Running as unit: rb-build-arm64_7-97271.service; invocation ID: 7fa7f3b99ae348db928bcd180e656c06 ==================================================================================== Thu Sep 18 22:08:59 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_7) on jenkins, called using "codethink04-arm64 codethink03-arm64" as arguments. Thu Sep 18 22:08:59 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-N2dBCRcd" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Sep 18 22:08:59 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Thu Sep 18 22:08:59 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-lLPxTj' Thu Sep 18 22:08:59 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Thu Sep 18 22:08:59 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-OEyFuD' ok, let's check if pizzly is building anywhere yet… ok, pizzly is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of pizzly in experimental on arm64 on jenkins now. 1st build will be done on codethink04-arm64.debian.net. 2nd build will be done on codethink03-arm64.debian.net. ============================================================================= Thu Sep 18 22:09:15 UTC 2025 I: starting to build pizzly/experimental/arm64 on jenkins on '2025-09-18 22:08' Thu Sep 18 22:09:15 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_7/97271/console.log 1758233355 arm64 experimental pizzly Thu Sep 18 22:09:15 UTC 2025 I: Downloading source for experimental/pizzly=0.37.3+ds-10 --2025-09-18 22:09:16-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/pizzly/pizzly_0.37.3%2bds-10.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2026 (2.0K) [text/prs.lines.tag] Saving to: ‘pizzly_0.37.3+ds-10.dsc’ 0K . 100% 246M=0s 2025-09-18 22:09:16 (246 MB/s) - ‘pizzly_0.37.3+ds-10.dsc’ saved [2026/2026] --2025-09-18 22:09:16-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/pizzly/pizzly_0.37.3%2bds-10.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2026 (2.0K) [text/prs.lines.tag] Saving to: ‘pizzly_0.37.3+ds-10.dsc’ 0K . 100% 246M=0s 2025-09-18 22:09:16 (246 MB/s) - ‘pizzly_0.37.3+ds-10.dsc’ saved [2026/2026] Thu Sep 18 22:09:16 UTC 2025 I: pizzly_0.37.3+ds-10.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pizzly Binary: pizzly Architecture: any Version: 0.37.3+ds-10 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/pmelsted/pizzly Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/pizzly Vcs-Git: https://salsa.debian.org/med-team/pizzly.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libseqan2-dev (= 2.5.0~rc3+dfsg-1), help2man, cmake, kallisto, zlib1g-dev Package-List: pizzly deb science optional arch=any Checksums-Sha1: 3c134c7e66314d7c3fdb99d6f9aaa4347d12e713 262304 pizzly_0.37.3+ds.orig.tar.xz 0340b837ff6e82988b044b3603e426b9e4a55982 10912 pizzly_0.37.3+ds-10.debian.tar.xz Checksums-Sha256: 8dd0dfb08a9341d4eeb525679779d3afb641b198c88df646ffc7e72930039678 262304 pizzly_0.37.3+ds.orig.tar.xz 8e3524582f48b83f0529b469649389ca4ce13c638d6cd0b6f81842ae448682eb 10912 pizzly_0.37.3+ds-10.debian.tar.xz Files: cba5c09c8f5493378b068821029df3a5 262304 pizzly_0.37.3+ds.orig.tar.xz 6f670267bbf48372f5eefd597009d1fd 10912 pizzly_0.37.3+ds-10.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmdHQ2AACgkQPCZ2P2xn 5uIpoQ/+LwhAwVJIZVmo/6zsW2laajTRCmxXxcyhmH//V0Jg3pR5MsBA7JN1YQ1m z263K5vFPdnQB2r1JvuqL8zpsiTDaeYzklfGm6jDKmXNwMCSmWdGPQVjOpXi7yUw jpI0aR7mov/UdHHQFWc8AdFKgzkMDoILl45Esk6F3fhJboHqYdJqv3m2zD3lGSjh TCFany04ATRQ2F8ySZzBN7lx5uHoCOLlVu2O6t0WTpgep/oN+B9ZW7yVc96A0m2u iW74JPK0aHM9Py78rFbkO+qUx6YY9XvVPxz8M78/7qDUNJBvxRV/lgstOvSOLBlW KW5F8JVmV1pHJBZAf8MW3FtyNfhzIpObfM760ko8WPo/ntofiQ3wU4Tpt4UKL8mS Aw8HcNJeXhqyPqGf30NylVaTMvUW4GO6JSuN9lyom7tt5TbXOai2t0yu5QzEpEwR lzdeYlhe4CvT3UvYou2loscBd1rLKN67tyVfzpepR24W1//h2z+G7jFGbcfdZCuu QprcCFVdvqazh9sAJag7SGZYdqSzxxNuZy137BnSHsselLBxcl3S/D7D0jkwB1iU Qo5kOsIJAR6Ys5TIeWduWetkiwTvwgMrWwwFs96RUu7PTrmNUpPQAln4PI8HvE+4 c+lw59sOej54vvh/kgeJTOcjV9zOhSg23gcD04Xe1c9q1qAtw98= =4YjQ -----END PGP SIGNATURE----- Thu Sep 18 22:09:16 UTC 2025 I: Checking whether the package is not for us Thu Sep 18 22:09:16 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Thu Sep 18 22:09:16 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Thu Sep 18 22:09:16 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Thu Sep 18 22:09:16 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-oHDJKR' ==================================================================================== Thu Sep 18 22:09:16 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "1 pizzly experimental /srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM 0.37.3+ds-10" as arguments. Thu Sep 18 22:09:16 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-q9JqRiDO" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Sep 18 22:09:17 UTC 2025 I: Downloading source for experimental/pizzly=0.37.3+ds-10 Reading package lists... NOTICE: 'pizzly' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/pizzly.git Please use: git clone https://salsa.debian.org/med-team/pizzly.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 275 kB of source archives. Get:1 http://deb.debian.org/debian experimental/main pizzly 0.37.3+ds-10 (dsc) [2026 B] Get:2 http://deb.debian.org/debian experimental/main pizzly 0.37.3+ds-10 (tar) [262 kB] Get:3 http://deb.debian.org/debian experimental/main pizzly 0.37.3+ds-10 (diff) [10.9 kB] Fetched 275 kB in 0s (2158 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'pizzly' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/pizzly.git Please use: git clone https://salsa.debian.org/med-team/pizzly.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 275 kB of source archives. Get:1 http://deb.debian.org/debian experimental/main pizzly 0.37.3+ds-10 (dsc) [2026 B] Get:2 http://deb.debian.org/debian experimental/main pizzly 0.37.3+ds-10 (tar) [262 kB] Get:3 http://deb.debian.org/debian experimental/main pizzly 0.37.3+ds-10 (diff) [10.9 kB] Fetched 275 kB in 0s (2158 kB/s) Download complete and in download only mode ============================================================================= Building pizzly in experimental on arm64 on codethink04-arm64 now. Date: Thu Sep 18 23:09:17 BST 2025 Date UTC: Thu Sep 18 22:09:17 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Sep 18 10:09:17 -12 2025 I: pbuilder-time-stamp: 1758233357 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pizzly_0.37.3+ds-10.dsc] I: copying [./pizzly_0.37.3+ds.orig.tar.xz] I: copying [./pizzly_0.37.3+ds-10.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./pizzly_0.37.3+ds-10.dsc: no acceptable signature found dpkg-source: info: extracting pizzly in pizzly-0.37.3+ds dpkg-source: info: unpacking pizzly_0.37.3+ds.orig.tar.xz dpkg-source: info: unpacking pizzly_0.37.3+ds-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying executable-not-elf-or-script.patch dpkg-source: info: applying 0002-Upgrade-to-SeqAn-2.5.0.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/197624/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='experimental' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='e63bc6a590a84d36b0bf39d4f3a11bc6' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='197624' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM/pbuilderrc_3evf --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM/b1 --logfile b1/build.log pizzly_0.37.3+ds-10.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/197624/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libseqan2-dev (= 2.5.0~rc3+dfsg-1), help2man, cmake, kallisto, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev (= 2.5.0~rc3+dfsg-1); however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on kallisto; however: Package kallisto is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} kallisto{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 69 newly installed, 0 to remove and 0 not upgraded. Need to get 31.5 MB of archives. After unpacking 118 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: libseqan2-dev (= 2.5.0~rc3+dfsg-1) but it is not going to be installed The following actions will resolve these dependencies: Install the following packages: 1) libseqan2-dev [2.5.0~rc3+dfsg-1 (experimental)] The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} kallisto{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan2-dev{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 70 newly installed, 0 to remove and 0 not upgraded. Need to get 32.7 MB of archives. After unpacking 132 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.7.2-1 [95.7 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-7+b1 [15.2 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-9 [62.8 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-9 [871 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41.1-3 [98.1 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-4+b1 [323 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 28 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.11.0-1 [66.7 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.10-2 [1395 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.16.0-1 [388 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-4 [73.2 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 librhash1 arm64 1.4.6-1 [131 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.51.0-2 [150 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 cmake arm64 4.1.1+really3.31.6-2 [10.1 MB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.26 [91.8 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-5 [540 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 55 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.16-2 [100 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.26 [939 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 help2man arm64 1.49.3+b1 [198 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.15.1-1 [122 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.15.1-1 [18.6 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.16.0-1 [382 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libhtscodecs2 arm64 1.6.1-2 [74.7 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libhts3t64 arm64 1.22.1+ds2-1 [434 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 kallisto arm64 0.48.0+dfsg-4+b2 [256 kB] Get: 69 http://deb.debian.org/debian experimental/main arm64 libseqan2-dev all 2.5.0~rc3+dfsg-1 [1222 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 32.7 MB in 0s (153 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.2-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.2-1) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../01-liblocale-gettext-perl_1.07-7+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... 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Unpacking libkeyutils1:arm64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../27-libkrb5-3_1.21.3-5_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../28-libgssapi-krb5-2_1.21.3-5_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-5) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../29-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libidn2-0:arm64. Preparing to unpack .../30-libidn2-0_2.3.8-4_arm64.deb ... Unpacking libidn2-0:arm64 (2.3.8-4) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../31-libsasl2-modules-db_2.1.28+dfsg1-9_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libsasl2-2:arm64. 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Unpacking libcurl4t64:arm64 (8.16.0-1) ... Selecting previously unselected package libjsoncpp26:arm64. Preparing to unpack .../44-libjsoncpp26_1.9.6-4_arm64.deb ... Unpacking libjsoncpp26:arm64 (1.9.6-4) ... Selecting previously unselected package librhash1:arm64. Preparing to unpack .../45-librhash1_1.4.6-1_arm64.deb ... Unpacking librhash1:arm64 (1.4.6-1) ... Selecting previously unselected package libuv1t64:arm64. Preparing to unpack .../46-libuv1t64_1.51.0-2_arm64.deb ... Unpacking libuv1t64:arm64 (1.51.0-2) ... Selecting previously unselected package cmake. Preparing to unpack .../47-cmake_4.1.1+really3.31.6-2_arm64.deb ... Unpacking cmake (4.1.1+really3.31.6-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../48-libdebhelper-perl_13.26_all.deb ... Unpacking libdebhelper-perl (13.26) ... Selecting previously unselected package libtool. Preparing to unpack .../49-libtool_2.5.4-5_all.deb ... Unpacking libtool (2.5.4-5) ... 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Selecting previously unselected package libngtcp2-crypto-gnutls8:arm64. Preparing to unpack .../62-libngtcp2-crypto-gnutls8_1.15.1-1_arm64.deb ... Unpacking libngtcp2-crypto-gnutls8:arm64 (1.15.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:arm64. Preparing to unpack .../63-libcurl3t64-gnutls_8.16.0-1_arm64.deb ... Unpacking libcurl3t64-gnutls:arm64 (8.16.0-1) ... Selecting previously unselected package libdeflate0:arm64. Preparing to unpack .../64-libdeflate0_1.23-2_arm64.deb ... Unpacking libdeflate0:arm64 (1.23-2) ... Selecting previously unselected package libhtscodecs2:arm64. Preparing to unpack .../65-libhtscodecs2_1.6.1-2_arm64.deb ... Unpacking libhtscodecs2:arm64 (1.6.1-2) ... Selecting previously unselected package libhts3t64:arm64. Preparing to unpack .../66-libhts3t64_1.22.1+ds2-1_arm64.deb ... Unpacking libhts3t64:arm64 (1.22.1+ds2-1) ... Selecting previously unselected package kallisto. Preparing to unpack .../67-kallisto_0.48.0+dfsg-4+b2_arm64.deb ... Unpacking kallisto (0.48.0+dfsg-4+b2) ... Selecting previously unselected package libseqan2-dev. Preparing to unpack .../68-libseqan2-dev_2.5.0~rc3+dfsg-1_all.deb ... Unpacking libseqan2-dev (2.5.0~rc3+dfsg-1) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../69-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libhtscodecs2:arm64 (1.6.1-2) ... Setting up libexpat1:arm64 (2.7.2-1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libkeyutils1:arm64 (1.6.3-6) ... Setting up bsdextrautils (2.41.1-3) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libbrotli1:arm64 (1.1.0-2+b7) ... Setting up libuv1t64:arm64 (1.51.0-2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up libnghttp2-14:arm64 (1.64.0-1.1+b1) ... Setting up libdeflate0:arm64 (1.23-2) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up libcom-err2:arm64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.193-3) ... Setting up libkrb5support0:arm64 (1.21.3-5) ... Setting up libseqan2-dev (2.5.0~rc3+dfsg-1) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-9) ... Setting up autotools-dev (20240727.1) ... Setting up libjsoncpp26:arm64 (1.9.6-4) ... Setting up libproc2-0:arm64 (2:4.0.4-9) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libk5crypto3:arm64 (1.21.3-5) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-9) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:arm64 (1.11.0-1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up procps (2:4.0.4-9) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up libngtcp2-16:arm64 (1.15.1-1) ... Setting up cmake-data (4.1.1+really3.31.6-2) ... Setting up librhash1:arm64 (1.4.6-1) ... Setting up libkrb5-3:arm64 (1.21.3-5) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libarchive13t64:arm64 (3.7.4-4+b1) ... Setting up libldap2:arm64 (2.6.10+dfsg-1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up libidn2-0:arm64 (2.3.8-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3+b1) ... Setting up dh-autoreconf (21) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libgnutls30t64:arm64 (3.8.10-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.15.1-1) ... Setting up libcurl4t64:arm64 (8.16.0-1) ... Setting up libcurl3t64-gnutls:arm64 (8.16.0-1) ... Setting up debhelper (13.26) ... Setting up cmake (4.1.1+really3.31.6-2) ... Setting up libhts3t64:arm64 (1.22.1+ds2-1) ... Setting up kallisto (0.48.0+dfsg-4+b2) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pizzly-0.37.3+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pizzly_0.37.3+ds-10_source.changes dpkg-buildpackage: info: source package pizzly dpkg-buildpackage: info: source version 0.37.3+ds-10 dpkg-buildpackage: info: source distribution experimental dpkg-buildpackage: info: source changed by Enrico Seiler dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/pizzly-0.37.3+ds' dh_auto_clean rm -f debian/pizzly.1 make[1]: Leaving directory '/build/reproducible-path/pizzly-0.37.3+ds' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/pizzly.substvars debian/files rm -fr -- debian/pizzly/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:2 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The CXX compiler identification is GNU 15.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.3.1") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Configuring done (0.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu dh_auto_build cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/pizzly-0.37.3+ds -B/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' make -f CMakeFiles/pizzly.dir/build.make CMakeFiles/pizzly.dir/depend make[3]: Entering directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' cd /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pizzly-0.37.3+ds /build/reproducible-path/pizzly-0.37.3+ds /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu/CMakeFiles/pizzly.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' make -f CMakeFiles/pizzly.dir/build.make CMakeFiles/pizzly.dir/build make[3]: Entering directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' [ 50%] Building CXX object CMakeFiles/pizzly.dir/main.cpp.o /usr/bin/c++ -I/build/reproducible-path/pizzly-0.37.3+ds/. -g -O2 -ffile-prefix-map=/build/reproducible-path/pizzly-0.37.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DSEQAN_HAS_ZLIB=1 -MD -MT CMakeFiles/pizzly.dir/main.cpp.o -MF CMakeFiles/pizzly.dir/main.cpp.o.d -o CMakeFiles/pizzly.dir/main.cpp.o -c /build/reproducible-path/pizzly-0.37.3+ds/main.cpp In file included from /build/reproducible-path/pizzly-0.37.3+ds/main.cpp:6: /build/reproducible-path/pizzly-0.37.3+ds/common.h: In constructor 'ProgramOptions::ProgramOptions()': /build/reproducible-path/pizzly-0.37.3+ds/common.h:18:7: warning: 'ProgramOptions::kmerScore' will be initialized after [-Wreorder] 18 | int kmerScore; | ^~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/common.h:17:7: warning: 'int ProgramOptions::insertSize' [-Wreorder] 17 | int insertSize; | ^~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/common.h:19:3: warning: when initialized here [-Wreorder] 19 | ProgramOptions() : kmerScore(2), insertSize(400), ignoreProtein(false) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/common.h:17:7: warning: 'ProgramOptions::insertSize' will be initialized after [-Wreorder] 17 | int insertSize; | ^~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/common.h:14:8: warning: 'bool ProgramOptions::ignoreProtein' [-Wreorder] 14 | bool ignoreProtein; | ^~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/common.h:19:3: warning: when initialized here [-Wreorder] 19 | ProgramOptions() : kmerScore(2), insertSize(400), ignoreProtein(false) {} | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/pizzly-0.37.3+ds/main.cpp:8: /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp: In member function 'bool Transcriptome::translateTrPosition(const std::string&, int, std::string&, int&, std::string&)': /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:117:10: warning: unused variable 'fw' [-Wunused-variable] 117 | bool fw = (trxmodel.strand == Strandedness::FORWARD); | ^~ /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp: In function 'void writeTranscriptome(Transcriptome&, std::ostream&)': /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:146:17: warning: unused variable 'gene_id' [-Wunused-variable] 146 | const auto &gene_id = gene.first; | ^~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:172:19: warning: unused variable 'tr_id' [-Wunused-variable] 172 | const auto &tr_id = trlist.first; | ^~~~~ /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp: In function 'void parseGTF(Transcriptome&, const std::string&, const ProgramOptions&)': /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:282:25: warning: comparison of integer expressions of different signedness: 'int' and 'seqan2::Size > >::Type' {aka 'long unsigned int'} [-Wsign-compare] 282 | for (int i = 0; i < length(record.tagNames); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:329:25: warning: comparison of integer expressions of different signedness: 'int' and 'seqan2::Size > >::Type' {aka 'long unsigned int'} [-Wsign-compare] 329 | for (int i = 0; i < length(record.tagNames); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:392:25: warning: comparison of integer expressions of different signedness: 'int' and 'seqan2::Size > >::Type' {aka 'long unsigned int'} [-Wsign-compare] 392 | for (int i = 0; i < length(record.tagNames); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/pizzly-0.37.3+ds/main.cpp:9: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:205:27: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 205 | return std::move(m); | ~~~~~~~~~^~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:205:27: note: remove 'std::move' call /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:214:21: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 214 | return std::move(m); | ~~~~~~~~~^~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:214:21: note: remove 'std::move' call /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:251:9: warning: unused variable 'matchlen' [-Wunused-variable] 251 | int matchlen = seqan2::length(krseq); | ^~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:311:19: warning: comparison of integer expressions of different signedness: 'int' and 'seqan2::Size > >::Type' {aka 'long unsigned int'} [-Wsign-compare] 311 | if (tr_stop > seqan2::length(trseq)) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:323:21: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 323 | return std::move(tlist); | ~~~~~~~~~^~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:323:21: note: remove 'std::move' call /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:709:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 709 | for (int i = 0; i < trm.exons.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:738:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 738 | for (int i = 0; i < trm.exons.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:765:11: warning: unused variable 'gap' [-Wunused-variable] 765 | int gap = d2 - d1; | ^~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:781:21: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 781 | return std::move(ret); | ~~~~~~~~~^~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:781:21: note: remove 'std::move' call /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:883:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 883 | for (int i = 0; i < v.size(); i++) { | ~~^~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:929:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 929 | for (int i = 0; i < readsInTr.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:867:17: warning: unused variable 'split_reads' [-Wunused-variable] 867 | int split_reads = spp.second; | ^~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:1033:29: warning: loop variable 'p' creates a copy from type 'const std::pair > >' [-Wrange-loop-construct] 1033 | for (const auto p : trfmap) { | ^ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:1033:29: note: use reference type to prevent copying 1033 | for (const auto p : trfmap) { | ^ | & /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:1091:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1091 | for (int i = 0; i < readsInTr.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:1115:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1115 | for (int i = 0; i < v.size(); i++) { | ~~^~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:1112:18: warning: unused variable 'firstJsonRead' [-Wunused-variable] 1112 | bool firstJsonRead = true; | ^~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/main.cpp: In function 'int main(int, const char**)': /build/reproducible-path/pizzly-0.37.3+ds/main.cpp:126:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::unordered_map, seqan2::String > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 126 | } else if (numTxpSeqFound != trx.seqs.size()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp: In function 'Strandedness operator~(const Strandedness&)': /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:18:1: warning: control reaches end of non-void function [-Wreturn-type] 18 | } | ^ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:435:15: warning: 'splitStrand' may be used uninitialized [-Wmaybe-uninitialized] 435 | if (forwardRead) { | ^~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:389:22: note: 'splitStrand' was declared here 389 | Strandedness splitStrand, safeStrand; | ^~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In function 'bool filterFusionRecord(const Transcriptome&, ProgramOptions&, const FusionRecord&, SplitRecord&)': /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:602:25: warning: 'st1' may be used uninitialized [-Wmaybe-uninitialized] 602 | splitrec.dir1 = st1 == Strandedness::FORWARD; // check read 1 | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:554:18: note: 'st1' was declared here 554 | Strandedness st1,st2; | ^~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:603:25: warning: 'st2' may be used uninitialized [-Wmaybe-uninitialized] 603 | splitrec.dir2 = st2 == Strandedness::FORWARD; // check read 2 | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:554:22: note: 'st2' was declared here 554 | Strandedness st1,st2; | ^~~ [100%] Linking CXX executable pizzly /usr/bin/cmake -E cmake_link_script CMakeFiles/pizzly.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pizzly-0.37.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DSEQAN_HAS_ZLIB=1 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/pizzly.dir/link.d CMakeFiles/pizzly.dir/main.cpp.o -o pizzly -lpthread -lz make[3]: Leaving directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' [100%] Built target pizzly make[2]: Leaving directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' dh_auto_test rm -fr -- /tmp/dh-xdg-rundir-r3ED942Q create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/pizzly.substvars rm -fr -- debian/.debhelper/generated/pizzly/ debian/pizzly/ debian/tmp/ dh_auto_install --destdir=debian/pizzly/ install -m0755 -d /build/reproducible-path/pizzly-0.37.3\+ds/debian/pizzly debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/pizzly-0.37.3+ds' help2man -N -n pizzly -s 1 obj-*/pizzly > debian/pizzly.1 dh_install install -m0755 -d debian/pizzly/usr/bin cp --reflink=auto -a ./obj-aarch64-linux-gnu/pizzly ./scripts/flatten_json.py ./scripts/get_fragment_length.py debian/pizzly/usr/bin/ make[1]: Leaving directory '/build/reproducible-path/pizzly-0.37.3+ds' dh_installdocs install -m0755 -d debian/pizzly/usr/share/doc/pizzly install -m0755 -d debian/pizzly/usr/share/doc/pizzly cp --reflink=auto -a ./README.md debian/pizzly/usr/share/doc/pizzly cp --reflink=auto -a ./debian/README.Debian debian/pizzly/usr/share/doc/pizzly chmod -R u\+rw,go=rX debian/pizzly/usr/share/doc install -p -m0644 debian/README.Debian debian/pizzly/usr/share/doc/pizzly/README.Debian install -p -m0644 debian/copyright debian/pizzly/usr/share/doc/pizzly/copyright dh_installchangelogs install -m0755 -d debian/pizzly/usr/share/doc/pizzly install -p -m0644 debian/.debhelper/generated/pizzly/dh_installchangelogs.dch.trimmed debian/pizzly/usr/share/doc/pizzly/changelog.Debian dh_installman install -m0755 -d debian/pizzly/usr/share/man/man1/ install -p -m0644 ./debian/pizzly.1 debian/pizzly/usr/share/man/man1/pizzly.1 man-recode --to-code UTF-8 --suffix .dh-new debian/pizzly/usr/share/man/man1/pizzly.1 mv debian/pizzly/usr/share/man/man1/pizzly.1.dh-new debian/pizzly/usr/share/man/man1/pizzly.1 chmod 0644 -- debian/pizzly/usr/share/man/man1/pizzly.1 dh_lintian install -m0755 -d debian/pizzly/usr/share/lintian/overrides install -p -m0644 debian/lintian-overrides debian/pizzly/usr/share/lintian/overrides/pizzly dh_perl dh_link install -m0755 -d debian/pizzly/usr/bin rm -f debian/pizzly/usr/bin/pizzly_flatten_json.py ln -s flatten_json.py debian/pizzly/usr/bin/pizzly_flatten_json.py dh_strip_nondeterminism dh_compress cd debian/pizzly chmod a-x usr/share/doc/pizzly/changelog.Debian usr/share/man/man1/pizzly.1 gzip -9nf usr/share/doc/pizzly/changelog.Debian usr/share/man/man1/pizzly.1 cd '/build/reproducible-path/pizzly-0.37.3+ds' dh_fixperms find debian/pizzly ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/pizzly/usr/share/doc -type f -a -true -a ! -regex 'debian/pizzly/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pizzly/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/pizzly/usr/share/man debian/pizzly/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pizzly -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pizzly/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_dwz -a dwz -- debian/pizzly/usr/bin/pizzly dh_strip -a install -m0755 -d debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/f4 objcopy --only-keep-debug --compress-debug-sections debian/pizzly/usr/bin/pizzly debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/f4/27958d47e24a0a87584cdbf8252b9f11ce2727.debug chmod 0644 -- debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/f4/27958d47e24a0a87584cdbf8252b9f11ce2727.debug strip --remove-section=.comment --remove-section=.note debian/pizzly/usr/bin/pizzly objcopy --add-gnu-debuglink debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/f4/27958d47e24a0a87584cdbf8252b9f11ce2727.debug debian/pizzly/usr/bin/pizzly install -m0755 -d debian/.debhelper/pizzly/dbgsym-root/usr/share/doc ln -s pizzly debian/.debhelper/pizzly/dbgsym-root/usr/share/doc/pizzly-dbgsym install -m0755 -d debian/.debhelper/pizzly dh_makeshlibs -a rm -f debian/pizzly/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/pizzly/DEBIAN dpkg-shlibdeps -Tdebian/pizzly.substvars debian/pizzly/usr/bin/pizzly dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb install -m0755 -d debian/pizzly/DEBIAN dh_gencontrol install -m0755 -d debian/pizzly/DEBIAN echo misc:Depends= >> debian/pizzly.substvars echo misc:Pre-Depends= >> debian/pizzly.substvars install -m0755 -d debian/.debhelper/pizzly/dbgsym-root/DEBIAN dpkg-gencontrol -ppizzly -ldebian/changelog -Tdebian/pizzly.substvars -cdebian/control -Pdebian/.debhelper/pizzly/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=pizzly-dbgsym "-DDepends=pizzly (= \${binary:Version})" "-DDescription=debug symbols for pizzly" -DBuild-Ids=f427958d47e24a0a87584cdbf8252b9f11ce2727 -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/pizzly/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppizzly -ldebian/changelog -Tdebian/pizzly.substvars -cdebian/control -Pdebian/pizzly chmod 0644 -- debian/pizzly/DEBIAN/control dh_md5sums install -m0755 -d debian/pizzly/DEBIAN cd debian/pizzly >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/pizzly/DEBIAN/md5sums install -m0755 -d debian/.debhelper/pizzly/dbgsym-root/DEBIAN cd debian/.debhelper/pizzly/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/pizzly/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/pizzly .. dpkg-deb --root-owner-group --build debian/.debhelper/pizzly/dbgsym-root .. dpkg-deb: building package 'pizzly' in '../pizzly_0.37.3+ds-10_arm64.deb'. dpkg-deb: building package 'pizzly-dbgsym' in '../pizzly-dbgsym_0.37.3+ds-10_arm64.deb'. dpkg-genbuildinfo --build=binary -O../pizzly_0.37.3+ds-10_arm64.buildinfo dpkg-genchanges --build=binary -O../pizzly_0.37.3+ds-10_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/197624 and its subdirectories I: Current time: Thu Sep 18 10:10:43 -12 2025 I: pbuilder-time-stamp: 1758233443 Thu Sep 18 22:10:43 UTC 2025 I: Signing ./b1/pizzly_0.37.3+ds-10_arm64.buildinfo as pizzly_0.37.3+ds-10_arm64.buildinfo.asc Thu Sep 18 22:10:43 UTC 2025 I: Signed ./b1/pizzly_0.37.3+ds-10_arm64.buildinfo as ./b1/pizzly_0.37.3+ds-10_arm64.buildinfo.asc Thu Sep 18 22:10:43 UTC 2025 - build #1 for pizzly/experimental/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Thu Sep 18 22:10:43 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-q9JqRiDO, removing. /srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Sep 18 22:10 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 18 22:09 b2 -rw-rw-r-- 1 jenkins jenkins 2026 Nov 27 2024 pizzly_0.37.3+ds-10.dsc -rw------- 1 jenkins jenkins 3174 Sep 18 22:09 rbuildlog.VdI5emE /srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM/b1: total 4116 -rw-r--r-- 1 jenkins jenkins 56751 Sep 18 22:10 build.log -rw-r--r-- 1 jenkins jenkins 3842744 Sep 18 22:10 pizzly-dbgsym_0.37.3+ds-10_arm64.deb -rw-r--r-- 1 jenkins jenkins 10912 Sep 18 22:10 pizzly_0.37.3+ds-10.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2026 Sep 18 22:10 pizzly_0.37.3+ds-10.dsc -rw-r--r-- 1 jenkins jenkins 6234 Sep 18 22:10 pizzly_0.37.3+ds-10_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7116 Sep 18 22:10 pizzly_0.37.3+ds-10_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1507 Sep 18 22:10 pizzly_0.37.3+ds-10_arm64.changes -rw-r--r-- 1 jenkins jenkins 268684 Sep 18 22:10 pizzly_0.37.3+ds-10_arm64.deb -rw-r--r-- 1 jenkins jenkins 1368 Sep 18 22:10 pizzly_0.37.3+ds-10_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM/b2: total 0 Thu Sep 18 22:10:44 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Sep 18 10:09:17 -12 2025 I: pbuilder-time-stamp: 1758233357 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pizzly_0.37.3+ds-10.dsc] I: copying [./pizzly_0.37.3+ds.orig.tar.xz] I: copying [./pizzly_0.37.3+ds-10.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./pizzly_0.37.3+ds-10.dsc: no acceptable signature found dpkg-source: info: extracting pizzly in pizzly-0.37.3+ds dpkg-source: info: unpacking pizzly_0.37.3+ds.orig.tar.xz dpkg-source: info: unpacking pizzly_0.37.3+ds-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying executable-not-elf-or-script.patch dpkg-source: info: applying 0002-Upgrade-to-SeqAn-2.5.0.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/197624/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='experimental' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='e63bc6a590a84d36b0bf39d4f3a11bc6' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='197624' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM/pbuilderrc_3evf --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM/b1 --logfile b1/build.log pizzly_0.37.3+ds-10.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/197624/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libseqan2-dev (= 2.5.0~rc3+dfsg-1), help2man, cmake, kallisto, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev (= 2.5.0~rc3+dfsg-1); however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on kallisto; however: Package kallisto is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} kallisto{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 69 newly installed, 0 to remove and 0 not upgraded. Need to get 31.5 MB of archives. After unpacking 118 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: libseqan2-dev (= 2.5.0~rc3+dfsg-1) but it is not going to be installed The following actions will resolve these dependencies: Install the following packages: 1) libseqan2-dev [2.5.0~rc3+dfsg-1 (experimental)] The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} kallisto{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan2-dev{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 70 newly installed, 0 to remove and 0 not upgraded. Need to get 32.7 MB of archives. After unpacking 132 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.7.2-1 [95.7 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-7+b1 [15.2 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-9 [62.8 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-9 [871 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41.1-3 [98.1 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-4+b1 [323 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 28 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.11.0-1 [66.7 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.10-2 [1395 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.16.0-1 [388 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-4 [73.2 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 librhash1 arm64 1.4.6-1 [131 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.51.0-2 [150 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 cmake arm64 4.1.1+really3.31.6-2 [10.1 MB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.26 [91.8 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-5 [540 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 55 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.16-2 [100 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.26 [939 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 help2man arm64 1.49.3+b1 [198 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.15.1-1 [122 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.15.1-1 [18.6 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.16.0-1 [382 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libhtscodecs2 arm64 1.6.1-2 [74.7 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libhts3t64 arm64 1.22.1+ds2-1 [434 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 kallisto arm64 0.48.0+dfsg-4+b2 [256 kB] Get: 69 http://deb.debian.org/debian experimental/main arm64 libseqan2-dev all 2.5.0~rc3+dfsg-1 [1222 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 32.7 MB in 0s (153 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.2-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.2-1) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../01-liblocale-gettext-perl_1.07-7+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... 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Unpacking libkeyutils1:arm64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../27-libkrb5-3_1.21.3-5_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../28-libgssapi-krb5-2_1.21.3-5_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-5) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../29-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libidn2-0:arm64. Preparing to unpack .../30-libidn2-0_2.3.8-4_arm64.deb ... Unpacking libidn2-0:arm64 (2.3.8-4) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../31-libsasl2-modules-db_2.1.28+dfsg1-9_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libsasl2-2:arm64. 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Unpacking libcurl4t64:arm64 (8.16.0-1) ... Selecting previously unselected package libjsoncpp26:arm64. Preparing to unpack .../44-libjsoncpp26_1.9.6-4_arm64.deb ... Unpacking libjsoncpp26:arm64 (1.9.6-4) ... Selecting previously unselected package librhash1:arm64. Preparing to unpack .../45-librhash1_1.4.6-1_arm64.deb ... Unpacking librhash1:arm64 (1.4.6-1) ... Selecting previously unselected package libuv1t64:arm64. Preparing to unpack .../46-libuv1t64_1.51.0-2_arm64.deb ... Unpacking libuv1t64:arm64 (1.51.0-2) ... Selecting previously unselected package cmake. Preparing to unpack .../47-cmake_4.1.1+really3.31.6-2_arm64.deb ... Unpacking cmake (4.1.1+really3.31.6-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../48-libdebhelper-perl_13.26_all.deb ... Unpacking libdebhelper-perl (13.26) ... Selecting previously unselected package libtool. Preparing to unpack .../49-libtool_2.5.4-5_all.deb ... Unpacking libtool (2.5.4-5) ... 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Selecting previously unselected package libngtcp2-crypto-gnutls8:arm64. Preparing to unpack .../62-libngtcp2-crypto-gnutls8_1.15.1-1_arm64.deb ... Unpacking libngtcp2-crypto-gnutls8:arm64 (1.15.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:arm64. Preparing to unpack .../63-libcurl3t64-gnutls_8.16.0-1_arm64.deb ... Unpacking libcurl3t64-gnutls:arm64 (8.16.0-1) ... Selecting previously unselected package libdeflate0:arm64. Preparing to unpack .../64-libdeflate0_1.23-2_arm64.deb ... Unpacking libdeflate0:arm64 (1.23-2) ... Selecting previously unselected package libhtscodecs2:arm64. Preparing to unpack .../65-libhtscodecs2_1.6.1-2_arm64.deb ... Unpacking libhtscodecs2:arm64 (1.6.1-2) ... Selecting previously unselected package libhts3t64:arm64. Preparing to unpack .../66-libhts3t64_1.22.1+ds2-1_arm64.deb ... Unpacking libhts3t64:arm64 (1.22.1+ds2-1) ... Selecting previously unselected package kallisto. Preparing to unpack .../67-kallisto_0.48.0+dfsg-4+b2_arm64.deb ... Unpacking kallisto (0.48.0+dfsg-4+b2) ... Selecting previously unselected package libseqan2-dev. Preparing to unpack .../68-libseqan2-dev_2.5.0~rc3+dfsg-1_all.deb ... Unpacking libseqan2-dev (2.5.0~rc3+dfsg-1) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../69-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libhtscodecs2:arm64 (1.6.1-2) ... Setting up libexpat1:arm64 (2.7.2-1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libkeyutils1:arm64 (1.6.3-6) ... Setting up bsdextrautils (2.41.1-3) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libbrotli1:arm64 (1.1.0-2+b7) ... Setting up libuv1t64:arm64 (1.51.0-2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up libnghttp2-14:arm64 (1.64.0-1.1+b1) ... Setting up libdeflate0:arm64 (1.23-2) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up libcom-err2:arm64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.193-3) ... Setting up libkrb5support0:arm64 (1.21.3-5) ... Setting up libseqan2-dev (2.5.0~rc3+dfsg-1) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-9) ... Setting up autotools-dev (20240727.1) ... Setting up libjsoncpp26:arm64 (1.9.6-4) ... Setting up libproc2-0:arm64 (2:4.0.4-9) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libk5crypto3:arm64 (1.21.3-5) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-9) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:arm64 (1.11.0-1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up procps (2:4.0.4-9) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up libngtcp2-16:arm64 (1.15.1-1) ... Setting up cmake-data (4.1.1+really3.31.6-2) ... Setting up librhash1:arm64 (1.4.6-1) ... Setting up libkrb5-3:arm64 (1.21.3-5) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libarchive13t64:arm64 (3.7.4-4+b1) ... Setting up libldap2:arm64 (2.6.10+dfsg-1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up libidn2-0:arm64 (2.3.8-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3+b1) ... Setting up dh-autoreconf (21) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libgnutls30t64:arm64 (3.8.10-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.15.1-1) ... Setting up libcurl4t64:arm64 (8.16.0-1) ... Setting up libcurl3t64-gnutls:arm64 (8.16.0-1) ... Setting up debhelper (13.26) ... Setting up cmake (4.1.1+really3.31.6-2) ... Setting up libhts3t64:arm64 (1.22.1+ds2-1) ... Setting up kallisto (0.48.0+dfsg-4+b2) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pizzly-0.37.3+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pizzly_0.37.3+ds-10_source.changes dpkg-buildpackage: info: source package pizzly dpkg-buildpackage: info: source version 0.37.3+ds-10 dpkg-buildpackage: info: source distribution experimental dpkg-buildpackage: info: source changed by Enrico Seiler dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/pizzly-0.37.3+ds' dh_auto_clean rm -f debian/pizzly.1 make[1]: Leaving directory '/build/reproducible-path/pizzly-0.37.3+ds' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/pizzly.substvars debian/files rm -fr -- debian/pizzly/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:2 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The CXX compiler identification is GNU 15.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.3.1") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Configuring done (0.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu dh_auto_build cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/pizzly-0.37.3+ds -B/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' make -f CMakeFiles/pizzly.dir/build.make CMakeFiles/pizzly.dir/depend make[3]: Entering directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' cd /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pizzly-0.37.3+ds /build/reproducible-path/pizzly-0.37.3+ds /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu/CMakeFiles/pizzly.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' make -f CMakeFiles/pizzly.dir/build.make CMakeFiles/pizzly.dir/build make[3]: Entering directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' [ 50%] Building CXX object CMakeFiles/pizzly.dir/main.cpp.o /usr/bin/c++ -I/build/reproducible-path/pizzly-0.37.3+ds/. -g -O2 -ffile-prefix-map=/build/reproducible-path/pizzly-0.37.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DSEQAN_HAS_ZLIB=1 -MD -MT CMakeFiles/pizzly.dir/main.cpp.o -MF CMakeFiles/pizzly.dir/main.cpp.o.d -o CMakeFiles/pizzly.dir/main.cpp.o -c /build/reproducible-path/pizzly-0.37.3+ds/main.cpp In file included from /build/reproducible-path/pizzly-0.37.3+ds/main.cpp:6: /build/reproducible-path/pizzly-0.37.3+ds/common.h: In constructor 'ProgramOptions::ProgramOptions()': /build/reproducible-path/pizzly-0.37.3+ds/common.h:18:7: warning: 'ProgramOptions::kmerScore' will be initialized after [-Wreorder] 18 | int kmerScore; | ^~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/common.h:17:7: warning: 'int ProgramOptions::insertSize' [-Wreorder] 17 | int insertSize; | ^~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/common.h:19:3: warning: when initialized here [-Wreorder] 19 | ProgramOptions() : kmerScore(2), insertSize(400), ignoreProtein(false) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/common.h:17:7: warning: 'ProgramOptions::insertSize' will be initialized after [-Wreorder] 17 | int insertSize; | ^~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/common.h:14:8: warning: 'bool ProgramOptions::ignoreProtein' [-Wreorder] 14 | bool ignoreProtein; | ^~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/common.h:19:3: warning: when initialized here [-Wreorder] 19 | ProgramOptions() : kmerScore(2), insertSize(400), ignoreProtein(false) {} | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/pizzly-0.37.3+ds/main.cpp:8: /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp: In member function 'bool Transcriptome::translateTrPosition(const std::string&, int, std::string&, int&, std::string&)': /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:117:10: warning: unused variable 'fw' [-Wunused-variable] 117 | bool fw = (trxmodel.strand == Strandedness::FORWARD); | ^~ /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp: In function 'void writeTranscriptome(Transcriptome&, std::ostream&)': /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:146:17: warning: unused variable 'gene_id' [-Wunused-variable] 146 | const auto &gene_id = gene.first; | ^~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:172:19: warning: unused variable 'tr_id' [-Wunused-variable] 172 | const auto &tr_id = trlist.first; | ^~~~~ /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp: In function 'void parseGTF(Transcriptome&, const std::string&, const ProgramOptions&)': /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:282:25: warning: comparison of integer expressions of different signedness: 'int' and 'seqan2::Size > >::Type' {aka 'long unsigned int'} [-Wsign-compare] 282 | for (int i = 0; i < length(record.tagNames); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:329:25: warning: comparison of integer expressions of different signedness: 'int' and 'seqan2::Size > >::Type' {aka 'long unsigned int'} [-Wsign-compare] 329 | for (int i = 0; i < length(record.tagNames); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:392:25: warning: comparison of integer expressions of different signedness: 'int' and 'seqan2::Size > >::Type' {aka 'long unsigned int'} [-Wsign-compare] 392 | for (int i = 0; i < length(record.tagNames); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/pizzly-0.37.3+ds/main.cpp:9: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:205:27: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 205 | return std::move(m); | ~~~~~~~~~^~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:205:27: note: remove 'std::move' call /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:214:21: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 214 | return std::move(m); | ~~~~~~~~~^~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:214:21: note: remove 'std::move' call /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:251:9: warning: unused variable 'matchlen' [-Wunused-variable] 251 | int matchlen = seqan2::length(krseq); | ^~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:311:19: warning: comparison of integer expressions of different signedness: 'int' and 'seqan2::Size > >::Type' {aka 'long unsigned int'} [-Wsign-compare] 311 | if (tr_stop > seqan2::length(trseq)) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:323:21: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 323 | return std::move(tlist); | ~~~~~~~~~^~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:323:21: note: remove 'std::move' call /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:709:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 709 | for (int i = 0; i < trm.exons.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:738:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 738 | for (int i = 0; i < trm.exons.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:765:11: warning: unused variable 'gap' [-Wunused-variable] 765 | int gap = d2 - d1; | ^~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:781:21: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 781 | return std::move(ret); | ~~~~~~~~~^~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:781:21: note: remove 'std::move' call /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:883:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 883 | for (int i = 0; i < v.size(); i++) { | ~~^~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:929:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 929 | for (int i = 0; i < readsInTr.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:867:17: warning: unused variable 'split_reads' [-Wunused-variable] 867 | int split_reads = spp.second; | ^~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:1033:29: warning: loop variable 'p' creates a copy from type 'const std::pair > >' [-Wrange-loop-construct] 1033 | for (const auto p : trfmap) { | ^ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:1033:29: note: use reference type to prevent copying 1033 | for (const auto p : trfmap) { | ^ | & /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:1091:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1091 | for (int i = 0; i < readsInTr.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:1115:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1115 | for (int i = 0; i < v.size(); i++) { | ~~^~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:1112:18: warning: unused variable 'firstJsonRead' [-Wunused-variable] 1112 | bool firstJsonRead = true; | ^~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/main.cpp: In function 'int main(int, const char**)': /build/reproducible-path/pizzly-0.37.3+ds/main.cpp:126:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::unordered_map, seqan2::String > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 126 | } else if (numTxpSeqFound != trx.seqs.size()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp: In function 'Strandedness operator~(const Strandedness&)': /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:18:1: warning: control reaches end of non-void function [-Wreturn-type] 18 | } | ^ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:435:15: warning: 'splitStrand' may be used uninitialized [-Wmaybe-uninitialized] 435 | if (forwardRead) { | ^~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:389:22: note: 'splitStrand' was declared here 389 | Strandedness splitStrand, safeStrand; | ^~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In function 'bool filterFusionRecord(const Transcriptome&, ProgramOptions&, const FusionRecord&, SplitRecord&)': /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:602:25: warning: 'st1' may be used uninitialized [-Wmaybe-uninitialized] 602 | splitrec.dir1 = st1 == Strandedness::FORWARD; // check read 1 | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:554:18: note: 'st1' was declared here 554 | Strandedness st1,st2; | ^~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:603:25: warning: 'st2' may be used uninitialized [-Wmaybe-uninitialized] 603 | splitrec.dir2 = st2 == Strandedness::FORWARD; // check read 2 | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:554:22: note: 'st2' was declared here 554 | Strandedness st1,st2; | ^~~ [100%] Linking CXX executable pizzly /usr/bin/cmake -E cmake_link_script CMakeFiles/pizzly.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pizzly-0.37.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DSEQAN_HAS_ZLIB=1 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/pizzly.dir/link.d CMakeFiles/pizzly.dir/main.cpp.o -o pizzly -lpthread -lz make[3]: Leaving directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' [100%] Built target pizzly make[2]: Leaving directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' dh_auto_test rm -fr -- /tmp/dh-xdg-rundir-r3ED942Q create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/pizzly.substvars rm -fr -- debian/.debhelper/generated/pizzly/ debian/pizzly/ debian/tmp/ dh_auto_install --destdir=debian/pizzly/ install -m0755 -d /build/reproducible-path/pizzly-0.37.3\+ds/debian/pizzly debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/pizzly-0.37.3+ds' help2man -N -n pizzly -s 1 obj-*/pizzly > debian/pizzly.1 dh_install install -m0755 -d debian/pizzly/usr/bin cp --reflink=auto -a ./obj-aarch64-linux-gnu/pizzly ./scripts/flatten_json.py ./scripts/get_fragment_length.py debian/pizzly/usr/bin/ make[1]: Leaving directory '/build/reproducible-path/pizzly-0.37.3+ds' dh_installdocs install -m0755 -d debian/pizzly/usr/share/doc/pizzly install -m0755 -d debian/pizzly/usr/share/doc/pizzly cp --reflink=auto -a ./README.md debian/pizzly/usr/share/doc/pizzly cp --reflink=auto -a ./debian/README.Debian debian/pizzly/usr/share/doc/pizzly chmod -R u\+rw,go=rX debian/pizzly/usr/share/doc install -p -m0644 debian/README.Debian debian/pizzly/usr/share/doc/pizzly/README.Debian install -p -m0644 debian/copyright debian/pizzly/usr/share/doc/pizzly/copyright dh_installchangelogs install -m0755 -d debian/pizzly/usr/share/doc/pizzly install -p -m0644 debian/.debhelper/generated/pizzly/dh_installchangelogs.dch.trimmed debian/pizzly/usr/share/doc/pizzly/changelog.Debian dh_installman install -m0755 -d debian/pizzly/usr/share/man/man1/ install -p -m0644 ./debian/pizzly.1 debian/pizzly/usr/share/man/man1/pizzly.1 man-recode --to-code UTF-8 --suffix .dh-new debian/pizzly/usr/share/man/man1/pizzly.1 mv debian/pizzly/usr/share/man/man1/pizzly.1.dh-new debian/pizzly/usr/share/man/man1/pizzly.1 chmod 0644 -- debian/pizzly/usr/share/man/man1/pizzly.1 dh_lintian install -m0755 -d debian/pizzly/usr/share/lintian/overrides install -p -m0644 debian/lintian-overrides debian/pizzly/usr/share/lintian/overrides/pizzly dh_perl dh_link install -m0755 -d debian/pizzly/usr/bin rm -f debian/pizzly/usr/bin/pizzly_flatten_json.py ln -s flatten_json.py debian/pizzly/usr/bin/pizzly_flatten_json.py dh_strip_nondeterminism dh_compress cd debian/pizzly chmod a-x usr/share/doc/pizzly/changelog.Debian usr/share/man/man1/pizzly.1 gzip -9nf usr/share/doc/pizzly/changelog.Debian usr/share/man/man1/pizzly.1 cd '/build/reproducible-path/pizzly-0.37.3+ds' dh_fixperms find debian/pizzly ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/pizzly/usr/share/doc -type f -a -true -a ! -regex 'debian/pizzly/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pizzly/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/pizzly/usr/share/man debian/pizzly/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pizzly -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pizzly/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_dwz -a dwz -- debian/pizzly/usr/bin/pizzly dh_strip -a install -m0755 -d debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/f4 objcopy --only-keep-debug --compress-debug-sections debian/pizzly/usr/bin/pizzly debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/f4/27958d47e24a0a87584cdbf8252b9f11ce2727.debug chmod 0644 -- debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/f4/27958d47e24a0a87584cdbf8252b9f11ce2727.debug strip --remove-section=.comment --remove-section=.note debian/pizzly/usr/bin/pizzly objcopy --add-gnu-debuglink debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/f4/27958d47e24a0a87584cdbf8252b9f11ce2727.debug debian/pizzly/usr/bin/pizzly install -m0755 -d debian/.debhelper/pizzly/dbgsym-root/usr/share/doc ln -s pizzly debian/.debhelper/pizzly/dbgsym-root/usr/share/doc/pizzly-dbgsym install -m0755 -d debian/.debhelper/pizzly dh_makeshlibs -a rm -f debian/pizzly/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/pizzly/DEBIAN dpkg-shlibdeps -Tdebian/pizzly.substvars debian/pizzly/usr/bin/pizzly dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb install -m0755 -d debian/pizzly/DEBIAN dh_gencontrol install -m0755 -d debian/pizzly/DEBIAN echo misc:Depends= >> debian/pizzly.substvars echo misc:Pre-Depends= >> debian/pizzly.substvars install -m0755 -d debian/.debhelper/pizzly/dbgsym-root/DEBIAN dpkg-gencontrol -ppizzly -ldebian/changelog -Tdebian/pizzly.substvars -cdebian/control -Pdebian/.debhelper/pizzly/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=pizzly-dbgsym "-DDepends=pizzly (= \${binary:Version})" "-DDescription=debug symbols for pizzly" -DBuild-Ids=f427958d47e24a0a87584cdbf8252b9f11ce2727 -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/pizzly/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppizzly -ldebian/changelog -Tdebian/pizzly.substvars -cdebian/control -Pdebian/pizzly chmod 0644 -- debian/pizzly/DEBIAN/control dh_md5sums install -m0755 -d debian/pizzly/DEBIAN cd debian/pizzly >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/pizzly/DEBIAN/md5sums install -m0755 -d debian/.debhelper/pizzly/dbgsym-root/DEBIAN cd debian/.debhelper/pizzly/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/pizzly/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/pizzly .. dpkg-deb --root-owner-group --build debian/.debhelper/pizzly/dbgsym-root .. dpkg-deb: building package 'pizzly' in '../pizzly_0.37.3+ds-10_arm64.deb'. dpkg-deb: building package 'pizzly-dbgsym' in '../pizzly-dbgsym_0.37.3+ds-10_arm64.deb'. dpkg-genbuildinfo --build=binary -O../pizzly_0.37.3+ds-10_arm64.buildinfo dpkg-genchanges --build=binary -O../pizzly_0.37.3+ds-10_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/197624 and its subdirectories I: Current time: Thu Sep 18 10:10:43 -12 2025 I: pbuilder-time-stamp: 1758233443 Thu Sep 18 22:10:44 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Thu Sep 18 22:10:44 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Thu Sep 18 22:10:44 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Thu Sep 18 22:10:44 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-7dneZ6' ==================================================================================== Thu Oct 22 04:33:45 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "2 pizzly experimental /srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM 0.37.3+ds-10" as arguments. Thu Oct 22 04:33:45 UTC 2026 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-656k2GjV" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Oct 22 04:33:45 UTC 2026 I: Downloading source for experimental/pizzly=0.37.3+ds-10 Reading package lists... NOTICE: 'pizzly' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/pizzly.git Please use: git clone https://salsa.debian.org/med-team/pizzly.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 275 kB of source archives. Get:1 http://deb.debian.org/debian experimental/main pizzly 0.37.3+ds-10 (dsc) [2026 B] Get:2 http://deb.debian.org/debian experimental/main pizzly 0.37.3+ds-10 (tar) [262 kB] Get:3 http://deb.debian.org/debian experimental/main pizzly 0.37.3+ds-10 (diff) [10.9 kB] Fetched 275 kB in 0s (15.1 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'pizzly' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/pizzly.git Please use: git clone https://salsa.debian.org/med-team/pizzly.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 275 kB of source archives. Get:1 http://deb.debian.org/debian experimental/main pizzly 0.37.3+ds-10 (dsc) [2026 B] Get:2 http://deb.debian.org/debian experimental/main pizzly 0.37.3+ds-10 (tar) [262 kB] Get:3 http://deb.debian.org/debian experimental/main pizzly 0.37.3+ds-10 (diff) [10.9 kB] Fetched 275 kB in 0s (15.1 MB/s) Download complete and in download only mode ============================================================================= Re-Building pizzly in experimental on arm64 on codethink03-arm64 now. Date: Thu Oct 22 05:33:45 BST 2026 Date UTC: Thu Oct 22 04:33:45 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM/pbuilderrc_YFZb + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' pizzly = debian-installer -o pizzly = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' pizzly = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM/pbuilderrc_YFZb --distribution experimental --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM/b2 --logfile b2/build.log pizzly_0.37.3+ds-10.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Oct 22 18:33:45 +14 2026 I: pbuilder-time-stamp: 1792643625 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pizzly_0.37.3+ds-10.dsc] I: copying [./pizzly_0.37.3+ds.orig.tar.xz] I: copying [./pizzly_0.37.3+ds-10.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./pizzly_0.37.3+ds-10.dsc: no acceptable signature found dpkg-source: info: extracting pizzly in pizzly-0.37.3+ds dpkg-source: info: unpacking pizzly_0.37.3+ds.orig.tar.xz dpkg-source: info: unpacking pizzly_0.37.3+ds-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying executable-not-elf-or-script.patch dpkg-source: info: applying 0002-Upgrade-to-SeqAn-2.5.0.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/587703/tmp/hooks/D01_modify_environment starting debug: Running on codethink03-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 22 04:34 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/587703/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/587703/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=experimental EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=75efae625ee749b7945e01a48e93ac5f LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=587703 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM/pbuilderrc_YFZb --distribution experimental --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM/b2 --logfile b2/build.log pizzly_0.37.3+ds-10.dsc' SUDO_GID=109 SUDO_HOME=/var/lib/jenkins SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/587703/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libseqan2-dev (= 2.5.0~rc3+dfsg-1), help2man, cmake, kallisto, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev (= 2.5.0~rc3+dfsg-1); however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on kallisto; however: Package kallisto is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} kallisto{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 69 newly installed, 0 to remove and 0 not upgraded. Need to get 31.5 MB of archives. After unpacking 118 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: libseqan2-dev (= 2.5.0~rc3+dfsg-1) but it is not going to be installed The following actions will resolve these dependencies: Install the following packages: 1) libseqan2-dev [2.5.0~rc3+dfsg-1 (experimental)] The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} kallisto{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan2-dev{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 70 newly installed, 0 to remove and 0 not upgraded. Need to get 32.7 MB of archives. After unpacking 132 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.7.2-1 [95.7 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-7+b1 [15.2 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-9 [62.8 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-9 [871 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41.1-3 [98.1 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-4+b1 [323 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 28 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.11.0-1 [66.7 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.10-2 [1395 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.16.0-1 [388 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-4 [73.2 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 librhash1 arm64 1.4.6-1 [131 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.51.0-2 [150 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 cmake arm64 4.1.1+really3.31.6-2 [10.1 MB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.26 [91.8 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-5 [540 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 55 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.16-2 [100 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.26 [939 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 help2man arm64 1.49.3+b1 [198 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.15.1-1 [122 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.15.1-1 [18.6 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.16.0-1 [382 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libhtscodecs2 arm64 1.6.1-2 [74.7 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libhts3t64 arm64 1.22.1+ds2-1 [434 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 kallisto arm64 0.48.0+dfsg-4+b2 [256 kB] Get: 69 http://deb.debian.org/debian experimental/main arm64 libseqan2-dev all 2.5.0~rc3+dfsg-1 [1222 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 32.7 MB in 0s (168 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.2-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.2-1) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../01-liblocale-gettext-perl_1.07-7+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../02-libproc2-0_2%3a4.0.4-9_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../03-procps_2%3a4.0.4-9_arm64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../04-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../06-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../07-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../08-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../09-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../10-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../11-bsdextrautils_2.41.1-3_arm64.deb ... Unpacking bsdextrautils (2.41.1-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../12-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../13-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../14-m4_1.4.20-1_arm64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../15-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../16-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../17-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../18-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package cmake-data. Preparing to unpack .../19-cmake-data_4.1.1+really3.31.6-2_all.deb ... Unpacking cmake-data (4.1.1+really3.31.6-2) ... Selecting previously unselected package libxml2-16:arm64. Preparing to unpack .../20-libxml2-16_2.14.5+dfsg-0.2_arm64.deb ... Unpacking libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Selecting previously unselected package libarchive13t64:arm64. Preparing to unpack .../21-libarchive13t64_3.7.4-4+b1_arm64.deb ... Unpacking libarchive13t64:arm64 (3.7.4-4+b1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../22-libbrotli1_1.1.0-2+b7_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b7) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../23-libkrb5support0_1.21.3-5_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-5) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../24-libcom-err2_1.47.2-3+b3_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2-3+b3) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../25-libk5crypto3_1.21.3-5_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../26-libkeyutils1_1.6.3-6_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../27-libkrb5-3_1.21.3-5_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../28-libgssapi-krb5-2_1.21.3-5_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-5) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../29-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libidn2-0:arm64. Preparing to unpack .../30-libidn2-0_2.3.8-4_arm64.deb ... Unpacking libidn2-0:arm64 (2.3.8-4) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../31-libsasl2-modules-db_2.1.28+dfsg1-9_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../32-libsasl2-2_2.1.28+dfsg1-9_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libldap2:arm64. Preparing to unpack .../33-libldap2_2.6.10+dfsg-1_arm64.deb ... Unpacking libldap2:arm64 (2.6.10+dfsg-1) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../34-libnghttp2-14_1.64.0-1.1+b1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.64.0-1.1+b1) ... Selecting previously unselected package libnghttp3-9:arm64. Preparing to unpack .../35-libnghttp3-9_1.11.0-1_arm64.deb ... Unpacking libnghttp3-9:arm64 (1.11.0-1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../36-libpsl5t64_0.21.2-1.1+b1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1+b1) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../37-libffi8_3.5.2-2_arm64.deb ... Unpacking libffi8:arm64 (3.5.2-2) ... Selecting previously unselected package libp11-kit0:arm64. Preparing to unpack .../38-libp11-kit0_0.25.5-3_arm64.deb ... Unpacking libp11-kit0:arm64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:arm64. Preparing to unpack .../39-libtasn1-6_4.20.0-2_arm64.deb ... Unpacking libtasn1-6:arm64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:arm64. Preparing to unpack .../40-libgnutls30t64_3.8.10-2_arm64.deb ... Unpacking libgnutls30t64:arm64 (3.8.10-2) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../41-librtmp1_2.4+20151223.gitfa8646d.1-3_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-3) ... Selecting previously unselected package libssh2-1t64:arm64. Preparing to unpack .../42-libssh2-1t64_1.11.1-1_arm64.deb ... Unpacking libssh2-1t64:arm64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:arm64. Preparing to unpack .../43-libcurl4t64_8.16.0-1_arm64.deb ... Unpacking libcurl4t64:arm64 (8.16.0-1) ... Selecting previously unselected package libjsoncpp26:arm64. Preparing to unpack .../44-libjsoncpp26_1.9.6-4_arm64.deb ... Unpacking libjsoncpp26:arm64 (1.9.6-4) ... Selecting previously unselected package librhash1:arm64. Preparing to unpack .../45-librhash1_1.4.6-1_arm64.deb ... Unpacking librhash1:arm64 (1.4.6-1) ... Selecting previously unselected package libuv1t64:arm64. Preparing to unpack .../46-libuv1t64_1.51.0-2_arm64.deb ... Unpacking libuv1t64:arm64 (1.51.0-2) ... Selecting previously unselected package cmake. Preparing to unpack .../47-cmake_4.1.1+really3.31.6-2_arm64.deb ... Unpacking cmake (4.1.1+really3.31.6-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../48-libdebhelper-perl_13.26_all.deb ... Unpacking libdebhelper-perl (13.26) ... Selecting previously unselected package libtool. Preparing to unpack .../49-libtool_2.5.4-5_all.deb ... Unpacking libtool (2.5.4-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../50-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../51-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../52-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../53-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../54-libelf1t64_0.193-3_arm64.deb ... Unpacking libelf1t64:arm64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../55-dwz_0.16-2_arm64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package gettext. Preparing to unpack .../56-gettext_0.23.1-2+b1_arm64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../57-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../58-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../59-debhelper_13.26_all.deb ... Unpacking debhelper (13.26) ... Selecting previously unselected package help2man. Preparing to unpack .../60-help2man_1.49.3+b1_arm64.deb ... Unpacking help2man (1.49.3+b1) ... Selecting previously unselected package libngtcp2-16:arm64. Preparing to unpack .../61-libngtcp2-16_1.15.1-1_arm64.deb ... Unpacking libngtcp2-16:arm64 (1.15.1-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:arm64. Preparing to unpack .../62-libngtcp2-crypto-gnutls8_1.15.1-1_arm64.deb ... Unpacking libngtcp2-crypto-gnutls8:arm64 (1.15.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:arm64. Preparing to unpack .../63-libcurl3t64-gnutls_8.16.0-1_arm64.deb ... Unpacking libcurl3t64-gnutls:arm64 (8.16.0-1) ... Selecting previously unselected package libdeflate0:arm64. Preparing to unpack .../64-libdeflate0_1.23-2_arm64.deb ... Unpacking libdeflate0:arm64 (1.23-2) ... Selecting previously unselected package libhtscodecs2:arm64. Preparing to unpack .../65-libhtscodecs2_1.6.1-2_arm64.deb ... Unpacking libhtscodecs2:arm64 (1.6.1-2) ... Selecting previously unselected package libhts3t64:arm64. Preparing to unpack .../66-libhts3t64_1.22.1+ds2-1_arm64.deb ... Unpacking libhts3t64:arm64 (1.22.1+ds2-1) ... Selecting previously unselected package kallisto. Preparing to unpack .../67-kallisto_0.48.0+dfsg-4+b2_arm64.deb ... Unpacking kallisto (0.48.0+dfsg-4+b2) ... Selecting previously unselected package libseqan2-dev. Preparing to unpack .../68-libseqan2-dev_2.5.0~rc3+dfsg-1_all.deb ... Unpacking libseqan2-dev (2.5.0~rc3+dfsg-1) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../69-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libhtscodecs2:arm64 (1.6.1-2) ... Setting up libexpat1:arm64 (2.7.2-1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libkeyutils1:arm64 (1.6.3-6) ... Setting up bsdextrautils (2.41.1-3) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libbrotli1:arm64 (1.1.0-2+b7) ... Setting up libuv1t64:arm64 (1.51.0-2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up libnghttp2-14:arm64 (1.64.0-1.1+b1) ... Setting up libdeflate0:arm64 (1.23-2) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up libcom-err2:arm64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.193-3) ... Setting up libkrb5support0:arm64 (1.21.3-5) ... Setting up libseqan2-dev (2.5.0~rc3+dfsg-1) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-9) ... Setting up autotools-dev (20240727.1) ... Setting up libjsoncpp26:arm64 (1.9.6-4) ... Setting up libproc2-0:arm64 (2:4.0.4-9) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libk5crypto3:arm64 (1.21.3-5) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-9) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:arm64 (1.11.0-1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.5.2-2) ... Setting up dwz (0.16-2) ... 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Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/587703/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for experimental I: user script /srv/workspace/pbuilder/587703/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/pizzly-0.37.3+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../pizzly_0.37.3+ds-10_source.changes dpkg-buildpackage: info: source package pizzly dpkg-buildpackage: info: source version 0.37.3+ds-10 dpkg-buildpackage: info: source distribution experimental dpkg-buildpackage: info: source changed by Enrico Seiler dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/pizzly-0.37.3+ds' dh_auto_clean rm -f debian/pizzly.1 make[1]: Leaving directory '/build/reproducible-path/pizzly-0.37.3+ds' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/pizzly.substvars debian/files rm -fr -- debian/pizzly/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:2 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The CXX compiler identification is GNU 15.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.3.1") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Configuring done (0.9s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu dh_auto_build cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/pizzly-0.37.3+ds -B/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' make -f CMakeFiles/pizzly.dir/build.make CMakeFiles/pizzly.dir/depend make[3]: Entering directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' cd /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/pizzly-0.37.3+ds /build/reproducible-path/pizzly-0.37.3+ds /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu/CMakeFiles/pizzly.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' make -f CMakeFiles/pizzly.dir/build.make CMakeFiles/pizzly.dir/build make[3]: Entering directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' [ 50%] Building CXX object CMakeFiles/pizzly.dir/main.cpp.o /usr/bin/c++ -I/build/reproducible-path/pizzly-0.37.3+ds/. -g -O2 -ffile-prefix-map=/build/reproducible-path/pizzly-0.37.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DSEQAN_HAS_ZLIB=1 -MD -MT CMakeFiles/pizzly.dir/main.cpp.o -MF CMakeFiles/pizzly.dir/main.cpp.o.d -o CMakeFiles/pizzly.dir/main.cpp.o -c /build/reproducible-path/pizzly-0.37.3+ds/main.cpp In file included from /build/reproducible-path/pizzly-0.37.3+ds/main.cpp:6: /build/reproducible-path/pizzly-0.37.3+ds/common.h: In constructor 'ProgramOptions::ProgramOptions()': /build/reproducible-path/pizzly-0.37.3+ds/common.h:18:7: warning: 'ProgramOptions::kmerScore' will be initialized after [-Wreorder] 18 | int kmerScore; | ^~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/common.h:17:7: warning: 'int ProgramOptions::insertSize' [-Wreorder] 17 | int insertSize; | ^~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/common.h:19:3: warning: when initialized here [-Wreorder] 19 | ProgramOptions() : kmerScore(2), insertSize(400), ignoreProtein(false) {} | ^~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/common.h:17:7: warning: 'ProgramOptions::insertSize' will be initialized after [-Wreorder] 17 | int insertSize; | ^~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/common.h:14:8: warning: 'bool ProgramOptions::ignoreProtein' [-Wreorder] 14 | bool ignoreProtein; | ^~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/common.h:19:3: warning: when initialized here [-Wreorder] 19 | ProgramOptions() : kmerScore(2), insertSize(400), ignoreProtein(false) {} | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/pizzly-0.37.3+ds/main.cpp:8: /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp: In member function 'bool Transcriptome::translateTrPosition(const std::string&, int, std::string&, int&, std::string&)': /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:117:10: warning: unused variable 'fw' [-Wunused-variable] 117 | bool fw = (trxmodel.strand == Strandedness::FORWARD); | ^~ /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp: In function 'void writeTranscriptome(Transcriptome&, std::ostream&)': /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:146:17: warning: unused variable 'gene_id' [-Wunused-variable] 146 | const auto &gene_id = gene.first; | ^~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:172:19: warning: unused variable 'tr_id' [-Wunused-variable] 172 | const auto &tr_id = trlist.first; | ^~~~~ /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp: In function 'void parseGTF(Transcriptome&, const std::string&, const ProgramOptions&)': /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:282:25: warning: comparison of integer expressions of different signedness: 'int' and 'seqan2::Size > >::Type' {aka 'long unsigned int'} [-Wsign-compare] 282 | for (int i = 0; i < length(record.tagNames); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:329:25: warning: comparison of integer expressions of different signedness: 'int' and 'seqan2::Size > >::Type' {aka 'long unsigned int'} [-Wsign-compare] 329 | for (int i = 0; i < length(record.tagNames); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:392:25: warning: comparison of integer expressions of different signedness: 'int' and 'seqan2::Size > >::Type' {aka 'long unsigned int'} [-Wsign-compare] 392 | for (int i = 0; i < length(record.tagNames); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/pizzly-0.37.3+ds/main.cpp:9: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:205:27: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 205 | return std::move(m); | ~~~~~~~~~^~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:205:27: note: remove 'std::move' call /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:214:21: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 214 | return std::move(m); | ~~~~~~~~~^~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:214:21: note: remove 'std::move' call /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:251:9: warning: unused variable 'matchlen' [-Wunused-variable] 251 | int matchlen = seqan2::length(krseq); | ^~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:311:19: warning: comparison of integer expressions of different signedness: 'int' and 'seqan2::Size > >::Type' {aka 'long unsigned int'} [-Wsign-compare] 311 | if (tr_stop > seqan2::length(trseq)) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:323:21: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 323 | return std::move(tlist); | ~~~~~~~~~^~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:323:21: note: remove 'std::move' call /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:709:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 709 | for (int i = 0; i < trm.exons.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:738:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 738 | for (int i = 0; i < trm.exons.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:765:11: warning: unused variable 'gap' [-Wunused-variable] 765 | int gap = d2 - d1; | ^~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:781:21: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 781 | return std::move(ret); | ~~~~~~~~~^~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:781:21: note: remove 'std::move' call /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:883:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 883 | for (int i = 0; i < v.size(); i++) { | ~~^~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:929:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 929 | for (int i = 0; i < readsInTr.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:867:17: warning: unused variable 'split_reads' [-Wunused-variable] 867 | int split_reads = spp.second; | ^~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:1033:29: warning: loop variable 'p' creates a copy from type 'const std::pair > >' [-Wrange-loop-construct] 1033 | for (const auto p : trfmap) { | ^ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:1033:29: note: use reference type to prevent copying 1033 | for (const auto p : trfmap) { | ^ | & /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:1091:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1091 | for (int i = 0; i < readsInTr.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:1115:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 1115 | for (int i = 0; i < v.size(); i++) { | ~~^~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:1112:18: warning: unused variable 'firstJsonRead' [-Wunused-variable] 1112 | bool firstJsonRead = true; | ^~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/main.cpp: In function 'int main(int, const char**)': /build/reproducible-path/pizzly-0.37.3+ds/main.cpp:126:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::unordered_map, seqan2::String > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 126 | } else if (numTxpSeqFound != trx.seqs.size()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp: In function 'Strandedness operator~(const Strandedness&)': /build/reproducible-path/pizzly-0.37.3+ds/GeneModel.hpp:18:1: warning: control reaches end of non-void function [-Wreturn-type] 18 | } | ^ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In lambda function: /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:435:15: warning: 'splitStrand' may be used uninitialized [-Wmaybe-uninitialized] 435 | if (forwardRead) { | ^~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:389:22: note: 'splitStrand' was declared here 389 | Strandedness splitStrand, safeStrand; | ^~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp: In function 'bool filterFusionRecord(const Transcriptome&, ProgramOptions&, const FusionRecord&, SplitRecord&)': /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:602:25: warning: 'st1' may be used uninitialized [-Wmaybe-uninitialized] 602 | splitrec.dir1 = st1 == Strandedness::FORWARD; // check read 1 | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:554:18: note: 'st1' was declared here 554 | Strandedness st1,st2; | ^~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:603:25: warning: 'st2' may be used uninitialized [-Wmaybe-uninitialized] 603 | splitrec.dir2 = st2 == Strandedness::FORWARD; // check read 2 | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/pizzly-0.37.3+ds/FilterFusions.hpp:554:22: note: 'st2' was declared here 554 | Strandedness st1,st2; | ^~~ [100%] Linking CXX executable pizzly /usr/bin/cmake -E cmake_link_script CMakeFiles/pizzly.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pizzly-0.37.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -DSEQAN_HAS_ZLIB=1 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/pizzly.dir/link.d CMakeFiles/pizzly.dir/main.cpp.o -o pizzly -lpthread -lz make[3]: Leaving directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' [100%] Built target pizzly make[2]: Leaving directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' dh_auto_test rm -fr -- /tmp/dh-xdg-rundir-TDqapJUy create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/pizzly.substvars rm -fr -- debian/.debhelper/generated/pizzly/ debian/pizzly/ debian/tmp/ dh_auto_install --destdir=debian/pizzly/ install -m0755 -d /build/reproducible-path/pizzly-0.37.3\+ds/debian/pizzly debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/pizzly-0.37.3+ds' help2man -N -n pizzly -s 1 obj-*/pizzly > debian/pizzly.1 dh_install install -m0755 -d debian/pizzly/usr/bin cp --reflink=auto -a ./obj-aarch64-linux-gnu/pizzly ./scripts/flatten_json.py ./scripts/get_fragment_length.py debian/pizzly/usr/bin/ make[1]: Leaving directory '/build/reproducible-path/pizzly-0.37.3+ds' dh_installdocs install -m0755 -d debian/pizzly/usr/share/doc/pizzly install -m0755 -d debian/pizzly/usr/share/doc/pizzly cp --reflink=auto -a ./README.md debian/pizzly/usr/share/doc/pizzly cp --reflink=auto -a ./debian/README.Debian debian/pizzly/usr/share/doc/pizzly chmod -R u\+rw,go=rX debian/pizzly/usr/share/doc install -p -m0644 debian/README.Debian debian/pizzly/usr/share/doc/pizzly/README.Debian install -p -m0644 debian/copyright debian/pizzly/usr/share/doc/pizzly/copyright dh_installchangelogs install -m0755 -d debian/pizzly/usr/share/doc/pizzly install -p -m0644 debian/.debhelper/generated/pizzly/dh_installchangelogs.dch.trimmed debian/pizzly/usr/share/doc/pizzly/changelog.Debian dh_installman install -m0755 -d debian/pizzly/usr/share/man/man1/ install -p -m0644 ./debian/pizzly.1 debian/pizzly/usr/share/man/man1/pizzly.1 man-recode --to-code UTF-8 --suffix .dh-new debian/pizzly/usr/share/man/man1/pizzly.1 mv debian/pizzly/usr/share/man/man1/pizzly.1.dh-new debian/pizzly/usr/share/man/man1/pizzly.1 chmod 0644 -- debian/pizzly/usr/share/man/man1/pizzly.1 dh_lintian install -m0755 -d debian/pizzly/usr/share/lintian/overrides install -p -m0644 debian/lintian-overrides debian/pizzly/usr/share/lintian/overrides/pizzly dh_perl dh_link install -m0755 -d debian/pizzly/usr/bin rm -f debian/pizzly/usr/bin/pizzly_flatten_json.py ln -s flatten_json.py debian/pizzly/usr/bin/pizzly_flatten_json.py dh_strip_nondeterminism dh_compress cd debian/pizzly chmod a-x usr/share/doc/pizzly/changelog.Debian usr/share/man/man1/pizzly.1 gzip -9nf usr/share/doc/pizzly/changelog.Debian usr/share/man/man1/pizzly.1 cd '/build/reproducible-path/pizzly-0.37.3+ds' dh_fixperms find debian/pizzly ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/pizzly/usr/share/doc -type f -a -true -a ! -regex 'debian/pizzly/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pizzly/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/pizzly/usr/share/man debian/pizzly/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pizzly -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pizzly/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_dwz -a dwz -- debian/pizzly/usr/bin/pizzly dh_strip -a install -m0755 -d debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/f4 objcopy --only-keep-debug --compress-debug-sections debian/pizzly/usr/bin/pizzly debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/f4/27958d47e24a0a87584cdbf8252b9f11ce2727.debug chmod 0644 -- debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/f4/27958d47e24a0a87584cdbf8252b9f11ce2727.debug strip --remove-section=.comment --remove-section=.note debian/pizzly/usr/bin/pizzly objcopy --add-gnu-debuglink debian/.debhelper/pizzly/dbgsym-root/usr/lib/debug/.build-id/f4/27958d47e24a0a87584cdbf8252b9f11ce2727.debug debian/pizzly/usr/bin/pizzly install -m0755 -d debian/.debhelper/pizzly/dbgsym-root/usr/share/doc ln -s pizzly debian/.debhelper/pizzly/dbgsym-root/usr/share/doc/pizzly-dbgsym install -m0755 -d debian/.debhelper/pizzly dh_makeshlibs -a rm -f debian/pizzly/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/pizzly/DEBIAN dpkg-shlibdeps -Tdebian/pizzly.substvars debian/pizzly/usr/bin/pizzly dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb install -m0755 -d debian/pizzly/DEBIAN dh_gencontrol install -m0755 -d debian/pizzly/DEBIAN echo misc:Depends= >> debian/pizzly.substvars echo misc:Pre-Depends= >> debian/pizzly.substvars install -m0755 -d debian/.debhelper/pizzly/dbgsym-root/DEBIAN dpkg-gencontrol -ppizzly -ldebian/changelog -Tdebian/pizzly.substvars -cdebian/control -Pdebian/.debhelper/pizzly/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=pizzly-dbgsym "-DDepends=pizzly (= \${binary:Version})" "-DDescription=debug symbols for pizzly" -DBuild-Ids=f427958d47e24a0a87584cdbf8252b9f11ce2727 -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/pizzly/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppizzly -ldebian/changelog -Tdebian/pizzly.substvars -cdebian/control -Pdebian/pizzly chmod 0644 -- debian/pizzly/DEBIAN/control dh_md5sums install -m0755 -d debian/pizzly/DEBIAN cd debian/pizzly >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/pizzly/DEBIAN/md5sums install -m0755 -d debian/.debhelper/pizzly/dbgsym-root/DEBIAN cd debian/.debhelper/pizzly/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/pizzly/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/pizzly .. dpkg-deb --root-owner-group --build debian/.debhelper/pizzly/dbgsym-root .. dpkg-deb: building package 'pizzly-dbgsym' in '../pizzly-dbgsym_0.37.3+ds-10_arm64.deb'. dpkg-deb: building package 'pizzly' in '../pizzly_0.37.3+ds-10_arm64.deb'. dpkg-genbuildinfo --build=binary -O../pizzly_0.37.3+ds-10_arm64.buildinfo dpkg-genchanges --build=binary -O../pizzly_0.37.3+ds-10_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/587703/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/587703/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/587703 and its subdirectories I: Current time: Thu Oct 22 18:35:39 +14 2026 I: pbuilder-time-stamp: 1792643739 + false + set +x Thu Oct 22 04:35:39 UTC 2026 I: Signing ./b2/pizzly_0.37.3+ds-10_arm64.buildinfo as pizzly_0.37.3+ds-10_arm64.buildinfo.asc Thu Oct 22 04:35:39 UTC 2026 I: Signed ./b2/pizzly_0.37.3+ds-10_arm64.buildinfo as ./b2/pizzly_0.37.3+ds-10_arm64.buildinfo.asc Thu Oct 22 04:35:39 UTC 2026 - build #2 for pizzly/experimental/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Thu Oct 22 04:35:39 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-656k2GjV, removing. /srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM: total 76 drwxrwxr-x 2 jenkins jenkins 4096 Sep 18 22:10 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 18 22:12 b2 -rw-rw-r-- 1 jenkins jenkins 2026 Nov 27 2024 pizzly_0.37.3+ds-10.dsc -rw------- 1 jenkins jenkins 60226 Sep 18 22:10 rbuildlog.VdI5emE /srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM/b1: total 4128 -rw-r--r-- 1 jenkins jenkins 56751 Sep 18 22:10 build.log -rw-r--r-- 1 jenkins jenkins 3842744 Sep 18 22:10 pizzly-dbgsym_0.37.3+ds-10_arm64.deb -rw-r--r-- 1 jenkins jenkins 10912 Sep 18 22:10 pizzly_0.37.3+ds-10.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2026 Sep 18 22:10 pizzly_0.37.3+ds-10.dsc -rw-r--r-- 1 jenkins jenkins 6234 Sep 18 22:10 pizzly_0.37.3+ds-10_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7116 Sep 18 22:10 pizzly_0.37.3+ds-10_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1507 Sep 18 22:10 pizzly_0.37.3+ds-10_arm64.changes -rw-r--r-- 1 jenkins jenkins 268684 Sep 18 22:10 pizzly_0.37.3+ds-10_arm64.deb -rw-r--r-- 1 jenkins jenkins 1368 Sep 18 22:10 pizzly_0.37.3+ds-10_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM/b2: total 4120 -rw-rw-r-- 1 jenkins jenkins 58690 Sep 18 22:12 build.log -rw-r--r-- 1 jenkins jenkins 3842744 Sep 18 22:12 pizzly-dbgsym_0.37.3+ds-10_arm64.deb -rw-r--r-- 1 jenkins jenkins 10912 Sep 18 22:12 pizzly_0.37.3+ds-10.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2026 Sep 18 22:12 pizzly_0.37.3+ds-10.dsc -rw-rw-r-- 1 jenkins jenkins 6234 Sep 18 22:12 pizzly_0.37.3+ds-10_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7116 Sep 18 22:12 pizzly_0.37.3+ds-10_arm64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1507 Sep 18 22:12 pizzly_0.37.3+ds-10_arm64.changes -rw-r--r-- 1 jenkins jenkins 268684 Sep 18 22:12 pizzly_0.37.3+ds-10_arm64.deb -rw-rw-r-- 1 jenkins jenkins 1368 Sep 18 22:12 pizzly_0.37.3+ds-10_source.changes Thu Sep 18 22:12:40 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Thu Sep 18 22:12:41 UTC 2025 I: pizzly_0.37.3+ds-10_arm64.changes: Format: 1.8 Date: Wed, 27 Nov 2024 14:53:25 +0100 Source: pizzly Binary: pizzly pizzly-dbgsym Architecture: arm64 Version: 0.37.3+ds-10 Distribution: experimental Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Enrico Seiler Description: pizzly - Identifies gene fusions in RNA sequencing data Changes: pizzly (0.37.3+ds-10) experimental; urgency=medium . * Team upload. * d/control: Experimental rebuild using the 3rd release candidate of SeqAn 2.5.0 * Added patch for the explicit seqan2 namespace. Checksums-Sha1: 403e1accb85ddf91af7486e9bb4d1c4ec0f362a8 3842744 pizzly-dbgsym_0.37.3+ds-10_arm64.deb 39e744ca7b4537115c8ab48401f1f373d9bd1699 6234 pizzly_0.37.3+ds-10_arm64.buildinfo fa3e8141cda5ca4f2a459bdc0631d136e4f5a302 268684 pizzly_0.37.3+ds-10_arm64.deb Checksums-Sha256: 59ae07d466778f92b70c3ba16f1e92d57811b15e568a928a18ea3aad136d3597 3842744 pizzly-dbgsym_0.37.3+ds-10_arm64.deb 11ace901b8480b6fc6a4d98edf136749bb64e85483e115c21b31a95a2ad1c0eb 6234 pizzly_0.37.3+ds-10_arm64.buildinfo 4165d0582b008832cee621ccfc8aaa5f1e92dfacc17829a204aee3b8e6ce9807 268684 pizzly_0.37.3+ds-10_arm64.deb Files: fc6682b8f1a42faf4b8118e29f198d77 3842744 debug optional pizzly-dbgsym_0.37.3+ds-10_arm64.deb 6d6ef3d8c0838dcba2341a447159bd15 6234 science optional pizzly_0.37.3+ds-10_arm64.buildinfo 568b68b0685f588c942c2fa467d5f695 268684 science optional pizzly_0.37.3+ds-10_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/arm64/pizzly_0.37.3+ds-10.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/arm64/pizzly_0.37.3+ds-10.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/experimental/arm64/pizzly_0.37.3+ds-10.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/experimental/arm64/pizzly_0.37.3+ds-10.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/experimental/arm64/pizzly_0.37.3+ds-10_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/arm64/pizzly_0.37.3+ds-10.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-09-18 22:10:43.772375581 +0000 +++ b2/build.log 2025-09-18 22:12:40.492524649 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Sep 18 10:09:17 -12 2025 -I: pbuilder-time-stamp: 1758233357 +I: Current time: Thu Oct 22 18:33:45 +14 2026 +I: pbuilder-time-stamp: 1792643625 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration @@ -25,53 +25,85 @@ dpkg-source: info: applying 0002-Upgrade-to-SeqAn-2.5.0.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/197624/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/587703/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 22 04:34 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/587703/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/587703/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='experimental' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=experimental + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='e63bc6a590a84d36b0bf39d4f3a11bc6' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='197624' - PS1='# ' - PS2='> ' + INVOCATION_ID=75efae625ee749b7945e01a48e93ac5f + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=587703 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM/pbuilderrc_3evf --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM/b1 --logfile b1/build.log pizzly_0.37.3+ds-10.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM/pbuilderrc_YFZb --distribution experimental --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM/b2 --logfile b2/build.log pizzly_0.37.3+ds-10.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/197624/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/587703/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -202,7 +234,7 @@ Get: 68 http://deb.debian.org/debian unstable/main arm64 kallisto arm64 0.48.0+dfsg-4+b2 [256 kB] Get: 69 http://deb.debian.org/debian experimental/main arm64 libseqan2-dev all 2.5.0~rc3+dfsg-1 [1222 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] -Fetched 32.7 MB in 0s (153 MB/s) +Fetched 32.7 MB in 0s (168 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) @@ -497,7 +529,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/pizzly-0.37.3+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pizzly_0.37.3+ds-10_source.changes +I: user script /srv/workspace/pbuilder/587703/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for experimental +I: user script /srv/workspace/pbuilder/587703/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/pizzly-0.37.3+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../pizzly_0.37.3+ds-10_source.changes dpkg-buildpackage: info: source package pizzly dpkg-buildpackage: info: source version 0.37.3+ds-10 dpkg-buildpackage: info: source distribution experimental @@ -549,7 +585,7 @@ -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE --- Configuring done (0.6s) +-- Configuring done (0.9s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -722,7 +758,7 @@ /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/pizzly-0.37.3+ds/obj-aarch64-linux-gnu' dh_auto_test - rm -fr -- /tmp/dh-xdg-rundir-r3ED942Q + rm -fr -- /tmp/dh-xdg-rundir-TDqapJUy create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/pizzly.substvars @@ -816,8 +852,8 @@ dh_builddeb dpkg-deb --root-owner-group --build debian/pizzly .. dpkg-deb --root-owner-group --build debian/.debhelper/pizzly/dbgsym-root .. -dpkg-deb: building package 'pizzly' in '../pizzly_0.37.3+ds-10_arm64.deb'. dpkg-deb: building package 'pizzly-dbgsym' in '../pizzly-dbgsym_0.37.3+ds-10_arm64.deb'. +dpkg-deb: building package 'pizzly' in '../pizzly_0.37.3+ds-10_arm64.deb'. dpkg-genbuildinfo --build=binary -O../pizzly_0.37.3+ds-10_arm64.buildinfo dpkg-genchanges --build=binary -O../pizzly_0.37.3+ds-10_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -825,12 +861,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/587703/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/587703/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/197624 and its subdirectories -I: Current time: Thu Sep 18 10:10:43 -12 2025 -I: pbuilder-time-stamp: 1758233443 +I: removing directory /srv/workspace/pbuilder/587703 and its subdirectories +I: Current time: Thu Oct 22 18:35:39 +14 2026 +I: pbuilder-time-stamp: 1792643739 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/arm64/pizzly_0.37.3+ds-10.diff: 66.8% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/arm64/pizzly_0.37.3+ds-10.diff.gz b2/build.log: 79.2% -- replaced with stdout Compressing the 1st log... b1/build.log: 79.7% -- replaced with stdout Thu Sep 18 22:12:41 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_pizzly_experimental_arm64_1758233561 + touch /var/log/reproducible-builds/diffoscope_stamp_pizzly_experimental_arm64_1758233561 + RESULT=0 + systemd-run '--description=diffoscope on pizzly/0.37.3+ds-10 in experimental/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_7-97271 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM --run-session -c jenkins-reproducible-unstable-diffoscope-fa014d55-dec0-4b5f-85f2-ac1dad030f52 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM/dbd-tmp-IgNCVt5 ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM/pizzly_0.37.3+ds-10.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM/pizzly_0.37.3+ds-10.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM/pizzly_0.37.3+ds-10.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM/b1/pizzly_0.37.3+ds-10_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM/b2/pizzly_0.37.3+ds-10_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_7-97271.service; invocation ID: 13616d5808ae4b12a5c0b85c6e4145b4 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM/pizzly_0.37.3+ds-10.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM/pizzly_0.37.3+ds-10.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM/pizzly_0.37.3+ds-10.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM/b1/pizzly_0.37.3+ds-10_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.aoovUqCM/b2/pizzly_0.37.3+ds-10_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 215ms CPU time consumed: 176ms Memory peak: 17.7M (swap: 0B) _ _ _ __ (_)_______| |_ _ | '_ \| |_ /_ / | | | | | |_) | |/ / / /| | |_| | | .__/|_/___/___|_|\__, | |_| |___/ Thu Sep 18 22:12:42 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Thu Sep 18 22:12:42 UTC 2025 I: pizzly from experimental built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-09-18 22:12:42] INFO: Starting at 2025-09-18 22:12:42.670384 [2025-09-18 22:12:42] INFO: Generating the pages of 1 package(s) [2025-09-18 22:12:42] CRITICAL: https://tests.reproducible-builds.org/debian/forky/arm64/pizzly didn't produce a buildlog, even though it has been built. [2025-09-18 22:12:42] CRITICAL: https://tests.reproducible-builds.org/debian/experimental/arm64/pizzly didn't produce a buildlog, even though it has been built. [2025-09-18 22:12:42] INFO: Finished at 2025-09-18 22:12:42.951565, took: 0:00:00.281184 Thu Sep 18 22:12:43 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/experimental/arm64/pizzly.html Thu Sep 18 22:12:43 UTC 2025 I: Removing signed pizzly_0.37.3+ds-10_arm64.buildinfo.asc files: removed './b1/pizzly_0.37.3+ds-10_arm64.buildinfo.asc' removed './b2/pizzly_0.37.3+ds-10_arm64.buildinfo.asc' 1758233563 arm64 experimental pizzly Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/arm64/pizzly_0.37.3+ds-10.rbuild.log: 77.2% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/arm64/pizzly_0.37.3+ds-10.rbuild.log.gz [2025-09-18 22:12:43] INFO: Starting at 2025-09-18 22:12:43.270972 [2025-09-18 22:12:43] INFO: Generating the pages of 1 package(s) [2025-09-18 22:12:43] CRITICAL: https://tests.reproducible-builds.org/debian/forky/arm64/pizzly didn't produce a buildlog, even though it has been built. [2025-09-18 22:12:43] INFO: Finished at 2025-09-18 22:12:43.542527, took: 0:00:00.271558 All cleanup done. Thu Sep 18 22:12:43 UTC 2025 - total duration: 0h 3m 43s. Thu Sep 18 22:12:43 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-N2dBCRcd, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 3min 44.395s CPU time consumed: 2.919s Memory peak: 50.4M (swap: 0B)