... b1/build.log: 84.8% -- replaced with stdout Sun Oct 27 05:49:46 UTC 2024 I: diffoscope 282 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_python-bioframe_unstable_arm64_1730008186 + touch /var/log/reproducible-builds/diffoscope_stamp_python-bioframe_unstable_arm64_1730008186 + RESULT=0 + systemd-run '--description=diffoscope on python-bioframe/0.4.1-1 in unstable/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_7-41758 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba --run-session -c jenkins-reproducible-unstable-diffoscope-a5b129cd-37de-4149-8669-b22d0d6dc58e -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba/dbd-tmp-ekkyErR ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba/python-bioframe_0.4.1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba/python-bioframe_0.4.1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba/python-bioframe_0.4.1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba/b1/python-bioframe_0.4.1-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba/b2/python-bioframe_0.4.1-1_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_7-41758.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba/python-bioframe_0.4.1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba/python-bioframe_0.4.1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba/python-bioframe_0.4.1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba/b1/python-bioframe_0.4.1-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.qx3iIWba/b2/python-bioframe_0.4.1-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.365s) 0.365s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.015s) 0.015s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 700ms CPU time consumed: 700ms _ _ _ _ __ _ __ _ _| |_| |__ ___ _ __ | |__ (_) ___ / _|_ __ __ _ _ __ ___ | '_ \| | | | __| '_ \ / _ \| '_ \ _____| '_ \| |/ _ \| |_| '__/ _` | '_ ` _ \ | |_) | |_| | |_| | | | (_) | | | |_____| |_) | | (_) | _| | | (_| | | | | | | | .__/ \__, |\__|_| |_|\___/|_| |_| |_.__/|_|\___/|_| |_| \__,_|_| |_| |_| |_| |___/ ___ / _ \ | __/ \___| Sun Oct 27 06:13:02 UTC 2024 I: diffoscope 282 found no differences in the changes files, and a .buildinfo file also exists. Sun Oct 27 06:13:02 UTC 2024 I: python-bioframe from unstable built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-10-27 06:13:04] INFO: Starting at 2024-10-27 06:13:04.528698 [2024-10-27 06:13:04] INFO: Generating the pages of 1 package(s) [2024-10-27 06:13:05] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/arm64/python-bioframe didn't produce a buildlog, even though it has been built. [2024-10-27 06:13:05] INFO: Finished at 2024-10-27 06:13:05.521975, took: 0:00:00.993288 Sun Oct 27 06:13:05 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/arm64/python-bioframe.html Sun Oct 27 06:13:05 UTC 2024 I: Submitting .buildinfo files to external archives: Sun Oct 27 06:13:05 UTC 2024 I: Submitting 12K b1/python-bioframe_0.4.1-1_arm64.buildinfo.asc https://buildinfo.debian.net/9fda24c084909c96c4410718fa11f87cc727f9c0/python-bioframe_0.4.1-1_all Sun Oct 27 06:13:08 UTC 2024 I: Submitting 12K b2/python-bioframe_0.4.1-1_arm64.buildinfo.asc https://buildinfo.debian.net/db1ce4c17d859a6751f4fad4871a132c1518160f/python-bioframe_0.4.1-1_all Sun Oct 27 06:13:27 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Oct 27 06:13:27 UTC 2024 I: Done submitting .buildinfo files. Sun Oct 27 06:13:27 UTC 2024 I: Removing signed python-bioframe_0.4.1-1_arm64.buildinfo.asc files: removed './b1/python-bioframe_0.4.1-1_arm64.buildinfo.asc' removed './b2/python-bioframe_0.4.1-1_arm64.buildinfo.asc' 1730009607 arm64 unstable python-bioframe Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/python-bioframe_0.4.1-1.rbuild.log: 83.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/python-bioframe_0.4.1-1.rbuild.log.gz [2024-10-27 06:13:27] INFO: Starting at 2024-10-27 06:13:27.665802 [2024-10-27 06:13:27] INFO: Generating the pages of 1 package(s) [2024-10-27 06:13:27] INFO: Finished at 2024-10-27 06:13:27.989554, took: 0:00:00.323763 All cleanup done. Sun Oct 27 06:13:28 UTC 2024 - total duration: 0h 26m 45s. Sun Oct 27 06:13:28 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-dLT2vTyC, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 27min 10.961s CPU time consumed: 8.989s