Running as unit: rb-build-arm64_7-41881.service ==================================================================================== Sun Oct 27 14:33:05 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_7) on jenkins, called using "codethink02-arm64 codethink03-arm64" as arguments. Sun Oct 27 14:33:05 UTC 2024 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-4xkBgx5K" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Oct 27 14:33:05 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink02-arm64.debian.net is marked as down. Sun Oct 27 14:33:05 UTC 2024 - checking via ssh if codethink02-arm64.debian.net is up. removed '/tmp/read-only-fs-test-nX91lt' Sun Oct 27 14:33:06 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Sun Oct 27 14:33:06 UTC 2024 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-3S0PL9' ok, let's check if sweed is building anywhere yet… ok, sweed is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of sweed in trixie on arm64 on jenkins now. 1st build will be done on codethink02-arm64.debian.net. 2nd build will be done on codethink03-arm64.debian.net. ============================================================================= Sun Oct 27 14:33:24 UTC 2024 I: starting to build sweed/trixie/arm64 on jenkins on '2024-10-27 14:33' Sun Oct 27 14:33:24 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_7/41881/console.log 1730039604 arm64 trixie sweed Sun Oct 27 14:33:24 UTC 2024 I: Downloading source for trixie/sweed=3.2.1+dfsg-5 --2024-10-27 14:33:25-- http://deb.debian.org/debian/pool/main/s/sweed/sweed_3.2.1%2bdfsg-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1978 (1.9K) [text/prs.lines.tag] Saving to: ‘sweed_3.2.1+dfsg-5.dsc’ 0K . 100% 258M=0s 2024-10-27 14:33:25 (258 MB/s) - ‘sweed_3.2.1+dfsg-5.dsc’ saved [1978/1978] --2024-10-27 14:33:25-- http://deb.debian.org/debian/pool/main/s/sweed/sweed_3.2.1%2bdfsg-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1978 (1.9K) [text/prs.lines.tag] Saving to: ‘sweed_3.2.1+dfsg-5.dsc’ 0K . 100% 258M=0s 2024-10-27 14:33:25 (258 MB/s) - ‘sweed_3.2.1+dfsg-5.dsc’ saved [1978/1978] Sun Oct 27 14:33:25 UTC 2024 I: sweed_3.2.1+dfsg-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: sweed Binary: sweed Architecture: any Version: 3.2.1+dfsg-5 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://sco.h-its.org/exelixis/web/software/sweed/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/sweed Vcs-Git: https://salsa.debian.org/med-team/sweed.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: sweed deb science optional arch=any Checksums-Sha1: fb8c433ac9b860a66bcbd3beab1f7b89ddb902e8 62064 sweed_3.2.1+dfsg.orig.tar.xz 19f4dc4dd4341e07ac13b455f4572dbcfbd30d2a 7524 sweed_3.2.1+dfsg-5.debian.tar.xz Checksums-Sha256: d93ca71debbb3d3c9b09aa9454ca594b25ab2e0eaaed156ade392cde5f00c2b3 62064 sweed_3.2.1+dfsg.orig.tar.xz b20406ef08aacf293d8b6518d2ed6bd861b52b0d022be6b42d9557280a3ad70b 7524 sweed_3.2.1+dfsg-5.debian.tar.xz Files: abce23d90404a755920a28eef53b2a6b 62064 sweed_3.2.1+dfsg.orig.tar.xz 1be267c2b63180209b45db8ea9fd7210 7524 sweed_3.2.1+dfsg-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl9plvMRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHVDQ/+NDck2oTfDM48CPsam2Ws6mTPZ9LJSNdt Trk7GasEIb2QlJthAI/4Q9CY1UHb2qYFEePp4TwLeqq3jhQBJVS2PrP1OKYceL5Z VR8CDtCzvYoK3ue0w/B/aB+sG8yRo08kgKIN0gHjW1biQGJyR1ARvy72IHDcQ+jq gHci4IA3zkkTKAnw8Q+V3qY1puQBxt7wA+qiH0ahcN2xf68NIxHPUOdLQrdK52kL VH8G9NlGjx/GFo5f5+1m9AV2ZpOQLhhl+szn9w7NhRbTgYr7pfbJAznidA933zQ0 H7SI0uEw+/36J8j2DfLS6lgmMwPvprViUH98kwcL5HCzyqkhQXvjn2+HLYJNhYy2 92gGFHKO+8lY8fjDLBA49GsGOl6GU1+0zdzINfMyUHa8yMy46Fb1AYhbJg7C7Nni arNmbxF6p7iw0J1P7vC/z4nhS9RY5uUnlsAcYtUMxpezMylE1456R3xQ1MeOzR/6 fnhcefGjgu42kApiUg1zeAbGBWw+fNTDesjkSJP9/Uxaqe6xThfg3uUEBfWj1MtU jl7NjAOOzyc35SDtjzuzzQW4ZxMKlbQDhyy0s/zqOVrcbT+hJu7yLofobRIZ6dW6 tjY93T/GZ3/3Rd0ZgUuGZ2f/gkP5SGBST8WAOlsbT8aXlw8VDUht5rfrFCu5atAw USQuZnqhLZM= =IZU4 -----END PGP SIGNATURE----- Sun Oct 27 14:33:25 UTC 2024 I: Checking whether the package is not for us Sun Oct 27 14:33:25 UTC 2024 I: Starting 1st build on remote node codethink02-arm64.debian.net. Sun Oct 27 14:33:25 UTC 2024 I: Preparing to do remote build '1' on codethink02-arm64.debian.net. Sun Oct 27 14:33:25 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink02-arm64.debian.net is marked as down. Sun Oct 27 14:33:25 UTC 2024 - checking via ssh if codethink02-arm64.debian.net is up. removed '/tmp/read-only-fs-test-DOuF98' ==================================================================================== Sun Oct 27 14:33:26 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink02-arm64, called using "1 sweed trixie /srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW 3.2.1+dfsg-5" as arguments. Sun Oct 27 14:33:26 UTC 2024 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-Qa8w0Wea" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Oct 27 14:33:26 UTC 2024 I: Downloading source for trixie/sweed=3.2.1+dfsg-5 Reading package lists... NOTICE: 'sweed' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/sweed.git Please use: git clone https://salsa.debian.org/med-team/sweed.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 71.6 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main sweed 3.2.1+dfsg-5 (dsc) [1978 B] Get:2 http://deb.debian.org/debian trixie/main sweed 3.2.1+dfsg-5 (tar) [62.1 kB] Get:3 http://deb.debian.org/debian trixie/main sweed 3.2.1+dfsg-5 (diff) [7524 B] Fetched 71.6 kB in 0s (855 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'sweed' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/sweed.git Please use: git clone https://salsa.debian.org/med-team/sweed.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 71.6 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main sweed 3.2.1+dfsg-5 (dsc) [1978 B] Get:2 http://deb.debian.org/debian trixie/main sweed 3.2.1+dfsg-5 (tar) [62.1 kB] Get:3 http://deb.debian.org/debian trixie/main sweed 3.2.1+dfsg-5 (diff) [7524 B] Fetched 71.6 kB in 0s (855 kB/s) Download complete and in download only mode ============================================================================= Building sweed in trixie on arm64 on codethink02-arm64 now. Date: Sun Oct 27 14:33:27 GMT 2024 Date UTC: Sun Oct 27 14:33:27 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Oct 27 02:33:27 -12 2024 I: pbuilder-time-stamp: 1730039607 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [sweed_3.2.1+dfsg-5.dsc] I: copying [./sweed_3.2.1+dfsg.orig.tar.xz] I: copying [./sweed_3.2.1+dfsg-5.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Sep 22 06:17:23 2020 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./sweed_3.2.1+dfsg-5.dsc: no acceptable signature found dpkg-source: info: extracting sweed in sweed-3.2.1+dfsg dpkg-source: info: unpacking sweed_3.2.1+dfsg.orig.tar.xz dpkg-source: info: unpacking sweed_3.2.1+dfsg-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc10.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying arm64.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/905224/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='ea26f2464a104af7b042a791f2322900' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='905224' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW/pbuilderrc_JcGG --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW/b1 --logfile b1/build.log sweed_3.2.1+dfsg-5.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/905224/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20057 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 19.4 MB of archives. After unpacking 77.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-9 [96.6 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-2 [188 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.1 [630 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Fetched 19.4 MB in 0s (65.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20057 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-9_arm64.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.191-2_arm64.deb ... Unpacking libelf1t64:arm64 (0.191-2) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../23-libicu72_72.1-5_arm64.deb ... Unpacking libicu72:arm64 (72.1-5) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libicu72:arm64 (72.1-5) ... Setting up bsdextrautils (2.40.2-9) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:arm64 (0.191-2) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/sweed-3.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../sweed_3.2.1+dfsg-5_source.changes dpkg-buildpackage: info: source package sweed dpkg-buildpackage: info: source version 3.2.1+dfsg-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Helmut Grohne dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/sweed-3.2.1+dfsg' dh_auto_clean rm -f *.o *~ SweeD make[1]: Leaving directory '/build/reproducible-path/sweed-3.2.1+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/sweed-3.2.1+dfsg' dh_auto_build --buildsystem=makefile -- -f Makefile.gcc make -j12 "INSTALL=install --strip-program=true" -f Makefile.gcc make[2]: Entering directory '/build/reproducible-path/sweed-3.2.1+dfsg' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sweed-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -g -c SweeD.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sweed-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -g -c SweeD_Input.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sweed-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -g -c SweeD_Kernel.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sweed-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -g -c SweeD_SFS.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sweed-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -g -c SweeD_CLR.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sweed-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -g -c SweeD_BFGS.c SweeD_Kernel.c: In function 'getAlpha': SweeD_Kernel.c:383:26: warning: 'lik' may be used uninitialized [-Wmaybe-uninitialized] 383 | *likelihood = lik[maxPos]; | ~~~^~~~~~~~ SweeD_Kernel.c:340:15: note: 'lik' declared here 340 | t_sfs lik[LOCALGRIDSIZE]; | ^~~ SweeD_Input.c: In function 'findFirstAlignment': SweeD_Input.c:1009:17: warning: 'strncpy' specified bound 100 equals destination size [-Wstringop-truncation] 1009 | strncpy(VCF_alignment_name, *string, MAX_CHROM_NAME_VCF); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SweeD_Input.c: In function 'readLine_VCF': SweeD_Input.c:2672:41: warning: 'strncpy' specified bound 100 equals destination size [-Wstringop-truncation] 2672 | strncpy(VCF_alignment_name, *string, MAX_CHROM_NAME_VCF); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sweed-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -g -o SweeD SweeD.o SweeD_Input.o SweeD_Kernel.o SweeD_SFS.o SweeD_CLR.o SweeD_BFGS.o -lm -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/sweed-3.2.1+dfsg' make[1]: Leaving directory '/build/reproducible-path/sweed-3.2.1+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/sweed/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'sweed-dbgsym' in '../sweed-dbgsym_3.2.1+dfsg-5_arm64.deb'. dpkg-deb: building package 'sweed' in '../sweed_3.2.1+dfsg-5_arm64.deb'. dpkg-genbuildinfo --build=binary -O../sweed_3.2.1+dfsg-5_arm64.buildinfo dpkg-genchanges --build=binary -O../sweed_3.2.1+dfsg-5_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/905224 and its subdirectories I: Current time: Sun Oct 27 02:33:51 -12 2024 I: pbuilder-time-stamp: 1730039631 Sun Oct 27 14:33:51 UTC 2024 I: Signing ./b1/sweed_3.2.1+dfsg-5_arm64.buildinfo as sweed_3.2.1+dfsg-5_arm64.buildinfo.asc Sun Oct 27 14:33:51 UTC 2024 I: Signed ./b1/sweed_3.2.1+dfsg-5_arm64.buildinfo as ./b1/sweed_3.2.1+dfsg-5_arm64.buildinfo.asc Sun Oct 27 14:33:51 UTC 2024 - build #1 for sweed/trixie/arm64 on codethink02-arm64 done. Starting cleanup. All cleanup done. Sun Oct 27 14:33:51 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-Qa8w0Wea, removing. /srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Oct 27 14:33 b1 drwxr-xr-x 2 jenkins jenkins 4096 Oct 27 14:33 b2 -rw------- 1 jenkins jenkins 3096 Oct 27 14:33 rbuildlog.qR1b3lF -rw-r--r-- 1 jenkins jenkins 1978 Sep 22 2020 sweed_3.2.1+dfsg-5.dsc /srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW/b1: total 232 -rw-r--r-- 1 jenkins jenkins 21158 Oct 27 14:33 build.log -rw-r--r-- 1 jenkins jenkins 113060 Oct 27 14:33 sweed-dbgsym_3.2.1+dfsg-5_arm64.deb -rw-r--r-- 1 jenkins jenkins 7524 Oct 27 14:33 sweed_3.2.1+dfsg-5.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1978 Oct 27 14:33 sweed_3.2.1+dfsg-5.dsc -rw-r--r-- 1 jenkins jenkins 4862 Oct 27 14:33 sweed_3.2.1+dfsg-5_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 5744 Oct 27 14:33 sweed_3.2.1+dfsg-5_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1423 Oct 27 14:33 sweed_3.2.1+dfsg-5_arm64.changes -rw-r--r-- 1 jenkins jenkins 59148 Oct 27 14:33 sweed_3.2.1+dfsg-5_arm64.deb -rw-r--r-- 1 jenkins jenkins 1284 Oct 27 14:33 sweed_3.2.1+dfsg-5_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW/b2: total 0 Sun Oct 27 14:33:52 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Oct 27 02:33:27 -12 2024 I: pbuilder-time-stamp: 1730039607 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [sweed_3.2.1+dfsg-5.dsc] I: copying [./sweed_3.2.1+dfsg.orig.tar.xz] I: copying [./sweed_3.2.1+dfsg-5.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Sep 22 06:17:23 2020 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./sweed_3.2.1+dfsg-5.dsc: no acceptable signature found dpkg-source: info: extracting sweed in sweed-3.2.1+dfsg dpkg-source: info: unpacking sweed_3.2.1+dfsg.orig.tar.xz dpkg-source: info: unpacking sweed_3.2.1+dfsg-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc10.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying arm64.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/905224/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='ea26f2464a104af7b042a791f2322900' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='905224' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW/pbuilderrc_JcGG --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW/b1 --logfile b1/build.log sweed_3.2.1+dfsg-5.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/905224/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20057 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 19.4 MB of archives. After unpacking 77.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-9 [96.6 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-2 [188 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.1 [630 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Fetched 19.4 MB in 0s (65.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20057 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-9_arm64.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.191-2_arm64.deb ... Unpacking libelf1t64:arm64 (0.191-2) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../23-libicu72_72.1-5_arm64.deb ... Unpacking libicu72:arm64 (72.1-5) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libicu72:arm64 (72.1-5) ... Setting up bsdextrautils (2.40.2-9) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:arm64 (0.191-2) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/sweed-3.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../sweed_3.2.1+dfsg-5_source.changes dpkg-buildpackage: info: source package sweed dpkg-buildpackage: info: source version 3.2.1+dfsg-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Helmut Grohne dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/sweed-3.2.1+dfsg' dh_auto_clean rm -f *.o *~ SweeD make[1]: Leaving directory '/build/reproducible-path/sweed-3.2.1+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/sweed-3.2.1+dfsg' dh_auto_build --buildsystem=makefile -- -f Makefile.gcc make -j12 "INSTALL=install --strip-program=true" -f Makefile.gcc make[2]: Entering directory '/build/reproducible-path/sweed-3.2.1+dfsg' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sweed-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -g -c SweeD.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sweed-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -g -c SweeD_Input.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sweed-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -g -c SweeD_Kernel.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sweed-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -g -c SweeD_SFS.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sweed-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -g -c SweeD_CLR.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sweed-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -g -c SweeD_BFGS.c SweeD_Kernel.c: In function 'getAlpha': SweeD_Kernel.c:383:26: warning: 'lik' may be used uninitialized [-Wmaybe-uninitialized] 383 | *likelihood = lik[maxPos]; | ~~~^~~~~~~~ SweeD_Kernel.c:340:15: note: 'lik' declared here 340 | t_sfs lik[LOCALGRIDSIZE]; | ^~~ SweeD_Input.c: In function 'findFirstAlignment': SweeD_Input.c:1009:17: warning: 'strncpy' specified bound 100 equals destination size [-Wstringop-truncation] 1009 | strncpy(VCF_alignment_name, *string, MAX_CHROM_NAME_VCF); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SweeD_Input.c: In function 'readLine_VCF': SweeD_Input.c:2672:41: warning: 'strncpy' specified bound 100 equals destination size [-Wstringop-truncation] 2672 | strncpy(VCF_alignment_name, *string, MAX_CHROM_NAME_VCF); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sweed-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -g -o SweeD SweeD.o SweeD_Input.o SweeD_Kernel.o SweeD_SFS.o SweeD_CLR.o SweeD_BFGS.o -lm -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/sweed-3.2.1+dfsg' make[1]: Leaving directory '/build/reproducible-path/sweed-3.2.1+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/sweed/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'sweed-dbgsym' in '../sweed-dbgsym_3.2.1+dfsg-5_arm64.deb'. dpkg-deb: building package 'sweed' in '../sweed_3.2.1+dfsg-5_arm64.deb'. dpkg-genbuildinfo --build=binary -O../sweed_3.2.1+dfsg-5_arm64.buildinfo dpkg-genchanges --build=binary -O../sweed_3.2.1+dfsg-5_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/905224 and its subdirectories I: Current time: Sun Oct 27 02:33:51 -12 2024 I: pbuilder-time-stamp: 1730039631 Sun Oct 27 14:33:53 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Sun Oct 27 14:33:53 UTC 2024 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Sun Oct 27 14:33:53 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Sun Oct 27 14:33:53 UTC 2024 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-SAnFal' ==================================================================================== Sat Nov 29 20:56:54 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "2 sweed trixie /srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW 3.2.1+dfsg-5" as arguments. Sat Nov 29 20:56:54 UTC 2025 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-XL7oFAIM" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Nov 29 20:56:54 UTC 2025 I: Downloading source for trixie/sweed=3.2.1+dfsg-5 Reading package lists... NOTICE: 'sweed' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/sweed.git Please use: git clone https://salsa.debian.org/med-team/sweed.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 71.6 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main sweed 3.2.1+dfsg-5 (dsc) [1978 B] Get:2 http://deb.debian.org/debian trixie/main sweed 3.2.1+dfsg-5 (tar) [62.1 kB] Get:3 http://deb.debian.org/debian trixie/main sweed 3.2.1+dfsg-5 (diff) [7524 B] Fetched 71.6 kB in 0s (3895 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'sweed' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/sweed.git Please use: git clone https://salsa.debian.org/med-team/sweed.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 71.6 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main sweed 3.2.1+dfsg-5 (dsc) [1978 B] Get:2 http://deb.debian.org/debian trixie/main sweed 3.2.1+dfsg-5 (tar) [62.1 kB] Get:3 http://deb.debian.org/debian trixie/main sweed 3.2.1+dfsg-5 (diff) [7524 B] Fetched 71.6 kB in 0s (3895 kB/s) Download complete and in download only mode ============================================================================= Re-Building sweed in trixie on arm64 on codethink03-arm64 now. Date: Sat Nov 29 20:56:54 GMT 2025 Date UTC: Sat Nov 29 20:56:54 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW/pbuilderrc_Wqok + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' sweed = debian-installer -o sweed = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' sweed = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW/pbuilderrc_Wqok --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW/b2 --logfile b2/build.log sweed_3.2.1+dfsg-5.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Nov 30 10:56:55 +14 2025 I: pbuilder-time-stamp: 1764449815 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [sweed_3.2.1+dfsg-5.dsc] I: copying [./sweed_3.2.1+dfsg.orig.tar.xz] I: copying [./sweed_3.2.1+dfsg-5.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Sep 22 06:17:23 2020 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./sweed_3.2.1+dfsg-5.dsc: no acceptable signature found dpkg-source: info: extracting sweed in sweed-3.2.1+dfsg dpkg-source: info: unpacking sweed_3.2.1+dfsg.orig.tar.xz dpkg-source: info: unpacking sweed_3.2.1+dfsg-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc10.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying arm64.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3090271/tmp/hooks/D01_modify_environment starting debug: Running on codethink03-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Nov 29 20:57 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3090271/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3090271/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=60ff649da438412e866c1dde09b833ae LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3090271 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW/pbuilderrc_Wqok --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW/b2 --logfile b2/build.log sweed_3.2.1+dfsg-5.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3090271/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20057 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 19.4 MB of archives. After unpacking 77.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-9 [96.6 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-2 [188 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.1 [630 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Fetched 19.4 MB in 0s (135 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20057 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-9_arm64.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.191-2_arm64.deb ... Unpacking libelf1t64:arm64 (0.191-2) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../23-libicu72_72.1-5_arm64.deb ... Unpacking libicu72:arm64 (72.1-5) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libicu72:arm64 (72.1-5) ... Setting up bsdextrautils (2.40.2-9) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:arm64 (0.191-2) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3090271/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/3090271/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/sweed-3.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../sweed_3.2.1+dfsg-5_source.changes dpkg-buildpackage: info: source package sweed dpkg-buildpackage: info: source version 3.2.1+dfsg-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Helmut Grohne dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/sweed-3.2.1+dfsg' dh_auto_clean rm -f *.o *~ SweeD make[1]: Leaving directory '/build/reproducible-path/sweed-3.2.1+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/sweed-3.2.1+dfsg' dh_auto_build --buildsystem=makefile -- -f Makefile.gcc make -j12 "INSTALL=install --strip-program=true" -f Makefile.gcc make[2]: Entering directory '/build/reproducible-path/sweed-3.2.1+dfsg' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sweed-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -g -c SweeD.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sweed-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -g -c SweeD_Input.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sweed-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -g -c SweeD_Kernel.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sweed-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -g -c SweeD_SFS.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sweed-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -g -c SweeD_CLR.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sweed-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -g -c SweeD_BFGS.c SweeD_Kernel.c: In function 'getAlpha': SweeD_Kernel.c:383:26: warning: 'lik' may be used uninitialized [-Wmaybe-uninitialized] 383 | *likelihood = lik[maxPos]; | ~~~^~~~~~~~ SweeD_Kernel.c:340:15: note: 'lik' declared here 340 | t_sfs lik[LOCALGRIDSIZE]; | ^~~ SweeD_Input.c: In function 'findFirstAlignment': SweeD_Input.c:1009:17: warning: 'strncpy' specified bound 100 equals destination size [-Wstringop-truncation] 1009 | strncpy(VCF_alignment_name, *string, MAX_CHROM_NAME_VCF); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SweeD_Input.c: In function 'readLine_VCF': SweeD_Input.c:2672:41: warning: 'strncpy' specified bound 100 equals destination size [-Wstringop-truncation] 2672 | strncpy(VCF_alignment_name, *string, MAX_CHROM_NAME_VCF); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sweed-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -g -o SweeD SweeD.o SweeD_Input.o SweeD_Kernel.o SweeD_SFS.o SweeD_CLR.o SweeD_BFGS.o -lm -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/sweed-3.2.1+dfsg' make[1]: Leaving directory '/build/reproducible-path/sweed-3.2.1+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/sweed/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'sweed' in '../sweed_3.2.1+dfsg-5_arm64.deb'. dpkg-deb: building package 'sweed-dbgsym' in '../sweed-dbgsym_3.2.1+dfsg-5_arm64.deb'. dpkg-genbuildinfo --build=binary -O../sweed_3.2.1+dfsg-5_arm64.buildinfo dpkg-genchanges --build=binary -O../sweed_3.2.1+dfsg-5_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3090271/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3090271/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3090271 and its subdirectories I: Current time: Sun Nov 30 10:57:25 +14 2025 I: pbuilder-time-stamp: 1764449845 + false + set +x Sat Nov 29 20:57:25 UTC 2025 I: Signing ./b2/sweed_3.2.1+dfsg-5_arm64.buildinfo as sweed_3.2.1+dfsg-5_arm64.buildinfo.asc Sat Nov 29 20:57:25 UTC 2025 I: Signed ./b2/sweed_3.2.1+dfsg-5_arm64.buildinfo as ./b2/sweed_3.2.1+dfsg-5_arm64.buildinfo.asc Sat Nov 29 20:57:25 UTC 2025 - build #2 for sweed/trixie/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Sat Nov 29 20:57:25 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-XL7oFAIM, removing. /srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW: total 36 drwxr-xr-x 2 jenkins jenkins 4096 Oct 27 14:33 b1 drwxr-xr-x 2 jenkins jenkins 4096 Oct 27 14:34 b2 -rw------- 1 jenkins jenkins 24555 Oct 27 14:33 rbuildlog.qR1b3lF -rw-r--r-- 1 jenkins jenkins 1978 Sep 22 2020 sweed_3.2.1+dfsg-5.dsc /srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW/b1: total 240 -rw-r--r-- 1 jenkins jenkins 21158 Oct 27 14:33 build.log -rw-r--r-- 1 jenkins jenkins 113060 Oct 27 14:33 sweed-dbgsym_3.2.1+dfsg-5_arm64.deb -rw-r--r-- 1 jenkins jenkins 7524 Oct 27 14:33 sweed_3.2.1+dfsg-5.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1978 Oct 27 14:33 sweed_3.2.1+dfsg-5.dsc -rw-r--r-- 1 jenkins jenkins 4862 Oct 27 14:33 sweed_3.2.1+dfsg-5_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 5744 Oct 27 14:33 sweed_3.2.1+dfsg-5_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1423 Oct 27 14:33 sweed_3.2.1+dfsg-5_arm64.changes -rw-r--r-- 1 jenkins jenkins 59148 Oct 27 14:33 sweed_3.2.1+dfsg-5_arm64.deb -rw-r--r-- 1 jenkins jenkins 1284 Oct 27 14:33 sweed_3.2.1+dfsg-5_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW/b2: total 232 -rw-r--r-- 1 jenkins jenkins 23104 Oct 27 14:34 build.log -rw-r--r-- 1 jenkins jenkins 113060 Oct 27 14:34 sweed-dbgsym_3.2.1+dfsg-5_arm64.deb -rw-r--r-- 1 jenkins jenkins 7524 Oct 27 14:34 sweed_3.2.1+dfsg-5.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1978 Oct 27 14:34 sweed_3.2.1+dfsg-5.dsc -rw-r--r-- 1 jenkins jenkins 4862 Oct 27 14:34 sweed_3.2.1+dfsg-5_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 5744 Oct 27 14:34 sweed_3.2.1+dfsg-5_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1423 Oct 27 14:34 sweed_3.2.1+dfsg-5_arm64.changes -rw-r--r-- 1 jenkins jenkins 59148 Oct 27 14:34 sweed_3.2.1+dfsg-5_arm64.deb -rw-r--r-- 1 jenkins jenkins 1284 Oct 27 14:34 sweed_3.2.1+dfsg-5_source.changes Sun Oct 27 14:34:27 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Sun Oct 27 14:34:28 UTC 2024 I: sweed_3.2.1+dfsg-5_arm64.changes: Format: 1.8 Date: Tue, 22 Sep 2020 08:09:50 +0200 Source: sweed Binary: sweed sweed-dbgsym Architecture: arm64 Version: 3.2.1+dfsg-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Helmut Grohne Description: sweed - assessment of SNPs for their evolutionary advantage Closes: 970693 Changes: sweed (3.2.1+dfsg-5) unstable; urgency=medium . * Team upload. * Fix FTCBFS: Let dh_auto_build pass cross tools to make. (Closes: #970693) Checksums-Sha1: 39ea087aede9510f8f1603e6197c20822e747d48 113060 sweed-dbgsym_3.2.1+dfsg-5_arm64.deb b769180a2ba7015de333907b3d620adc542d89b7 4862 sweed_3.2.1+dfsg-5_arm64.buildinfo 3596eaa50dd5da394bbf039f862c395eefe2883c 59148 sweed_3.2.1+dfsg-5_arm64.deb Checksums-Sha256: 58abc8236a4912bf7d3add3dd49539a32ac58960e2fb7a17783d426943516c94 113060 sweed-dbgsym_3.2.1+dfsg-5_arm64.deb 92f1d2bb9192a193856c4af057a996b6edb5f3066ce826eba1d55c22d1c95ce0 4862 sweed_3.2.1+dfsg-5_arm64.buildinfo 32f627f6b20e1e4e6d76e85af49427f553a1f7c0cab924faad148ee0619efd4f 59148 sweed_3.2.1+dfsg-5_arm64.deb Files: c371fe4ea3df38d2421953c375bf8978 113060 debug optional sweed-dbgsym_3.2.1+dfsg-5_arm64.deb 431d233f3fe02ffdeeeeb8a208f5ae40 4862 science optional sweed_3.2.1+dfsg-5_arm64.buildinfo fde2fde49026b12ec9cc17da61188aa9 59148 science optional sweed_3.2.1+dfsg-5_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/sweed_3.2.1+dfsg-5.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/sweed_3.2.1+dfsg-5.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/sweed_3.2.1+dfsg-5.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/sweed_3.2.1+dfsg-5.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/arm64/sweed_3.2.1+dfsg-5_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/sweed_3.2.1+dfsg-5.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-10-27 14:33:52.118680727 +0000 +++ b2/build.log 2024-10-27 14:34:27.421426358 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Oct 27 02:33:27 -12 2024 -I: pbuilder-time-stamp: 1730039607 +I: Current time: Sun Nov 30 10:56:55 +14 2025 +I: pbuilder-time-stamp: 1764449815 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -30,52 +30,84 @@ dpkg-source: info: applying arm64.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/905224/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3090271/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 29 20:57 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3090271/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3090271/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='ea26f2464a104af7b042a791f2322900' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='905224' - PS1='# ' - PS2='> ' + INVOCATION_ID=60ff649da438412e866c1dde09b833ae + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3090271 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW/pbuilderrc_JcGG --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW/b1 --logfile b1/build.log sweed_3.2.1+dfsg-5.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW/pbuilderrc_Wqok --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW/b2 --logfile b2/build.log sweed_3.2.1+dfsg-5.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink02-arm64 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/905224/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3090271/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -140,7 +172,7 @@ Get: 27 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] -Fetched 19.4 MB in 0s (65.4 MB/s) +Fetched 19.4 MB in 0s (135 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20057 files and directories currently installed.) @@ -271,7 +303,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/sweed-3.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../sweed_3.2.1+dfsg-5_source.changes +I: user script /srv/workspace/pbuilder/3090271/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3090271/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/sweed-3.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../sweed_3.2.1+dfsg-5_source.changes dpkg-buildpackage: info: source package sweed dpkg-buildpackage: info: source version 3.2.1+dfsg-5 dpkg-buildpackage: info: source distribution unstable @@ -345,8 +381,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'sweed-dbgsym' in '../sweed-dbgsym_3.2.1+dfsg-5_arm64.deb'. dpkg-deb: building package 'sweed' in '../sweed_3.2.1+dfsg-5_arm64.deb'. +dpkg-deb: building package 'sweed-dbgsym' in '../sweed-dbgsym_3.2.1+dfsg-5_arm64.deb'. dpkg-genbuildinfo --build=binary -O../sweed_3.2.1+dfsg-5_arm64.buildinfo dpkg-genchanges --build=binary -O../sweed_3.2.1+dfsg-5_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -354,12 +390,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3090271/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3090271/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/905224 and its subdirectories -I: Current time: Sun Oct 27 02:33:51 -12 2024 -I: pbuilder-time-stamp: 1730039631 +I: removing directory /srv/workspace/pbuilder/3090271 and its subdirectories +I: Current time: Sun Nov 30 10:57:25 +14 2025 +I: pbuilder-time-stamp: 1764449845 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/sweed_3.2.1+dfsg-5.diff: 67.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/sweed_3.2.1+dfsg-5.diff.gz b2/build.log: 74.3% -- replaced with stdout Compressing the 1st log... b1/build.log: 75.2% -- replaced with stdout Sun Oct 27 14:34:30 UTC 2024 I: diffoscope 282 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_sweed_trixie_arm64_1730039670 + touch /var/log/reproducible-builds/diffoscope_stamp_sweed_trixie_arm64_1730039670 + RESULT=0 + systemd-run '--description=diffoscope on sweed/3.2.1+dfsg-5 in trixie/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_7-41881 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW --run-session -c jenkins-reproducible-trixie-diffoscope-0537bdcc-7b9c-429d-9926-9b638233ae38 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW/dbd-tmp-WEwZCT0 ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW/sweed_3.2.1+dfsg-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW/sweed_3.2.1+dfsg-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW/sweed_3.2.1+dfsg-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW/b1/sweed_3.2.1+dfsg-5_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW/b2/sweed_3.2.1+dfsg-5_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_7-41881.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW/sweed_3.2.1+dfsg-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW/sweed_3.2.1+dfsg-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW/sweed_3.2.1+dfsg-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW/b1/sweed_3.2.1+dfsg-5_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.w8QnAspW/b2/sweed_3.2.1+dfsg-5_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.548s) 0.548s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.023s) 0.023s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 978ms CPU time consumed: 974ms _ _____ _____ ___ __| | / __\ \ /\ / / _ \/ _ \/ _` | \__ \\ V V / __/ __/ (_| | |___/ \_/\_/ \___|\___|\__,_| Sun Oct 27 14:34:31 UTC 2024 I: diffoscope 282 found no differences in the changes files, and a .buildinfo file also exists. Sun Oct 27 14:34:31 UTC 2024 I: sweed from trixie built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-10-27 14:34:32] INFO: Starting at 2024-10-27 14:34:32.102466 [2024-10-27 14:34:32] INFO: Generating the pages of 1 package(s) [2024-10-27 14:34:32] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/arm64/sweed didn't produce a buildlog, even though it has been built. [2024-10-27 14:34:32] INFO: Finished at 2024-10-27 14:34:32.697330, took: 0:00:00.594872 Sun Oct 27 14:34:32 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/arm64/sweed.html Sun Oct 27 14:34:32 UTC 2024 I: Submitting .buildinfo files to external archives: Sun Oct 27 14:34:32 UTC 2024 I: Submitting 8.0K b1/sweed_3.2.1+dfsg-5_arm64.buildinfo.asc https://buildinfo.debian.net/b769180a2ba7015de333907b3d620adc542d89b7/sweed_3.2.1+dfsg-5_arm64 Sun Oct 27 14:34:33 UTC 2024 I: Submitting 8.0K b2/sweed_3.2.1+dfsg-5_arm64.buildinfo.asc https://buildinfo.debian.net/2c76a9131895801214f08f843578207903266520/sweed_3.2.1+dfsg-5_arm64 Sun Oct 27 14:34:34 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Oct 27 14:34:34 UTC 2024 I: Done submitting .buildinfo files. Sun Oct 27 14:34:34 UTC 2024 I: Removing signed sweed_3.2.1+dfsg-5_arm64.buildinfo.asc files: removed './b1/sweed_3.2.1+dfsg-5_arm64.buildinfo.asc' removed './b2/sweed_3.2.1+dfsg-5_arm64.buildinfo.asc' 1730039674 arm64 trixie sweed Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/sweed_3.2.1+dfsg-5.rbuild.log: 71.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/sweed_3.2.1+dfsg-5.rbuild.log.gz [2024-10-27 14:34:35] INFO: Starting at 2024-10-27 14:34:35.039583 [2024-10-27 14:34:35] INFO: Generating the pages of 1 package(s) [2024-10-27 14:34:35] INFO: Finished at 2024-10-27 14:34:35.643056, took: 0:00:00.603483 All cleanup done. Sun Oct 27 14:34:35 UTC 2024 - total duration: 0h 1m 26s. Sun Oct 27 14:34:35 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-4xkBgx5K, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1min 30.449s CPU time consumed: 8.632s