Running as unit: rb-build-arm64_7-97167.service; invocation ID: 8c9c888d39d745389cc789d892e8ef92 ==================================================================================== Thu Sep 18 11:29:00 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_7) on jenkins, called using "codethink04-arm64 codethink03-arm64" as arguments. Thu Sep 18 11:29:00 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-EMKDeie9" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Sep 18 11:29:00 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Thu Sep 18 11:29:00 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-jswWaB' Thu Sep 18 11:29:01 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Thu Sep 18 11:29:01 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-CuZA8F' ok, let's check if altree is building anywhere yet… ok, altree is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of altree in unstable on arm64 on jenkins now. 1st build will be done on codethink04-arm64.debian.net. 2nd build will be done on codethink03-arm64.debian.net. ============================================================================= Thu Sep 18 11:29:05 UTC 2025 I: starting to build altree/unstable/arm64 on jenkins on '2025-09-18 11:29' Thu Sep 18 11:29:05 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_7/97167/console.log 1758194945 arm64 unstable altree Thu Sep 18 11:29:05 UTC 2025 I: Downloading source for unstable/altree=1.3.2-4 --2025-09-18 11:29:05-- http://deb.debian.org/debian/pool/main/a/altree/altree_1.3.2-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2535 (2.5K) [text/prs.lines.tag] Saving to: ‘altree_1.3.2-4.dsc’ 0K .. 100% 246M=0s 2025-09-18 11:29:05 (246 MB/s) - ‘altree_1.3.2-4.dsc’ saved [2535/2535] --2025-09-18 11:29:05-- http://deb.debian.org/debian/pool/main/a/altree/altree_1.3.2-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2535 (2.5K) [text/prs.lines.tag] Saving to: ‘altree_1.3.2-4.dsc’ 0K .. 100% 246M=0s 2025-09-18 11:29:05 (246 MB/s) - ‘altree_1.3.2-4.dsc’ saved [2535/2535] Thu Sep 18 11:29:05 UTC 2025 I: altree_1.3.2-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: altree Binary: altree, altree-examples Architecture: any all Version: 1.3.2-4 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Vincent Danjean , Andreas Tille Homepage: https://gitlab.inria.fr/NGS/ALTree Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/altree Vcs-Git: https://salsa.debian.org/med-team/altree.git Testsuite: autopkgtest Build-Depends: bash-completion, debhelper-compat (= 13), perl:native, perl-xs-dev, latex-make , ghostscript , texlive-lang-french , texlive-latex-extra , texlive-latex-recommended , texlive-fonts-recommended , libmath-tamuanova-perl , libgsl-dev, libblas-dev | libblas.so, libtest-deep-perl , fig2dev Package-List: altree deb science optional arch=any altree-examples deb science optional arch=all Checksums-Sha1: 095d136e5ffbeeb2f0e0da550a8a06e8ff5ca7f0 610823 altree_1.3.2.orig.tar.gz 9eea3bc6fd990154c1114fcc4152f8433a928ba9 8600 altree_1.3.2-4.debian.tar.xz Checksums-Sha256: f9d5beda91aaab219e1397b4c19e0649788a871c8c29fa1e8343a53c5f710b8e 610823 altree_1.3.2.orig.tar.gz 7a5fbcde62b2fcf6574d0e8a7f93d251052a7e8e7d28f2d40306df95d6c33cdf 8600 altree_1.3.2-4.debian.tar.xz Files: fd17066d7f6bc07baacf526ff3ee1c3b 610823 altree_1.3.2.orig.tar.gz 6a0c58fdbbec7352b2c4191fab69612a 8600 altree_1.3.2-4.debian.tar.xz Dgit: d47aaa76f33b223dbc6ef2dcac903f2235815635 debian archive/debian/1.3.2-4 https://git.dgit.debian.org/altree -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmjLBX8UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdo+2w/5AdN4l/fz/jwYIyC/Y2yK0q8SxfAg pieIP0NbTmhZ3/p+xMX+oG7FuhvmM4YOwJzp4Cm9gaXVj5pRLwto1P9YASB/cmz/ xObBRRVlxXgqApcCDPknamep92XxJ+yip4601VvG65n6rDR9vNG2lBeSlPgipNO3 v8+xqv2YzUxTvBWEgnBs1uFhhCZauxAFDpEejXk+VUOpAPicGW/v0vtznLp9ds+E IHDfMyBeKPP5WO8p7Td6YQIuM0C7aya0/s89csonbrdD3EwQpnXm+nn6mbEfpKlG dqLKGbUnBF33U4jG6x3sU0sW8uR9M7eYQIlXHOpNruL/qzltaFb8eWO+DgCFvcNB ebUxJcSY3CL+ck/61DJbF3FsMB8TUye0jVLDlNOjWMQ0WumoWlyp1xwdMFI9uXCZ DyIPvGxZVEIk4XGsOpB2XZTuDOND9+1+u/ehNOvDdEb0CUt4SdQGN+TzoxVSPGdj yRrEuImUfOUUr0Z/VkRrUEUnldPahpd6u8SMM5ps09cQLlBeG2i3RNP2FWnQ6lLF x5rrQl8/Wh1jmHExVaVh0oocu3nnZXF0q4YsmxaqdrwYCPdqmror9CuPwT79RS8L sTIBDDvUTTiqq0g9T+093NvjmPqOqwrc7G76Gw+aJ3vkCVSskcCDWt/l2slc/cc0 urzG6Ztw5JgshQ0= =fRO8 -----END PGP SIGNATURE----- Thu Sep 18 11:29:05 UTC 2025 I: Checking whether the package is not for us Thu Sep 18 11:29:05 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Thu Sep 18 11:29:05 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Thu Sep 18 11:29:05 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Thu Sep 18 11:29:05 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-7pHrVj' ==================================================================================== Thu Sep 18 11:29:06 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "1 altree unstable /srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G 1.3.2-4" as arguments. Thu Sep 18 11:29:06 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-e8iXB1o6" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Sep 18 11:29:06 UTC 2025 I: Downloading source for unstable/altree=1.3.2-4 Reading package lists... NOTICE: 'altree' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/altree.git Please use: git clone https://salsa.debian.org/med-team/altree.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 622 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main altree 1.3.2-4 (dsc) [2535 B] Get:2 http://deb.debian.org/debian unstable/main altree 1.3.2-4 (tar) [611 kB] Get:3 http://deb.debian.org/debian unstable/main altree 1.3.2-4 (diff) [8600 B] Fetched 622 kB in 0s (12.1 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'altree' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/altree.git Please use: git clone https://salsa.debian.org/med-team/altree.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 622 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main altree 1.3.2-4 (dsc) [2535 B] Get:2 http://deb.debian.org/debian unstable/main altree 1.3.2-4 (tar) [611 kB] Get:3 http://deb.debian.org/debian unstable/main altree 1.3.2-4 (diff) [8600 B] Fetched 622 kB in 0s (12.1 MB/s) Download complete and in download only mode ============================================================================= Building altree in unstable on arm64 on codethink04-arm64 now. Date: Thu Sep 18 12:29:06 BST 2025 Date UTC: Thu Sep 18 11:29:06 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Sep 17 23:29:07 -12 2025 I: pbuilder-time-stamp: 1758194947 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [altree_1.3.2-4.dsc] I: copying [./altree_1.3.2.orig.tar.gz] I: copying [./altree_1.3.2-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./altree_1.3.2-4.dsc: no acceptable signature found dpkg-source: info: extracting altree in altree-1.3.2 dpkg-source: info: unpacking altree_1.3.2.orig.tar.gz dpkg-source: info: unpacking altree_1.3.2-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc-15.patch dpkg-source: info: applying typo.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/479061/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='47258fd50b31491899cf6abb9377f0ff' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='479061' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G/pbuilderrc_8Fvh --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G/b1 --logfile b1/build.log altree_1.3.2-4.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/479061/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: bash-completion, debhelper-compat (= 13), perl:native, perl-xs-dev, latex-make, ghostscript, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, libmath-tamuanova-perl, libgsl-dev, libblas-dev | libblas.so, libtest-deep-perl, fig2dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on bash-completion; however: Package bash-completion is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on perl:native. pbuilder-satisfydepends-dummy depends on perl-xs-dev; however: Package perl-xs-dev is not installed. pbuilder-satisfydepends-dummy depends on latex-make; however: Package latex-make is not installed. pbuilder-satisfydepends-dummy depends on ghostscript; however: Package ghostscript is not installed. pbuilder-satisfydepends-dummy depends on texlive-lang-french; however: Package texlive-lang-french is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. pbuilder-satisfydepends-dummy depends on libmath-tamuanova-perl; however: Package libmath-tamuanova-perl is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libblas-dev | libblas.so; however: Package libblas-dev is not installed. Package libblas.so is not installed. pbuilder-satisfydepends-dummy depends on libtest-deep-perl; however: Package libtest-deep-perl is not installed. pbuilder-satisfydepends-dummy depends on fig2dev; however: Package fig2dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bash-completion{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} fig2dev{a} file{a} fontconfig-config{a} fonts-lmodern{a} fonts-urw-base35{a} gawk{a} gettext{a} gettext-base{a} ghostscript{a} groff-base{a} intltool-debian{a} latex-make{a} libapache-pom-java{a} libarchive-zip-perl{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libblas-dev{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2t64{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontbox-java{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libgs-common{a} libgs10{a} libgs10-common{a} libgsl-dev{a} libgsl28{a} libgslcblas0{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libice6{a} libicu76{a} libidn12{a} libidn2-0{a} libijs-0.35{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkpathsea6{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libmath-tamuanova-perl{a} libmpfi0{a} libnetpbm11t64{a} libopenjp2-7{a} libp11-kit0{a} libpaper-utils{a} libpaper2{a} libpdfbox-java{a} libperl-dev{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpotrace0{a} libproc2-0{a} libptexenc1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libsharpyuv0{a} libsm6{a} libsynctex2{a} libtamuanova-0.2{a} libtasn1-6{a} libteckit0{a} libtest-deep-perl{a} libtexlua53-5{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libtiff6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2-16{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libzzip-0-13t64{a} m4{a} man-db{a} media-types{a} netbase{a} netpbm{a} po-debconf{a} poppler-data{a} preview-latex-style{a} procps{a} python3{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-lang-french{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} tzdata{a} ucf{a} x11-common{a} xdg-utils{a} xfonts-encodings{a} xfonts-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl dbus default-jre dvisvgm fonts-droid-fallback inkscape krb5-locales libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libltdl-dev libmail-sendmail-perl libnet-dbus-perl libspreadsheet-parseexcel-perl libx11-protocol-perl linux-sysctl-defaults lmodern lynx psmisc ruby shared-mime-info tex-gyre texlive-plain-generic tipa tk wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 155 newly installed, 0 to remove and 0 not upgraded. Need to get 319 MB of archives. After unpacking 838 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 gawk arm64 1:5.3.2-1 [731 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.7.2-1 [95.7 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 poppler-data all 0.4.12-1 [1601 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.7-1 [857 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.7-1 [2001 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 media-types all 13.0.0 [29.3 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025b-5 [260 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.7-1 [1895 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.7-1 [761 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-9 [62.8 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-9 [871 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 bash-completion all 1:2.16.0-7 [319 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41.1-3 [98.1 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libtext-charwidth-perl arm64 0.04-11+b4 [9652 B] Get: 31 http://deb.debian.org/debian unstable/main arm64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 32 http://deb.debian.org/debian unstable/main arm64 ucf all 3.0052 [43.3 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.26 [91.8 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-5 [540 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 44 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.16-2 [100 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.26 [939 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.50-1 [275 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libfontenc1 arm64 1:1.1.8-1+b2 [22.5 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+25 [217 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 xfonts-utils arm64 1:7.7+7 [89.3 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libgs-common all 10.05.1~dfsg-3 [149 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libgs10-common all 10.05.1~dfsg-3 [479 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libavahi-common-data arm64 0.8-17 [113 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libavahi-common3 arm64 0.8-17 [44.9 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libdbus-1-3 arm64 1.16.2-2 [169 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libavahi-client3 arm64 0.8-17 [48.5 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.10-2 [1395 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 74 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 libcups2t64 arm64 2.4.10-4 [243 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-2.4 [318 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-2.4 [387 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libidn12 arm64 1.43-2 [47.0 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libijs-0.35 arm64 0.35-16 [15.3 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 libjbig2dec0 arm64 0.20-1+b3 [60.1 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-4 [173 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libopenjp2-7 arm64 2.5.3-2.1 [189 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libpaper2 arm64 2.2.5-0.3+b2 [16.6 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.7.0-5 [331 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.12-1 [343 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.12-1 [795 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libsm6 arm64 2:1.2.6-1 [36.4 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libxt6t64 arm64 1:1.2.1-1.3 [182 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libgs10 arm64 10.05.1~dfsg-3 [2356 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 ghostscript arm64 10.05.1~dfsg-3 [50.4 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libnetpbm11t64 arm64 2:11.11.01-1 [178 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 netpbm arm64 2:11.11.01-1 [2043 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 fig2dev arm64 1:3.2.9a-4 [417 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 fonts-lmodern all 2.005-1 [4540 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 tex-common all 6.19 [29.4 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 latex-make all 2.4.3-1 [1030 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libapache-pom-java all 33-2 [5852 B] Get: 109 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.1-7 [135 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libblas-dev arm64 3.12.1-7 [145 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.12-1 [27.0 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 libcairo2 arm64 1.18.4-1+b1 [483 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 libcommons-parent-java all 56-1 [10.8 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 libcommons-logging-java all 1.3.0-2 [68.6 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 libfontbox-java all 1:1.8.16-5 [211 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.84.4-3 [1428 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-7 [70.5 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 libgslcblas0 arm64 2.8+dfsg-5.1 [91.8 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 libgsl28 arm64 2.8+dfsg-5.1 [921 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 libgsl-dev arm64 2.8+dfsg-5.1 [1177 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 11.4.5-1 [465 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 libicu76 arm64 76.1-4 [9524 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 libkpathsea6 arm64 2025.20250727.75242+ds-4 [149 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 libtamuanova-0.2 arm64 0.2-5+b3 [8580 B] Get: 129 http://deb.debian.org/debian unstable/main arm64 libmath-tamuanova-perl arm64 1.0.2-4+b2 [13.1 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 libmpfi0 arm64 1.5.4+ds-4 [34.5 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 libpaper-utils arm64 2.2.5-0.3+b2 [16.4 kB] Get: 132 http://deb.debian.org/debian unstable/main arm64 libpdfbox-java all 1:1.8.16-5 [5527 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 libperl-dev arm64 5.40.1-6 [1019 kB] Get: 134 http://deb.debian.org/debian unstable/main arm64 libpotrace0 arm64 1.16-2+b2 [23.4 kB] Get: 135 http://deb.debian.org/debian unstable/main arm64 libptexenc1 arm64 2025.20250727.75242+ds-4 [49.5 kB] Get: 136 http://deb.debian.org/debian unstable/main arm64 libsynctex2 arm64 2025.20250727.75242+ds-4 [54.5 kB] Get: 137 http://deb.debian.org/debian unstable/main arm64 libteckit0 arm64 2.5.12+ds1-1+b1 [303 kB] Get: 138 http://deb.debian.org/debian unstable/main arm64 libtest-deep-perl all 1.205-1 [52.3 kB] Get: 139 http://deb.debian.org/debian unstable/main arm64 libtexlua53-5 arm64 2025.20250727.75242+ds-4 [90.8 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 libxmu6 arm64 2:1.1.3-3+b4 [55.7 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 libxpm4 arm64 1:3.5.17-1+b3 [53.4 kB] Get: 142 http://deb.debian.org/debian unstable/main arm64 libxaw7 arm64 2:1.0.16-1 [195 kB] Get: 143 http://deb.debian.org/debian unstable/main arm64 libxi6 arm64 2:1.8.2-1 [77.8 kB] Get: 144 http://deb.debian.org/debian unstable/main arm64 libzzip-0-13t64 arm64 0.13.78+dfsg.1-0.1 [59.4 kB] Get: 145 http://deb.debian.org/debian unstable/main arm64 preview-latex-style all 13.2-1.1 [350 kB] Get: 146 http://deb.debian.org/debian unstable/main arm64 t1utils arm64 1.41-4+b1 [57.6 kB] Get: 147 http://deb.debian.org/debian unstable/main arm64 texlive-binaries arm64 2025.20250727.75242+ds-4 [6818 kB] Get: 148 http://deb.debian.org/debian unstable/main arm64 xdg-utils all 1.2.1-2 [75.8 kB] Get: 149 http://deb.debian.org/debian unstable/main arm64 texlive-base all 2025.20250727-3 [23.1 MB] Get: 150 http://deb.debian.org/debian unstable/main arm64 texlive-fonts-recommended all 2025.20250727-3 [4991 kB] Get: 151 http://deb.debian.org/debian unstable/main arm64 texlive-lang-french all 2025.20250727-3 [149 MB] Get: 152 http://deb.debian.org/debian unstable/main arm64 texlive-latex-base all 2025.20250727-3 [1318 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 texlive-latex-recommended all 2025.20250727-3 [8454 kB] Get: 154 http://deb.debian.org/debian unstable/main arm64 texlive-pictures all 2025.20250727-3 [22.1 MB] Get: 155 http://deb.debian.org/debian unstable/main arm64 texlive-latex-extra all 2025.20250727-3 [27.4 MB] Fetched 319 MB in 2s (140 MB/s) Preconfiguring packages ... Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../libreadline8t64_8.3-3_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Setting up readline-common (8.3-3) ... Setting up libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package gawk. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20052 files and directories currently installed.) Preparing to unpack .../gawk_1%3a5.3.2-1_arm64.deb ... Unpacking gawk (1:5.3.2-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.7.2-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.2-1) ... Selecting previously unselected package poppler-data. Preparing to unpack .../poppler-data_0.4.12-1_all.deb ... Unpacking poppler-data (0.4.12-1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.7-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.7-1_arm64.deb ... Unpacking python3.13-minimal (3.13.7-1) ... Setting up libpython3.13-minimal:arm64 (3.13.7-1) ... Setting up libexpat1:arm64 (2.7.2-1) ... Setting up python3.13-minimal (3.13.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21113 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_arm64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.5.2-2_arm64.deb ... Unpacking libffi8:arm64 (3.5.2-2) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../5-libpython3.13-stdlib_3.13.7-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../6-python3.13_3.13.7-1_arm64.deb ... Unpacking python3.13 (3.13.7-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../7-libpython3-stdlib_3.13.7-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.13.7-1) ... Setting up python3-minimal (3.13.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22096 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.7-1_arm64.deb ... Unpacking python3 (3.13.7-1) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../001-libproc2-0_2%3a4.0.4-9_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.4-9_arm64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package bash-completion. Preparing to unpack .../004-bash-completion_1%3a2.16.0-7_all.deb ... Unpacking bash-completion (1:2.16.0-7) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../006-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/altree-1.3.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../altree_1.3.2-4_source.changes dpkg-buildpackage: info: source package altree dpkg-buildpackage: info: source version 1.3.2-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules execute_before_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/altree-1.3.2' /usr/bin/make -C Documentation distclean || true make[2]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' make[2]: Nothing to be done for 'distclean'. make[2]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' make[1]: Leaving directory '/build/reproducible-path/altree-1.3.2' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro" Checking if your kit is complete... Warning: the following files are missing in your kit: CUtils/c_sources/MYMETA.json CUtils/MYMETA.json MYMETA.json Please inform the author. MakeMaker (v7.70) Warning (non-fatal): Target 'dynamic' depends on targets in skipped section 'dynamic_lib' Warning (non-fatal): Target 'static' depends on targets in skipped section 'static_lib' Generating a Unix-style Makefile Writing Makefile for ALTree::CUtils Writing MYMETA.yml and MYMETA.json Generating a Unix-style Makefile Writing Makefile for ALTree::CUtils Writing MYMETA.yml and MYMETA.json Generating a Unix-style Makefile Writing Makefile for altree Writing MYMETA.yml and MYMETA.json debian/rules execute_before_dh_auto_build make[1]: Entering directory '/build/reproducible-path/altree-1.3.2' /usr/bin/make -C Documentation pdf make[2]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[3]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' make[3]: Nothing to be done for 'LU_WATCH_FILES_SAVE'. make[3]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' ======> building manual.pdf <====== Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 36. Package texdepends Warning: Diverting empty macro 'Ginclude@eps' (texdepends) Probably a bug in texdepends.sty. Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87. Chapter 1. LaTeX Warning: Reference `fig:altree' on page 2 undefined on input line 121. Package texdepends Warning: No 'fig/overview.pdftex' file (texdepends) using 1 for graphic dimensions on input line 124. Package texdepends Warning: Figure 'fig/overview.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 124. LaTeX Warning: Reference `fig:nesting_algo' on page 2 undefined on input line 143. Package natbib Warning: Citation `Bardel05' on page 2 undefined on input line 143. Package natbib Warning: Citation `Ge03' on page 2 undefined on input line 146. Package natbib Warning: Citation `Becker04' on page 2 undefined on input line 146. Package texdepends Warning: No 'fig/altree-q.pdftex' file (texdepends) using 1 for graphic dimensions on input line 150. Package texdepends Warning: Figure 'fig/altree-q.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 150. LaTeX Warning: `h' float specifier changed to `ht'. Package natbib Warning: Citation `Bardel05' on page 4 undefined on input line 180. Package natbib Warning: Citation `Stephens01' on page 5 undefined on input line 197. Package natbib Warning: Citation `Stephens03' on page 5 undefined on input line 197. Package natbib Warning: Citation `Becker04' on page 5 undefined on input line 198. 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Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605 \T1/ptm/m/n/10.95 Examples: $[]$ $[]$ LaTeX Warning: Reference `description_etiquette' on page 14 undefined on input line 632. LaTeX Warning: Reference `description_etiquette' on page 14 undefined on input line 633. Package natbib Warning: Citation `Bardel05' on page 14 undefined on input line 634. LaTeX Warning: Reference `description_etiquette' on page 15 undefined on input line 649. LaTeX Warning: Reference `description_etiquette' on page 15 undefined on input line 649. Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --data-qual|-q Underfull \hbox (badness 1281) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 remove the out-group se-quence for the Underfull \hbox (badness 5681) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 ancestral se-quence (only use-ful with Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --tree-building-program|-p Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --s-site-characters Underfull \hbox (badness 1565) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 print the tree with the char-ac-ter state Overfull \hbox (2.0805pt too wide) in paragraph at lines 664--698 [] LaTeX Warning: Reference `help' on page 16 undefined on input line 701. Underfull \hbox (badness 10000) in paragraph at lines 735--738 Underfull \hbox (badness 1622) in paragraph at lines 747--755 \T1/ptm/m/n/10.95 Example of such files are given in the test di-rec-tory. Thes Package natbib Warning: Citation `Ge03' on page 19 undefined on input line 830. Package natbib Warning: Citation `Becker04' on page 19 undefined on input line 830. LaTeX Warning: Reference `fig:option_b' on page 19 undefined on input line 846. LaTeX Warning: File `option_b.fig' not found on input line 852. Package texdepends Warning: No 'fig/option_b_1.pdftex' file (texdepends) using 1 for graphic dimensions on input line 852. Package texdepends Warning: Figure 'fig/option_b_1.fig' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 852. LaTeX Warning: File `option_b.fig' not found on input line 853. Package texdepends Warning: No 'fig/option_b_2.pdftex' file (texdepends) using 1 for graphic dimensions on input line 853. 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Underfull \hbox (badness 2662) in paragraph at lines 1188--1195 \T1/ptm/m/n/10.95 The files nec-es-sary for the phy-lo-ge-netic re-con-struc-ti Package texdepends Warning: No 'fig/association_paml.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1217. Package texdepends Warning: Figure 'fig/association_paml.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1217. Underfull \hbox (badness 10000) in paragraph at lines 1247--1249 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Package texdepends Warning: No 'fig/localisation_paml.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1252. Package texdepends Warning: Figure 'fig/localisation_paml.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1252. Chapter 7. Package texdepends Warning: Figure(s) missing. Check dependencies again. 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(rerunfilecheck) Rerun to get outlines right /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[3]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' ======> building fig/option_b.subfig.mk <====== make[3]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[3]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' ******************************************** *********** New build needed *************** ******************************************** New manual.aux file LU_rebuild_latex: new run needed (LaTeX message 'Rerun to get...') 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Rerun needed /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[5]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' make[5]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' ======> building manual.pdf <====== removed 'manual.pdf_NEED_REBUILD' removed 'manual.pdf.mk' Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 36. Package texdepends Warning: Diverting empty macro 'Ginclude@eps' (texdepends) Probably a bug in texdepends.sty. Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87. Chapter 1. Package natbib Warning: Citation `Bardel05' on page 3 undefined on input line 143. Package natbib Warning: Citation `Ge03' on page 3 undefined on input line 146. Package natbib Warning: Citation `Becker04' on page 3 undefined on input line 146. LaTeX Warning: `h' float specifier changed to `ht'. Package natbib Warning: Citation `Bardel05' on page 4 undefined on input line 180. Package natbib Warning: Citation `Stephens01' on page 4 undefined on input line 197. Package natbib Warning: Citation `Stephens03' on page 4 undefined on input line 197. Package natbib Warning: Citation `Becker04' on page 4 undefined on input line 198. Package natbib Warning: Citation `Swofford02' on page 4 undefined on input line 199. Package natbib Warning: Citation `Felsenstein04' on page 4 undefined on input line 200. Package natbib Warning: Citation `YangPAML' on page 4 undefined on input line 200. Underfull \hbox (badness 1454) in paragraph at lines 196--201 []\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10. Chapter 2. Package natbib Warning: Citation `Swofford02' on page 7 undefined on input line 278. Package natbib Warning: Citation `Felsenstein04' on page 7 undefined on input line 281. Underfull \hbox (badness 1142) in paragraph at lines 281--284 []\T1/pcr/m/n/10.95 phylip \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail- Package natbib Warning: Citation `YangPAML' on page 7 undefined on input line 284. Package natbib Warning: Citation `Guindon03' on page 7 undefined on input line 288. Underfull \hbox (badness 2486) in paragraph at lines 284--290 []\T1/pcr/m/n/10.95 paml \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail-ab Underfull \hbox (badness 10000) in paragraph at lines 314--315 Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 369--369 []|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370 [] Underfull \hbox (badness 10000) in paragraph at lines 396--397 Underfull \hbox (badness 10000) in paragraph at lines 400--401 Underfull \hbox (badness 10000) in paragraph at lines 416--417 Underfull \hbox (badness 1112) in paragraph at lines 505--507 []\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes Chapter 4. Overfull \hbox (2.0805pt too wide) in paragraph at lines 537--553 [] Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605 \T1/ptm/m/n/10.95 Examples: $[]$ $[]$ Package natbib Warning: Citation `Bardel05' on page 14 undefined on input line 634. Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --data-qual|-q Underfull \hbox (badness 1281) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 remove the out-group se-quence for the Underfull \hbox (badness 5681) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 ancestral se-quence (only use-ful with Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --tree-building-program|-p Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --s-site-characters Underfull \hbox (badness 1565) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 print the tree with the char-ac-ter state Overfull \hbox (2.0805pt too wide) in paragraph at lines 664--698 [] Underfull \hbox (badness 10000) in paragraph at lines 735--738 Underfull \hbox (badness 1622) in paragraph at lines 747--755 \T1/ptm/m/n/10.95 Example of such files are given in the test di-rec-tory. Thes Package natbib Warning: Citation `Ge03' on page 19 undefined on input line 830. Package natbib Warning: Citation `Becker04' on page 19 undefined on input line 830. Package texdepends Warning: No 'fig/option_b_1.pdftex' file (texdepends) using 1 for graphic dimensions on input line 852. Package texdepends Warning: Figure 'fig/option_b_1.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 852. Package texdepends Warning: No 'fig/option_b_2.pdftex' file (texdepends) using 1 for graphic dimensions on input line 853. Package texdepends Warning: Figure 'fig/option_b_2.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 853. Overfull \hbox (15.23479pt too wide) in paragraph at lines 850--865 [][] Package natbib Warning: Citation `Bardel05' on page 21 undefined on input line 921. Package natbib Warning: Citation `Bardel05' on page 21 undefined on input line 941. Chapter 6. Underfull \hbox (badness 5519) in paragraph at lines 968--971 []\T1/ptm/b/n/10.95 create_file \T1/ptm/m/n/10.95 which con-tains files and in- Underfull \hbox (badness 10000) in paragraph at lines 1024--1026 []\T1/ptm/m/n/10.95 the two \T1/pcr/m/n/10.95 FamHap \T1/ptm/m/n/10.95 out-put Underfull \hbox (badness 10000) in paragraph at lines 1125--1127 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Package natbib Warning: Citation `Guindon03' on page 26 undefined on input line 1181. Underfull \hbox (badness 2662) in paragraph at lines 1188--1195 \T1/ptm/m/n/10.95 The files nec-es-sary for the phy-lo-ge-netic re-con-struc-ti Underfull \hbox (badness 10000) in paragraph at lines 1247--1249 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Chapter 7. Underfull \hbox (badness 10000) in paragraph at lines 58--61 []\T1/ptm/m/n/10.95 Z Yang. 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(natbib) Rerun to get citations correct. /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[5]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' make[5]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[5]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' ******************************************** *********** New build needed *************** ******************************************** New manual.aux file LU_rebuild_latex: new run needed (LaTeX message 'Rerun to get...') 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Rerun needed /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[7]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' make[7]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' ======> building manual.pdf <====== removed 'manual.pdf_NEED_REBUILD' removed 'manual.pdf.mk' Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 36. Package texdepends Warning: Diverting empty macro 'Ginclude@eps' (texdepends) Probably a bug in texdepends.sty. Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87. Chapter 1. LaTeX Warning: `h' float specifier changed to `ht'. Underfull \hbox (badness 1454) in paragraph at lines 196--201 []\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10. Chapter 2. Underfull \hbox (badness 10000) in paragraph at lines 314--315 Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 369--369 []|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370 [] Underfull \hbox (badness 10000) in paragraph at lines 396--397 Underfull \hbox (badness 10000) in paragraph at lines 400--401 Underfull \hbox (badness 10000) in paragraph at lines 416--417 Underfull \hbox (badness 1112) in paragraph at lines 505--507 []\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes Chapter 4. Overfull \hbox (2.0805pt too wide) in paragraph at lines 537--553 [] Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605 \T1/ptm/m/n/10.95 Examples: $[]$ $[]$ Chapter 5. 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Phy-lo-ge-netic anal-y-sis by max-i-mum like-li-ho /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[7]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' make[7]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[7]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' ******************************************** *********** New build needed *************** ******************************************** New manual.aux file LU_rebuild_latex: new run needed (LaTeX message 'Rerun to get...') ******************************************** /usr/bin/make LU_REC_LEVEL=4 manual.pdf make[8]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' ======> building manual.bbl <====== This is BibTeX, Version 0.99d (TeX Live 2025/Debian) The top-level auxiliary file: manual.aux The style file: plainnat.bst Database file #1: stage.bib Warning--empty year in YangPAML (There was 1 warning) Previous compilation failed. Rerun needed /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[9]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' make[9]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' ======> building manual.pdf <====== removed 'manual.pdf_NEED_REBUILD' removed 'manual.pdf.mk' Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 36. Package texdepends Warning: Diverting empty macro 'Ginclude@eps' (texdepends) Probably a bug in texdepends.sty. Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87. Chapter 1. LaTeX Warning: `h' float specifier changed to `ht'. Underfull \hbox (badness 1454) in paragraph at lines 196--201 []\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10. Chapter 2. Underfull \hbox (badness 10000) in paragraph at lines 314--315 Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 369--369 []|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370 [] Underfull \hbox (badness 10000) in paragraph at lines 396--397 Underfull \hbox (badness 10000) in paragraph at lines 400--401 Underfull \hbox (badness 10000) in paragraph at lines 416--417 Underfull \hbox (badness 1112) in paragraph at lines 505--507 []\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes Chapter 4. Overfull \hbox (2.0805pt too wide) in paragraph at lines 537--553 [] Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605 \T1/ptm/m/n/10.95 Examples: $[]$ $[]$ Chapter 5. 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Underfull \hbox (badness 10000) in paragraph at lines 58--61 /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[9]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' make[9]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[9]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' /usr/bin/make LU_REC_LEVEL=5 manual.pdf make[10]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' make[10]: 'manual.pdf' is up to date. make[10]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' make[9]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' make[8]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' make[7]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' make[6]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' make[5]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' make[4]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' make[3]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' make[2]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' make[1]: Leaving directory '/build/reproducible-path/altree-1.3.2' dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/altree-1.3.2' make[2]: Entering directory '/build/reproducible-path/altree-1.3.2/CUtils' make -C c_sources make[3]: Entering directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" chisq.c Running Mkbootstrap for CUtils () cp ALTree/SitePerTree.pm blib/lib/ALTree/SitePerTree.pm cp ALTree/SiteSens.pm blib/lib/ALTree/SiteSens.pm cp ALTree/Import.pm blib/lib/ALTree/Import.pm cp ALTree/Foret.pm blib/lib/ALTree/Foret.pm cp ALTree/Tree.pm blib/lib/ALTree/Tree.pm cp ALTree/Base.pm blib/lib/ALTree/Base.pm cp ALTree/Site.pm blib/lib/ALTree/Site.pm cp ALTree/SiteSensPerForet.pm blib/lib/ALTree/SiteSensPerForet.pm cp ALTree/SiteSensPerTree.pm blib/lib/ALTree/SiteSensPerTree.pm cp ALTree/Chi2.pm blib/lib/ALTree/Chi2.pm cp ALTree/Nanova.pm blib/lib/ALTree/Nanova.pm cp ALTree/Node.pm blib/lib/ALTree/Node.pm cp ALTree/SiteCollection.pm blib/lib/ALTree/SiteCollection.pm cp ALTree/Input.pm blib/lib/ALTree/Input.pm cp ALTree/to_rewrite.pm blib/lib/ALTree/to_rewrite.pm cp ALTree/Sens.pm blib/lib/ALTree/Sens.pm cp ALTree/Utils.pm blib/lib/ALTree/Utils.pm cp ALTree/SitePerForet.pm blib/lib/ALTree/SitePerForet.pm aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" double_permutation.c aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" fisher.c aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" mt19937ar.c aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" myrand.c aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" resampling.c "/usr/bin/perl" "/usr/share/perl/5.40.1/ExtUtils/xsubpp" -typemap '/usr/share/perl/5.40/ExtUtils/typemap' CUtils.xs > CUtils.xsc aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" rhyper.c aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" stats.c chmod 644 "CUtils.bs" aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" z.c "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644 cp lib/ALTree/CUtils.pm ../blib/lib/ALTree/CUtils.pm AutoSplitting ../blib/lib/ALTree/CUtils.pm (../blib/lib/auto/ALTree/CUtils) chisq.c: In function 'pochisq': chisq.c:77:1: warning: old-style function definition [-Wold-style-definition] 77 | pochisq (x, df) | ^~~~~~~ chisq.c: In function 'critchi': chisq.c:129:1: warning: old-style function definition [-Wold-style-definition] 129 | critchi (p, df) | ^~~~~~~ z.c: In function 'poz': z.c:44:1: warning: old-style function definition [-Wold-style-definition] 44 | poz (z) | ^~~ z.c: In function 'critz': z.c:91:1: warning: old-style function definition [-Wold-style-definition] 91 | critz (p) | ^~~~~ z.c: At top level: z.c:12:13: warning: 'sccsfid' defined but not used [-Wunused-variable] 12 | static char sccsfid[] = "@(#) z.c 5.1 (|stat) 12/26/85"; | ^~~~~~~ Please specify prototyping behavior for CUtils.xs (see perlxs manual) mv CUtils.xsc CUtils.c aarch64-linux-gnu-gcc -c -ggdb3 -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"1.1\" -DXS_VERSION=\"1.1\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" CUtils.c In function 'pval_min', inlined from 'double_permutation' at double_permutation.c:182:19: double_permutation.c:125:20: warning: '*(datatype_t *)local' may be used uninitialized [-Wmaybe-uninitialized] 125 | datatype_t ret=rep[0]; | ^~~ ar cr libaltree-cutils.a chisq.o double_permutation.o fisher.o mt19937ar.o myrand.o resampling.o rhyper.o stats.o z.o : libaltree-cutils.a make[3]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' make[3]: Entering directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' rm -f ../blib/arch/auto/ALTree/CUtils/CUtils.so aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -shared -L/usr/local/lib -fstack-protector-strong CUtils.o -o ../blib/arch/auto/ALTree/CUtils/CUtils.so c_sources/libaltree-cutils.a \ -lm -lpthread -lgsl -lblas \ /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. chmod 755 ../blib/arch/auto/ALTree/CUtils/CUtils.so Manifying 1 pod document make[2]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils' cp progs/altree-add-S blib/script/altree-add-S cp progs/altree-convert blib/script/altree-convert cp progs/altree blib/script/altree "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-add-S "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-convert Manifying 3 pod documents make[1]: Leaving directory '/build/reproducible-path/altree-1.3.2' dh_auto_test make -j12 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/altree-1.3.2' make[2]: Entering directory '/build/reproducible-path/altree-1.3.2/CUtils' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644 make[3]: Entering directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' Manifying 1 pod document make[2]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils' make[2]: Entering directory '/build/reproducible-path/altree-1.3.2/CUtils' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644 make[3]: Entering directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' make[3]: Entering directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' No tests defined for ALTree::CUtils extension. make[3]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, '../blib/lib', '../blib/arch')" t/*.t t/ALTree-CUtils.t ....... 1..1 ok 1 - use ALTree::CUtils; ok t/double_permutation.t .. 1..3 ok 1 - use ALTree::CUtils; ok 2 - undef when bad args ok 3 - double_permutation ok All tests successful. Files=2, Tests=4, 0 wallclock secs ( 0.03 usr 0.00 sys + 0.12 cusr 0.01 csys = 0.16 CPU) Result: PASS make[2]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/ALTree.t .. 1..1 ok 1 - use ALTree::Import; ok All tests successful. Files=1, Tests=1, 1 wallclock secs ( 0.02 usr 0.00 sys + 0.08 cusr 0.02 csys = 0.12 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/altree-1.3.2' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j12 install DESTDIR=/build/reproducible-path/altree-1.3.2/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/altree-1.3.2' make[2]: Entering directory '/build/reproducible-path/altree-1.3.2/CUtils' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644 make[3]: Entering directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' Manifying 1 pod document make[2]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils' Manifying 3 pod documents Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/auto/ALTree/CUtils/CUtils.so Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/CUtils.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/SitePerForet.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Utils.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Sens.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/to_rewrite.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Input.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/SiteCollection.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Node.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Nanova.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Chi2.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/SiteSensPerTree.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/SiteSensPerForet.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Site.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Base.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Tree.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Foret.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Import.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/SiteSens.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/SitePerTree.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/auto/ALTree/CUtils/autosplit.ix Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/share/man/man1/altree-convert.1p Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/share/man/man1/altree-add-S.1p Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/share/man/man1/altree.1p Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/share/man/man3/ALTree::CUtils.3pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/bin/altree-add-S Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/bin/altree Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/bin/altree-convert make[1]: Leaving directory '/build/reproducible-path/altree-1.3.2' dh_install debian/rules execute_after_dh_install-arch make[1]: Entering directory '/build/reproducible-path/altree-1.3.2' set -e \ ; cd debian/altree/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/ \ ; for file in Chi2.pm Import.pm Input.pm Node.pm SitePerForet.pm SiteSensPerTree.pm Tree.pm to_rewrite.pm \ ; do iconv -f ISO-8859-1 -t UTF-8 < "${file}" > "${file}.conv" \ ; mv -vf "${file}.conv" "${file}" \ ; done renamed 'Chi2.pm.conv' -> 'Chi2.pm' renamed 'Import.pm.conv' -> 'Import.pm' renamed 'Input.pm.conv' -> 'Input.pm' renamed 'Node.pm.conv' -> 'Node.pm' renamed 'SitePerForet.pm.conv' -> 'SitePerForet.pm' renamed 'SiteSensPerTree.pm.conv' -> 'SiteSensPerTree.pm' renamed 'Tree.pm.conv' -> 'Tree.pm' renamed 'to_rewrite.pm.conv' -> 'to_rewrite.pm' make[1]: Leaving directory '/build/reproducible-path/altree-1.3.2' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/altree-1.3.2' dh_compress --exclude=.pdf make[1]: Leaving directory '/build/reproducible-path/altree-1.3.2' dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/altree/usr/lib/aarch64-linux-gnu/perl5/5.40/auto/ALTree/CUtils/CUtils.so was not linked against libblas.so.3 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'altree-dbgsym' in '../altree-dbgsym_1.3.2-4_arm64.deb'. dpkg-deb: building package 'altree' in '../altree_1.3.2-4_arm64.deb'. dpkg-deb: building package 'altree-examples' in '../altree-examples_1.3.2-4_all.deb'. dpkg-genbuildinfo --build=binary -O../altree_1.3.2-4_arm64.buildinfo dpkg-genchanges --build=binary -O../altree_1.3.2-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/479061 and its subdirectories I: Current time: Wed Sep 17 23:36:43 -12 2025 I: pbuilder-time-stamp: 1758195403 Thu Sep 18 11:36:43 UTC 2025 I: Signing ./b1/altree_1.3.2-4_arm64.buildinfo as altree_1.3.2-4_arm64.buildinfo.asc Thu Sep 18 11:36:43 UTC 2025 I: Signed ./b1/altree_1.3.2-4_arm64.buildinfo as ./b1/altree_1.3.2-4_arm64.buildinfo.asc Thu Sep 18 11:36:43 UTC 2025 - build #1 for altree/unstable/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Thu Sep 18 11:36:43 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-e8iXB1o6, removing. /srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G: total 16 -rw-rw-r-- 1 jenkins jenkins 2535 Sep 17 19:14 altree_1.3.2-4.dsc drwxrwxr-x 2 jenkins jenkins 4096 Sep 18 11:36 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 18 11:29 b2 -rw------- 1 jenkins jenkins 3637 Sep 18 11:29 rbuildlog.kUeGPyk /srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G/b1: total 1172 -rw-r--r-- 1 jenkins jenkins 354740 Sep 18 11:36 altree-dbgsym_1.3.2-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 330628 Sep 18 11:36 altree-examples_1.3.2-4_all.deb -rw-r--r-- 1 jenkins jenkins 8600 Sep 18 11:36 altree_1.3.2-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2535 Sep 18 11:36 altree_1.3.2-4.dsc -rw-r--r-- 1 jenkins jenkins 8970 Sep 18 11:36 altree_1.3.2-4_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 9852 Sep 18 11:36 altree_1.3.2-4_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1869 Sep 18 11:36 altree_1.3.2-4_arm64.changes -rw-r--r-- 1 jenkins jenkins 341528 Sep 18 11:36 altree_1.3.2-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 1371 Sep 18 11:36 altree_1.3.2-4_source.changes -rw-r--r-- 1 jenkins jenkins 117683 Sep 18 11:36 build.log /srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G/b2: total 0 Thu Sep 18 11:36:46 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Sep 17 23:29:07 -12 2025 I: pbuilder-time-stamp: 1758194947 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [altree_1.3.2-4.dsc] I: copying [./altree_1.3.2.orig.tar.gz] I: copying [./altree_1.3.2-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./altree_1.3.2-4.dsc: no acceptable signature found dpkg-source: info: extracting altree in altree-1.3.2 dpkg-source: info: unpacking altree_1.3.2.orig.tar.gz dpkg-source: info: unpacking altree_1.3.2-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc-15.patch dpkg-source: info: applying typo.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/479061/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='47258fd50b31491899cf6abb9377f0ff' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='479061' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G/pbuilderrc_8Fvh --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G/b1 --logfile b1/build.log altree_1.3.2-4.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/479061/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: bash-completion, debhelper-compat (= 13), perl:native, perl-xs-dev, latex-make, ghostscript, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, libmath-tamuanova-perl, libgsl-dev, libblas-dev | libblas.so, libtest-deep-perl, fig2dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on bash-completion; however: Package bash-completion is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on perl:native. pbuilder-satisfydepends-dummy depends on perl-xs-dev; however: Package perl-xs-dev is not installed. pbuilder-satisfydepends-dummy depends on latex-make; however: Package latex-make is not installed. pbuilder-satisfydepends-dummy depends on ghostscript; however: Package ghostscript is not installed. pbuilder-satisfydepends-dummy depends on texlive-lang-french; however: Package texlive-lang-french is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. pbuilder-satisfydepends-dummy depends on libmath-tamuanova-perl; however: Package libmath-tamuanova-perl is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libblas-dev | libblas.so; however: Package libblas-dev is not installed. Package libblas.so is not installed. pbuilder-satisfydepends-dummy depends on libtest-deep-perl; however: Package libtest-deep-perl is not installed. pbuilder-satisfydepends-dummy depends on fig2dev; however: Package fig2dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bash-completion{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} fig2dev{a} file{a} fontconfig-config{a} fonts-lmodern{a} fonts-urw-base35{a} gawk{a} gettext{a} gettext-base{a} ghostscript{a} groff-base{a} intltool-debian{a} latex-make{a} libapache-pom-java{a} libarchive-zip-perl{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libblas-dev{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2t64{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontbox-java{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libgs-common{a} libgs10{a} libgs10-common{a} libgsl-dev{a} libgsl28{a} libgslcblas0{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libice6{a} libicu76{a} libidn12{a} libidn2-0{a} libijs-0.35{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkpathsea6{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libmath-tamuanova-perl{a} libmpfi0{a} libnetpbm11t64{a} libopenjp2-7{a} libp11-kit0{a} libpaper-utils{a} libpaper2{a} libpdfbox-java{a} libperl-dev{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpotrace0{a} libproc2-0{a} libptexenc1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libsharpyuv0{a} libsm6{a} libsynctex2{a} libtamuanova-0.2{a} libtasn1-6{a} libteckit0{a} libtest-deep-perl{a} libtexlua53-5{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libtiff6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2-16{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libzzip-0-13t64{a} m4{a} man-db{a} media-types{a} netbase{a} netpbm{a} po-debconf{a} poppler-data{a} preview-latex-style{a} procps{a} python3{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-lang-french{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} tzdata{a} ucf{a} x11-common{a} xdg-utils{a} xfonts-encodings{a} xfonts-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl dbus default-jre dvisvgm fonts-droid-fallback inkscape krb5-locales libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libltdl-dev libmail-sendmail-perl libnet-dbus-perl libspreadsheet-parseexcel-perl libx11-protocol-perl linux-sysctl-defaults lmodern lynx psmisc ruby shared-mime-info tex-gyre texlive-plain-generic tipa tk wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 155 newly installed, 0 to remove and 0 not upgraded. Need to get 319 MB of archives. After unpacking 838 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 gawk arm64 1:5.3.2-1 [731 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.7.2-1 [95.7 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 poppler-data all 0.4.12-1 [1601 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.7-1 [857 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.7-1 [2001 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 media-types all 13.0.0 [29.3 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025b-5 [260 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.7-1 [1895 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.7-1 [761 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-9 [62.8 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-9 [871 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 bash-completion all 1:2.16.0-7 [319 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41.1-3 [98.1 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libtext-charwidth-perl arm64 0.04-11+b4 [9652 B] Get: 31 http://deb.debian.org/debian unstable/main arm64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 32 http://deb.debian.org/debian unstable/main arm64 ucf all 3.0052 [43.3 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.26 [91.8 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-5 [540 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 44 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.16-2 [100 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.26 [939 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.50-1 [275 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libfontenc1 arm64 1:1.1.8-1+b2 [22.5 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+25 [217 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 xfonts-utils arm64 1:7.7+7 [89.3 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libgs-common all 10.05.1~dfsg-3 [149 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libgs10-common all 10.05.1~dfsg-3 [479 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libavahi-common-data arm64 0.8-17 [113 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libavahi-common3 arm64 0.8-17 [44.9 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libdbus-1-3 arm64 1.16.2-2 [169 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libavahi-client3 arm64 0.8-17 [48.5 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.10-2 [1395 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 74 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 libcups2t64 arm64 2.4.10-4 [243 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-2.4 [318 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-2.4 [387 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libidn12 arm64 1.43-2 [47.0 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libijs-0.35 arm64 0.35-16 [15.3 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 libjbig2dec0 arm64 0.20-1+b3 [60.1 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-4 [173 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libopenjp2-7 arm64 2.5.3-2.1 [189 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libpaper2 arm64 2.2.5-0.3+b2 [16.6 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.7.0-5 [331 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.12-1 [343 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.12-1 [795 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libsm6 arm64 2:1.2.6-1 [36.4 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libxt6t64 arm64 1:1.2.1-1.3 [182 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libgs10 arm64 10.05.1~dfsg-3 [2356 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 ghostscript arm64 10.05.1~dfsg-3 [50.4 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libnetpbm11t64 arm64 2:11.11.01-1 [178 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 netpbm arm64 2:11.11.01-1 [2043 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 fig2dev arm64 1:3.2.9a-4 [417 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 fonts-lmodern all 2.005-1 [4540 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 tex-common all 6.19 [29.4 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 latex-make all 2.4.3-1 [1030 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libapache-pom-java all 33-2 [5852 B] Get: 109 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.1-7 [135 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libblas-dev arm64 3.12.1-7 [145 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.12-1 [27.0 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 libcairo2 arm64 1.18.4-1+b1 [483 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 libcommons-parent-java all 56-1 [10.8 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 libcommons-logging-java all 1.3.0-2 [68.6 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 libfontbox-java all 1:1.8.16-5 [211 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.84.4-3 [1428 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-7 [70.5 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 libgslcblas0 arm64 2.8+dfsg-5.1 [91.8 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 libgsl28 arm64 2.8+dfsg-5.1 [921 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 libgsl-dev arm64 2.8+dfsg-5.1 [1177 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 11.4.5-1 [465 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 libicu76 arm64 76.1-4 [9524 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 libkpathsea6 arm64 2025.20250727.75242+ds-4 [149 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 libtamuanova-0.2 arm64 0.2-5+b3 [8580 B] Get: 129 http://deb.debian.org/debian unstable/main arm64 libmath-tamuanova-perl arm64 1.0.2-4+b2 [13.1 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 libmpfi0 arm64 1.5.4+ds-4 [34.5 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 libpaper-utils arm64 2.2.5-0.3+b2 [16.4 kB] Get: 132 http://deb.debian.org/debian unstable/main arm64 libpdfbox-java all 1:1.8.16-5 [5527 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 libperl-dev arm64 5.40.1-6 [1019 kB] Get: 134 http://deb.debian.org/debian unstable/main arm64 libpotrace0 arm64 1.16-2+b2 [23.4 kB] Get: 135 http://deb.debian.org/debian unstable/main arm64 libptexenc1 arm64 2025.20250727.75242+ds-4 [49.5 kB] Get: 136 http://deb.debian.org/debian unstable/main arm64 libsynctex2 arm64 2025.20250727.75242+ds-4 [54.5 kB] Get: 137 http://deb.debian.org/debian unstable/main arm64 libteckit0 arm64 2.5.12+ds1-1+b1 [303 kB] Get: 138 http://deb.debian.org/debian unstable/main arm64 libtest-deep-perl all 1.205-1 [52.3 kB] Get: 139 http://deb.debian.org/debian unstable/main arm64 libtexlua53-5 arm64 2025.20250727.75242+ds-4 [90.8 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 libxmu6 arm64 2:1.1.3-3+b4 [55.7 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 libxpm4 arm64 1:3.5.17-1+b3 [53.4 kB] Get: 142 http://deb.debian.org/debian unstable/main arm64 libxaw7 arm64 2:1.0.16-1 [195 kB] Get: 143 http://deb.debian.org/debian unstable/main arm64 libxi6 arm64 2:1.8.2-1 [77.8 kB] Get: 144 http://deb.debian.org/debian unstable/main arm64 libzzip-0-13t64 arm64 0.13.78+dfsg.1-0.1 [59.4 kB] Get: 145 http://deb.debian.org/debian unstable/main arm64 preview-latex-style all 13.2-1.1 [350 kB] Get: 146 http://deb.debian.org/debian unstable/main arm64 t1utils arm64 1.41-4+b1 [57.6 kB] Get: 147 http://deb.debian.org/debian unstable/main arm64 texlive-binaries arm64 2025.20250727.75242+ds-4 [6818 kB] Get: 148 http://deb.debian.org/debian unstable/main arm64 xdg-utils all 1.2.1-2 [75.8 kB] Get: 149 http://deb.debian.org/debian unstable/main arm64 texlive-base all 2025.20250727-3 [23.1 MB] Get: 150 http://deb.debian.org/debian unstable/main arm64 texlive-fonts-recommended all 2025.20250727-3 [4991 kB] Get: 151 http://deb.debian.org/debian unstable/main arm64 texlive-lang-french all 2025.20250727-3 [149 MB] Get: 152 http://deb.debian.org/debian unstable/main arm64 texlive-latex-base all 2025.20250727-3 [1318 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 texlive-latex-recommended all 2025.20250727-3 [8454 kB] Get: 154 http://deb.debian.org/debian unstable/main arm64 texlive-pictures all 2025.20250727-3 [22.1 MB] Get: 155 http://deb.debian.org/debian unstable/main arm64 texlive-latex-extra all 2025.20250727-3 [27.4 MB] Fetched 319 MB in 2s (140 MB/s) Preconfiguring packages ... Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../libreadline8t64_8.3-3_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Setting up readline-common (8.3-3) ... Setting up libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package gawk. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20052 files and directories currently installed.) Preparing to unpack .../gawk_1%3a5.3.2-1_arm64.deb ... Unpacking gawk (1:5.3.2-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.7.2-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.2-1) ... Selecting previously unselected package poppler-data. Preparing to unpack .../poppler-data_0.4.12-1_all.deb ... Unpacking poppler-data (0.4.12-1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.7-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.7-1_arm64.deb ... Unpacking python3.13-minimal (3.13.7-1) ... Setting up libpython3.13-minimal:arm64 (3.13.7-1) ... Setting up libexpat1:arm64 (2.7.2-1) ... Setting up python3.13-minimal (3.13.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21113 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_arm64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22096 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.7-1_arm64.deb ... Unpacking python3 (3.13.7-1) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../001-libproc2-0_2%3a4.0.4-9_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.4-9_arm64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package bash-completion. Preparing to unpack .../004-bash-completion_1%3a2.16.0-7_all.deb ... Unpacking bash-completion (1:2.16.0-7) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../006-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../009-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.41.1-3_arm64.deb ... Unpacking bsdextrautils (2.41.1-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../012-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package libtext-charwidth-perl:arm64. Preparing to unpack .../014-libtext-charwidth-perl_0.04-11+b4_arm64.deb ... Unpacking libtext-charwidth-perl:arm64 (0.04-11+b4) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../015-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... Selecting previously unselected package ucf. Preparing to unpack .../016-ucf_3.0052_all.deb ... Moving old data out of the way Unpacking ucf (3.0052) ... Selecting previously unselected package m4. Preparing to unpack .../017-m4_1.4.20-1_arm64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../018-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../019-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../020-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/altree-1.3.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../altree_1.3.2-4_source.changes dpkg-buildpackage: info: source package altree dpkg-buildpackage: info: source version 1.3.2-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules execute_before_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/altree-1.3.2' /usr/bin/make -C Documentation distclean || true make[2]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' make[2]: Nothing to be done for 'distclean'. make[2]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' make[1]: Leaving directory '/build/reproducible-path/altree-1.3.2' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro" Checking if your kit is complete... Warning: the following files are missing in your kit: CUtils/c_sources/MYMETA.json CUtils/MYMETA.json MYMETA.json Please inform the author. MakeMaker (v7.70) Warning (non-fatal): Target 'dynamic' depends on targets in skipped section 'dynamic_lib' Warning (non-fatal): Target 'static' depends on targets in skipped section 'static_lib' Generating a Unix-style Makefile Writing Makefile for ALTree::CUtils Writing MYMETA.yml and MYMETA.json Generating a Unix-style Makefile Writing Makefile for ALTree::CUtils Writing MYMETA.yml and MYMETA.json Generating a Unix-style Makefile Writing Makefile for altree Writing MYMETA.yml and MYMETA.json debian/rules execute_before_dh_auto_build make[1]: Entering directory '/build/reproducible-path/altree-1.3.2' /usr/bin/make -C Documentation pdf make[2]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[3]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' make[3]: Nothing to be done for 'LU_WATCH_FILES_SAVE'. make[3]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' ======> building manual.pdf <====== Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 36. Package texdepends Warning: Diverting empty macro 'Ginclude@eps' (texdepends) Probably a bug in texdepends.sty. Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87. Chapter 1. LaTeX Warning: Reference `fig:altree' on page 2 undefined on input line 121. Package texdepends Warning: No 'fig/overview.pdftex' file (texdepends) using 1 for graphic dimensions on input line 124. Package texdepends Warning: Figure 'fig/overview.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 124. 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Package natbib Warning: Citation `Swofford02' on page 5 undefined on input line 199. Package natbib Warning: Citation `Felsenstein04' on page 5 undefined on input line 200. Package natbib Warning: Citation `YangPAML' on page 5 undefined on input line 200. Underfull \hbox (badness 1454) in paragraph at lines 196--201 []\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10. Chapter 2. Package natbib Warning: Citation `Swofford02' on page 7 undefined on input line 278. Package natbib Warning: Citation `Felsenstein04' on page 7 undefined on input line 281. Underfull \hbox (badness 1142) in paragraph at lines 281--284 []\T1/pcr/m/n/10.95 phylip \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail- Package natbib Warning: Citation `YangPAML' on page 7 undefined on input line 284. Package natbib Warning: Citation `Guindon03' on page 7 undefined on input line 288. Underfull \hbox (badness 2486) in paragraph at lines 284--290 []\T1/pcr/m/n/10.95 paml \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail-ab Underfull \hbox (badness 10000) in paragraph at lines 314--315 Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 369--369 []|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370 [] Underfull \hbox (badness 10000) in paragraph at lines 396--397 Underfull \hbox (badness 10000) in paragraph at lines 400--401 Underfull \hbox (badness 10000) in paragraph at lines 416--417 Underfull \hbox (badness 1112) in paragraph at lines 505--507 []\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes Chapter 4. Overfull \hbox (2.0805pt too wide) in paragraph at lines 537--553 [] LaTeX Warning: Reference `help' on page 13 undefined on input line 564. Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605 \T1/ptm/m/n/10.95 Examples: $[]$ $[]$ LaTeX Warning: Reference `description_etiquette' on page 14 undefined on input line 632. LaTeX Warning: Reference `description_etiquette' on page 14 undefined on input line 633. Package natbib Warning: Citation `Bardel05' on page 14 undefined on input line 634. LaTeX Warning: Reference `description_etiquette' on page 15 undefined on input line 649. LaTeX Warning: Reference `description_etiquette' on page 15 undefined on input line 649. Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --data-qual|-q Underfull \hbox (badness 1281) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 remove the out-group se-quence for the Underfull \hbox (badness 5681) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 ancestral se-quence (only use-ful with Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --tree-building-program|-p Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --s-site-characters Underfull \hbox (badness 1565) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 print the tree with the char-ac-ter state Overfull \hbox (2.0805pt too wide) in paragraph at lines 664--698 [] LaTeX Warning: Reference `help' on page 16 undefined on input line 701. Underfull \hbox (badness 10000) in paragraph at lines 735--738 Underfull \hbox (badness 1622) in paragraph at lines 747--755 \T1/ptm/m/n/10.95 Example of such files are given in the test di-rec-tory. Thes Package natbib Warning: Citation `Ge03' on page 19 undefined on input line 830. Package natbib Warning: Citation `Becker04' on page 19 undefined on input line 830. LaTeX Warning: Reference `fig:option_b' on page 19 undefined on input line 846. LaTeX Warning: File `option_b.fig' not found on input line 852. Package texdepends Warning: No 'fig/option_b_1.pdftex' file (texdepends) using 1 for graphic dimensions on input line 852. Package texdepends Warning: Figure 'fig/option_b_1.fig' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 852. LaTeX Warning: File `option_b.fig' not found on input line 853. Package texdepends Warning: No 'fig/option_b_2.pdftex' file (texdepends) using 1 for graphic dimensions on input line 853. 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Underfull \hbox (badness 10000) in paragraph at lines 1125--1127 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Package texdepends Warning: No 'fig/localisation_paup.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1130. Package texdepends Warning: Figure 'fig/localisation_paup.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1130. Package texdepends Warning: No 'fig/association_phylip.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1168. Package texdepends Warning: Figure 'fig/association_phylip.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1168. Package natbib Warning: Citation `Guindon03' on page 28 undefined on input line 1181. Underfull \hbox (badness 2662) in paragraph at lines 1188--1195 \T1/ptm/m/n/10.95 The files nec-es-sary for the phy-lo-ge-netic re-con-struc-ti Package texdepends Warning: No 'fig/association_paml.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1217. Package texdepends Warning: Figure 'fig/association_paml.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1217. Underfull \hbox (badness 10000) in paragraph at lines 1247--1249 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Package texdepends Warning: No 'fig/localisation_paml.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1252. Package texdepends Warning: Figure 'fig/localisation_paml.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1252. Chapter 7. Package texdepends Warning: Figure(s) missing. Check dependencies again. 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(rerunfilecheck) Rerun to get outlines right /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[3]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' ======> building fig/option_b.subfig.mk <====== make[3]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[3]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' ******************************************** *********** New build needed *************** ******************************************** New manual.aux file LU_rebuild_latex: new run needed (LaTeX message 'Rerun to get...') 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Rerun needed /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[5]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' make[5]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' ======> building manual.pdf <====== removed 'manual.pdf_NEED_REBUILD' removed 'manual.pdf.mk' Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 36. Package texdepends Warning: Diverting empty macro 'Ginclude@eps' (texdepends) Probably a bug in texdepends.sty. Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87. Chapter 1. Package natbib Warning: Citation `Bardel05' on page 3 undefined on input line 143. Package natbib Warning: Citation `Ge03' on page 3 undefined on input line 146. Package natbib Warning: Citation `Becker04' on page 3 undefined on input line 146. LaTeX Warning: `h' float specifier changed to `ht'. Package natbib Warning: Citation `Bardel05' on page 4 undefined on input line 180. Package natbib Warning: Citation `Stephens01' on page 4 undefined on input line 197. Package natbib Warning: Citation `Stephens03' on page 4 undefined on input line 197. Package natbib Warning: Citation `Becker04' on page 4 undefined on input line 198. Package natbib Warning: Citation `Swofford02' on page 4 undefined on input line 199. Package natbib Warning: Citation `Felsenstein04' on page 4 undefined on input line 200. Package natbib Warning: Citation `YangPAML' on page 4 undefined on input line 200. Underfull \hbox (badness 1454) in paragraph at lines 196--201 []\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10. Chapter 2. Package natbib Warning: Citation `Swofford02' on page 7 undefined on input line 278. Package natbib Warning: Citation `Felsenstein04' on page 7 undefined on input line 281. Underfull \hbox (badness 1142) in paragraph at lines 281--284 []\T1/pcr/m/n/10.95 phylip \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail- Package natbib Warning: Citation `YangPAML' on page 7 undefined on input line 284. Package natbib Warning: Citation `Guindon03' on page 7 undefined on input line 288. Underfull \hbox (badness 2486) in paragraph at lines 284--290 []\T1/pcr/m/n/10.95 paml \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail-ab Underfull \hbox (badness 10000) in paragraph at lines 314--315 Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 369--369 []|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370 [] Underfull \hbox (badness 10000) in paragraph at lines 396--397 Underfull \hbox (badness 10000) in paragraph at lines 400--401 Underfull \hbox (badness 10000) in paragraph at lines 416--417 Underfull \hbox (badness 1112) in paragraph at lines 505--507 []\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes Chapter 4. Overfull \hbox (2.0805pt too wide) in paragraph at lines 537--553 [] Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605 \T1/ptm/m/n/10.95 Examples: $[]$ $[]$ Package natbib Warning: Citation `Bardel05' on page 14 undefined on input line 634. Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --data-qual|-q Underfull \hbox (badness 1281) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 remove the out-group se-quence for the Underfull \hbox (badness 5681) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 ancestral se-quence (only use-ful with Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --tree-building-program|-p Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --s-site-characters Underfull \hbox (badness 1565) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 print the tree with the char-ac-ter state Overfull \hbox (2.0805pt too wide) in paragraph at lines 664--698 [] Underfull \hbox (badness 10000) in paragraph at lines 735--738 Underfull \hbox (badness 1622) in paragraph at lines 747--755 \T1/ptm/m/n/10.95 Example of such files are given in the test di-rec-tory. Thes Package natbib Warning: Citation `Ge03' on page 19 undefined on input line 830. Package natbib Warning: Citation `Becker04' on page 19 undefined on input line 830. Package texdepends Warning: No 'fig/option_b_1.pdftex' file (texdepends) using 1 for graphic dimensions on input line 852. Package texdepends Warning: Figure 'fig/option_b_1.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 852. Package texdepends Warning: No 'fig/option_b_2.pdftex' file (texdepends) using 1 for graphic dimensions on input line 853. Package texdepends Warning: Figure 'fig/option_b_2.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 853. Overfull \hbox (15.23479pt too wide) in paragraph at lines 850--865 [][] Package natbib Warning: Citation `Bardel05' on page 21 undefined on input line 921. Package natbib Warning: Citation `Bardel05' on page 21 undefined on input line 941. Chapter 6. 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(natbib) Rerun to get citations correct. /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[5]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' make[5]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[5]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' ******************************************** *********** New build needed *************** ******************************************** New manual.aux file LU_rebuild_latex: new run needed (LaTeX message 'Rerun to get...') 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Rerun needed /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[7]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' make[7]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' ======> building manual.pdf <====== removed 'manual.pdf_NEED_REBUILD' removed 'manual.pdf.mk' Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 36. Package texdepends Warning: Diverting empty macro 'Ginclude@eps' (texdepends) Probably a bug in texdepends.sty. Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87. Chapter 1. LaTeX Warning: `h' float specifier changed to `ht'. Underfull \hbox (badness 1454) in paragraph at lines 196--201 []\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10. Chapter 2. Underfull \hbox (badness 10000) in paragraph at lines 314--315 Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 369--369 []|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370 [] Underfull \hbox (badness 10000) in paragraph at lines 396--397 Underfull \hbox (badness 10000) in paragraph at lines 400--401 Underfull \hbox (badness 10000) in paragraph at lines 416--417 Underfull \hbox (badness 1112) in paragraph at lines 505--507 []\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes Chapter 4. Overfull \hbox (2.0805pt too wide) in paragraph at lines 537--553 [] Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605 \T1/ptm/m/n/10.95 Examples: $[]$ $[]$ Chapter 5. 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Thes Overfull \hbox (15.23479pt too wide) in paragraph at lines 850--865 [][] Chapter 6. Underfull \hbox (badness 5519) in paragraph at lines 968--971 []\T1/ptm/b/n/10.95 create_file \T1/ptm/m/n/10.95 which con-tains files and in- Underfull \hbox (badness 10000) in paragraph at lines 1024--1026 []\T1/ptm/m/n/10.95 the two \T1/pcr/m/n/10.95 FamHap \T1/ptm/m/n/10.95 out-put Underfull \hbox (badness 10000) in paragraph at lines 1125--1127 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Underfull \hbox (badness 2662) in paragraph at lines 1188--1195 \T1/ptm/m/n/10.95 The files nec-es-sary for the phy-lo-ge-netic re-con-struc-ti Underfull \hbox (badness 10000) in paragraph at lines 1247--1249 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Chapter 7. Underfull \hbox (badness 10000) in paragraph at lines 58--61 []\T1/ptm/m/n/10.95 Z Yang. Phy-lo-ge-netic anal-y-sis by max-i-mum like-li-ho /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[7]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' make[7]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[7]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' ******************************************** *********** New build needed *************** ******************************************** New manual.aux file LU_rebuild_latex: new run needed (LaTeX message 'Rerun to get...') ******************************************** /usr/bin/make LU_REC_LEVEL=4 manual.pdf make[8]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' ======> building manual.bbl <====== This is BibTeX, Version 0.99d (TeX Live 2025/Debian) The top-level auxiliary file: manual.aux The style file: plainnat.bst Database file #1: stage.bib Warning--empty year in YangPAML (There was 1 warning) Previous compilation failed. Rerun needed /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[9]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' make[9]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' ======> building manual.pdf <====== removed 'manual.pdf_NEED_REBUILD' removed 'manual.pdf.mk' Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 36. Package texdepends Warning: Diverting empty macro 'Ginclude@eps' (texdepends) Probably a bug in texdepends.sty. Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87. Chapter 1. LaTeX Warning: `h' float specifier changed to `ht'. Underfull \hbox (badness 1454) in paragraph at lines 196--201 []\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10. Chapter 2. Underfull \hbox (badness 10000) in paragraph at lines 314--315 Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 369--369 []|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370 [] Underfull \hbox (badness 10000) in paragraph at lines 396--397 Underfull \hbox (badness 10000) in paragraph at lines 400--401 Underfull \hbox (badness 10000) in paragraph at lines 416--417 Underfull \hbox (badness 1112) in paragraph at lines 505--507 []\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes Chapter 4. Overfull \hbox (2.0805pt too wide) in paragraph at lines 537--553 [] Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605 \T1/ptm/m/n/10.95 Examples: $[]$ $[]$ Chapter 5. 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Thes Overfull \hbox (15.23479pt too wide) in paragraph at lines 850--865 [][] Chapter 6. Underfull \hbox (badness 5519) in paragraph at lines 968--971 []\T1/ptm/b/n/10.95 create_file \T1/ptm/m/n/10.95 which con-tains files and in- Underfull \hbox (badness 10000) in paragraph at lines 1024--1026 []\T1/ptm/m/n/10.95 the two \T1/pcr/m/n/10.95 FamHap \T1/ptm/m/n/10.95 out-put Underfull \hbox (badness 10000) in paragraph at lines 1125--1127 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Underfull \hbox (badness 2662) in paragraph at lines 1188--1195 \T1/ptm/m/n/10.95 The files nec-es-sary for the phy-lo-ge-netic re-con-struc-ti Underfull \hbox (badness 10000) in paragraph at lines 1247--1249 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Chapter 7. Underfull \hbox (badness 10000) in paragraph at lines 58--61 /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[9]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' make[9]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[9]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' /usr/bin/make LU_REC_LEVEL=5 manual.pdf make[10]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' make[10]: 'manual.pdf' is up to date. make[10]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' make[9]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' make[8]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' make[7]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' make[6]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' make[5]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' make[4]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' make[3]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' make[2]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' make[1]: Leaving directory '/build/reproducible-path/altree-1.3.2' dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/altree-1.3.2' make[2]: Entering directory '/build/reproducible-path/altree-1.3.2/CUtils' make -C c_sources make[3]: Entering directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" chisq.c Running Mkbootstrap for CUtils () cp ALTree/SitePerTree.pm blib/lib/ALTree/SitePerTree.pm cp ALTree/SiteSens.pm blib/lib/ALTree/SiteSens.pm cp ALTree/Import.pm blib/lib/ALTree/Import.pm cp ALTree/Foret.pm blib/lib/ALTree/Foret.pm cp ALTree/Tree.pm blib/lib/ALTree/Tree.pm cp ALTree/Base.pm blib/lib/ALTree/Base.pm cp ALTree/Site.pm blib/lib/ALTree/Site.pm cp ALTree/SiteSensPerForet.pm blib/lib/ALTree/SiteSensPerForet.pm cp ALTree/SiteSensPerTree.pm blib/lib/ALTree/SiteSensPerTree.pm cp ALTree/Chi2.pm blib/lib/ALTree/Chi2.pm cp ALTree/Nanova.pm blib/lib/ALTree/Nanova.pm cp ALTree/Node.pm blib/lib/ALTree/Node.pm cp ALTree/SiteCollection.pm blib/lib/ALTree/SiteCollection.pm cp ALTree/Input.pm blib/lib/ALTree/Input.pm cp ALTree/to_rewrite.pm blib/lib/ALTree/to_rewrite.pm cp ALTree/Sens.pm blib/lib/ALTree/Sens.pm cp ALTree/Utils.pm blib/lib/ALTree/Utils.pm cp ALTree/SitePerForet.pm blib/lib/ALTree/SitePerForet.pm aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" double_permutation.c aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" fisher.c aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" mt19937ar.c aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" myrand.c aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" resampling.c "/usr/bin/perl" "/usr/share/perl/5.40.1/ExtUtils/xsubpp" -typemap '/usr/share/perl/5.40/ExtUtils/typemap' CUtils.xs > CUtils.xsc aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" rhyper.c aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" stats.c chmod 644 "CUtils.bs" aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" z.c "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644 cp lib/ALTree/CUtils.pm ../blib/lib/ALTree/CUtils.pm AutoSplitting ../blib/lib/ALTree/CUtils.pm (../blib/lib/auto/ALTree/CUtils) chisq.c: In function 'pochisq': chisq.c:77:1: warning: old-style function definition [-Wold-style-definition] 77 | pochisq (x, df) | ^~~~~~~ chisq.c: In function 'critchi': chisq.c:129:1: warning: old-style function definition [-Wold-style-definition] 129 | critchi (p, df) | ^~~~~~~ z.c: In function 'poz': z.c:44:1: warning: old-style function definition [-Wold-style-definition] 44 | poz (z) | ^~~ z.c: In function 'critz': z.c:91:1: warning: old-style function definition [-Wold-style-definition] 91 | critz (p) | ^~~~~ z.c: At top level: z.c:12:13: warning: 'sccsfid' defined but not used [-Wunused-variable] 12 | static char sccsfid[] = "@(#) z.c 5.1 (|stat) 12/26/85"; | ^~~~~~~ Please specify prototyping behavior for CUtils.xs (see perlxs manual) mv CUtils.xsc CUtils.c aarch64-linux-gnu-gcc -c -ggdb3 -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"1.1\" -DXS_VERSION=\"1.1\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" CUtils.c In function 'pval_min', inlined from 'double_permutation' at double_permutation.c:182:19: double_permutation.c:125:20: warning: '*(datatype_t *)local' may be used uninitialized [-Wmaybe-uninitialized] 125 | datatype_t ret=rep[0]; | ^~~ ar cr libaltree-cutils.a chisq.o double_permutation.o fisher.o mt19937ar.o myrand.o resampling.o rhyper.o stats.o z.o : libaltree-cutils.a make[3]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' make[3]: Entering directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' rm -f ../blib/arch/auto/ALTree/CUtils/CUtils.so aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -shared -L/usr/local/lib -fstack-protector-strong CUtils.o -o ../blib/arch/auto/ALTree/CUtils/CUtils.so c_sources/libaltree-cutils.a \ -lm -lpthread -lgsl -lblas \ /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. chmod 755 ../blib/arch/auto/ALTree/CUtils/CUtils.so Manifying 1 pod document make[2]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils' cp progs/altree-add-S blib/script/altree-add-S cp progs/altree-convert blib/script/altree-convert cp progs/altree blib/script/altree "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-add-S "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-convert Manifying 3 pod documents make[1]: Leaving directory '/build/reproducible-path/altree-1.3.2' dh_auto_test make -j12 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/altree-1.3.2' make[2]: Entering directory '/build/reproducible-path/altree-1.3.2/CUtils' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644 make[3]: Entering directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' Manifying 1 pod document make[2]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils' make[2]: Entering directory '/build/reproducible-path/altree-1.3.2/CUtils' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644 make[3]: Entering directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' make[3]: Entering directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' No tests defined for ALTree::CUtils extension. make[3]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, '../blib/lib', '../blib/arch')" t/*.t t/ALTree-CUtils.t ....... 1..1 ok 1 - use ALTree::CUtils; ok t/double_permutation.t .. 1..3 ok 1 - use ALTree::CUtils; ok 2 - undef when bad args ok 3 - double_permutation ok All tests successful. Files=2, Tests=4, 0 wallclock secs ( 0.03 usr 0.00 sys + 0.12 cusr 0.01 csys = 0.16 CPU) Result: PASS make[2]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/ALTree.t .. 1..1 ok 1 - use ALTree::Import; ok All tests successful. Files=1, Tests=1, 1 wallclock secs ( 0.02 usr 0.00 sys + 0.08 cusr 0.02 csys = 0.12 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/altree-1.3.2' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j12 install DESTDIR=/build/reproducible-path/altree-1.3.2/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/altree-1.3.2' make[2]: Entering directory '/build/reproducible-path/altree-1.3.2/CUtils' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644 make[3]: Entering directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' Manifying 1 pod document make[2]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils' Manifying 3 pod documents Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/auto/ALTree/CUtils/CUtils.so Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/CUtils.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/SitePerForet.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Utils.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Sens.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/to_rewrite.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Input.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/SiteCollection.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Node.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Nanova.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Chi2.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/SiteSensPerTree.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/SiteSensPerForet.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Site.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Base.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Tree.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Foret.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Import.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/SiteSens.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/SitePerTree.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/auto/ALTree/CUtils/autosplit.ix Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/share/man/man1/altree-convert.1p Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/share/man/man1/altree-add-S.1p Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/share/man/man1/altree.1p Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/share/man/man3/ALTree::CUtils.3pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/bin/altree-add-S Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/bin/altree Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/bin/altree-convert make[1]: Leaving directory '/build/reproducible-path/altree-1.3.2' dh_install debian/rules execute_after_dh_install-arch make[1]: Entering directory '/build/reproducible-path/altree-1.3.2' set -e \ ; cd debian/altree/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/ \ ; for file in Chi2.pm Import.pm Input.pm Node.pm SitePerForet.pm SiteSensPerTree.pm Tree.pm to_rewrite.pm \ ; do iconv -f ISO-8859-1 -t UTF-8 < "${file}" > "${file}.conv" \ ; mv -vf "${file}.conv" "${file}" \ ; done renamed 'Chi2.pm.conv' -> 'Chi2.pm' renamed 'Import.pm.conv' -> 'Import.pm' renamed 'Input.pm.conv' -> 'Input.pm' renamed 'Node.pm.conv' -> 'Node.pm' renamed 'SitePerForet.pm.conv' -> 'SitePerForet.pm' renamed 'SiteSensPerTree.pm.conv' -> 'SiteSensPerTree.pm' renamed 'Tree.pm.conv' -> 'Tree.pm' renamed 'to_rewrite.pm.conv' -> 'to_rewrite.pm' make[1]: Leaving directory '/build/reproducible-path/altree-1.3.2' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/altree-1.3.2' dh_compress --exclude=.pdf make[1]: Leaving directory '/build/reproducible-path/altree-1.3.2' dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/altree/usr/lib/aarch64-linux-gnu/perl5/5.40/auto/ALTree/CUtils/CUtils.so was not linked against libblas.so.3 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'altree-dbgsym' in '../altree-dbgsym_1.3.2-4_arm64.deb'. dpkg-deb: building package 'altree' in '../altree_1.3.2-4_arm64.deb'. dpkg-deb: building package 'altree-examples' in '../altree-examples_1.3.2-4_all.deb'. dpkg-genbuildinfo --build=binary -O../altree_1.3.2-4_arm64.buildinfo dpkg-genchanges --build=binary -O../altree_1.3.2-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/479061 and its subdirectories I: Current time: Wed Sep 17 23:36:43 -12 2025 I: pbuilder-time-stamp: 1758195403 Thu Sep 18 11:36:47 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Thu Sep 18 11:36:47 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Thu Sep 18 11:36:47 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Thu Sep 18 11:36:47 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-CiwfDo' ==================================================================================== Wed Oct 21 17:59:48 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "2 altree unstable /srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G 1.3.2-4" as arguments. Wed Oct 21 17:59:48 UTC 2026 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-J30ihyU4" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Oct 21 17:59:48 UTC 2026 I: Downloading source for unstable/altree=1.3.2-4 Reading package lists... NOTICE: 'altree' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/altree.git Please use: git clone https://salsa.debian.org/med-team/altree.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 622 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main altree 1.3.2-4 (dsc) [2535 B] Get:2 http://deb.debian.org/debian unstable/main altree 1.3.2-4 (tar) [611 kB] Get:3 http://deb.debian.org/debian unstable/main altree 1.3.2-4 (diff) [8600 B] Fetched 622 kB in 0s (23.5 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'altree' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/altree.git Please use: git clone https://salsa.debian.org/med-team/altree.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 622 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main altree 1.3.2-4 (dsc) [2535 B] Get:2 http://deb.debian.org/debian unstable/main altree 1.3.2-4 (tar) [611 kB] Get:3 http://deb.debian.org/debian unstable/main altree 1.3.2-4 (diff) [8600 B] Fetched 622 kB in 0s (23.5 MB/s) Download complete and in download only mode ============================================================================= Re-Building altree in unstable on arm64 on codethink03-arm64 now. Date: Wed Oct 21 18:59:48 BST 2026 Date UTC: Wed Oct 21 17:59:48 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G/pbuilderrc_Tx27 + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' altree = debian-installer -o altree = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' altree = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G/pbuilderrc_Tx27 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G/b2 --logfile b2/build.log altree_1.3.2-4.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Oct 22 07:59:48 +14 2026 I: pbuilder-time-stamp: 1792605588 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [altree_1.3.2-4.dsc] I: copying [./altree_1.3.2.orig.tar.gz] I: copying [./altree_1.3.2-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./altree_1.3.2-4.dsc: no acceptable signature found dpkg-source: info: extracting altree in altree-1.3.2 dpkg-source: info: unpacking altree_1.3.2.orig.tar.gz dpkg-source: info: unpacking altree_1.3.2-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc-15.patch dpkg-source: info: applying typo.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/290394/tmp/hooks/D01_modify_environment starting debug: Running on codethink03-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 21 18:00 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/290394/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/290394/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=72f6fc464fb547deac4bed775613c9a3 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=290394 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G/pbuilderrc_Tx27 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G/b2 --logfile b2/build.log altree_1.3.2-4.dsc' SUDO_GID=109 SUDO_HOME=/var/lib/jenkins SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/290394/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: bash-completion, debhelper-compat (= 13), perl:native, perl-xs-dev, latex-make, ghostscript, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, libmath-tamuanova-perl, libgsl-dev, libblas-dev | libblas.so, libtest-deep-perl, fig2dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on bash-completion; however: Package bash-completion is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on perl:native. pbuilder-satisfydepends-dummy depends on perl-xs-dev; however: Package perl-xs-dev is not installed. pbuilder-satisfydepends-dummy depends on latex-make; however: Package latex-make is not installed. pbuilder-satisfydepends-dummy depends on ghostscript; however: Package ghostscript is not installed. pbuilder-satisfydepends-dummy depends on texlive-lang-french; however: Package texlive-lang-french is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. pbuilder-satisfydepends-dummy depends on libmath-tamuanova-perl; however: Package libmath-tamuanova-perl is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libblas-dev | libblas.so; however: Package libblas-dev is not installed. Package libblas.so is not installed. pbuilder-satisfydepends-dummy depends on libtest-deep-perl; however: Package libtest-deep-perl is not installed. pbuilder-satisfydepends-dummy depends on fig2dev; however: Package fig2dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bash-completion{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} fig2dev{a} file{a} fontconfig-config{a} fonts-lmodern{a} fonts-urw-base35{a} gawk{a} gettext{a} gettext-base{a} ghostscript{a} groff-base{a} intltool-debian{a} latex-make{a} libapache-pom-java{a} libarchive-zip-perl{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libblas-dev{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2t64{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontbox-java{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libgs-common{a} libgs10{a} libgs10-common{a} libgsl-dev{a} libgsl28{a} libgslcblas0{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libice6{a} libicu76{a} libidn12{a} libidn2-0{a} libijs-0.35{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkpathsea6{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libmath-tamuanova-perl{a} libmpfi0{a} libnetpbm11t64{a} libopenjp2-7{a} libp11-kit0{a} libpaper-utils{a} libpaper2{a} libpdfbox-java{a} libperl-dev{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpotrace0{a} libproc2-0{a} libptexenc1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libsharpyuv0{a} libsm6{a} libsynctex2{a} libtamuanova-0.2{a} libtasn1-6{a} libteckit0{a} libtest-deep-perl{a} libtexlua53-5{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libtiff6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2-16{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libzzip-0-13t64{a} m4{a} man-db{a} media-types{a} netbase{a} netpbm{a} po-debconf{a} poppler-data{a} preview-latex-style{a} procps{a} python3{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-lang-french{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} tzdata{a} ucf{a} x11-common{a} xdg-utils{a} xfonts-encodings{a} xfonts-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl dbus default-jre dvisvgm fonts-droid-fallback inkscape krb5-locales libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libltdl-dev libmail-sendmail-perl libnet-dbus-perl libspreadsheet-parseexcel-perl libx11-protocol-perl linux-sysctl-defaults lmodern lynx psmisc ruby shared-mime-info tex-gyre texlive-plain-generic tipa tk wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 155 newly installed, 0 to remove and 0 not upgraded. Need to get 319 MB of archives. After unpacking 838 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 gawk arm64 1:5.3.2-1 [731 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.7.2-1 [95.7 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 poppler-data all 0.4.12-1 [1601 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.7-1 [857 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.7-1 [2001 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 media-types all 13.0.0 [29.3 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025b-5 [260 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.7-1 [1895 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.7-1 [761 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-9 [62.8 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-9 [871 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 bash-completion all 1:2.16.0-7 [319 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41.1-3 [98.1 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libtext-charwidth-perl arm64 0.04-11+b4 [9652 B] Get: 31 http://deb.debian.org/debian unstable/main arm64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 32 http://deb.debian.org/debian unstable/main arm64 ucf all 3.0052 [43.3 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.26 [91.8 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-5 [540 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 44 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.16-2 [100 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.26 [939 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.50-1 [275 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libfontenc1 arm64 1:1.1.8-1+b2 [22.5 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+25 [217 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 xfonts-utils arm64 1:7.7+7 [89.3 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libgs-common all 10.05.1~dfsg-3 [149 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libgs10-common all 10.05.1~dfsg-3 [479 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libavahi-common-data arm64 0.8-17 [113 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libavahi-common3 arm64 0.8-17 [44.9 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libdbus-1-3 arm64 1.16.2-2 [169 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libavahi-client3 arm64 0.8-17 [48.5 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.10-2 [1395 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 74 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 libcups2t64 arm64 2.4.10-4 [243 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-2.4 [318 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-2.4 [387 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libidn12 arm64 1.43-2 [47.0 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libijs-0.35 arm64 0.35-16 [15.3 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 libjbig2dec0 arm64 0.20-1+b3 [60.1 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-4 [173 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libopenjp2-7 arm64 2.5.3-2.1 [189 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libpaper2 arm64 2.2.5-0.3+b2 [16.6 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.7.0-5 [331 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.12-1 [343 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.12-1 [795 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libsm6 arm64 2:1.2.6-1 [36.4 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libxt6t64 arm64 1:1.2.1-1.3 [182 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libgs10 arm64 10.05.1~dfsg-3 [2356 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 ghostscript arm64 10.05.1~dfsg-3 [50.4 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libnetpbm11t64 arm64 2:11.11.01-1 [178 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 netpbm arm64 2:11.11.01-1 [2043 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 fig2dev arm64 1:3.2.9a-4 [417 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 fonts-lmodern all 2.005-1 [4540 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 tex-common all 6.19 [29.4 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 latex-make all 2.4.3-1 [1030 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libapache-pom-java all 33-2 [5852 B] Get: 109 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.1-7 [135 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libblas-dev arm64 3.12.1-7 [145 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.12-1 [27.0 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 libcairo2 arm64 1.18.4-1+b1 [483 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 libcommons-parent-java all 56-1 [10.8 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 libcommons-logging-java all 1.3.0-2 [68.6 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 libfontbox-java all 1:1.8.16-5 [211 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.84.4-3 [1428 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-7 [70.5 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 libgslcblas0 arm64 2.8+dfsg-5.1 [91.8 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 libgsl28 arm64 2.8+dfsg-5.1 [921 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 libgsl-dev arm64 2.8+dfsg-5.1 [1177 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 11.4.5-1 [465 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 libicu76 arm64 76.1-4 [9524 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 libkpathsea6 arm64 2025.20250727.75242+ds-4 [149 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 libtamuanova-0.2 arm64 0.2-5+b3 [8580 B] Get: 129 http://deb.debian.org/debian unstable/main arm64 libmath-tamuanova-perl arm64 1.0.2-4+b2 [13.1 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 libmpfi0 arm64 1.5.4+ds-4 [34.5 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 libpaper-utils arm64 2.2.5-0.3+b2 [16.4 kB] Get: 132 http://deb.debian.org/debian unstable/main arm64 libpdfbox-java all 1:1.8.16-5 [5527 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 libperl-dev arm64 5.40.1-6 [1019 kB] Get: 134 http://deb.debian.org/debian unstable/main arm64 libpotrace0 arm64 1.16-2+b2 [23.4 kB] Get: 135 http://deb.debian.org/debian unstable/main arm64 libptexenc1 arm64 2025.20250727.75242+ds-4 [49.5 kB] Get: 136 http://deb.debian.org/debian unstable/main arm64 libsynctex2 arm64 2025.20250727.75242+ds-4 [54.5 kB] Get: 137 http://deb.debian.org/debian unstable/main arm64 libteckit0 arm64 2.5.12+ds1-1+b1 [303 kB] Get: 138 http://deb.debian.org/debian unstable/main arm64 libtest-deep-perl all 1.205-1 [52.3 kB] Get: 139 http://deb.debian.org/debian unstable/main arm64 libtexlua53-5 arm64 2025.20250727.75242+ds-4 [90.8 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 libxmu6 arm64 2:1.1.3-3+b4 [55.7 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 libxpm4 arm64 1:3.5.17-1+b3 [53.4 kB] Get: 142 http://deb.debian.org/debian unstable/main arm64 libxaw7 arm64 2:1.0.16-1 [195 kB] Get: 143 http://deb.debian.org/debian unstable/main arm64 libxi6 arm64 2:1.8.2-1 [77.8 kB] Get: 144 http://deb.debian.org/debian unstable/main arm64 libzzip-0-13t64 arm64 0.13.78+dfsg.1-0.1 [59.4 kB] Get: 145 http://deb.debian.org/debian unstable/main arm64 preview-latex-style all 13.2-1.1 [350 kB] Get: 146 http://deb.debian.org/debian unstable/main arm64 t1utils arm64 1.41-4+b1 [57.6 kB] Get: 147 http://deb.debian.org/debian unstable/main arm64 texlive-binaries arm64 2025.20250727.75242+ds-4 [6818 kB] Get: 148 http://deb.debian.org/debian unstable/main arm64 xdg-utils all 1.2.1-2 [75.8 kB] Get: 149 http://deb.debian.org/debian unstable/main arm64 texlive-base all 2025.20250727-3 [23.1 MB] Get: 150 http://deb.debian.org/debian unstable/main arm64 texlive-fonts-recommended all 2025.20250727-3 [4991 kB] Get: 151 http://deb.debian.org/debian unstable/main arm64 texlive-lang-french all 2025.20250727-3 [149 MB] Get: 152 http://deb.debian.org/debian unstable/main arm64 texlive-latex-base all 2025.20250727-3 [1318 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 texlive-latex-recommended all 2025.20250727-3 [8454 kB] Get: 154 http://deb.debian.org/debian unstable/main arm64 texlive-pictures all 2025.20250727-3 [22.1 MB] Get: 155 http://deb.debian.org/debian unstable/main arm64 texlive-latex-extra all 2025.20250727-3 [27.4 MB] Fetched 319 MB in 2s (149 MB/s) Preconfiguring packages ... Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../libreadline8t64_8.3-3_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Setting up readline-common (8.3-3) ... Setting up libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package gawk. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20052 files and directories currently installed.) Preparing to unpack .../gawk_1%3a5.3.2-1_arm64.deb ... Unpacking gawk (1:5.3.2-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.7.2-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.2-1) ... Selecting previously unselected package poppler-data. Preparing to unpack .../poppler-data_0.4.12-1_all.deb ... Unpacking poppler-data (0.4.12-1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.7-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.7-1_arm64.deb ... Unpacking python3.13-minimal (3.13.7-1) ... Setting up libpython3.13-minimal:arm64 (3.13.7-1) ... Setting up libexpat1:arm64 (2.7.2-1) ... Setting up python3.13-minimal (3.13.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21113 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_arm64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22096 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.7-1_arm64.deb ... Unpacking python3 (3.13.7-1) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../001-libproc2-0_2%3a4.0.4-9_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.4-9_arm64.deb ... Unpacking procps (2:4.0.4-9) ... 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Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../009-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.41.1-3_arm64.deb ... Unpacking bsdextrautils (2.41.1-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../012-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package libtext-charwidth-perl:arm64. Preparing to unpack .../014-libtext-charwidth-perl_0.04-11+b4_arm64.deb ... Unpacking libtext-charwidth-perl:arm64 (0.04-11+b4) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../015-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... Selecting previously unselected package ucf. Preparing to unpack .../016-ucf_3.0052_all.deb ... Moving old data out of the way Unpacking ucf (3.0052) ... Selecting previously unselected package m4. Preparing to unpack .../017-m4_1.4.20-1_arm64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../018-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../019-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../020-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. 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Preparing to unpack .../027-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../028-libelf1t64_0.193-3_arm64.deb ... Unpacking libelf1t64:arm64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../029-dwz_0.16-2_arm64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../030-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2-16:arm64. Preparing to unpack .../031-libxml2-16_2.14.5+dfsg-0.2_arm64.deb ... Unpacking libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Selecting previously unselected package gettext. Preparing to unpack .../032-gettext_0.23.1-2+b1_arm64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/290394/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/290394/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/altree-1.3.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../altree_1.3.2-4_source.changes dpkg-buildpackage: info: source package altree dpkg-buildpackage: info: source version 1.3.2-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules execute_before_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/altree-1.3.2' /usr/bin/make -C Documentation distclean || true make[2]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' make[2]: Nothing to be done for 'distclean'. make[2]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' make[1]: Leaving directory '/build/reproducible-path/altree-1.3.2' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro" Checking if your kit is complete... Warning: the following files are missing in your kit: CUtils/c_sources/MYMETA.json CUtils/MYMETA.json MYMETA.json Please inform the author. MakeMaker (v7.70) Warning (non-fatal): Target 'dynamic' depends on targets in skipped section 'dynamic_lib' Warning (non-fatal): Target 'static' depends on targets in skipped section 'static_lib' Generating a Unix-style Makefile Writing Makefile for ALTree::CUtils Writing MYMETA.yml and MYMETA.json Generating a Unix-style Makefile Writing Makefile for ALTree::CUtils Writing MYMETA.yml and MYMETA.json Generating a Unix-style Makefile Writing Makefile for altree Writing MYMETA.yml and MYMETA.json debian/rules execute_before_dh_auto_build make[1]: Entering directory '/build/reproducible-path/altree-1.3.2' /usr/bin/make -C Documentation pdf make[2]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[3]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' make[3]: Nothing to be done for 'LU_WATCH_FILES_SAVE'. make[3]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' ======> building manual.pdf <====== Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 36. Package texdepends Warning: Diverting empty macro 'Ginclude@eps' (texdepends) Probably a bug in texdepends.sty. Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87. Chapter 1. LaTeX Warning: Reference `fig:altree' on page 2 undefined on input line 121. Package texdepends Warning: No 'fig/overview.pdftex' file (texdepends) using 1 for graphic dimensions on input line 124. Package texdepends Warning: Figure 'fig/overview.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 124. 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Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605 \T1/ptm/m/n/10.95 Examples: $[]$ $[]$ LaTeX Warning: Reference `description_etiquette' on page 14 undefined on input line 632. LaTeX Warning: Reference `description_etiquette' on page 14 undefined on input line 633. Package natbib Warning: Citation `Bardel05' on page 14 undefined on input line 634. LaTeX Warning: Reference `description_etiquette' on page 15 undefined on input line 649. LaTeX Warning: Reference `description_etiquette' on page 15 undefined on input line 649. Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --data-qual|-q Underfull \hbox (badness 1281) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 remove the out-group se-quence for the Underfull \hbox (badness 5681) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 ancestral se-quence (only use-ful with Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --tree-building-program|-p Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --s-site-characters Underfull \hbox (badness 1565) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 print the tree with the char-ac-ter state Overfull \hbox (2.0805pt too wide) in paragraph at lines 664--698 [] LaTeX Warning: Reference `help' on page 16 undefined on input line 701. Underfull \hbox (badness 10000) in paragraph at lines 735--738 Underfull \hbox (badness 1622) in paragraph at lines 747--755 \T1/ptm/m/n/10.95 Example of such files are given in the test di-rec-tory. Thes Package natbib Warning: Citation `Ge03' on page 19 undefined on input line 830. Package natbib Warning: Citation `Becker04' on page 19 undefined on input line 830. LaTeX Warning: Reference `fig:option_b' on page 19 undefined on input line 846. LaTeX Warning: File `option_b.fig' not found on input line 852. Package texdepends Warning: No 'fig/option_b_1.pdftex' file (texdepends) using 1 for graphic dimensions on input line 852. Package texdepends Warning: Figure 'fig/option_b_1.fig' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 852. LaTeX Warning: File `option_b.fig' not found on input line 853. Package texdepends Warning: No 'fig/option_b_2.pdftex' file (texdepends) using 1 for graphic dimensions on input line 853. 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Underfull \hbox (badness 2662) in paragraph at lines 1188--1195 \T1/ptm/m/n/10.95 The files nec-es-sary for the phy-lo-ge-netic re-con-struc-ti Package texdepends Warning: No 'fig/association_paml.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1217. Package texdepends Warning: Figure 'fig/association_paml.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1217. Underfull \hbox (badness 10000) in paragraph at lines 1247--1249 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Package texdepends Warning: No 'fig/localisation_paml.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1252. Package texdepends Warning: Figure 'fig/localisation_paml.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1252. Chapter 7. Package texdepends Warning: Figure(s) missing. Check dependencies again. 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(rerunfilecheck) Rerun to get outlines right /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[3]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' ======> building fig/option_b.subfig.mk <====== make[3]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[3]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' ******************************************** *********** New build needed *************** ******************************************** New manual.aux file LU_rebuild_latex: new run needed (LaTeX message 'Rerun to get...') 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Rerun needed /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[5]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' make[5]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' ======> building manual.pdf <====== removed 'manual.pdf_NEED_REBUILD' removed 'manual.pdf.mk' Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 36. Package texdepends Warning: Diverting empty macro 'Ginclude@eps' (texdepends) Probably a bug in texdepends.sty. Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87. Chapter 1. Package natbib Warning: Citation `Bardel05' on page 3 undefined on input line 143. Package natbib Warning: Citation `Ge03' on page 3 undefined on input line 146. Package natbib Warning: Citation `Becker04' on page 3 undefined on input line 146. LaTeX Warning: `h' float specifier changed to `ht'. Package natbib Warning: Citation `Bardel05' on page 4 undefined on input line 180. Package natbib Warning: Citation `Stephens01' on page 4 undefined on input line 197. Package natbib Warning: Citation `Stephens03' on page 4 undefined on input line 197. Package natbib Warning: Citation `Becker04' on page 4 undefined on input line 198. Package natbib Warning: Citation `Swofford02' on page 4 undefined on input line 199. Package natbib Warning: Citation `Felsenstein04' on page 4 undefined on input line 200. Package natbib Warning: Citation `YangPAML' on page 4 undefined on input line 200. Underfull \hbox (badness 1454) in paragraph at lines 196--201 []\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10. Chapter 2. Package natbib Warning: Citation `Swofford02' on page 7 undefined on input line 278. Package natbib Warning: Citation `Felsenstein04' on page 7 undefined on input line 281. Underfull \hbox (badness 1142) in paragraph at lines 281--284 []\T1/pcr/m/n/10.95 phylip \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail- Package natbib Warning: Citation `YangPAML' on page 7 undefined on input line 284. Package natbib Warning: Citation `Guindon03' on page 7 undefined on input line 288. Underfull \hbox (badness 2486) in paragraph at lines 284--290 []\T1/pcr/m/n/10.95 paml \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail-ab Underfull \hbox (badness 10000) in paragraph at lines 314--315 Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 369--369 []|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370 [] Underfull \hbox (badness 10000) in paragraph at lines 396--397 Underfull \hbox (badness 10000) in paragraph at lines 400--401 Underfull \hbox (badness 10000) in paragraph at lines 416--417 Underfull \hbox (badness 1112) in paragraph at lines 505--507 []\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes Chapter 4. Overfull \hbox (2.0805pt too wide) in paragraph at lines 537--553 [] Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605 \T1/ptm/m/n/10.95 Examples: $[]$ $[]$ Package natbib Warning: Citation `Bardel05' on page 14 undefined on input line 634. Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --data-qual|-q Underfull \hbox (badness 1281) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 remove the out-group se-quence for the Underfull \hbox (badness 5681) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 ancestral se-quence (only use-ful with Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --tree-building-program|-p Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --s-site-characters Underfull \hbox (badness 1565) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 print the tree with the char-ac-ter state Overfull \hbox (2.0805pt too wide) in paragraph at lines 664--698 [] Underfull \hbox (badness 10000) in paragraph at lines 735--738 Underfull \hbox (badness 1622) in paragraph at lines 747--755 \T1/ptm/m/n/10.95 Example of such files are given in the test di-rec-tory. Thes Package natbib Warning: Citation `Ge03' on page 19 undefined on input line 830. Package natbib Warning: Citation `Becker04' on page 19 undefined on input line 830. Package texdepends Warning: No 'fig/option_b_1.pdftex' file (texdepends) using 1 for graphic dimensions on input line 852. Package texdepends Warning: Figure 'fig/option_b_1.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 852. Package texdepends Warning: No 'fig/option_b_2.pdftex' file (texdepends) using 1 for graphic dimensions on input line 853. Package texdepends Warning: Figure 'fig/option_b_2.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 853. Overfull \hbox (15.23479pt too wide) in paragraph at lines 850--865 [][] Package natbib Warning: Citation `Bardel05' on page 21 undefined on input line 921. Package natbib Warning: Citation `Bardel05' on page 21 undefined on input line 941. Chapter 6. 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(natbib) Rerun to get citations correct. /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[5]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' make[5]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[5]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' ******************************************** *********** New build needed *************** ******************************************** New manual.aux file LU_rebuild_latex: new run needed (LaTeX message 'Rerun to get...') 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Rerun needed /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[7]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' make[7]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' ======> building manual.pdf <====== removed 'manual.pdf_NEED_REBUILD' removed 'manual.pdf.mk' Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 36. Package texdepends Warning: Diverting empty macro 'Ginclude@eps' (texdepends) Probably a bug in texdepends.sty. Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87. Chapter 1. LaTeX Warning: `h' float specifier changed to `ht'. Underfull \hbox (badness 1454) in paragraph at lines 196--201 []\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10. Chapter 2. Underfull \hbox (badness 10000) in paragraph at lines 314--315 Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 369--369 []|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370 [] Underfull \hbox (badness 10000) in paragraph at lines 396--397 Underfull \hbox (badness 10000) in paragraph at lines 400--401 Underfull \hbox (badness 10000) in paragraph at lines 416--417 Underfull \hbox (badness 1112) in paragraph at lines 505--507 []\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes Chapter 4. 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Phy-lo-ge-netic anal-y-sis by max-i-mum like-li-ho /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[7]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' make[7]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[7]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' ******************************************** *********** New build needed *************** ******************************************** New manual.aux file LU_rebuild_latex: new run needed (LaTeX message 'Rerun to get...') ******************************************** /usr/bin/make LU_REC_LEVEL=4 manual.pdf make[8]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' ======> building manual.bbl <====== This is BibTeX, Version 0.99d (TeX Live 2025/Debian) The top-level auxiliary file: manual.aux The style file: plainnat.bst Database file #1: stage.bib Warning--empty year in YangPAML (There was 1 warning) Previous compilation failed. Rerun needed /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[9]: Entering directory '/build/reproducible-path/altree-1.3.2/Documentation' make[9]: Leaving directory '/build/reproducible-path/altree-1.3.2/Documentation' ======> building manual.pdf <====== removed 'manual.pdf_NEED_REBUILD' removed 'manual.pdf.mk' Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 36. Package texdepends Warning: Diverting empty macro 'Ginclude@eps' (texdepends) Probably a bug in texdepends.sty. Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87. Chapter 1. LaTeX Warning: `h' float specifier changed to `ht'. Underfull \hbox (badness 1454) in paragraph at lines 196--201 []\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10. Chapter 2. Underfull \hbox (badness 10000) in paragraph at lines 314--315 Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 369--369 []|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370 [] Underfull \hbox (badness 10000) in paragraph at lines 396--397 Underfull \hbox (badness 10000) in paragraph at lines 400--401 Underfull \hbox (badness 10000) in paragraph at lines 416--417 Underfull \hbox (badness 1112) in paragraph at lines 505--507 []\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes Chapter 4. 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Thes Overfull \hbox (15.23479pt too wide) in paragraph at lines 850--865 [][] Chapter 6. Underfull \hbox (badness 5519) in paragraph at lines 968--971 []\T1/ptm/b/n/10.95 create_file \T1/ptm/m/n/10.95 which con-tains files and in- Underfull \hbox (badness 10000) in paragraph at lines 1024--1026 []\T1/ptm/m/n/10.95 the two \T1/pcr/m/n/10.95 FamHap \T1/ptm/m/n/10.95 out-put Underfull \hbox (badness 10000) in paragraph at lines 1125--1127 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Underfull \hbox (badness 2662) in paragraph at lines 1188--1195 \T1/ptm/m/n/10.95 The files nec-es-sary for the phy-lo-ge-netic re-con-struc-ti Underfull \hbox (badness 10000) in paragraph at lines 1247--1249 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Chapter 7. 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-I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" chisq.c cp ALTree/SiteSensPerForet.pm blib/lib/ALTree/SiteSensPerForet.pm cp ALTree/Input.pm blib/lib/ALTree/Input.pm cp ALTree/Nanova.pm blib/lib/ALTree/Nanova.pm cp ALTree/SitePerTree.pm blib/lib/ALTree/SitePerTree.pm cp ALTree/SiteSens.pm blib/lib/ALTree/SiteSens.pm cp ALTree/to_rewrite.pm blib/lib/ALTree/to_rewrite.pm cp ALTree/SitePerForet.pm blib/lib/ALTree/SitePerForet.pm cp ALTree/Node.pm blib/lib/ALTree/Node.pm cp ALTree/Sens.pm blib/lib/ALTree/Sens.pm cp ALTree/Utils.pm blib/lib/ALTree/Utils.pm cp ALTree/SiteSensPerTree.pm blib/lib/ALTree/SiteSensPerTree.pm cp ALTree/Import.pm blib/lib/ALTree/Import.pm cp ALTree/Foret.pm blib/lib/ALTree/Foret.pm cp ALTree/Tree.pm blib/lib/ALTree/Tree.pm cp ALTree/Base.pm blib/lib/ALTree/Base.pm cp ALTree/Chi2.pm blib/lib/ALTree/Chi2.pm cp ALTree/Site.pm blib/lib/ALTree/Site.pm cp ALTree/SiteCollection.pm blib/lib/ALTree/SiteCollection.pm aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" double_permutation.c aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" fisher.c aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" mt19937ar.c aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" myrand.c aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" resampling.c "/usr/bin/perl" "/usr/share/perl/5.40.1/ExtUtils/xsubpp" -typemap '/usr/share/perl/5.40/ExtUtils/typemap' CUtils.xs > CUtils.xsc Running Mkbootstrap for CUtils () cp lib/ALTree/CUtils.pm ../blib/lib/ALTree/CUtils.pm AutoSplitting ../blib/lib/ALTree/CUtils.pm (../blib/lib/auto/ALTree/CUtils) aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" rhyper.c aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" stats.c aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" z.c chisq.c: In function 'pochisq': chmod 644 "CUtils.bs" chisq.c:77:1: warning: old-style function definition [-Wold-style-definition] 77 | pochisq (x, df) | ^~~~~~~ chisq.c: In function 'critchi': chisq.c:129:1: warning: old-style function definition [-Wold-style-definition] 129 | critchi (p, df) | ^~~~~~~ "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644 Please specify prototyping behavior for CUtils.xs (see perlxs manual) mv CUtils.xsc CUtils.c aarch64-linux-gnu-gcc -c -ggdb3 -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"1.1\" -DXS_VERSION=\"1.1\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" CUtils.c z.c: In function 'poz': z.c:44:1: warning: old-style function definition [-Wold-style-definition] 44 | poz (z) | ^~~ z.c: In function 'critz': z.c:91:1: warning: old-style function definition [-Wold-style-definition] 91 | critz (p) | ^~~~~ z.c: At top level: z.c:12:13: warning: 'sccsfid' defined but not used [-Wunused-variable] 12 | static char sccsfid[] = "@(#) z.c 5.1 (|stat) 12/26/85"; | ^~~~~~~ In function 'pval_min', inlined from 'double_permutation' at double_permutation.c:182:19: double_permutation.c:125:20: warning: '*(datatype_t *)local' may be used uninitialized [-Wmaybe-uninitialized] 125 | datatype_t ret=rep[0]; | ^~~ ar cr libaltree-cutils.a chisq.o double_permutation.o fisher.o mt19937ar.o myrand.o resampling.o rhyper.o stats.o z.o : libaltree-cutils.a make[3]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' make[3]: Entering directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' rm -f ../blib/arch/auto/ALTree/CUtils/CUtils.so aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -shared -L/usr/local/lib -fstack-protector-strong CUtils.o -o ../blib/arch/auto/ALTree/CUtils/CUtils.so c_sources/libaltree-cutils.a \ -lm -lpthread -lgsl -lblas \ /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. chmod 755 ../blib/arch/auto/ALTree/CUtils/CUtils.so Manifying 1 pod document make[2]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils' cp progs/altree blib/script/altree "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree cp progs/altree-add-S blib/script/altree-add-S "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-add-S cp progs/altree-convert blib/script/altree-convert "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-convert Manifying 3 pod documents make[1]: Leaving directory '/build/reproducible-path/altree-1.3.2' dh_auto_test make -j12 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/altree-1.3.2' make[2]: Entering directory '/build/reproducible-path/altree-1.3.2/CUtils' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644 make[3]: Entering directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' Manifying 1 pod document make[2]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils' make[2]: Entering directory '/build/reproducible-path/altree-1.3.2/CUtils' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644 make[3]: Entering directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' make[3]: Entering directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' No tests defined for ALTree::CUtils extension. make[3]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, '../blib/lib', '../blib/arch')" t/*.t t/ALTree-CUtils.t ....... 1..1 ok 1 - use ALTree::CUtils; ok t/double_permutation.t .. 1..3 ok 1 - use ALTree::CUtils; ok 2 - undef when bad args ok 3 - double_permutation ok All tests successful. Files=2, Tests=4, 1 wallclock secs ( 0.02 usr 0.00 sys + 0.11 cusr 0.01 csys = 0.14 CPU) Result: PASS make[2]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/ALTree.t .. 1..1 ok 1 - use ALTree::Import; ok All tests successful. Files=1, Tests=1, 0 wallclock secs ( 0.02 usr 0.00 sys + 0.08 cusr 0.01 csys = 0.11 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/altree-1.3.2' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j12 install DESTDIR=/build/reproducible-path/altree-1.3.2/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/altree-1.3.2' make[2]: Entering directory '/build/reproducible-path/altree-1.3.2/CUtils' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644 make[3]: Entering directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' Manifying 1 pod document make[2]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils' Manifying 3 pod documents Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/auto/ALTree/CUtils/CUtils.so Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/CUtils.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/SiteCollection.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Site.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Chi2.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Base.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Tree.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Foret.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Import.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/SiteSensPerTree.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Utils.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Sens.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Node.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/SitePerForet.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/to_rewrite.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/SiteSens.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/SitePerTree.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Nanova.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Input.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/SiteSensPerForet.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/auto/ALTree/CUtils/autosplit.ix Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/share/man/man1/altree-convert.1p Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/share/man/man1/altree-add-S.1p Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/share/man/man1/altree.1p Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/share/man/man3/ALTree::CUtils.3pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/bin/altree-add-S Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/bin/altree-convert Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/bin/altree make[1]: Leaving directory '/build/reproducible-path/altree-1.3.2' dh_install debian/rules execute_after_dh_install-arch make[1]: Entering directory '/build/reproducible-path/altree-1.3.2' set -e \ ; cd debian/altree/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/ \ ; for file in Chi2.pm Import.pm Input.pm Node.pm SitePerForet.pm SiteSensPerTree.pm Tree.pm to_rewrite.pm \ ; do iconv -f ISO-8859-1 -t UTF-8 < "${file}" > "${file}.conv" \ ; mv -vf "${file}.conv" "${file}" \ ; done renamed 'Chi2.pm.conv' -> 'Chi2.pm' renamed 'Import.pm.conv' -> 'Import.pm' renamed 'Input.pm.conv' -> 'Input.pm' renamed 'Node.pm.conv' -> 'Node.pm' renamed 'SitePerForet.pm.conv' -> 'SitePerForet.pm' renamed 'SiteSensPerTree.pm.conv' -> 'SiteSensPerTree.pm' renamed 'Tree.pm.conv' -> 'Tree.pm' renamed 'to_rewrite.pm.conv' -> 'to_rewrite.pm' make[1]: Leaving directory '/build/reproducible-path/altree-1.3.2' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/altree-1.3.2' dh_compress --exclude=.pdf make[1]: Leaving directory '/build/reproducible-path/altree-1.3.2' dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/altree/usr/lib/aarch64-linux-gnu/perl5/5.40/auto/ALTree/CUtils/CUtils.so was not linked against libblas.so.3 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'altree' in '../altree_1.3.2-4_arm64.deb'. dpkg-deb: building package 'altree-examples' in '../altree-examples_1.3.2-4_all.deb'. dpkg-deb: building package 'altree-dbgsym' in '../altree-dbgsym_1.3.2-4_arm64.deb'. dpkg-genbuildinfo --build=binary -O../altree_1.3.2-4_arm64.buildinfo dpkg-genchanges --build=binary -O../altree_1.3.2-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/290394/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/290394/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/290394 and its subdirectories I: Current time: Thu Oct 22 08:04:45 +14 2026 I: pbuilder-time-stamp: 1792605885 Wed Oct 21 18:04:45 UTC 2026 I: Signing ./b2/altree_1.3.2-4_arm64.buildinfo as altree_1.3.2-4_arm64.buildinfo.asc Wed Oct 21 18:04:45 UTC 2026 I: Signed ./b2/altree_1.3.2-4_arm64.buildinfo as ./b2/altree_1.3.2-4_arm64.buildinfo.asc Wed Oct 21 18:04:45 UTC 2026 - build #2 for altree/unstable/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Wed Oct 21 18:04:45 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-J30ihyU4, removing. + false + set +x /srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G: total 136 -rw-rw-r-- 1 jenkins jenkins 2535 Sep 17 19:14 altree_1.3.2-4.dsc drwxrwxr-x 2 jenkins jenkins 4096 Sep 18 11:36 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 18 11:41 b2 -rw------- 1 jenkins jenkins 121621 Sep 18 11:36 rbuildlog.kUeGPyk /srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G/b1: total 1188 -rw-r--r-- 1 jenkins jenkins 354740 Sep 18 11:36 altree-dbgsym_1.3.2-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 330628 Sep 18 11:36 altree-examples_1.3.2-4_all.deb -rw-r--r-- 1 jenkins jenkins 8600 Sep 18 11:36 altree_1.3.2-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2535 Sep 18 11:36 altree_1.3.2-4.dsc -rw-r--r-- 1 jenkins jenkins 8970 Sep 18 11:36 altree_1.3.2-4_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 9852 Sep 18 11:36 altree_1.3.2-4_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1869 Sep 18 11:36 altree_1.3.2-4_arm64.changes -rw-r--r-- 1 jenkins jenkins 341528 Sep 18 11:36 altree_1.3.2-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 1371 Sep 18 11:36 altree_1.3.2-4_source.changes -rw-r--r-- 1 jenkins jenkins 117683 Sep 18 11:36 build.log /srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G/b2: total 1176 -rw-r--r-- 1 jenkins jenkins 354740 Sep 18 11:41 altree-dbgsym_1.3.2-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 330628 Sep 18 11:41 altree-examples_1.3.2-4_all.deb -rw-r--r-- 1 jenkins jenkins 8600 Sep 18 11:41 altree_1.3.2-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2535 Sep 18 11:41 altree_1.3.2-4.dsc -rw-rw-r-- 1 jenkins jenkins 8970 Sep 18 11:41 altree_1.3.2-4_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 9852 Sep 18 11:41 altree_1.3.2-4_arm64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1869 Sep 18 11:41 altree_1.3.2-4_arm64.changes -rw-r--r-- 1 jenkins jenkins 341528 Sep 18 11:41 altree_1.3.2-4_arm64.deb -rw-rw-r-- 1 jenkins jenkins 1371 Sep 18 11:41 altree_1.3.2-4_source.changes -rw-rw-r-- 1 jenkins jenkins 119618 Sep 18 11:41 build.log Thu Sep 18 11:41:48 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Thu Sep 18 11:41:49 UTC 2025 I: altree_1.3.2-4_arm64.changes: Format: 1.8 Date: Wed, 17 Sep 2025 20:17:16 +0200 Source: altree Binary: altree altree-dbgsym altree-examples Architecture: arm64 all Version: 1.3.2-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: altree - program to perform phylogeny-based association and localization a altree-examples - example files for ALTree Closes: 1115489 Changes: altree (1.3.2-4) unstable; urgency=medium . * Team upload. . [ Santiago Vila ] * d/rules: fix ftbfs on architecture: all builds. The change also prevents mv from prompting. Signed-off-by: Étienne Mollier (Closes: #1115489) Checksums-Sha1: e949fd3442ed872afaa1f2ceacd054657120d2cb 354740 altree-dbgsym_1.3.2-4_arm64.deb fe5eebc2bdf05f965e290b697feb001130815df2 330628 altree-examples_1.3.2-4_all.deb 01e37eda55eeb2b2ce883893ddf7dd76b8ef75c7 8970 altree_1.3.2-4_arm64.buildinfo d878667d1f8f705d23c18a1761b751dac8a23795 341528 altree_1.3.2-4_arm64.deb Checksums-Sha256: 7b1aac451fe57f214e967b19cc49af22cc9cb81eba6a9f6eba667543abb5b43c 354740 altree-dbgsym_1.3.2-4_arm64.deb e0152ce5a3898ab356a8622053713ff7844bc5c2424f9dfa9e8b9f88e5ce0884 330628 altree-examples_1.3.2-4_all.deb 7e5e288a419d4fc3aaea99aa665296e14d76c9f754271b0b8bf735bf48a11b78 8970 altree_1.3.2-4_arm64.buildinfo c08ab289e478d5e2b7eb427252a58cd62f29af7b629edeb0086cb7533115b1e2 341528 altree_1.3.2-4_arm64.deb Files: 18c8fc181ba09b1788b9283530c2c6c6 354740 debug optional altree-dbgsym_1.3.2-4_arm64.deb ada88dd80fde0d048f9fc45b9315d089 330628 science optional altree-examples_1.3.2-4_all.deb fe74c7bbf6ace623d7e7fee77146725e 8970 science optional altree_1.3.2-4_arm64.buildinfo 83a16a036d7274642157150f141a37b7 341528 science optional altree_1.3.2-4_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/altree_1.3.2-3.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/altree_1.3.2-3.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/altree_1.3.2-3.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/altree_1.3.2-3.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/arm64/altree_1.3.2-3_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/altree_1.3.2-3.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-09-18 11:36:46.222143397 +0000 +++ b2/build.log 2025-09-18 11:41:48.058497455 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Sep 17 23:29:07 -12 2025 -I: pbuilder-time-stamp: 1758194947 +I: Current time: Thu Oct 22 07:59:48 +14 2026 +I: pbuilder-time-stamp: 1792605588 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -25,53 +25,85 @@ dpkg-source: info: applying typo.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/479061/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/290394/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 21 18:00 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/290394/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/290394/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='47258fd50b31491899cf6abb9377f0ff' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='479061' - PS1='# ' - PS2='> ' + INVOCATION_ID=72f6fc464fb547deac4bed775613c9a3 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=290394 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G/pbuilderrc_8Fvh --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G/b1 --logfile b1/build.log altree_1.3.2-4.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G/pbuilderrc_Tx27 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G/b2 --logfile b2/build.log altree_1.3.2-4.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/479061/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/290394/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -290,7 +322,7 @@ Get: 153 http://deb.debian.org/debian unstable/main arm64 texlive-latex-recommended all 2025.20250727-3 [8454 kB] Get: 154 http://deb.debian.org/debian unstable/main arm64 texlive-pictures all 2025.20250727-3 [22.1 MB] Get: 155 http://deb.debian.org/debian unstable/main arm64 texlive-latex-extra all 2025.20250727-3 [27.4 MB] -Fetched 319 MB in 2s (140 MB/s) +Fetched 319 MB in 2s (149 MB/s) Preconfiguring packages ... Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) @@ -817,8 +849,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Sep 18 11:30:05 UTC 2025. -Universal Time is now: Thu Sep 18 11:30:05 UTC 2025. +Local time is now: Wed Oct 21 18:00:43 UTC 2026. +Universal Time is now: Wed Oct 21 18:00:43 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:arm64 (1:1.1.8-1+b2) ... @@ -957,7 +989,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/altree-1.3.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../altree_1.3.2-4_source.changes +I: user script /srv/workspace/pbuilder/290394/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/290394/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/altree-1.3.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../altree_1.3.2-4_source.changes dpkg-buildpackage: info: source package altree dpkg-buildpackage: info: source version 1.3.2-4 dpkg-buildpackage: info: source distribution unstable @@ -1555,39 +1591,38 @@ make -C c_sources make[3]: Entering directory '/build/reproducible-path/altree-1.3.2/CUtils/c_sources' aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" chisq.c -Running Mkbootstrap for CUtils () +cp ALTree/SiteSensPerForet.pm blib/lib/ALTree/SiteSensPerForet.pm +cp ALTree/Input.pm blib/lib/ALTree/Input.pm +cp ALTree/Nanova.pm blib/lib/ALTree/Nanova.pm cp ALTree/SitePerTree.pm blib/lib/ALTree/SitePerTree.pm cp ALTree/SiteSens.pm blib/lib/ALTree/SiteSens.pm +cp ALTree/to_rewrite.pm blib/lib/ALTree/to_rewrite.pm +cp ALTree/SitePerForet.pm blib/lib/ALTree/SitePerForet.pm +cp ALTree/Node.pm blib/lib/ALTree/Node.pm +cp ALTree/Sens.pm blib/lib/ALTree/Sens.pm +cp ALTree/Utils.pm blib/lib/ALTree/Utils.pm +cp ALTree/SiteSensPerTree.pm blib/lib/ALTree/SiteSensPerTree.pm cp ALTree/Import.pm blib/lib/ALTree/Import.pm cp ALTree/Foret.pm blib/lib/ALTree/Foret.pm cp ALTree/Tree.pm blib/lib/ALTree/Tree.pm cp ALTree/Base.pm blib/lib/ALTree/Base.pm -cp ALTree/Site.pm blib/lib/ALTree/Site.pm -cp ALTree/SiteSensPerForet.pm blib/lib/ALTree/SiteSensPerForet.pm -cp ALTree/SiteSensPerTree.pm blib/lib/ALTree/SiteSensPerTree.pm cp ALTree/Chi2.pm blib/lib/ALTree/Chi2.pm -cp ALTree/Nanova.pm blib/lib/ALTree/Nanova.pm -cp ALTree/Node.pm blib/lib/ALTree/Node.pm +cp ALTree/Site.pm blib/lib/ALTree/Site.pm cp ALTree/SiteCollection.pm blib/lib/ALTree/SiteCollection.pm -cp ALTree/Input.pm blib/lib/ALTree/Input.pm -cp ALTree/to_rewrite.pm blib/lib/ALTree/to_rewrite.pm -cp ALTree/Sens.pm blib/lib/ALTree/Sens.pm -cp ALTree/Utils.pm blib/lib/ALTree/Utils.pm -cp ALTree/SitePerForet.pm blib/lib/ALTree/SitePerForet.pm aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" double_permutation.c aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" fisher.c aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" mt19937ar.c aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" myrand.c aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" resampling.c "/usr/bin/perl" "/usr/share/perl/5.40.1/ExtUtils/xsubpp" -typemap '/usr/share/perl/5.40/ExtUtils/typemap' CUtils.xs > CUtils.xsc +Running Mkbootstrap for CUtils () +cp lib/ALTree/CUtils.pm ../blib/lib/ALTree/CUtils.pm +AutoSplitting ../blib/lib/ALTree/CUtils.pm (../blib/lib/auto/ALTree/CUtils) aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" rhyper.c aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" stats.c -chmod 644 "CUtils.bs" aarch64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" z.c -"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644 -cp lib/ALTree/CUtils.pm ../blib/lib/ALTree/CUtils.pm -AutoSplitting ../blib/lib/ALTree/CUtils.pm (../blib/lib/auto/ALTree/CUtils) chisq.c: In function 'pochisq': +chmod 644 "CUtils.bs" chisq.c:77:1: warning: old-style function definition [-Wold-style-definition] 77 | pochisq (x, df) | ^~~~~~~ @@ -1595,6 +1630,10 @@ chisq.c:129:1: warning: old-style function definition [-Wold-style-definition] 129 | critchi (p, df) | ^~~~~~~ +"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644 +Please specify prototyping behavior for CUtils.xs (see perlxs manual) +mv CUtils.xsc CUtils.c +aarch64-linux-gnu-gcc -c -ggdb3 -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"1.1\" -DXS_VERSION=\"1.1\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" CUtils.c z.c: In function 'poz': z.c:44:1: warning: old-style function definition [-Wold-style-definition] 44 | poz (z) @@ -1607,9 +1646,6 @@ z.c:12:13: warning: 'sccsfid' defined but not used [-Wunused-variable] 12 | static char sccsfid[] = "@(#) z.c 5.1 (|stat) 12/26/85"; | ^~~~~~~ -Please specify prototyping behavior for CUtils.xs (see perlxs manual) -mv CUtils.xsc CUtils.c -aarch64-linux-gnu-gcc -c -ggdb3 -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"1.1\" -DXS_VERSION=\"1.1\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" CUtils.c In function 'pval_min', inlined from 'double_permutation' at double_permutation.c:182:19: double_permutation.c:125:20: warning: '*(datatype_t *)local' may be used uninitialized [-Wmaybe-uninitialized] @@ -1632,11 +1668,11 @@ chmod 755 ../blib/arch/auto/ALTree/CUtils/CUtils.so Manifying 1 pod document make[2]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils' -cp progs/altree-add-S blib/script/altree-add-S -cp progs/altree-convert blib/script/altree-convert cp progs/altree blib/script/altree -"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-add-S "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree +cp progs/altree-add-S blib/script/altree-add-S +"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-add-S +cp progs/altree-convert blib/script/altree-convert "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-convert Manifying 3 pod documents make[1]: Leaving directory '/build/reproducible-path/altree-1.3.2' @@ -1670,7 +1706,7 @@ ok 3 - double_permutation ok All tests successful. -Files=2, Tests=4, 0 wallclock secs ( 0.03 usr 0.00 sys + 0.12 cusr 0.01 csys = 0.16 CPU) +Files=2, Tests=4, 1 wallclock secs ( 0.02 usr 0.00 sys + 0.11 cusr 0.01 csys = 0.14 CPU) Result: PASS make[2]: Leaving directory '/build/reproducible-path/altree-1.3.2/CUtils' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t @@ -1679,7 +1715,7 @@ ok 1 - use ALTree::Import; ok All tests successful. -Files=1, Tests=1, 1 wallclock secs ( 0.02 usr 0.00 sys + 0.08 cusr 0.02 csys = 0.12 CPU) +Files=1, Tests=1, 0 wallclock secs ( 0.02 usr 0.00 sys + 0.08 cusr 0.01 csys = 0.11 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/altree-1.3.2' create-stamp debian/debhelper-build-stamp @@ -1698,32 +1734,32 @@ Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/auto/ALTree/CUtils/CUtils.so Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/CUtils.pm -Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/SitePerForet.pm -Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Utils.pm -Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Sens.pm -Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/to_rewrite.pm -Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Input.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/SiteCollection.pm -Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Node.pm -Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Nanova.pm -Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Chi2.pm -Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/SiteSensPerTree.pm -Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/SiteSensPerForet.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Site.pm +Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Chi2.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Base.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Tree.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Foret.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Import.pm +Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/SiteSensPerTree.pm +Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Utils.pm +Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Sens.pm +Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Node.pm +Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/SitePerForet.pm +Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/to_rewrite.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/SiteSens.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/SitePerTree.pm +Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Nanova.pm +Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/Input.pm +Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/ALTree/SiteSensPerForet.pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/lib/aarch64-linux-gnu/perl5/5.40/auto/ALTree/CUtils/autosplit.ix Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/share/man/man1/altree-convert.1p Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/share/man/man1/altree-add-S.1p Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/share/man/man1/altree.1p Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/share/man/man3/ALTree::CUtils.3pm Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/bin/altree-add-S -Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/bin/altree Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/bin/altree-convert +Installing /build/reproducible-path/altree-1.3.2/debian/tmp/usr/bin/altree make[1]: Leaving directory '/build/reproducible-path/altree-1.3.2' dh_install debian/rules execute_after_dh_install-arch @@ -1768,9 +1804,9 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'altree-dbgsym' in '../altree-dbgsym_1.3.2-4_arm64.deb'. dpkg-deb: building package 'altree' in '../altree_1.3.2-4_arm64.deb'. dpkg-deb: building package 'altree-examples' in '../altree-examples_1.3.2-4_all.deb'. +dpkg-deb: building package 'altree-dbgsym' in '../altree-dbgsym_1.3.2-4_arm64.deb'. dpkg-genbuildinfo --build=binary -O../altree_1.3.2-4_arm64.buildinfo dpkg-genchanges --build=binary -O../altree_1.3.2-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1778,12 +1814,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/290394/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/290394/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/479061 and its subdirectories -I: Current time: Wed Sep 17 23:36:43 -12 2025 -I: pbuilder-time-stamp: 1758195403 +I: removing directory /srv/workspace/pbuilder/290394 and its subdirectories +I: Current time: Thu Oct 22 08:04:45 +14 2026 +I: pbuilder-time-stamp: 1792605885 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/altree_1.3.2-4.diff: 79.1% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/altree_1.3.2-4.diff.gz b2/build.log: 84.5% -- replaced with stdout Compressing the 1st log... b1/build.log: 84.9% -- replaced with stdout Thu Sep 18 11:41:49 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_altree_unstable_arm64_1758195709 + touch /var/log/reproducible-builds/diffoscope_stamp_altree_unstable_arm64_1758195709 + RESULT=0 + systemd-run '--description=diffoscope on altree/1.3.2-4 in unstable/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_7-97167 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G --run-session -c jenkins-reproducible-unstable-diffoscope-bbe097ed-347e-4be4-94b9-f1deac0c7627 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G/dbd-tmp-tXaK7Em ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G/altree_1.3.2-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G/altree_1.3.2-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G/altree_1.3.2-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G/b1/altree_1.3.2-4_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G/b2/altree_1.3.2-4_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_7-97167.service; invocation ID: 3a96d9bbc6d64ab79ee795c7d6881e1a # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G/altree_1.3.2-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G/altree_1.3.2-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G/altree_1.3.2-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G/b1/altree_1.3.2-4_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.VNitg44G/b2/altree_1.3.2-4_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 201ms CPU time consumed: 170ms Memory peak: 17.2M (swap: 0B) _ _ __ _| | |_ _ __ ___ ___ / _` | | __| '__/ _ \/ _ \ | (_| | | |_| | | __/ __/ \__,_|_|\__|_| \___|\___| Thu Sep 18 11:41:50 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Thu Sep 18 11:41:50 UTC 2025 I: altree from unstable built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-09-18 11:41:50] INFO: Starting at 2025-09-18 11:41:50.582925 [2025-09-18 11:41:50] INFO: Generating the pages of 1 package(s) [2025-09-18 11:41:50] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/arm64/altree didn't produce a buildlog, even though it has been built. [2025-09-18 11:41:50] CRITICAL: https://tests.reproducible-builds.org/debian/forky/arm64/altree didn't produce a buildlog, even though it has been built. [2025-09-18 11:41:50] INFO: Finished at 2025-09-18 11:41:50.864892, took: 0:00:00.281971 Thu Sep 18 11:41:50 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/arm64/altree.html Thu Sep 18 11:41:50 UTC 2025 I: Removing signed altree_1.3.2-4_arm64.buildinfo.asc files: removed './b1/altree_1.3.2-4_arm64.buildinfo.asc' removed './b2/altree_1.3.2-4_arm64.buildinfo.asc' 1758195710 arm64 unstable altree Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/altree_1.3.2-4.rbuild.log: 83.1% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/altree_1.3.2-4.rbuild.log.gz [2025-09-18 11:41:51] INFO: Starting at 2025-09-18 11:41:51.189696 [2025-09-18 11:41:51] INFO: Generating the pages of 1 package(s) [2025-09-18 11:41:51] CRITICAL: https://tests.reproducible-builds.org/debian/forky/arm64/altree didn't produce a buildlog, even though it has been built. [2025-09-18 11:41:51] INFO: Finished at 2025-09-18 11:41:51.463996, took: 0:00:00.274303 All cleanup done. Thu Sep 18 11:41:51 UTC 2025 - total duration: 0h 12m 50s. Thu Sep 18 11:41:51 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-EMKDeie9, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 12min 51.058s CPU time consumed: 3.234s Memory peak: 43.1M (swap: 0B)