Running as unit: rb-build-arm64_7-41809.service ==================================================================================== Sun Oct 27 11:18:35 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_7) on jenkins, called using "codethink02-arm64 codethink03-arm64" as arguments. Sun Oct 27 11:18:35 UTC 2024 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-OKChTqyY" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Oct 27 11:18:35 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink02-arm64.debian.net is marked as down. Sun Oct 27 11:18:35 UTC 2024 - checking via ssh if codethink02-arm64.debian.net is up. removed '/tmp/read-only-fs-test-eRWXFM' Sun Oct 27 11:18:37 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Sun Oct 27 11:18:37 UTC 2024 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-9u5QcN' ok, let's check if fasttree is building anywhere yet… ok, fasttree is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of fasttree in unstable on arm64 on jenkins now. 1st build will be done on codethink02-arm64.debian.net. 2nd build will be done on codethink03-arm64.debian.net. ============================================================================= Sun Oct 27 11:19:01 UTC 2024 I: starting to build fasttree/unstable/arm64 on jenkins on '2024-10-27 11:18' Sun Oct 27 11:19:01 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_7/41809/console.log 1730027941 arm64 unstable fasttree Sun Oct 27 11:19:01 UTC 2024 I: Downloading source for unstable/fasttree=2.1.11-2 --2024-10-27 11:19:01-- http://deb.debian.org/debian/pool/main/f/fasttree/fasttree_2.1.11-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2085 (2.0K) [text/prs.lines.tag] Saving to: ‘fasttree_2.1.11-2.dsc’ 0K .. 100% 273M=0s 2024-10-27 11:19:01 (273 MB/s) - ‘fasttree_2.1.11-2.dsc’ saved [2085/2085] --2024-10-27 11:19:01-- http://deb.debian.org/debian/pool/main/f/fasttree/fasttree_2.1.11-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2085 (2.0K) [text/prs.lines.tag] Saving to: ‘fasttree_2.1.11-2.dsc’ 0K .. 100% 273M=0s 2024-10-27 11:19:01 (273 MB/s) - ‘fasttree_2.1.11-2.dsc’ saved [2085/2085] Sun Oct 27 11:19:01 UTC 2024 I: fasttree_2.1.11-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: fasttree Binary: fasttree Architecture: any Version: 2.1.11-2 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Thorsten Alteholz , Andreas Tille , Roland Fehrenbacher Homepage: http://www.microbesonline.org/fasttree/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/fasttree Vcs-Git: https://salsa.debian.org/med-team/fasttree.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: fasttree deb science optional arch=any Checksums-Sha1: 2d929e726513c1b450a186b14ddebe0c2af0b960 96068 fasttree_2.1.11.orig.tar.xz 6941e408e19f05453775113821f54735dee3140f 34064 fasttree_2.1.11-2.debian.tar.xz Checksums-Sha256: 7f15713f02afb167f4f33dc067b5b2282b219b22fbaa17eb8f771a7147a05a5c 96068 fasttree_2.1.11.orig.tar.xz c423cfcdfd3f65d160e3c1c397bb7d8eea2c0e17a8892ded3e2c3a0c379560cf 34064 fasttree_2.1.11-2.debian.tar.xz Files: 44830517cc52f2406ba315a14f2ff10d 96068 fasttree_2.1.11.orig.tar.xz 67fc001726234552d41a2ad15b83692d 34064 fasttree_2.1.11-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/bjpQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtH69w/+P8bggygsVNHF2RykRMHM8eyrH3D8eZjM BeO2vvriwNddLvspecpfi1OvvXk9U/bz/6k0DDQ2h2gJ0R9zFAg43mNwkc/q6vx4 fK49RVLgPtjwgrvaNBYuGxH0QgbkfYHeRN368uFqLcFZ5FKU4wm65jHu8Eh+JnWW gFe7F5KLOKelhBlO4/NTLIaiA5kOaL7l2xi2G19IHn/9bLzab/xoD/UJYUY39xzT G5ztJx4Cxud8TYK5QYD4Vbcdd3kJJdelS/GE1q3NOIOf9bBGMaN/1mb2mMFg41fT j1QgW/vOX9ccx/xysaSHWE0ZU9aF/zz6ZpGSc+N54y/dTUc7pwoGNCAA8510jw3B f7WhuqBJikHsLA5jXAK7CGbJYT5CVN4KOlJN0pTINPe+V07vgQxsu2YOJP40eTHA aBS7eTPhgZDI9fk+JBe9SnnwH4EMyJZgAQ8M95rq2SH2RXYvux8BcYSL4tOeTmD5 9/tERl/31vSB4hU98hN9VHkrDXhUXsZMEY92UveK44TfradVFLg2gSlQg2nPUHtw 2cahdOPKI8oTZfVmDDUOAbbNYBVH62u2RUsu0FjaCA1EP6mTFKEN8t1ZbfefcOIW Zny0LvVL3uEBVizFhdR1ftnqrU77/FAHt8xJyEmNzq1LdXHBcAdMQ4xOzKutbT8U qy9lckkkXks= =PLs9 -----END PGP SIGNATURE----- Sun Oct 27 11:19:01 UTC 2024 I: Checking whether the package is not for us Sun Oct 27 11:19:01 UTC 2024 I: Starting 1st build on remote node codethink02-arm64.debian.net. Sun Oct 27 11:19:01 UTC 2024 I: Preparing to do remote build '1' on codethink02-arm64.debian.net. Sun Oct 27 11:19:01 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink02-arm64.debian.net is marked as down. Sun Oct 27 11:19:01 UTC 2024 - checking via ssh if codethink02-arm64.debian.net is up. removed '/tmp/read-only-fs-test-wjSCaF' ==================================================================================== Sun Oct 27 11:19:03 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink02-arm64, called using "1 fasttree unstable /srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk 2.1.11-2" as arguments. Sun Oct 27 11:19:03 UTC 2024 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-M3LRMmje" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Oct 27 11:19:03 UTC 2024 I: Downloading source for unstable/fasttree=2.1.11-2 Reading package lists... NOTICE: 'fasttree' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/fasttree.git Please use: git clone https://salsa.debian.org/med-team/fasttree.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 132 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main fasttree 2.1.11-2 (dsc) [2085 B] Get:2 http://deb.debian.org/debian unstable/main fasttree 2.1.11-2 (tar) [96.1 kB] Get:3 http://deb.debian.org/debian unstable/main fasttree 2.1.11-2 (diff) [34.1 kB] Fetched 132 kB in 0s (1227 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'fasttree' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/fasttree.git Please use: git clone https://salsa.debian.org/med-team/fasttree.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 132 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main fasttree 2.1.11-2 (dsc) [2085 B] Get:2 http://deb.debian.org/debian unstable/main fasttree 2.1.11-2 (tar) [96.1 kB] Get:3 http://deb.debian.org/debian unstable/main fasttree 2.1.11-2 (diff) [34.1 kB] Fetched 132 kB in 0s (1227 kB/s) Download complete and in download only mode ============================================================================= Building fasttree in unstable on arm64 on codethink02-arm64 now. Date: Sun Oct 27 11:19:03 GMT 2024 Date UTC: Sun Oct 27 11:19:03 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sat Oct 26 23:19:03 -12 2024 I: pbuilder-time-stamp: 1730027943 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fasttree_2.1.11-2.dsc] I: copying [./fasttree_2.1.11.orig.tar.xz] I: copying [./fasttree_2.1.11-2.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Dec 17 17:00:04 2020 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fasttree_2.1.11-2.dsc: no acceptable signature found dpkg-source: info: extracting fasttree in fasttree-2.1.11 dpkg-source: info: unpacking fasttree_2.1.11.orig.tar.xz dpkg-source: info: unpacking fasttree_2.1.11-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Makefile.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1640438/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='00dd1e2c3dfb4c8e8e8993e8a994fa36' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1640438' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk/pbuilderrc_kiqj --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk/b1 --logfile b1/build.log fasttree_2.1.11-2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1640438/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20056 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 19.4 MB of archives. After unpacking 77.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-9 [96.6 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.1 [630 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Fetched 19.4 MB in 0s (97.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20056 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-9_arm64.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../23-libicu72_72.1-5_arm64.deb ... Unpacking libicu72:arm64 (72.1-5) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libicu72:arm64 (72.1-5) ... Setting up bsdextrautils (2.40.2-9) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/fasttree-2.1.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fasttree_2.1.11-2_source.changes dpkg-buildpackage: info: source package fasttree dpkg-buildpackage: info: source version 2.1.11-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/fasttree-2.1.11' dh_auto_clean make -j12 distclean make[2]: Entering directory '/build/reproducible-path/fasttree-2.1.11' rm -f fasttree make[2]: Leaving directory '/build/reproducible-path/fasttree-2.1.11' rm -f fasttreeMP make[1]: Leaving directory '/build/reproducible-path/fasttree-2.1.11' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/fasttree-2.1.11' cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fasttree-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_DOUBLE -Wl,-z,relro -Wl,-z,now -o fasttree fasttree.c -lm cc -DOPENMP -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fasttree-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_DOUBLE -Wl,-z,relro -Wl,-z,now -o fasttreeMP fasttree.c -lm fasttree.c: In function 'CreateGTR': fasttree.c:9554:10: warning: 'CreateTransitionMatrix' accessing 3200 bytes in a region of size 640 [-Wstringop-overflow=] 9554 | return(CreateTransitionMatrix(matrix,f)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fasttree.c:9554:10: note: referencing argument 1 of type 'double[20][20]' fasttree.c:9554:10: note: referencing argument 2 of type 'double[20]' fasttree.c:9557:22: note: in a call to function 'CreateTransitionMatrix' 9557 | transition_matrix_t *CreateTransitionMatrix(/*IN*/double matrix[MAXCODES][MAXCODES], | ^~~~~~~~~~~~~~~~~~~~~~ fasttree.c: In function 'CreateGTR': fasttree.c:9554:10: warning: 'CreateTransitionMatrix' accessing 3200 bytes in a region of size 640 [-Wstringop-overflow=] 9554 | return(CreateTransitionMatrix(matrix,f)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fasttree.c:9554:10: note: referencing argument 1 of type 'double[20][20]' fasttree.c:9554:10: note: referencing argument 2 of type 'double[20]' fasttree.c:9557:22: note: in a call to function 'CreateTransitionMatrix' 9557 | transition_matrix_t *CreateTransitionMatrix(/*IN*/double matrix[MAXCODES][MAXCODES], | ^~~~~~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/build/reproducible-path/fasttree-2.1.11' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs dh_auto_install --destdir=debian/fasttree/ dh_install dh_installdocs debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/fasttree-2.1.11' dh_installchangelogs changelog make[1]: Leaving directory '/build/reproducible-path/fasttree-2.1.11' dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'fasttree' in '../fasttree_2.1.11-2_arm64.deb'. dpkg-deb: building package 'fasttree-dbgsym' in '../fasttree-dbgsym_2.1.11-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../fasttree_2.1.11-2_arm64.buildinfo dpkg-genchanges --build=binary -O../fasttree_2.1.11-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1640438 and its subdirectories I: Current time: Sat Oct 26 23:19:32 -12 2024 I: pbuilder-time-stamp: 1730027972 Sun Oct 27 11:19:32 UTC 2024 I: Signing ./b1/fasttree_2.1.11-2_arm64.buildinfo as fasttree_2.1.11-2_arm64.buildinfo.asc Sun Oct 27 11:19:33 UTC 2024 I: Signed ./b1/fasttree_2.1.11-2_arm64.buildinfo as ./b1/fasttree_2.1.11-2_arm64.buildinfo.asc Sun Oct 27 11:19:33 UTC 2024 - build #1 for fasttree/unstable/arm64 on codethink02-arm64 done. Starting cleanup. All cleanup done. Sun Oct 27 11:19:33 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-M3LRMmje, removing. /srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Oct 27 11:19 b1 drwxr-xr-x 2 jenkins jenkins 4096 Oct 27 11:19 b2 -rw-r--r-- 1 jenkins jenkins 2085 Dec 17 2020 fasttree_2.1.11-2.dsc -rw------- 1 jenkins jenkins 3206 Oct 27 11:19 rbuildlog.aJDB7Xs /srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk/b1: total 652 -rw-r--r-- 1 jenkins jenkins 20333 Oct 27 11:19 build.log -rw-r--r-- 1 jenkins jenkins 401540 Oct 27 11:19 fasttree-dbgsym_2.1.11-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 34064 Oct 27 11:19 fasttree_2.1.11-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2085 Oct 27 11:19 fasttree_2.1.11-2.dsc -rw-r--r-- 1 jenkins jenkins 4858 Oct 27 11:19 fasttree_2.1.11-2_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 5740 Oct 27 11:19 fasttree_2.1.11-2_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1820 Oct 27 11:19 fasttree_2.1.11-2_arm64.changes -rw-r--r-- 1 jenkins jenkins 175108 Oct 27 11:19 fasttree_2.1.11-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 1661 Oct 27 11:19 fasttree_2.1.11-2_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk/b2: total 0 Sun Oct 27 11:19:34 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Oct 26 23:19:03 -12 2024 I: pbuilder-time-stamp: 1730027943 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fasttree_2.1.11-2.dsc] I: copying [./fasttree_2.1.11.orig.tar.xz] I: copying [./fasttree_2.1.11-2.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Dec 17 17:00:04 2020 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fasttree_2.1.11-2.dsc: no acceptable signature found dpkg-source: info: extracting fasttree in fasttree-2.1.11 dpkg-source: info: unpacking fasttree_2.1.11.orig.tar.xz dpkg-source: info: unpacking fasttree_2.1.11-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Makefile.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1640438/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='00dd1e2c3dfb4c8e8e8993e8a994fa36' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1640438' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk/pbuilderrc_kiqj --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk/b1 --logfile b1/build.log fasttree_2.1.11-2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1640438/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20056 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 19.4 MB of archives. After unpacking 77.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-9 [96.6 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.1 [630 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Fetched 19.4 MB in 0s (97.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20056 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-9_arm64.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../23-libicu72_72.1-5_arm64.deb ... Unpacking libicu72:arm64 (72.1-5) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libicu72:arm64 (72.1-5) ... Setting up bsdextrautils (2.40.2-9) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/fasttree-2.1.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fasttree_2.1.11-2_source.changes dpkg-buildpackage: info: source package fasttree dpkg-buildpackage: info: source version 2.1.11-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/fasttree-2.1.11' dh_auto_clean make -j12 distclean make[2]: Entering directory '/build/reproducible-path/fasttree-2.1.11' rm -f fasttree make[2]: Leaving directory '/build/reproducible-path/fasttree-2.1.11' rm -f fasttreeMP make[1]: Leaving directory '/build/reproducible-path/fasttree-2.1.11' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/fasttree-2.1.11' cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fasttree-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_DOUBLE -Wl,-z,relro -Wl,-z,now -o fasttree fasttree.c -lm cc -DOPENMP -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fasttree-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_DOUBLE -Wl,-z,relro -Wl,-z,now -o fasttreeMP fasttree.c -lm fasttree.c: In function 'CreateGTR': fasttree.c:9554:10: warning: 'CreateTransitionMatrix' accessing 3200 bytes in a region of size 640 [-Wstringop-overflow=] 9554 | return(CreateTransitionMatrix(matrix,f)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fasttree.c:9554:10: note: referencing argument 1 of type 'double[20][20]' fasttree.c:9554:10: note: referencing argument 2 of type 'double[20]' fasttree.c:9557:22: note: in a call to function 'CreateTransitionMatrix' 9557 | transition_matrix_t *CreateTransitionMatrix(/*IN*/double matrix[MAXCODES][MAXCODES], | ^~~~~~~~~~~~~~~~~~~~~~ fasttree.c: In function 'CreateGTR': fasttree.c:9554:10: warning: 'CreateTransitionMatrix' accessing 3200 bytes in a region of size 640 [-Wstringop-overflow=] 9554 | return(CreateTransitionMatrix(matrix,f)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fasttree.c:9554:10: note: referencing argument 1 of type 'double[20][20]' fasttree.c:9554:10: note: referencing argument 2 of type 'double[20]' fasttree.c:9557:22: note: in a call to function 'CreateTransitionMatrix' 9557 | transition_matrix_t *CreateTransitionMatrix(/*IN*/double matrix[MAXCODES][MAXCODES], | ^~~~~~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/build/reproducible-path/fasttree-2.1.11' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs dh_auto_install --destdir=debian/fasttree/ dh_install dh_installdocs debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/fasttree-2.1.11' dh_installchangelogs changelog make[1]: Leaving directory '/build/reproducible-path/fasttree-2.1.11' dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'fasttree' in '../fasttree_2.1.11-2_arm64.deb'. dpkg-deb: building package 'fasttree-dbgsym' in '../fasttree-dbgsym_2.1.11-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../fasttree_2.1.11-2_arm64.buildinfo dpkg-genchanges --build=binary -O../fasttree_2.1.11-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1640438 and its subdirectories I: Current time: Sat Oct 26 23:19:32 -12 2024 I: pbuilder-time-stamp: 1730027972 Sun Oct 27 11:19:35 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Sun Oct 27 11:19:35 UTC 2024 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Sun Oct 27 11:19:35 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Sun Oct 27 11:19:35 UTC 2024 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-yRALPz' ==================================================================================== Sat Nov 29 17:42:36 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "2 fasttree unstable /srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk 2.1.11-2" as arguments. Sat Nov 29 17:42:36 UTC 2025 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-LpXAQP2b" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Nov 29 17:42:36 UTC 2025 I: Downloading source for unstable/fasttree=2.1.11-2 Reading package lists... NOTICE: 'fasttree' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/fasttree.git Please use: git clone https://salsa.debian.org/med-team/fasttree.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 132 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main fasttree 2.1.11-2 (dsc) [2085 B] Get:2 http://deb.debian.org/debian unstable/main fasttree 2.1.11-2 (tar) [96.1 kB] Get:3 http://deb.debian.org/debian unstable/main fasttree 2.1.11-2 (diff) [34.1 kB] Fetched 132 kB in 0s (8461 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'fasttree' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/fasttree.git Please use: git clone https://salsa.debian.org/med-team/fasttree.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 132 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main fasttree 2.1.11-2 (dsc) [2085 B] Get:2 http://deb.debian.org/debian unstable/main fasttree 2.1.11-2 (tar) [96.1 kB] Get:3 http://deb.debian.org/debian unstable/main fasttree 2.1.11-2 (diff) [34.1 kB] Fetched 132 kB in 0s (8461 kB/s) Download complete and in download only mode ============================================================================= Re-Building fasttree in unstable on arm64 on codethink03-arm64 now. Date: Sat Nov 29 17:42:36 GMT 2025 Date UTC: Sat Nov 29 17:42:36 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk/pbuilderrc_CT11 + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' fasttree = debian-installer -o fasttree = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' fasttree = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk/pbuilderrc_CT11 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk/b2 --logfile b2/build.log fasttree_2.1.11-2.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Nov 30 07:42:37 +14 2025 I: pbuilder-time-stamp: 1764438157 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fasttree_2.1.11-2.dsc] I: copying [./fasttree_2.1.11.orig.tar.xz] I: copying [./fasttree_2.1.11-2.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Dec 17 17:00:04 2020 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fasttree_2.1.11-2.dsc: no acceptable signature found dpkg-source: info: extracting fasttree in fasttree-2.1.11 dpkg-source: info: unpacking fasttree_2.1.11.orig.tar.xz dpkg-source: info: unpacking fasttree_2.1.11-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Makefile.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3414535/tmp/hooks/D01_modify_environment starting debug: Running on codethink03-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Nov 29 17:42 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3414535/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3414535/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=9ef2501fa370443c99549cb1bbeb7a67 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3414535 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk/pbuilderrc_CT11 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk/b2 --logfile b2/build.log fasttree_2.1.11-2.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3414535/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20056 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 19.4 MB of archives. After unpacking 77.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-9 [96.6 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.1 [630 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Fetched 19.4 MB in 0s (79.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20056 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-9_arm64.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../23-libicu72_72.1-5_arm64.deb ... Unpacking libicu72:arm64 (72.1-5) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libicu72:arm64 (72.1-5) ... Setting up bsdextrautils (2.40.2-9) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3414535/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/3414535/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/fasttree-2.1.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../fasttree_2.1.11-2_source.changes dpkg-buildpackage: info: source package fasttree dpkg-buildpackage: info: source version 2.1.11-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/fasttree-2.1.11' dh_auto_clean make -j12 distclean make[2]: Entering directory '/build/reproducible-path/fasttree-2.1.11' rm -f fasttree make[2]: Leaving directory '/build/reproducible-path/fasttree-2.1.11' rm -f fasttreeMP make[1]: Leaving directory '/build/reproducible-path/fasttree-2.1.11' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/fasttree-2.1.11' cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fasttree-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_DOUBLE -Wl,-z,relro -Wl,-z,now -o fasttree fasttree.c -lm cc -DOPENMP -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fasttree-2.1.11=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DUSE_DOUBLE -Wl,-z,relro -Wl,-z,now -o fasttreeMP fasttree.c -lm fasttree.c: In function 'CreateGTR': fasttree.c:9554:10: warning: 'CreateTransitionMatrix' accessing 3200 bytes in a region of size 640 [-Wstringop-overflow=] 9554 | return(CreateTransitionMatrix(matrix,f)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fasttree.c:9554:10: note: referencing argument 1 of type 'double[20][20]' fasttree.c:9554:10: note: referencing argument 2 of type 'double[20]' fasttree.c:9557:22: note: in a call to function 'CreateTransitionMatrix' 9557 | transition_matrix_t *CreateTransitionMatrix(/*IN*/double matrix[MAXCODES][MAXCODES], | ^~~~~~~~~~~~~~~~~~~~~~ fasttree.c: In function 'CreateGTR': fasttree.c:9554:10: warning: 'CreateTransitionMatrix' accessing 3200 bytes in a region of size 640 [-Wstringop-overflow=] 9554 | return(CreateTransitionMatrix(matrix,f)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fasttree.c:9554:10: note: referencing argument 1 of type 'double[20][20]' fasttree.c:9554:10: note: referencing argument 2 of type 'double[20]' fasttree.c:9557:22: note: in a call to function 'CreateTransitionMatrix' 9557 | transition_matrix_t *CreateTransitionMatrix(/*IN*/double matrix[MAXCODES][MAXCODES], | ^~~~~~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/build/reproducible-path/fasttree-2.1.11' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs dh_auto_install --destdir=debian/fasttree/ dh_install dh_installdocs debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/fasttree-2.1.11' dh_installchangelogs changelog make[1]: Leaving directory '/build/reproducible-path/fasttree-2.1.11' dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'fasttree' in '../fasttree_2.1.11-2_arm64.deb'. dpkg-deb: building package 'fasttree-dbgsym' in '../fasttree-dbgsym_2.1.11-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../fasttree_2.1.11-2_arm64.buildinfo dpkg-genchanges --build=binary -O../fasttree_2.1.11-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3414535/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3414535/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3414535 and its subdirectories I: Current time: Sun Nov 30 07:43:28 +14 2025 I: pbuilder-time-stamp: 1764438208 + false + set +x Sat Nov 29 17:43:28 UTC 2025 I: Signing ./b2/fasttree_2.1.11-2_arm64.buildinfo as fasttree_2.1.11-2_arm64.buildinfo.asc Sat Nov 29 17:43:28 UTC 2025 I: Signed ./b2/fasttree_2.1.11-2_arm64.buildinfo as ./b2/fasttree_2.1.11-2_arm64.buildinfo.asc Sat Nov 29 17:43:28 UTC 2025 - build #2 for fasttree/unstable/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Sat Nov 29 17:43:28 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-LpXAQP2b, removing. /srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk: total 36 drwxr-xr-x 2 jenkins jenkins 4096 Oct 27 11:19 b1 drwxr-xr-x 2 jenkins jenkins 4096 Oct 27 11:20 b2 -rw-r--r-- 1 jenkins jenkins 2085 Dec 17 2020 fasttree_2.1.11-2.dsc -rw------- 1 jenkins jenkins 23840 Oct 27 11:19 rbuildlog.aJDB7Xs /srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk/b1: total 660 -rw-r--r-- 1 jenkins jenkins 20333 Oct 27 11:19 build.log -rw-r--r-- 1 jenkins jenkins 401540 Oct 27 11:19 fasttree-dbgsym_2.1.11-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 34064 Oct 27 11:19 fasttree_2.1.11-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2085 Oct 27 11:19 fasttree_2.1.11-2.dsc -rw-r--r-- 1 jenkins jenkins 4858 Oct 27 11:19 fasttree_2.1.11-2_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 5740 Oct 27 11:19 fasttree_2.1.11-2_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1820 Oct 27 11:19 fasttree_2.1.11-2_arm64.changes -rw-r--r-- 1 jenkins jenkins 175108 Oct 27 11:19 fasttree_2.1.11-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 1661 Oct 27 11:19 fasttree_2.1.11-2_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk/b2: total 656 -rw-r--r-- 1 jenkins jenkins 22278 Oct 27 11:20 build.log -rw-r--r-- 1 jenkins jenkins 401540 Oct 27 11:20 fasttree-dbgsym_2.1.11-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 34064 Oct 27 11:20 fasttree_2.1.11-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2085 Oct 27 11:20 fasttree_2.1.11-2.dsc -rw-r--r-- 1 jenkins jenkins 4858 Oct 27 11:20 fasttree_2.1.11-2_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 5740 Oct 27 11:20 fasttree_2.1.11-2_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1820 Oct 27 11:20 fasttree_2.1.11-2_arm64.changes -rw-r--r-- 1 jenkins jenkins 175108 Oct 27 11:20 fasttree_2.1.11-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 1661 Oct 27 11:20 fasttree_2.1.11-2_source.changes Sun Oct 27 11:20:30 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Sun Oct 27 11:20:31 UTC 2024 I: fasttree_2.1.11-2_arm64.changes: Format: 1.8 Date: Thu, 17 Dec 2020 17:44:13 +0100 Source: fasttree Binary: fasttree fasttree-dbgsym Architecture: arm64 Version: 2.1.11-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: fasttree - phylogenetic trees from alignments of nucleotide or protein seque Changes: fasttree (2.1.11-2) unstable; urgency=medium . * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Trim trailing whitespace. * Set field Upstream-Contact in debian/copyright. * Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * watch file standard 4 (routine-update) Checksums-Sha1: 647aa9514549dd8a3a0ed148057dbbe7a980f28b 401540 fasttree-dbgsym_2.1.11-2_arm64.deb f88df15952b82613012eee77b3ce6e2e06ada8d7 4858 fasttree_2.1.11-2_arm64.buildinfo b0938fc6e340a99367b8160621c7075f52e6177d 175108 fasttree_2.1.11-2_arm64.deb Checksums-Sha256: 45a501af8a2d7f0669ee67155a87f5b3437c94ee9e74eb7efa53e66727109ef2 401540 fasttree-dbgsym_2.1.11-2_arm64.deb a6e3092757af0c1ad0f19daadd9a3ee6db3db155e959a6e3e7bd48ceb586d498 4858 fasttree_2.1.11-2_arm64.buildinfo 5910c4677e6829c21831f7ff989dc63603e6a392cc5fabe24e709ed11f7962ab 175108 fasttree_2.1.11-2_arm64.deb Files: 6a95b2b4f7eed7e03357aae96708520e 401540 debug optional fasttree-dbgsym_2.1.11-2_arm64.deb 6e1620ed7aba5d6b990c89d02d2d6ebf 4858 science optional fasttree_2.1.11-2_arm64.buildinfo b9d81be79b90593b9a3b5fe5a530230a 175108 science optional fasttree_2.1.11-2_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/fasttree_2.1.11-2.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/fasttree_2.1.11-2.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/fasttree_2.1.11-2.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/fasttree_2.1.11-2.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/arm64/fasttree_2.1.11-2_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/fasttree_2.1.11-2.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-10-27 11:19:34.008634227 +0000 +++ b2/build.log 2024-10-27 11:20:30.266636259 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Oct 26 23:19:03 -12 2024 -I: pbuilder-time-stamp: 1730027943 +I: Current time: Sun Nov 30 07:42:37 +14 2025 +I: pbuilder-time-stamp: 1764438157 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -28,52 +28,84 @@ dpkg-source: info: applying Makefile.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1640438/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3414535/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 29 17:42 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3414535/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3414535/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='00dd1e2c3dfb4c8e8e8993e8a994fa36' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1640438' - PS1='# ' - PS2='> ' + INVOCATION_ID=9ef2501fa370443c99549cb1bbeb7a67 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3414535 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk/pbuilderrc_kiqj --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk/b1 --logfile b1/build.log fasttree_2.1.11-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk/pbuilderrc_CT11 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk/b2 --logfile b2/build.log fasttree_2.1.11-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink02-arm64 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1640438/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3414535/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -138,7 +170,7 @@ Get: 27 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] -Fetched 19.4 MB in 0s (97.3 MB/s) +Fetched 19.4 MB in 0s (79.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20056 files and directories currently installed.) @@ -269,7 +301,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/fasttree-2.1.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fasttree_2.1.11-2_source.changes +I: user script /srv/workspace/pbuilder/3414535/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3414535/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/fasttree-2.1.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../fasttree_2.1.11-2_source.changes dpkg-buildpackage: info: source package fasttree dpkg-buildpackage: info: source version 2.1.11-2 dpkg-buildpackage: info: source distribution unstable @@ -356,12 +392,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3414535/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3414535/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1640438 and its subdirectories -I: Current time: Sat Oct 26 23:19:32 -12 2024 -I: pbuilder-time-stamp: 1730027972 +I: removing directory /srv/workspace/pbuilder/3414535 and its subdirectories +I: Current time: Sun Nov 30 07:43:28 +14 2025 +I: pbuilder-time-stamp: 1764438208 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/fasttree_2.1.11-2.diff: 66.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/fasttree_2.1.11-2.diff.gz b2/build.log: 73.8% -- replaced with stdout Compressing the 1st log... b1/build.log: 74.7% -- replaced with stdout Sun Oct 27 11:20:32 UTC 2024 I: diffoscope 282 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_fasttree_unstable_arm64_1730028032 + touch /var/log/reproducible-builds/diffoscope_stamp_fasttree_unstable_arm64_1730028032 + RESULT=0 + systemd-run '--description=diffoscope on fasttree/2.1.11-2 in unstable/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_7-41809 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk --run-session -c jenkins-reproducible-unstable-diffoscope-4e4974f4-6992-49e4-a722-70167cbf5918 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk/dbd-tmp-JFGr59E ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk/fasttree_2.1.11-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk/fasttree_2.1.11-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk/fasttree_2.1.11-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk/b1/fasttree_2.1.11-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk/b2/fasttree_2.1.11-2_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_7-41809.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk/fasttree_2.1.11-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk/fasttree_2.1.11-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk/fasttree_2.1.11-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk/b1/fasttree_2.1.11-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.6G2Nq5wk/b2/fasttree_2.1.11-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.457s) 0.456s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.026s) 0.026s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 851ms CPU time consumed: 845ms __ _ _ / _| __ _ ___| |_| |_ _ __ ___ ___ | |_ / _` / __| __| __| '__/ _ \/ _ \ | _| (_| \__ \ |_| |_| | | __/ __/ |_| \__,_|___/\__|\__|_| \___|\___| Sun Oct 27 11:20:33 UTC 2024 I: diffoscope 282 found no differences in the changes files, and a .buildinfo file also exists. Sun Oct 27 11:20:33 UTC 2024 I: fasttree from unstable built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-10-27 11:20:34] INFO: Starting at 2024-10-27 11:20:34.586618 [2024-10-27 11:20:34] INFO: Generating the pages of 1 package(s) [2024-10-27 11:20:34] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/arm64/fasttree didn't produce a buildlog, even though it has been built. [2024-10-27 11:20:35] INFO: Finished at 2024-10-27 11:20:35.144475, took: 0:00:00.557866 Sun Oct 27 11:20:35 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/arm64/fasttree.html Sun Oct 27 11:20:35 UTC 2024 I: Submitting .buildinfo files to external archives: Sun Oct 27 11:20:35 UTC 2024 I: Submitting 8.0K b1/fasttree_2.1.11-2_arm64.buildinfo.asc https://buildinfo.debian.net/f88df15952b82613012eee77b3ce6e2e06ada8d7/fasttree_2.1.11-2_arm64 Sun Oct 27 11:20:36 UTC 2024 I: Submitting 8.0K b2/fasttree_2.1.11-2_arm64.buildinfo.asc https://buildinfo.debian.net/7b58ce1ee1862aae84693553193f12f55de60992/fasttree_2.1.11-2_arm64 Sun Oct 27 11:20:36 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Oct 27 11:20:36 UTC 2024 I: Done submitting .buildinfo files. Sun Oct 27 11:20:36 UTC 2024 I: Removing signed fasttree_2.1.11-2_arm64.buildinfo.asc files: removed './b1/fasttree_2.1.11-2_arm64.buildinfo.asc' removed './b2/fasttree_2.1.11-2_arm64.buildinfo.asc' 1730028036 arm64 unstable fasttree Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/fasttree_2.1.11-2.rbuild.log: 70.8% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/fasttree_2.1.11-2.rbuild.log.gz [2024-10-27 11:20:37] INFO: Starting at 2024-10-27 11:20:37.176686 [2024-10-27 11:20:37] INFO: Generating the pages of 1 package(s) [2024-10-27 11:20:37] INFO: Finished at 2024-10-27 11:20:37.934798, took: 0:00:00.758121 All cleanup done. Sun Oct 27 11:20:38 UTC 2024 - total duration: 0h 1m 58s. Sun Oct 27 11:20:38 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-OKChTqyY, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 2min 2.232s CPU time consumed: 9.036s