Running as unit: rb-build-arm64_7-67811.service ==================================================================================== Tue Apr 22 07:35:09 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_7) on jenkins, called using "codethink04-arm64 codethink03-arm64" as arguments. Tue Apr 22 07:35:09 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-UegqL5dj" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Tue Apr 22 07:35:09 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Tue Apr 22 07:35:09 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-8AlkZv' Tue Apr 22 07:35:10 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Tue Apr 22 07:35:10 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-rR3vtg' ok, let's check if libbio-db-refseq-perl is building anywhere yet… ok, libbio-db-refseq-perl is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of libbio-db-refseq-perl in unstable on arm64 on jenkins now. 1st build will be done on codethink04-arm64.debian.net. 2nd build will be done on codethink03-arm64.debian.net. ============================================================================= Tue Apr 22 07:35:17 UTC 2025 I: starting to build libbio-db-refseq-perl/unstable/arm64 on jenkins on '2025-04-22 07:35' Tue Apr 22 07:35:17 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_7/67811/console.log 1745307317 arm64 unstable libbio-db-refseq-perl Tue Apr 22 07:35:17 UTC 2025 I: Downloading source for unstable/libbio-db-refseq-perl=1.7.4-2 --2025-04-22 07:35:17-- http://deb.debian.org/debian/pool/main/libb/libbio-db-refseq-perl/libbio-db-refseq-perl_1.7.4-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2267 (2.2K) [text/prs.lines.tag] Saving to: ‘libbio-db-refseq-perl_1.7.4-2.dsc’ 0K .. 100% 327M=0s 2025-04-22 07:35:17 (327 MB/s) - ‘libbio-db-refseq-perl_1.7.4-2.dsc’ saved [2267/2267] --2025-04-22 07:35:17-- http://deb.debian.org/debian/pool/main/libb/libbio-db-refseq-perl/libbio-db-refseq-perl_1.7.4-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2267 (2.2K) [text/prs.lines.tag] Saving to: ‘libbio-db-refseq-perl_1.7.4-2.dsc’ 0K .. 100% 327M=0s 2025-04-22 07:35:17 (327 MB/s) - ‘libbio-db-refseq-perl_1.7.4-2.dsc’ saved [2267/2267] Tue Apr 22 07:35:17 UTC 2025 I: libbio-db-refseq-perl_1.7.4-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbio-db-refseq-perl Binary: libbio-db-refseq-perl Architecture: all Version: 1.7.4-2 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: https://metacpan.org/release/Bio-DB-RefSeq Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/libbio-db-refseq-perl Vcs-Git: https://salsa.debian.org/med-team/libbio-db-refseq-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 12) Build-Depends-Indep: libbio-perl-perl, libtest-most-perl, libhttp-message-perl, libwww-perl, libtest-requiresinternet-perl, libtest-needs-perl, perl Package-List: libbio-db-refseq-perl deb perl optional arch=all Checksums-Sha1: 3f19baaa6b61630152b8d4973ed32adb720cc786 13741 libbio-db-refseq-perl_1.7.4.orig.tar.gz a477148f9407a7a36bc32cf2e0042dbe2744ff82 2008 libbio-db-refseq-perl_1.7.4-2.debian.tar.xz Checksums-Sha256: f3f4e44827cc86af9c2486c63935474951fde7f8647d2edc0c3a18c23640feab 13741 libbio-db-refseq-perl_1.7.4.orig.tar.gz bd5fe927dd3009ff6f85f8a084b514c1c67c3dbb2b416e066013d141707a85cf 2008 libbio-db-refseq-perl_1.7.4-2.debian.tar.xz Files: 0cfdbfd77e868e39387a7014094b9d58 13741 libbio-db-refseq-perl_1.7.4.orig.tar.gz 5991c511ea92a6400d782901dea9ffa3 2008 libbio-db-refseq-perl_1.7.4-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmgE014RHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBqH6BAAh2J2ZHCCKaTcwPBZE/bo3ueqseXeTzj/ xRQh3xOjyTZfhs3r7H+cynqwTzDNRxs4Ctkqw7ahH78cfKd/+rP16UIlUIfxBJDp NCTJg0xI2bJrGBzKaZWem+Jf6nbHuh8wsUEVap7LxtHMnsVc3cKOIFvovhGiMtaV VtHPp9IeoBE1YYp2MRzlD5502Ceua3JQJyGdp25KtrOLOS7tP4B3ircoEotWW64c Cupa0nEc9Oc4QALFztdGmTAoXivusj9Ss6c1AgV4kDZjbyWCxZM82nPYBJ6pWwRK rEowuDvdsw656qSXUlWu71zu71kJOHqbcqEfFnmYnLuXyHLrGbogLtE8QGBzzyjP QKDBXfgVKhrRGvIN66xFYPbVTxD8ufD/b1Wfrjd98eAhPI0l/kPFFgHVA5msw3ZV 5N/xHwYrf8t75yaJHWBhfcwOTSO0KdFWBHzpdSSYD7VRDrQFoog5amv+viBgh9/l WM8wmm2j0HAt3vphz5X1cEh5Tj4bpwnMKC1eHO47OeEXKXW4x+TSovJfDwEslwRp ugXLnF2hcA1lBcnCx+cHV9T1nOpL8z9j9zeZZcmmf2fO+nJIIEZFtGXfydwmO/f2 L4S3a03jn7TWBeoSkml7YOx45jZGQezhCa955/QDyYZ042VPKYABpCO9y/lA8tQk wsfWza+0tto= =zGBu -----END PGP SIGNATURE----- Tue Apr 22 07:35:17 UTC 2025 I: Checking whether the package is not for us Tue Apr 22 07:35:17 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Tue Apr 22 07:35:17 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Tue Apr 22 07:35:17 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Tue Apr 22 07:35:17 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-FMJzvF' ==================================================================================== Tue Apr 22 07:35:19 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "1 libbio-db-refseq-perl unstable /srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z 1.7.4-2" as arguments. Tue Apr 22 07:35:19 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-IZzeCTwL" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Tue Apr 22 07:35:19 UTC 2025 I: Downloading source for unstable/libbio-db-refseq-perl=1.7.4-2 Reading package lists... NOTICE: 'libbio-db-refseq-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libbio-db-refseq-perl.git Please use: git clone https://salsa.debian.org/med-team/libbio-db-refseq-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 18.0 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main libbio-db-refseq-perl 1.7.4-2 (dsc) [2267 B] Get:2 http://deb.debian.org/debian unstable/main libbio-db-refseq-perl 1.7.4-2 (tar) [13.7 kB] Get:3 http://deb.debian.org/debian unstable/main libbio-db-refseq-perl 1.7.4-2 (diff) [2008 B] Fetched 18.0 kB in 0s (155 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'libbio-db-refseq-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libbio-db-refseq-perl.git Please use: git clone https://salsa.debian.org/med-team/libbio-db-refseq-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 18.0 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main libbio-db-refseq-perl 1.7.4-2 (dsc) [2267 B] Get:2 http://deb.debian.org/debian unstable/main libbio-db-refseq-perl 1.7.4-2 (tar) [13.7 kB] Get:3 http://deb.debian.org/debian unstable/main libbio-db-refseq-perl 1.7.4-2 (diff) [2008 B] Fetched 18.0 kB in 0s (155 kB/s) Download complete and in download only mode ============================================================================= Building libbio-db-refseq-perl in unstable on arm64 on codethink04-arm64 now. Date: Tue Apr 22 08:35:19 BST 2025 Date UTC: Tue Apr 22 07:35:19 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Mon Apr 21 19:35:19 -12 2025 I: pbuilder-time-stamp: 1745307319 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbio-db-refseq-perl_1.7.4-2.dsc] I: copying [./libbio-db-refseq-perl_1.7.4.orig.tar.gz] I: copying [./libbio-db-refseq-perl_1.7.4-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libbio-db-refseq-perl_1.7.4-2.dsc: unsupported subcommand dpkg-source: info: extracting libbio-db-refseq-perl in libbio-db-refseq-perl-1.7.4 dpkg-source: info: unpacking libbio-db-refseq-perl_1.7.4.orig.tar.gz dpkg-source: info: unpacking libbio-db-refseq-perl_1.7.4-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4021378/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='12df00a89c144729be23df1d0eca5839' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4021378' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z/pbuilderrc_bFJ5 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z/b1 --logfile b1/build.log libbio-db-refseq-perl_1.7.4-2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/4021378/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), libbio-perl-perl, libtest-most-perl, libhttp-message-perl, libwww-perl, libtest-requiresinternet-perl, libtest-needs-perl, perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however: Package libbio-perl-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-most-perl; however: Package libtest-most-perl is not installed. pbuilder-satisfydepends-dummy depends on libhttp-message-perl; however: Package libhttp-message-perl is not installed. pbuilder-satisfydepends-dummy depends on libwww-perl; however: Package libwww-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-requiresinternet-perl; however: Package libtest-requiresinternet-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-needs-perl; however: Package libtest-needs-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libarchive-zip-perl{a} libbio-perl-perl{a} libcapture-tiny-perl{a} libclass-data-inheritable-perl{a} libclone-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libelf1t64{a} libencode-locale-perl{a} libexception-class-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libnet-http-perl{a} libnet-ssleay-perl{a} libpipeline1{a} libsub-uplevel-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-needs-perl{a} libtest-requiresinternet-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml2{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: bioperl-run curl libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl libio-compress-brotli-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl lynx perl-tk wget 0 packages upgraded, 71 newly installed, 0 to remove and 0 not upgraded. Need to get 17.4 MB of archives. After unpacking 62.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.5.0-1 [1454 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20250419 [162 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41-4 [93.9 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 25 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.4 [629 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libdata-stag-perl all 0.14-3 [448 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get: 39 http://deb.debian.org/debian unstable/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 liburi-perl all 5.30-1 [105 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libhtml-parser-perl arm64 3.83-1+b2 [97.5 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B] Get: 56 http://deb.debian.org/debian unstable/main arm64 libnet-ssleay-perl arm64 1.94-3 [323 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libnet-http-perl all 6.23-1 [23.9 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libwww-perl all 6.78-1 [183 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libtest-deep-perl all 1.205-1 [52.3 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libtext-diff-perl all 1.45-2 [27.2 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libtest-differences-perl all 0.71-1 [17.9 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libtest-exception-perl all 0.43-3 [16.9 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libtest-warn-perl all 0.37-2 [14.5 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libtest-most-perl all 0.38-1 [25.1 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libtest-needs-perl all 0.002010-1 [9352 B] Get: 71 http://deb.debian.org/debian unstable/main arm64 libtest-requiresinternet-perl all 0.05-4 [6864 B] Fetched 17.4 MB in 0s (127 MB/s) Preconfiguring packages ... Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../00-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package openssl. 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Setting up libcapture-tiny-perl (0.50-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up netbase (6.5) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up openssl (3.5.0-1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up liburi-perl (5.30-1) ... Setting up libnet-ssleay-perl:arm64 (1.94-3) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.23.1-1) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtest-requiresinternet-perl (0.05-4) ... Setting up libtool (2.5.4-4) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libtest-differences-perl (0.71-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libtest-exception-perl (0.43-3) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-7) ... Setting up libhtml-parser-perl:arm64 (3.83-1+b2) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libtest-most-perl (0.38-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Setting up libwww-perl (6.78-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Processing triggers for libc-bin (2.41-7) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libbio-db-refseq-perl-1.7.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-db-refseq-perl_1.7.4-2_source.changes dpkg-buildpackage: info: source package libbio-db-refseq-perl dpkg-buildpackage: info: source version 1.7.4-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-db-refseq-perl-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-db-refseq-perl-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::DB::RefSeq Writing MYMETA.yml and MYMETA.json dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/libbio-db-refseq-perl-1.7.4' cp lib/Bio/DB/RefSeq.pm blib/lib/Bio/DB/RefSeq.pm Manifying 1 pod document make[1]: Leaving directory '/build/reproducible-path/libbio-db-refseq-perl-1.7.4' dh_auto_test make -j12 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbio-db-refseq-perl-1.7.4' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t ........... 1..1 ok 1 - Bio/DB/RefSeq.pm loaded ok ok t/author-mojibake.t ...... skipped: these tests are for testing by the author t/author-pod-coverage.t .. skipped: these tests are for testing by the author t/author-pod-syntax.t .... skipped: these tests are for testing by the author t/RefSeq.t ............... skipped: no host: www.google.com All tests successful. Files=5, Tests=1, 0 wallclock secs ( 0.06 usr 0.00 sys + 0.35 cusr 0.09 csys = 0.50 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libbio-db-refseq-perl-1.7.4' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-db-refseq-perl/ make -j12 install DESTDIR=/build/reproducible-path/libbio-db-refseq-perl-1.7.4/debian/libbio-db-refseq-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libbio-db-refseq-perl-1.7.4' Manifying 1 pod document Installing /build/reproducible-path/libbio-db-refseq-perl-1.7.4/debian/libbio-db-refseq-perl/usr/share/perl5/Bio/DB/RefSeq.pm Installing /build/reproducible-path/libbio-db-refseq-perl-1.7.4/debian/libbio-db-refseq-perl/usr/share/man/man3/Bio::DB::RefSeq.3pm make[1]: Leaving directory '/build/reproducible-path/libbio-db-refseq-perl-1.7.4' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-db-refseq-perl' in '../libbio-db-refseq-perl_1.7.4-2_all.deb'. dpkg-genbuildinfo --build=binary -O../libbio-db-refseq-perl_1.7.4-2_arm64.buildinfo dpkg-genchanges --build=binary -O../libbio-db-refseq-perl_1.7.4-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4021378 and its subdirectories I: Current time: Mon Apr 21 19:35:47 -12 2025 I: pbuilder-time-stamp: 1745307347 Tue Apr 22 07:35:47 UTC 2025 I: Signing ./b1/libbio-db-refseq-perl_1.7.4-2_arm64.buildinfo as libbio-db-refseq-perl_1.7.4-2_arm64.buildinfo.asc Tue Apr 22 07:35:47 UTC 2025 I: Signed ./b1/libbio-db-refseq-perl_1.7.4-2_arm64.buildinfo as ./b1/libbio-db-refseq-perl_1.7.4-2_arm64.buildinfo.asc Tue Apr 22 07:35:47 UTC 2025 - build #1 for libbio-db-refseq-perl/unstable/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Tue Apr 22 07:35:47 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-IZzeCTwL, removing. /srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Apr 22 07:35 b1 drwxr-xr-x 2 jenkins jenkins 4096 Apr 22 07:35 b2 -rw-r--r-- 1 jenkins jenkins 2267 Apr 20 11:07 libbio-db-refseq-perl_1.7.4-2.dsc -rw------- 1 jenkins jenkins 3477 Apr 22 07:35 rbuildlog.99Nmpec /srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z/b1: total 76 -rw-r--r-- 1 jenkins jenkins 35717 Apr 22 07:35 build.log -rw-r--r-- 1 jenkins jenkins 2008 Apr 22 07:35 libbio-db-refseq-perl_1.7.4-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2267 Apr 22 07:35 libbio-db-refseq-perl_1.7.4-2.dsc -rw-r--r-- 1 jenkins jenkins 7400 Apr 22 07:35 libbio-db-refseq-perl_1.7.4-2_all.deb -rw-r--r-- 1 jenkins jenkins 6014 Apr 22 07:35 libbio-db-refseq-perl_1.7.4-2_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 6896 Apr 22 07:35 libbio-db-refseq-perl_1.7.4-2_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1214 Apr 22 07:35 libbio-db-refseq-perl_1.7.4-2_arm64.changes -rw-r--r-- 1 jenkins jenkins 1393 Apr 22 07:35 libbio-db-refseq-perl_1.7.4-2_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z/b2: total 0 Tue Apr 22 07:35:48 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Apr 21 19:35:19 -12 2025 I: pbuilder-time-stamp: 1745307319 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbio-db-refseq-perl_1.7.4-2.dsc] I: copying [./libbio-db-refseq-perl_1.7.4.orig.tar.gz] I: copying [./libbio-db-refseq-perl_1.7.4-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libbio-db-refseq-perl_1.7.4-2.dsc: unsupported subcommand dpkg-source: info: extracting libbio-db-refseq-perl in libbio-db-refseq-perl-1.7.4 dpkg-source: info: unpacking libbio-db-refseq-perl_1.7.4.orig.tar.gz dpkg-source: info: unpacking libbio-db-refseq-perl_1.7.4-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4021378/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='12df00a89c144729be23df1d0eca5839' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4021378' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z/pbuilderrc_bFJ5 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z/b1 --logfile b1/build.log libbio-db-refseq-perl_1.7.4-2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/4021378/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), libbio-perl-perl, libtest-most-perl, libhttp-message-perl, libwww-perl, libtest-requiresinternet-perl, libtest-needs-perl, perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however: Package libbio-perl-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-most-perl; however: Package libtest-most-perl is not installed. pbuilder-satisfydepends-dummy depends on libhttp-message-perl; however: Package libhttp-message-perl is not installed. pbuilder-satisfydepends-dummy depends on libwww-perl; however: Package libwww-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-requiresinternet-perl; however: Package libtest-requiresinternet-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-needs-perl; however: Package libtest-needs-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libarchive-zip-perl{a} libbio-perl-perl{a} libcapture-tiny-perl{a} libclass-data-inheritable-perl{a} libclone-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libelf1t64{a} libencode-locale-perl{a} libexception-class-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libnet-http-perl{a} libnet-ssleay-perl{a} libpipeline1{a} libsub-uplevel-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-needs-perl{a} libtest-requiresinternet-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml2{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: bioperl-run curl libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl libio-compress-brotli-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl lynx perl-tk wget 0 packages upgraded, 71 newly installed, 0 to remove and 0 not upgraded. Need to get 17.4 MB of archives. After unpacking 62.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.5.0-1 [1454 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20250419 [162 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41-4 [93.9 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 25 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.4 [629 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libdata-stag-perl all 0.14-3 [448 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get: 39 http://deb.debian.org/debian unstable/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 liburi-perl all 5.30-1 [105 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libhtml-parser-perl arm64 3.83-1+b2 [97.5 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B] Get: 56 http://deb.debian.org/debian unstable/main arm64 libnet-ssleay-perl arm64 1.94-3 [323 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libnet-http-perl all 6.23-1 [23.9 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libwww-perl all 6.78-1 [183 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libtest-deep-perl all 1.205-1 [52.3 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libtext-diff-perl all 1.45-2 [27.2 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libtest-differences-perl all 0.71-1 [17.9 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libtest-exception-perl all 0.43-3 [16.9 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libtest-warn-perl all 0.37-2 [14.5 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libtest-most-perl all 0.38-1 [25.1 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libtest-needs-perl all 0.002010-1 [9352 B] Get: 71 http://deb.debian.org/debian unstable/main arm64 libtest-requiresinternet-perl all 0.05-4 [6864 B] Fetched 17.4 MB in 0s (127 MB/s) Preconfiguring packages ... Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../00-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package openssl. 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Setting up libcapture-tiny-perl (0.50-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up netbase (6.5) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up openssl (3.5.0-1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up liburi-perl (5.30-1) ... Setting up libnet-ssleay-perl:arm64 (1.94-3) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.23.1-1) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtest-requiresinternet-perl (0.05-4) ... Setting up libtool (2.5.4-4) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libtest-differences-perl (0.71-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libtest-exception-perl (0.43-3) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-7) ... Setting up libhtml-parser-perl:arm64 (3.83-1+b2) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libtest-most-perl (0.38-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Setting up libwww-perl (6.78-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Processing triggers for libc-bin (2.41-7) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libbio-db-refseq-perl-1.7.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-db-refseq-perl_1.7.4-2_source.changes dpkg-buildpackage: info: source package libbio-db-refseq-perl dpkg-buildpackage: info: source version 1.7.4-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-db-refseq-perl-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-db-refseq-perl-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::DB::RefSeq Writing MYMETA.yml and MYMETA.json dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/libbio-db-refseq-perl-1.7.4' cp lib/Bio/DB/RefSeq.pm blib/lib/Bio/DB/RefSeq.pm Manifying 1 pod document make[1]: Leaving directory '/build/reproducible-path/libbio-db-refseq-perl-1.7.4' dh_auto_test make -j12 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbio-db-refseq-perl-1.7.4' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t ........... 1..1 ok 1 - Bio/DB/RefSeq.pm loaded ok ok t/author-mojibake.t ...... skipped: these tests are for testing by the author t/author-pod-coverage.t .. skipped: these tests are for testing by the author t/author-pod-syntax.t .... skipped: these tests are for testing by the author t/RefSeq.t ............... skipped: no host: www.google.com All tests successful. Files=5, Tests=1, 0 wallclock secs ( 0.06 usr 0.00 sys + 0.35 cusr 0.09 csys = 0.50 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libbio-db-refseq-perl-1.7.4' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-db-refseq-perl/ make -j12 install DESTDIR=/build/reproducible-path/libbio-db-refseq-perl-1.7.4/debian/libbio-db-refseq-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libbio-db-refseq-perl-1.7.4' Manifying 1 pod document Installing /build/reproducible-path/libbio-db-refseq-perl-1.7.4/debian/libbio-db-refseq-perl/usr/share/perl5/Bio/DB/RefSeq.pm Installing /build/reproducible-path/libbio-db-refseq-perl-1.7.4/debian/libbio-db-refseq-perl/usr/share/man/man3/Bio::DB::RefSeq.3pm make[1]: Leaving directory '/build/reproducible-path/libbio-db-refseq-perl-1.7.4' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-db-refseq-perl' in '../libbio-db-refseq-perl_1.7.4-2_all.deb'. dpkg-genbuildinfo --build=binary -O../libbio-db-refseq-perl_1.7.4-2_arm64.buildinfo dpkg-genchanges --build=binary -O../libbio-db-refseq-perl_1.7.4-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4021378 and its subdirectories I: Current time: Mon Apr 21 19:35:47 -12 2025 I: pbuilder-time-stamp: 1745307347 Tue Apr 22 07:35:48 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Tue Apr 22 07:35:48 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Tue Apr 22 07:35:48 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Tue Apr 22 07:35:48 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-j9fzXw' ==================================================================================== Mon May 25 13:58:49 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "2 libbio-db-refseq-perl unstable /srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z 1.7.4-2" as arguments. Mon May 25 13:58:49 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-zSt9DIqB" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon May 25 13:58:49 UTC 2026 I: Downloading source for unstable/libbio-db-refseq-perl=1.7.4-2 Reading package lists... NOTICE: 'libbio-db-refseq-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libbio-db-refseq-perl.git Please use: git clone https://salsa.debian.org/med-team/libbio-db-refseq-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 18.0 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main libbio-db-refseq-perl 1.7.4-2 (dsc) [2267 B] Get:2 http://deb.debian.org/debian unstable/main libbio-db-refseq-perl 1.7.4-2 (tar) [13.7 kB] Get:3 http://deb.debian.org/debian unstable/main libbio-db-refseq-perl 1.7.4-2 (diff) [2008 B] Fetched 18.0 kB in 0s (1295 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'libbio-db-refseq-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libbio-db-refseq-perl.git Please use: git clone https://salsa.debian.org/med-team/libbio-db-refseq-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 18.0 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main libbio-db-refseq-perl 1.7.4-2 (dsc) [2267 B] Get:2 http://deb.debian.org/debian unstable/main libbio-db-refseq-perl 1.7.4-2 (tar) [13.7 kB] Get:3 http://deb.debian.org/debian unstable/main libbio-db-refseq-perl 1.7.4-2 (diff) [2008 B] Fetched 18.0 kB in 0s (1295 kB/s) Download complete and in download only mode ============================================================================= Re-Building libbio-db-refseq-perl in unstable on arm64 on codethink03-arm64 now. Date: Mon May 25 14:58:50 BST 2026 Date UTC: Mon May 25 13:58:50 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z/pbuilderrc_YB50 + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' libbio-db-refseq-perl = debian-installer -o libbio-db-refseq-perl = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' libbio-db-refseq-perl = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z/pbuilderrc_YB50 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z/b2 --logfile b2/build.log libbio-db-refseq-perl_1.7.4-2.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Tue May 26 03:58:50 +14 2026 I: pbuilder-time-stamp: 1779717530 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbio-db-refseq-perl_1.7.4-2.dsc] I: copying [./libbio-db-refseq-perl_1.7.4.orig.tar.gz] I: copying [./libbio-db-refseq-perl_1.7.4-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libbio-db-refseq-perl_1.7.4-2.dsc: unsupported subcommand dpkg-source: info: extracting libbio-db-refseq-perl in libbio-db-refseq-perl-1.7.4 dpkg-source: info: unpacking libbio-db-refseq-perl_1.7.4.orig.tar.gz dpkg-source: info: unpacking libbio-db-refseq-perl_1.7.4-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1461385/tmp/hooks/D01_modify_environment starting debug: Running on codethink03-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 May 25 13:58 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1461385/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1461385/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=f80786ff826a43bb934adc7d47b006f6 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1461385 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z/pbuilderrc_YB50 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z/b2 --logfile b2/build.log libbio-db-refseq-perl_1.7.4-2.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1461385/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), libbio-perl-perl, libtest-most-perl, libhttp-message-perl, libwww-perl, libtest-requiresinternet-perl, libtest-needs-perl, perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however: Package libbio-perl-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-most-perl; however: Package libtest-most-perl is not installed. pbuilder-satisfydepends-dummy depends on libhttp-message-perl; however: Package libhttp-message-perl is not installed. pbuilder-satisfydepends-dummy depends on libwww-perl; however: Package libwww-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-requiresinternet-perl; however: Package libtest-requiresinternet-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-needs-perl; however: Package libtest-needs-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libarchive-zip-perl{a} libbio-perl-perl{a} libcapture-tiny-perl{a} libclass-data-inheritable-perl{a} libclone-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libelf1t64{a} libencode-locale-perl{a} libexception-class-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libnet-http-perl{a} libnet-ssleay-perl{a} libpipeline1{a} libsub-uplevel-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-needs-perl{a} libtest-requiresinternet-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml2{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: bioperl-run curl libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl libio-compress-brotli-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl lynx perl-tk wget 0 packages upgraded, 71 newly installed, 0 to remove and 0 not upgraded. Need to get 17.4 MB of archives. After unpacking 62.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.5.0-1 [1454 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20250419 [162 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41-4 [93.9 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 25 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.4 [629 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libdata-stag-perl all 0.14-3 [448 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get: 39 http://deb.debian.org/debian unstable/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 liburi-perl all 5.30-1 [105 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libhtml-parser-perl arm64 3.83-1+b2 [97.5 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B] Get: 56 http://deb.debian.org/debian unstable/main arm64 libnet-ssleay-perl arm64 1.94-3 [323 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libnet-http-perl all 6.23-1 [23.9 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libwww-perl all 6.78-1 [183 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libtest-deep-perl all 1.205-1 [52.3 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libtext-diff-perl all 1.45-2 [27.2 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libtest-differences-perl all 0.71-1 [17.9 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libtest-exception-perl all 0.43-3 [16.9 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libtest-warn-perl all 0.37-2 [14.5 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libtest-most-perl all 0.38-1 [25.1 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libtest-needs-perl all 0.002010-1 [9352 B] Get: 71 http://deb.debian.org/debian unstable/main arm64 libtest-requiresinternet-perl all 0.05-4 [6864 B] Fetched 17.4 MB in 0s (69.6 MB/s) Preconfiguring packages ... Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19953 files and directories currently installed.) Preparing to unpack .../00-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.5.0-1_arm64.deb ... Unpacking openssl (3.5.0-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../03-ca-certificates_20250419_all.deb ... Unpacking ca-certificates (20250419) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../08-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41-4_arm64.deb ... Unpacking bsdextrautils (2.41-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../11-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-8_arm64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. 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Setting up libclone-perl:arm64 (0.47-1+b1) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up perl-openssl-defaults:arm64 (7+b2) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-8) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libtest-needs-perl (0.002010-1) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20240727.1) ... Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libtext-diff-perl (1.45-2) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.23.1-1) ... Setting up autoconf (2.72-3.1) ... Setting up libcapture-tiny-perl (0.50-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up netbase (6.5) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up openssl (3.5.0-1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up liburi-perl (5.30-1) ... Setting up libnet-ssleay-perl:arm64 (1.94-3) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.23.1-1) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtest-requiresinternet-perl (0.05-4) ... Setting up libtool (2.5.4-4) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libtest-differences-perl (0.71-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libtest-exception-perl (0.43-3) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-7) ... Setting up libhtml-parser-perl:arm64 (3.83-1+b2) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libtest-most-perl (0.38-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Setting up libwww-perl (6.78-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Processing triggers for libc-bin (2.41-7) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1461385/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/1461385/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/libbio-db-refseq-perl-1.7.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbio-db-refseq-perl_1.7.4-2_source.changes dpkg-buildpackage: info: source package libbio-db-refseq-perl dpkg-buildpackage: info: source version 1.7.4-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-db-refseq-perl-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-db-refseq-perl-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::DB::RefSeq Writing MYMETA.yml and MYMETA.json dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/libbio-db-refseq-perl-1.7.4' cp lib/Bio/DB/RefSeq.pm blib/lib/Bio/DB/RefSeq.pm Manifying 1 pod document make[1]: Leaving directory '/build/reproducible-path/libbio-db-refseq-perl-1.7.4' dh_auto_test make -j12 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbio-db-refseq-perl-1.7.4' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t ........... 1..1 ok 1 - Bio/DB/RefSeq.pm loaded ok ok t/author-mojibake.t ...... skipped: these tests are for testing by the author t/author-pod-coverage.t .. skipped: these tests are for testing by the author t/author-pod-syntax.t .... skipped: these tests are for testing by the author t/RefSeq.t ............... skipped: no host: www.google.com All tests successful. Files=5, Tests=1, 1 wallclock secs ( 0.02 usr 0.00 sys + 0.24 cusr 0.03 csys = 0.29 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libbio-db-refseq-perl-1.7.4' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-db-refseq-perl/ make -j12 install DESTDIR=/build/reproducible-path/libbio-db-refseq-perl-1.7.4/debian/libbio-db-refseq-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libbio-db-refseq-perl-1.7.4' Manifying 1 pod document Installing /build/reproducible-path/libbio-db-refseq-perl-1.7.4/debian/libbio-db-refseq-perl/usr/share/perl5/Bio/DB/RefSeq.pm Installing /build/reproducible-path/libbio-db-refseq-perl-1.7.4/debian/libbio-db-refseq-perl/usr/share/man/man3/Bio::DB::RefSeq.3pm make[1]: Leaving directory '/build/reproducible-path/libbio-db-refseq-perl-1.7.4' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-db-refseq-perl' in '../libbio-db-refseq-perl_1.7.4-2_all.deb'. dpkg-genbuildinfo --build=binary -O../libbio-db-refseq-perl_1.7.4-2_arm64.buildinfo dpkg-genchanges --build=binary -O../libbio-db-refseq-perl_1.7.4-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1461385/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1461385/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1461385 and its subdirectories I: Current time: Tue May 26 04:00:27 +14 2026 + false + set +x I: pbuilder-time-stamp: 1779717627 Mon May 25 14:00:27 UTC 2026 I: Signing ./b2/libbio-db-refseq-perl_1.7.4-2_arm64.buildinfo as libbio-db-refseq-perl_1.7.4-2_arm64.buildinfo.asc Mon May 25 14:00:28 UTC 2026 I: Signed ./b2/libbio-db-refseq-perl_1.7.4-2_arm64.buildinfo as ./b2/libbio-db-refseq-perl_1.7.4-2_arm64.buildinfo.asc Mon May 25 14:00:28 UTC 2026 - build #2 for libbio-db-refseq-perl/unstable/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Mon May 25 14:00:28 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-zSt9DIqB, removing. /srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z: total 52 drwxr-xr-x 2 jenkins jenkins 4096 Apr 22 07:35 b1 drwxr-xr-x 2 jenkins jenkins 4096 Apr 22 07:37 b2 -rw-r--r-- 1 jenkins jenkins 2267 Apr 20 11:07 libbio-db-refseq-perl_1.7.4-2.dsc -rw------- 1 jenkins jenkins 39495 Apr 22 07:35 rbuildlog.99Nmpec /srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z/b1: total 76 -rw-r--r-- 1 jenkins jenkins 35717 Apr 22 07:35 build.log -rw-r--r-- 1 jenkins jenkins 2008 Apr 22 07:35 libbio-db-refseq-perl_1.7.4-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2267 Apr 22 07:35 libbio-db-refseq-perl_1.7.4-2.dsc -rw-r--r-- 1 jenkins jenkins 7400 Apr 22 07:35 libbio-db-refseq-perl_1.7.4-2_all.deb -rw-r--r-- 1 jenkins jenkins 6014 Apr 22 07:35 libbio-db-refseq-perl_1.7.4-2_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 6896 Apr 22 07:35 libbio-db-refseq-perl_1.7.4-2_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1214 Apr 22 07:35 libbio-db-refseq-perl_1.7.4-2_arm64.changes -rw-r--r-- 1 jenkins jenkins 1393 Apr 22 07:35 libbio-db-refseq-perl_1.7.4-2_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z/b2: total 80 -rw-r--r-- 1 jenkins jenkins 37663 Apr 22 07:37 build.log -rw-r--r-- 1 jenkins jenkins 2008 Apr 22 07:37 libbio-db-refseq-perl_1.7.4-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2267 Apr 22 07:37 libbio-db-refseq-perl_1.7.4-2.dsc -rw-r--r-- 1 jenkins jenkins 7400 Apr 22 07:37 libbio-db-refseq-perl_1.7.4-2_all.deb -rw-r--r-- 1 jenkins jenkins 6014 Apr 22 07:37 libbio-db-refseq-perl_1.7.4-2_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 6896 Apr 22 07:37 libbio-db-refseq-perl_1.7.4-2_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1214 Apr 22 07:37 libbio-db-refseq-perl_1.7.4-2_arm64.changes -rw-r--r-- 1 jenkins jenkins 1393 Apr 22 07:37 libbio-db-refseq-perl_1.7.4-2_source.changes Tue Apr 22 07:37:29 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Tue Apr 22 07:37:30 UTC 2025 I: libbio-db-refseq-perl_1.7.4-2_arm64.changes: Format: 1.8 Date: Sun, 20 Apr 2025 12:45:44 +0200 Source: libbio-db-refseq-perl Binary: libbio-db-refseq-perl Architecture: all Version: 1.7.4-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Alexandre Detiste Description: libbio-db-refseq-perl - Database object interface for RefSeq retrieval Changes: libbio-db-refseq-perl (1.7.4-2) unstable; urgency=medium . * Team Upload * Bump Standards-version to 4.7.2 . [ Andreas Tille ] * Fix maintainer address Checksums-Sha1: 9080b7dc48d70d829dc1e9e9d8765115b72daab8 7400 libbio-db-refseq-perl_1.7.4-2_all.deb 4db6241fe4c93c140d69252f47ac4bdb8403ac39 6014 libbio-db-refseq-perl_1.7.4-2_arm64.buildinfo Checksums-Sha256: 7bbc3d8da0c6c06f266ceeddbfed9485363b5f7b0d847d2936be929d2a3ed6bd 7400 libbio-db-refseq-perl_1.7.4-2_all.deb bb76a213180b432813eb75b1c831ed2ca8f705b8fe52fe98c61a99fbf84a5aba 6014 libbio-db-refseq-perl_1.7.4-2_arm64.buildinfo Files: acbd27e05bc8af46a2b993ee5c7d6c18 7400 perl optional libbio-db-refseq-perl_1.7.4-2_all.deb 98990005abc574f366442371296bcce2 6014 perl optional libbio-db-refseq-perl_1.7.4-2_arm64.buildinfo removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/libbio-db-refseq-perl_1.7.4-2.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/libbio-db-refseq-perl_1.7.4-2.rbuild.log.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-04-22 07:35:48.021782707 +0000 +++ b2/build.log 2025-04-22 07:37:29.519625851 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Apr 21 19:35:19 -12 2025 -I: pbuilder-time-stamp: 1745307319 +I: Current time: Tue May 26 03:58:50 +14 2026 +I: pbuilder-time-stamp: 1779717530 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -22,52 +22,84 @@ dpkg-source: info: unpacking libbio-db-refseq-perl_1.7.4-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/4021378/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1461385/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 25 13:58 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1461385/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1461385/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='12df00a89c144729be23df1d0eca5839' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='4021378' - PS1='# ' - PS2='> ' + INVOCATION_ID=f80786ff826a43bb934adc7d47b006f6 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1461385 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z/pbuilderrc_bFJ5 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z/b1 --logfile b1/build.log libbio-db-refseq-perl_1.7.4-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z/pbuilderrc_YB50 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z/b2 --logfile b2/build.log libbio-db-refseq-perl_1.7.4-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/4021378/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1461385/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -186,7 +218,7 @@ Get: 69 http://deb.debian.org/debian unstable/main arm64 libtest-most-perl all 0.38-1 [25.1 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libtest-needs-perl all 0.002010-1 [9352 B] Get: 71 http://deb.debian.org/debian unstable/main arm64 libtest-requiresinternet-perl all 0.05-4 [6864 B] -Fetched 17.4 MB in 0s (127 MB/s) +Fetched 17.4 MB in 0s (69.6 MB/s) Preconfiguring packages ... Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19953 files and directories currently installed.) @@ -492,7 +524,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libbio-db-refseq-perl-1.7.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-db-refseq-perl_1.7.4-2_source.changes +I: user script /srv/workspace/pbuilder/1461385/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1461385/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libbio-db-refseq-perl-1.7.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbio-db-refseq-perl_1.7.4-2_source.changes dpkg-buildpackage: info: source package libbio-db-refseq-perl dpkg-buildpackage: info: source version 1.7.4-2 dpkg-buildpackage: info: source distribution unstable @@ -532,7 +568,7 @@ t/author-pod-syntax.t .... skipped: these tests are for testing by the author t/RefSeq.t ............... skipped: no host: www.google.com All tests successful. -Files=5, Tests=1, 0 wallclock secs ( 0.06 usr 0.00 sys + 0.35 cusr 0.09 csys = 0.50 CPU) +Files=5, Tests=1, 1 wallclock secs ( 0.02 usr 0.00 sys + 0.24 cusr 0.03 csys = 0.29 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libbio-db-refseq-perl-1.7.4' create-stamp debian/debhelper-build-stamp @@ -565,12 +601,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1461385/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1461385/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/4021378 and its subdirectories -I: Current time: Mon Apr 21 19:35:47 -12 2025 -I: pbuilder-time-stamp: 1745307347 +I: removing directory /srv/workspace/pbuilder/1461385 and its subdirectories +I: Current time: Tue May 26 04:00:27 +14 2026 +I: pbuilder-time-stamp: 1779717627 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/libbio-db-refseq-perl_1.7.4-2.diff: 66.5% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/libbio-db-refseq-perl_1.7.4-2.diff.gz b2/build.log: 77.6% -- replaced with stdout Compressing the 1st log... b1/build.log: 78.2% -- replaced with stdout Tue Apr 22 07:37:31 UTC 2025 I: diffoscope 294 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_libbio-db-refseq-perl_unstable_arm64_1745307451 + touch /var/log/reproducible-builds/diffoscope_stamp_libbio-db-refseq-perl_unstable_arm64_1745307451 + RESULT=0 + systemd-run '--description=diffoscope on libbio-db-refseq-perl/1.7.4-2 in unstable/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_7-67811 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z --run-session -c jenkins-reproducible-unstable-diffoscope-1bd35de4-a65c-4d5d-b71d-0d5b1f0074d1 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z/dbd-tmp-WtrKc56 ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z/libbio-db-refseq-perl_1.7.4-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z/libbio-db-refseq-perl_1.7.4-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z/libbio-db-refseq-perl_1.7.4-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z/b1/libbio-db-refseq-perl_1.7.4-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z/b2/libbio-db-refseq-perl_1.7.4-2_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_7-67811.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z/libbio-db-refseq-perl_1.7.4-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z/libbio-db-refseq-perl_1.7.4-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z/libbio-db-refseq-perl_1.7.4-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z/b1/libbio-db-refseq-perl_1.7.4-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.cHMAJ71z/b2/libbio-db-refseq-perl_1.7.4-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 235ms CPU time consumed: 236ms _ _ _ _ _ _ _ __ | (_) |__ | |__ (_) ___ __| | |__ _ __ ___ / _|___ ___ __ _ | | | '_ \| '_ \| |/ _ \ _____ / _` | '_ \ _____| '__/ _ \ |_/ __|/ _ \/ _` | | | | |_) | |_) | | (_) |_____| (_| | |_) |_____| | | __/ _\__ \ __/ (_| | |_|_|_.__/|_.__/|_|\___/ \__,_|_.__/ |_| \___|_| |___/\___|\__, | |_| _ _ __ ___ _ __| | _____| '_ \ / _ \ '__| | |_____| |_) | __/ | | | | .__/ \___|_| |_| |_| Tue Apr 22 07:37:31 UTC 2025 I: diffoscope 294 found no differences in the changes files, and a .buildinfo file also exists. Tue Apr 22 07:37:31 UTC 2025 I: libbio-db-refseq-perl from unstable built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-04-22 07:37:32] INFO: Starting at 2025-04-22 07:37:32.454328 [2025-04-22 07:37:32] INFO: Generating the pages of 1 package(s) [2025-04-22 07:37:32] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/arm64/libbio-db-refseq-perl didn't produce a buildlog, even though it has been built. [2025-04-22 07:37:32] INFO: Finished at 2025-04-22 07:37:32.803772, took: 0:00:00.349452 Tue Apr 22 07:37:32 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/arm64/libbio-db-refseq-perl.html Tue Apr 22 07:37:32 UTC 2025 I: Submitting .buildinfo files to external archives: Tue Apr 22 07:37:32 UTC 2025 I: Submitting 8.0K b1/libbio-db-refseq-perl_1.7.4-2_arm64.buildinfo.asc https://buildinfo.debian.net/4db6241fe4c93c140d69252f47ac4bdb8403ac39/libbio-db-refseq-perl_1.7.4-2_all Tue Apr 22 07:37:43 UTC 2025 I: Submitting 8.0K b2/libbio-db-refseq-perl_1.7.4-2_arm64.buildinfo.asc https://buildinfo.debian.net/4c557e05e6a6ec28617182ca1cf5321d73ea535a/libbio-db-refseq-perl_1.7.4-2_all Tue Apr 22 07:37:51 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Apr 22 07:37:51 UTC 2025 I: Done submitting .buildinfo files. Tue Apr 22 07:37:51 UTC 2025 I: Removing signed libbio-db-refseq-perl_1.7.4-2_arm64.buildinfo.asc files: removed './b1/libbio-db-refseq-perl_1.7.4-2_arm64.buildinfo.asc' removed './b2/libbio-db-refseq-perl_1.7.4-2_arm64.buildinfo.asc' 1745307471 arm64 unstable libbio-db-refseq-perl Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/libbio-db-refseq-perl_1.7.4-2.rbuild.log: 75.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/libbio-db-refseq-perl_1.7.4-2.rbuild.log.gz [2025-04-22 07:37:52] INFO: Starting at 2025-04-22 07:37:52.247596 [2025-04-22 07:37:52] INFO: Generating the pages of 1 package(s) [2025-04-22 07:37:52] INFO: Finished at 2025-04-22 07:37:52.587818, took: 0:00:00.340228 All cleanup done. Tue Apr 22 07:37:52 UTC 2025 - total duration: 0h 2m 22s. Tue Apr 22 07:37:52 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-UegqL5dj, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 2min 42.880s CPU time consumed: 6.900s