Running as unit: rb-build-arm64_8-50041.service ==================================================================================== Sat Feb 22 07:06:40 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_8) on jenkins, called using "codethink04-arm64 codethink03-arm64" as arguments. Sat Feb 22 07:06:40 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-DuYh0smE" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Feb 22 07:06:41 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Sat Feb 22 07:06:41 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-1DUY2p' Sat Feb 22 07:06:41 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Sat Feb 22 07:06:41 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-UkZ41z' ok, let's check if libssw is building anywhere yet… ok, libssw is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of libssw in unstable on arm64 on jenkins now. 1st build will be done on codethink04-arm64.debian.net. 2nd build will be done on codethink03-arm64.debian.net. ============================================================================= Sat Feb 22 07:07:03 UTC 2025 I: starting to build libssw/unstable/arm64 on jenkins on '2025-02-22 07:06' Sat Feb 22 07:07:03 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_8/50041/console.log 1740208023 arm64 unstable libssw Sat Feb 22 07:07:03 UTC 2025 I: Downloading source for unstable/libssw=1.1-15 --2025-02-22 07:07:03-- http://deb.debian.org/debian/pool/main/libs/libssw/libssw_1.1-15.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2509 (2.5K) [text/prs.lines.tag] Saving to: ‘libssw_1.1-15.dsc’ 0K .. 100% 361M=0s 2025-02-22 07:07:03 (361 MB/s) - ‘libssw_1.1-15.dsc’ saved [2509/2509] --2025-02-22 07:07:03-- http://deb.debian.org/debian/pool/main/libs/libssw/libssw_1.1-15.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2509 (2.5K) [text/prs.lines.tag] Saving to: ‘libssw_1.1-15.dsc’ 0K .. 100% 361M=0s 2025-02-22 07:07:03 (361 MB/s) - ‘libssw_1.1-15.dsc’ saved [2509/2509] Sat Feb 22 07:07:03 UTC 2025 I: libssw_1.1-15.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libssw Binary: libssw0, libssw-dev, libssw-java, ssw-align Architecture: any Version: 1.1-15 Maintainer: Debian Med Packaging Team Uploaders: Sascha Steinbiss , Michael R. Crusoe Homepage: https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/libssw Vcs-Git: https://salsa.debian.org/med-team/libssw.git Testsuite: autopkgtest Testsuite-Triggers: build-essential, default-jdk-headless, zlib1g-dev Build-Depends: debhelper (>= 12~), debhelper-compat (= 13), default-jdk-headless , javahelper , help2man, zlib1g-dev, libsimde-dev, maven-repo-helper Package-List: libssw-dev deb libdevel optional arch=any libssw-java deb java optional arch=any profile=!nojava libssw0 deb libs optional arch=any ssw-align deb science optional arch=any Checksums-Sha1: 4df851ffd023f201b3ba7794a1c8c67730e098f4 12325368 libssw_1.1.orig.tar.gz 49eca4dda657abb5c7064945f83cb18c53a95c1f 54308 libssw_1.1-15.debian.tar.xz Checksums-Sha256: cdbc20740daeb188ed39413ea5ff9ae4cf72c4d7ccff1d2de2cac0446d64d99f 12325368 libssw_1.1.orig.tar.gz b036bff04c285d5339b268bb0a0b4c9cde81f24128968b51dd0a7d0de635f140 54308 libssw_1.1-15.debian.tar.xz Files: d968cd252eaa21552725829e1da94de2 12325368 libssw_1.1.orig.tar.gz 44fb8d3c149cd1bb9fa71d9425417155 54308 libssw_1.1-15.debian.tar.xz Dgit: 4bb5873137ec6961ee756cf6bf00aebee7601e5f debian archive/debian/1.1-15 https://git.dgit.debian.org/libssw -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmaf+lgUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpdhQ//aIHLlx/1azN8PHPPmzZMX9snq1aZ fKMnSizAUnW4BERdh5YlnIhZiqA6F/pASR8LAKhmQ98yXGpfP8IUX8CUoNSmOh59 NAOxY+KXcUsvMd8pWJUF3Ax2OSPvon1urJauazPesJG4GKRuRLVi1QBA6ibNk4ro hemc69BjADV6OWUwTFItwgWGbJeEv3YYU3Jw1JU8AzvEzVZ+Mv5YfNHvdWP1Ax1n 1kLv96grONsE2DhZQIvzV3B8LT9w66bmOX4DI4axK2jUjYLdwWreAvmdy/EliuUS 6/7SXBCGegYFnVfReOEgjjWpCNjAeZ7zlC7hAcTNP25+UFZbTwiZxAo1S4jxwFBs Jc+rg7mQu3IwugHh/jUkETGkhM5pZGetOmgYJrTWWL3Njcv/v71eRSkVSbjxUS2B 2nV+4Ri4G/r3aLbnqQAkwYV7D1Uho+r1p/RS0UD7qxSiOANFgS6XizwYZy7WT8xy WCgLBgxAYtZm2BaPuJAi++Em08DnMOTTgJKs+yTUHzakMjYpHQd7qHazhN8X3L80 tFAdD0nRDseviloPhk0WaG0gC7n4URxWudJB+3l/VvQWK9Uqd4RJBbOJVO6oBXHB R49i59bprvWmj9AnW92p4LHLjOeaR/F4yKWHx+GNGSXPHgkpav/dsDAuecl4KAk6 qrVd5t0YQFOAYmc= =o+AQ -----END PGP SIGNATURE----- Sat Feb 22 07:07:03 UTC 2025 I: Checking whether the package is not for us Sat Feb 22 07:07:03 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Sat Feb 22 07:07:03 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Sat Feb 22 07:07:03 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Sat Feb 22 07:07:03 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-HUovrz' ==================================================================================== Sat Feb 22 07:07:05 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "1 libssw unstable /srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o 1.1-15" as arguments. Sat Feb 22 07:07:05 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-gzsVeRKW" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Feb 22 07:07:05 UTC 2025 I: Downloading source for unstable/libssw=1.1-15 Reading package lists... NOTICE: 'libssw' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libssw.git Please use: git clone https://salsa.debian.org/med-team/libssw.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 12.4 MB of source archives. Get:1 http://deb.debian.org/debian unstable/main libssw 1.1-15 (dsc) [2509 B] Get:2 http://deb.debian.org/debian unstable/main libssw 1.1-15 (tar) [12.3 MB] Get:3 http://deb.debian.org/debian unstable/main libssw 1.1-15 (diff) [54.3 kB] Fetched 12.4 MB in 0s (32.8 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'libssw' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libssw.git Please use: git clone https://salsa.debian.org/med-team/libssw.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 12.4 MB of source archives. Get:1 http://deb.debian.org/debian unstable/main libssw 1.1-15 (dsc) [2509 B] Get:2 http://deb.debian.org/debian unstable/main libssw 1.1-15 (tar) [12.3 MB] Get:3 http://deb.debian.org/debian unstable/main libssw 1.1-15 (diff) [54.3 kB] Fetched 12.4 MB in 0s (32.8 MB/s) Download complete and in download only mode ============================================================================= Building libssw in unstable on arm64 on codethink04-arm64 now. Date: Sat Feb 22 07:07:06 GMT 2025 Date UTC: Sat Feb 22 07:07:06 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Feb 21 19:07:06 -12 2025 I: pbuilder-time-stamp: 1740208026 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libssw_1.1-15.dsc] I: copying [./libssw_1.1.orig.tar.gz] I: copying [./libssw_1.1-15.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libssw_1.1-15.dsc: unsupported subcommand dpkg-source: info: extracting libssw in libssw-1.1 dpkg-source: info: unpacking libssw_1.1.orig.tar.gz dpkg-source: info: unpacking libssw_1.1-15.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying build_all_libs.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying rename_tool.patch dpkg-source: info: applying simde.patch dpkg-source: info: applying malloc I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/63854/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='9d98c0dd7b474df5932ad6a9bbee092a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='63854' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o/pbuilderrc_Z9UF --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o/b1 --logfile b1/build.log libssw_1.1-15.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/63854/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~), debhelper-compat (= 13), default-jdk-headless, javahelper, help2man, zlib1g-dev, libsimde-dev, maven-repo-helper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19889 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on default-jdk-headless; however: Package default-jdk-headless is not installed. pbuilder-satisfydepends-dummy depends on javahelper; however: Package javahelper is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on maven-repo-helper; however: Package maven-repo-helper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} binfmt-support{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} dctrl-tools{a} debhelper{a} default-jdk-headless{a} default-jre-headless{a} devscripts{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dirmngr{a} dwz{a} fastjar{a} file{a} gettext{a} gettext-base{a} gnupg{a} gnupg-l10n{a} gpg{a} gpg-agent{a} gpgconf{a} gpgsm{a} gpgv{a} groff-base{a} help2man{a} intltool-debian{a} jarwrapper{a} java-common{a} javahelper{a} libarchive-zip-perl{a} libassuan9{a} libb-hooks-op-check-perl{a} libclass-method-modifiers-perl{a} libclass-xsaccessor-perl{a} libclone-perl{a} libdebhelper-perl{a} libdevel-callchecker-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libexpat1{a} libffi8{a} libfile-dirlist-perl{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-touch-perl{a} libfile-which-perl{a} libgcrypt20{a} libgnutls30t64{a} libgpg-error0{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libidn2-0{a} libimport-into-perl{a} libio-html-perl{a} libio-pty-perl{a} libio-socket-ssl-perl{a} libipc-run-perl{a} libjpeg62-turbo{a} libksba8{a} liblcms2-2{a} libldap2{a} liblocale-gettext-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libmodule-runtime-perl{a} libmoo-perl{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnpth0t64{a} libnspr4{a} libnss3{a} libp11-kit0{a} libparams-classify-perl{a} libpcsclite1{a} libpipeline1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librole-tiny-perl{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libsub-quote-perl{a} libtasn1-6{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml2{a} m4{a} man-db{a} maven-repo-helper{a} media-types{a} netbase{a} openjdk-21-jdk-headless{a} openjdk-21-jre-headless{a} openssl{a} patchutils{a} perl-openssl-defaults{a} pinentry-curses{a} po-debconf{a} python3{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sopv-gpgv{a} tzdata{a} wdiff{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl debian-keyring dput dput-ng dupload equivs gnupg-utils gpg-wks-client libarchive-cpio-perl libasound2t64 libcups2t64 libdata-dump-perl libdistro-info-perl libfontconfig1 libfreetype6 libgit-wrapper-perl libgitlab-api-v4-perl libgpg-error-l10n libharfbuzz0b libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libio-compress-brotli-perl libjson-perl libldap-common liblist-compare-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libnamespace-clean-perl liboss4-salsa-asound2 libsasl2-modules libsoap-lite-perl libstring-shellquote-perl libxstring-perl licensecheck lintian lynx lzip pristine-tar python3-apt python3-argcomplete python3-debian python3-magic python3-requests python3-unidiff python3-xdg strace unzip wget 0 packages upgraded, 131 newly installed, 0 to remove and 0 not upgraded. Need to get 163 MB of archives. After unpacking 459 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 binfmt-support arm64 2.2.2-7+b1 [68.2 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-7+b1 [15.2 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.2-1 [853 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.2-1 [1997 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.1-2 [27.0 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 media-types all 11.0.0 [27.6 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025a-2 [259 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.2-1 [1914 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.2-1 [745 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.1-2 [9952 B] Get: 17 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.1-2 [28.0 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.4.1-1 [1390 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20241223 [164 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-4 [92.1 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-3 [862 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 ca-certificates-java all 20240118 [11.6 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 dctrl-tools arm64 2.24-3+b1 [125 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-3 [539 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 42 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 java-common all 0.76 [6776 B] Get: 52 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libnspr4 arm64 2:4.36-1 [102 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libnss3 arm64 2:3.108-1 [1293 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libpcsclite1 arm64 2.3.1-1 [55.3 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 openjdk-21-jre-headless arm64 21.0.6+7-1 [40.6 MB] Get: 58 http://deb.debian.org/debian unstable/main arm64 default-jre-headless arm64 2:1.21-76 [3192 B] Get: 59 http://deb.debian.org/debian unstable/main arm64 openjdk-21-jdk-headless arm64 21.0.6+7-1 [81.9 MB] Get: 60 http://deb.debian.org/debian unstable/main arm64 default-jdk-headless arm64 2:1.21-76 [1124 B] Get: 61 http://deb.debian.org/debian unstable/main arm64 libgpg-error0 arm64 1.51-3 [78.5 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libassuan9 arm64 3.0.1-2 [58.1 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libgcrypt20 arm64 1.11.0-7 [742 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 gpgconf arm64 2.2.46-1+b1 [115 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libksba8 arm64 1.6.7-2+b1 [125 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 libnpth0t64 arm64 1.8-2 [22.8 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 dirmngr arm64 2.2.46-1+b1 [344 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 gnupg-l10n all 2.2.46-1 [702 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 gpg arm64 2.2.46-1+b1 [481 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 pinentry-curses arm64 1.3.1-2 [83.5 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 gpg-agent arm64 2.2.46-1+b1 [231 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 gpgsm arm64 2.2.46-1+b1 [232 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 gnupg all 2.2.46-1 [376 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 gpgv arm64 2.2.46-1+b1 [200 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 sopv-gpgv all 0.1.1-1 [10.7 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 libfile-dirlist-perl all 0.05-3 [7600 B] Get: 84 http://deb.debian.org/debian unstable/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libfile-touch-perl all 0.12-2 [8816 B] Get: 87 http://deb.debian.org/debian unstable/main arm64 libio-pty-perl arm64 1:1.20-1+b2 [34.0 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libipc-run-perl all 20231003.0-2 [101 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libclass-xsaccessor-perl arm64 1.19-4+b5 [34.9 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b2 [10.6 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libdevel-callchecker-perl arm64 0.009-1+b1 [16.3 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libparams-classify-perl arm64 0.015-2+b4 [22.3 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 libimport-into-perl all 1.002005-2 [11.3 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libmoo-perl all 2.005005-1 [58.0 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 liburi-perl all 5.30-1 [105 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libhtml-parser-perl arm64 3.83-1+b2 [97.5 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B] Get: 115 http://deb.debian.org/debian unstable/main arm64 libnet-ssleay-perl arm64 1.94-3 [323 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 libnet-http-perl all 6.23-1 [23.9 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 libwww-perl all 6.77-1 [183 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 patchutils arm64 0.4.2-1+b1 [71.3 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 wdiff arm64 1.2.2-7 [121 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 devscripts all 2.25.3 [1058 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 fastjar arm64 2:0.98-7+b1 [74.9 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 help2man arm64 1.49.3+b1 [198 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 jarwrapper all 0.80 [9692 B] Get: 128 http://deb.debian.org/debian unstable/main arm64 javahelper all 0.80 [80.4 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 libsimde-dev all 0.8.2-2 [467 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 maven-repo-helper all 1.11 [142 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 163 MB in 1s (278 MB/s) Preconfiguring packages ... Selecting previously unselected package libpipeline1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19889 files and directories currently installed.) Preparing to unpack .../0-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package binfmt-support. Preparing to unpack .../1-binfmt-support_2.2.2-7+b1_arm64.deb ... Unpacking binfmt-support (2.2.2-7+b1) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../2-liblocale-gettext-perl_1.07-7+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../3-libpython3.13-minimal_3.13.2-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.2-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../4-libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../5-python3.13-minimal_3.13.2-1_arm64.deb ... Unpacking python3.13-minimal (3.13.2-1) ... Setting up libpython3.13-minimal:arm64 (3.13.2-1) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.13-minimal (3.13.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20262 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.1-2_arm64.deb ... Unpacking python3-minimal (3.13.1-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_11.0.0_all.deb ... Unpacking media-types (11.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025a-2_all.deb ... Unpacking tzdata (2025a-2) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.4.7-1_arm64.deb ... Unpacking libffi8:arm64 (3.4.7-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.2-6_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_arm64.deb ... Unpacking python3.13 (3.13.2-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.13.1-2_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.13.1-2) ... Setting up python3-minimal (3.13.1-2) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21272 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.1-2_arm64.deb ... Unpacking python3 (3.13.1-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.4.1-1_arm64.deb ... Unpacking openssl (3.4.1-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20241223_all.deb ... Unpacking ca-certificates (20241223) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../008-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40.4-4_arm64.deb ... Unpacking bsdextrautils (2.40.4-4) ... Selecting previously unselected package man-db. Preparing to unpack .../011-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../012-m4_1.4.19-5_arm64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../013-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... 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Preparing to unpack .../020-libtool_2.5.4-3_all.deb ... Unpacking libtool (2.5.4-3) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../021-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../022-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../023-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../024-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../025-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../026-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../027-libunistring5_1.3-1_arm64.deb ... Unpacking libunistring5:arm64 (1.3-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../028-libicu72_72.1-6_arm64.deb ... Unpacking libicu72:arm64 (72.1-6) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../029-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../030-gettext_0.23.1-1_arm64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../031-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../032-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../033-debhelper_13.24.1_all.deb ... Unpacking debhelper (13.24.1) ... Selecting previously unselected package java-common. Preparing to unpack .../034-java-common_0.76_all.deb ... Unpacking java-common (0.76) ... Selecting previously unselected package liblcms2-2:arm64. Preparing to unpack .../035-liblcms2-2_2.16-2_arm64.deb ... Unpacking liblcms2-2:arm64 (2.16-2) ... Selecting previously unselected package libjpeg62-turbo:arm64. Preparing to unpack .../036-libjpeg62-turbo_1%3a2.1.5-3+b1_arm64.deb ... Unpacking libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Selecting previously unselected package libnspr4:arm64. Preparing to unpack .../037-libnspr4_2%3a4.36-1_arm64.deb ... Unpacking libnspr4:arm64 (2:4.36-1) ... Selecting previously unselected package libnss3:arm64. 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Preparing to unpack .../113-maven-repo-helper_1.11_all.deb ... Unpacking maven-repo-helper (1.11) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../114-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up media-types (11.0.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up fastjar (2:0.98-7+b1) ... Setting up libsimde-dev (0.8.2-2) ... Setting up liblcms2-2:arm64 (2.16-2) ... Setting up wdiff (1.2.2-7) ... Setting up libfile-which-perl (1.27-2) ... Setting up libnpth0t64:arm64 (1.8-2) ... Setting up libicu72:arm64 (72.1-6) ... Setting up bsdextrautils (2.40.4-4) ... Setting up libgpg-error0:arm64 (1.51-3) ... Setting up java-common (0.76) ... Setting up libdynaloader-functions-perl (0.004-1) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up libio-pty-perl (1:1.20-1+b2) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libclone-perl:arm64 (0.47-1+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up perl-openssl-defaults:arm64 (7+b2) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libgcrypt20:arm64 (1.11.0-7) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8+b1) ... Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Feb 22 07:07:29 UTC 2025. Universal Time is now: Sat Feb 22 07:07:29 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Setting up libnspr4:arm64 (2:4.36-1) ... Setting up gnupg-l10n (2.2.46-1) ... Setting up libunistring5:arm64 (1.3-1) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.23.1-1) ... Setting up binfmt-support (2.2.2-7+b1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libb-hooks-op-check-perl:arm64 (0.22-3+b2) ... Setting up libipc-run-perl (20231003.0-2) ... Setting up libpcsclite1:arm64 (2.3.1-1) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8+b1) ... Setting up autoconf (2.72-3) ... Setting up libtimedate-perl (2.3300-2) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up gpgv (2.2.46-1+b1) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libassuan9:arm64 (3.0.1-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up netbase (6.4) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b5) ... Setting up libfile-dirlist-perl (0.05-3) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up openssl (3.4.1-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libldap2:arm64 (2.6.9+dfsg-1) ... Setting up liburi-perl (5.30-1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up libfile-touch-perl (0.12-2) ... Setting up dctrl-tools (2.24-3+b1) ... Setting up libnet-ssleay-perl:arm64 (1.94-3) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libksba8:arm64 (1.6.7-2+b1) ... Setting up pinentry-curses (1.3.1-2) ... Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.23.1-1) ... Setting up libfile-listing-perl (6.16-1) ... Setting up jarwrapper (0.80) ... Setting up libtool (2.5.4-3) ... Setting up libnet-http-perl (6.23-1) ... Setting up libidn2-0:arm64 (2.3.7-2+b1) ... Setting up libnss3:arm64 (2:3.108-1) ... Setting up libdevel-callchecker-perl:arm64 (0.009-1+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3+b1) ... Setting up dh-autoreconf (20) ... Setting up patchutils (0.4.2-1+b1) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-7) ... Setting up libhtml-parser-perl:arm64 (3.83-1+b2) ... Setting up gpgconf (2.2.46-1+b1) ... Setting up ca-certificates-java (20240118) ... No JRE found. Skipping Java certificates setup. Setting up libpython3.13-stdlib:arm64 (3.13.2-1) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up gpg (2.2.46-1+b1) ... Setting up libpython3-stdlib:arm64 (3.13.1-2) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libgnutls30t64:arm64 (3.8.9-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up gpg-agent (2.2.46-1+b1) ... Setting up openjdk-21-jre-headless:arm64 (21.0.6+7-1) ... update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libhttp-cookies-perl (6.11-1) ... Setting up python3.13 (3.13.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:arm64 (0.015-2+b4) ... Setting up gpgsm (2.2.46-1+b1) ... Setting up python3 (3.13.1-2) ... Setting up sopv-gpgv (0.1.1-1) ... update-alternatives: using /usr/bin/sopv-gpgv to provide /usr/bin/sopv (sopv) in auto mode Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up dirmngr (2.2.46-1+b1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up gnupg (2.2.46-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up debhelper (13.24.1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.77-1) ... Setting up devscripts (2.25.3) ... Setting up javahelper (0.80) ... Processing triggers for libc-bin (2.40-7) ... Processing triggers for ca-certificates-java (20240118) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:BJCA_Global_Root_CA1.pem Adding debian:BJCA_Global_Root_CA2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:CommScope_Public_Trust_ECC_Root-01.pem Adding debian:CommScope_Public_Trust_ECC_Root-02.pem Adding debian:CommScope_Public_Trust_RSA_Root-01.pem Adding debian:CommScope_Public_Trust_RSA_Root-02.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureSign_Root_CA12.pem Adding debian:SecureSign_Root_CA14.pem Adding debian:SecureSign_Root_CA15.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_CYBER_Root_CA.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustAsia_Global_Root_CA_G3.pem Adding debian:TrustAsia_Global_Root_CA_G4.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up openjdk-21-jdk-headless:arm64 (21.0.6+7-1) ... update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jwebserver to provide /usr/bin/jwebserver (jwebserver) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up default-jre-headless (2:1.21-76) ... Setting up maven-repo-helper (1.11) ... Setting up default-jdk-headless (2:1.21-76) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20240118) ... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libssw-1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libssw_1.1-15_source.changes dpkg-buildpackage: info: source package libssw dpkg-buildpackage: info: source version 1.1-15 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with javahelper --with jh_maven_repo_helper debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/libssw-1.1' rm -f debian/libssw*install debian/libssw*links debian/ssw-align.1 dh_auto_clean --sourcedirectory src cd src && make -j12 clean make[2]: Entering directory '/build/reproducible-path/libssw-1.1/src' rm -f ssw.o ssw_cpp.o ssw-align libssw.so.0 example_c example_cpp libsswjni.so *.jar ssw/Aligner.class ssw/Alignment.class *~ libssw.a make[2]: Leaving directory '/build/reproducible-path/libssw-1.1/src' make[1]: Leaving directory '/build/reproducible-path/libssw-1.1' jh_clean Duplicate specification "u=s" for option "u" dh_clean debian/rules binary dh binary --with javahelper --with jh_maven_repo_helper dh_update_autotools_config dh_autoreconf jh_linkjars debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/libssw-1.1' dh_auto_build --sourcedirectory src -- default java cd src && make -j12 "INSTALL=install --strip-program=true" default java make[2]: Entering directory '/build/reproducible-path/libssw-1.1/src' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libssw-1.1=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -shared -rdynamic -Wl,-soname,libssw.so.0 -o libssw.so.0 ssw.c ssw.h ssw_cpp.h ssw_cpp.cpp -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now cc -c -o ssw.o ssw.c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libssw-1.1=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 g++ -c -o ssw_cpp.o ssw_cpp.cpp -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libssw-1.1=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 javac ssw/Aligner.java javac ssw/Alignment.java cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libssw-1.1=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -I"/include" -I"/include/linux" -I/usr/lib/jvm/default-java/include/ -I/usr/lib/jvm/default-java/include/linux -fPIC -shared -rdynamic -o libsswjni.so sswjni.c ssw.c -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now jar cvf ssw.jar ssw/Aligner.class ssw/Alignment.class added manifest adding: ssw/Aligner.class(in = 2486) (out= 1527)(deflated 38%) adding: ssw/Alignment.class(in = 1029) (out= 602)(deflated 41%) ar rcs libssw.a ssw.o ssw_cpp.o cc -o example_c ssw.o example.c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libssw-1.1=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now g++ -o example_cpp example.cpp ssw.o ssw_cpp.o -g -O2 -ffile-prefix-map=/build/reproducible-path/libssw-1.1=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libssw-1.1=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -o ssw-align main.c kseq.h -L. -lssw -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/libssw-1.1/src' make[1]: Leaving directory '/build/reproducible-path/libssw-1.1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libssw-1.1' LD_PRELOAD="$LD_PRELOAD /build/reproducible-path/libssw-1.1/src/libssw.so" src/ssw-align -c demo/ref.fa demo/1k.fa ERROR: ld.so: object '/build/reproducible-path/libssw-1.1/src/libssw.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. target_name: chr1 query_name: chr1 optimal_alignment_score: 2002 suboptimal_alignment_score: 1000 strand: + target_begin: 1 target_end: 1001 query_begin: 1 query_end: 1001 Target: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 Target: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 Target: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 Target: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 Target: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 Target: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 Target: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 Target: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 Target: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 Target: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 Target: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 Target: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 Target: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 Target: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 Target: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 Target: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 Target: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 ||||||||||||||||||||||||||||||||||||||||| Query: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 target_name: chr2 query_name: chr1 optimal_alignment_score: 312 suboptimal_alignment_score: 311 strand: + target_begin: 4437430 target_end: 4438470 query_begin: 9 query_end: 971 Target: 4437430 TTGAT-TCCACAGATTCCAATAGAATAGTTTGAAGATGGAACAATTGAGAATTCTGAATG 4437488 ||*|| *|||| || | |||| ||||*|**||| |**||*|*| ||**||| ||| Query: 9 TTAATCGCCAC-GA--C--ATAG--TAGTATTTAGA-GTTACTAGT---AAGCCTG-ATG 56 Target: 4437489 ---CTAAGCTAAT--TAGATATGTTTTCTTTGAAGGAAAACTACATTGTATTATTTTGCC 4437543 |||**| ||| |||*| | ||*||||| |||| | *|||||*|*|||**| Query: 57 CCACTACAC-AATTCTAGCT-T-TTCTCTTT--AGGA----T-GATTGTTTCATTCAG-- 104 Target: 4437544 TCCTCCCTCCTCCTAGAAGCCTT----TAAAATTCATGCATCATTTTAAAAGTTTTGAAA 4437599 ||*|**|| ||**|||||**|*| *|||||| || *|*||**||||| ||| || Query: 105 TCTTATCT-CTTTTAGAAAACATAGGAAAAAATT-AT--TTAATAATAAAA-TTT--AA- 156 Target: 4437600 TTTTTCAAGATTATGTTTAA-GTAT--ATTA-AATATTTTGTTCAGTCATCCCAATTAGT 4437655 ||**||| | ||| || |||| *||| ||*| *|||| |*||*||| || Query: 157 -TTGGCAA-A--ATG---AAGGTATGGCTTATAAGA--GTGTT------TTCCTATT-GT 200 Target: 4437656 TTTCAATG--G----CCCT-TTCCATTTAAAGAGTTTGGACATTCCATATAAAAAAG-AC 4437707 |||||*|| | |*|| ||| ||||*|**|*||||| *||| |**|****| |* Query: 201 TTTCAGTGTAGGACTCACTGTTC----TAAATAACTGGGACA-CCCA-AGGATTCTGTAA 254 Target: 4437708 AATGTCATCTACA-TTTTC-TTTGTTTT--CT---T---AATT-AT----ATCTTTTCCT 4437752 ||||*|||| || ||*|| |||*|*|| || | |||| || ||*|*|||*| Query: 255 AATGCCATC--CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCACATGTATTCAT 312 Target: 4437753 TTTTACAAATTTCTTAA-AAA-TAG-GTGTAAGATCTCTGATTTAACCTATGTGCGT--- 4437806 ||| |||||*|| ||| ||| *||| |||**|||| *||||**|*|| ||*| Query: 313 TTT------TTTCTAAACAAATTAGCATGT-AGAATTCTG-GTTAAAATTTG-GCATAGA 363 Target: 4437807 -C------TTAATTTTTCA----GCTTC---T--CTGTCATT---TTATT-AGATGTTTT 4437846 | *||*||||||| ||**| | |||||||| |*||| ||| Query: 364 ACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGA------ 417 Target: 4437847 TATTGT-TTTTAA------TTACTAAATTAATCTTAATCTATG-CTTATTATATCATTCT 4437898 ||*|| *||||| *||*||||*|*|| **||*|*||| |**|**|*|||**||| Query: 418 -ATGGTGATTTAACAAAGGATAATAAAGTTAT-GAAACCAATGCCACAAAACATCTGTCT 475 Target: 4437899 CCATTAC--GT-TATGGATACAACAACT-TG-GTGAATGTTTCTG----AGATTAACACT 4437949 | |*|| || |*||**| *| || |||**|||*|*|| |||***|*|** Query: 476 C--TAACTGGTGTGTGTGT-------GTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGA 526 Target: 4437950 AAAAATATTTAACAATCTCTCTCATTTTTATC----TTTTC-TTTCTTTTTCTCTTTGTC 4438004 *|*||*|||| ||*||*||| |||***|*|| |*||| |||||||||| |||| *| Query: 527 GAGAAAATTT--CACTCCCTC-CATAAATCTCACAGTATTCTTTTCTTTTTC-CTTT-CC 581 Target: 4438005 TTT-CTCACTCTCTATTTATCCTGTTACATCTTTGCTTCTATCTCTTTCTCTGTTTTTTT 4438063 ||| ||**|||| |*|||*| ||**|| |||||| || ||||| *|||**|| Query: 582 TTTCCTTGCTCT-TCTTTCT-CTCCTA-----TTGCTT---TC-CTTTC---ATTTCCTT 627 Target: 4438064 TTTTTAATATTTAAATAATGCTTCTGTCTGAGGAGGTTAAGAAGTGAAAGAAGACATTGT 4438123 *|**|||*|***|||||| |**|*| || || || | ||*||*|*|| Query: 628 CTCATAAAAGAAAAATAA-----CAATAT-AG------AA-AA-T--AACAAAATAT--- 668 Target: 4438124 GAGATGGAGAATCTTTATTAAGATAGAAG---AC--AAAGAGGGGATGAT-----GTGGA 4438173 ||||||**||*|||| ||||*|| *||| || ||| |*|**||*|| |||| Query: 669 -AGATGGTCAACCTTT-TTAATAT-TAAGGTTACCTAAA-ATGCCATTATCCAAAGTGG- 723 Target: 4438174 CACTT-TC-AG-GATG-TGGAATGGT---TACATACATTATT---CTGT-TA-TCACAAG 4438221 || || || |||| || || || |||*|||| |||| |*|| || ||| || Query: 724 ---TTCTCTAGAGATGCTG--AT-GTATATACTTACA-TATTTTACAGTGTATTCA-AA- 774 Target: 4438222 GTTAGCTAA-ACTCTCTTTCATAA-A-ATCTCTCTTGTTTCTTACTCCCTAAATCTCAAA 4438278 || || |*|*|*||*||||| | ||*|| || |||*|*|| | || || Query: 775 --TA---AAGAGTATATTACATAAGACATATC-CT--TTTGTAAC-C---AA--CT---- 816 Target: 4438279 TAAGTGACTAAAAAATGCCTGGA--TGACCCCAAACAGTAAGAATAGCTTGTA-GGTCTC 4438335 |**||*|*|||*||*|**||||| ||*|**||||| *|| ||| | |||| *||||* Query: 817 TTTGTCATTAACAATTTACTGGACTTGTCAACAAAC-CTA--AAT--C-TGTATCGTCTA 870 Target: 4438336 TGAAG---ATGTTATCTTTTGCCCTGGGAAGGTGGATTCCTATACTAACACCTGCACTTG 4438392 |*|*| |*|| ||*||| |||*| ||*|| || ||*|*||*||| || Query: 871 TAATGGCTACGT--TCATTT----TGGTA---TGAAT--CT-TAATTACCCCT----TT- 913 Target: 4438393 AAAAGGTGAACAAGATAATTTTGTATTTATTTTCTCACTA--CCACTGCAGGTAGCATGG 4438450 *|| | ||*||| ||*|*||||||||| || *|||| | *|| *||| Query: 914 -----CTG--C---ATTATT---TAATGATTTTCTCA-TATGTCACT-C--TTA-AATG- 954 Target: 4438451 GACACTTCTTTATTATTCAC 4438470 *||||| |*|||*||||| Query: 955 --TACTTC-TAATTTTTCAC 971 target_name: chr3 query_name: chr1 optimal_alignment_score: 291 suboptimal_alignment_score: 289 strand: + target_begin: 680970 target_end: 682002 query_begin: 9 query_end: 998 Target: 680970 TTAAATTGTCA--ACATGGTA-TATATGAAATGAATTGGGTTTATAATAGTAAACCAATC 681026 || |||*|*|| ||||*||| ||| |*| || || ||*||||||*|| |* Query: 9 TT-AATCGCCACGACATAGTAGTAT-TTA---GA-----GT---TACTAGTAAGCC--TG 53 Target: 681027 TTG-CATTCCTAAAA---TA--AATCCTATTTAG--TTATCGT--------GTGTTATTT 681070 *|| ||*|*| |*|| || **|*||*||||| |*||*|| ||*||| |* Query: 54 ATGCCACTAC-ACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTA-TC 111 Target: 681071 TCTT----AATACAGTGTTGGATTAAGTTTGCTATTTTTTATTTTAAAATTTTACATTAT 681126 |||| ||*||| |*|||**||*| || |||*||**||||| |||| || Query: 112 TCTTTTAGAAAACA---TAGGAAAAAAT----TA--TTTAATAATAAAA-TTTA----AT 157 Target: 681127 TTTCTTCAGTGA---TATTGACCTGT---AGTTTTCTTTCATTATACTGTTTTATCAGAT 681180 |**| **|*||| || ||*|*|*| |||*| |||| *||| ||||| |||| | Query: 158 TGGC-AAAATGAAGGTA-TGGCTTATAAGAGTGT--TTTC-CTAT--TGTTT--TCAG-T 207 Target: 681181 TTAGGTATCAGTGTTAT-AGTTTCT---TCATGAAAGGAAT---TAAGATGTTTTCCTTC 681233 *||||**|||*||||*| |*|**|| *||***|||||*| |||*||| ||*|| Query: 208 GTAGGACTCACTGTTCTAAATAACTGGGACACCCAAGGATTCTGTAAAATG----CCATC 263 Target: 681234 C-CTT-TCA---ATGTT------CTGAATAATCATACAGCAT-TA-TGACTATCTGCCAT 681280 | *|| ||| ||*|| ||*||*|*||||*|| ||| || |*|*|*|*| | Query: 264 CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCA-CATGTATTCATTTTTT----T 318 Target: 681281 TTAAATC--TTTAGAAT----AATTACCTTGTGAAACTATGTGGGCTTGGTGCTATTTTG 681334 *|||| | *||||*|| |||| ||*||*||| || |*|||*|*|**| | ***| Query: 319 CTAAA-CAAATTAGCATGTAGAATT--CTGGTTAAA--AT-TTGGCATAGAAC-A-CCCG 370 Target: 681335 TGTAGTATTTATC-TAATTGTTTCCTATA--TTTC-TT--CTA--TGAAATTGGTTGATT 681386 *||| | |||*|| ||| ||***||*||| |*|| || ||| |||*|*||| ||||| Query: 371 GGTA-T-TTTTTCATAA-TGCACCCAATAACTGTCATTCACTAATTGAGAATGG-TGATT 426 Target: 681387 TAATCTTTCTAACACTAATAAGATTAATTTGAGTAAACTTCATTTCTCTAGAAAATAATT 681446 ||| |*||***||||||**||| || |||| ||*|*| | |*||||*| | Query: 427 TAA-----CAAAGGATAATAAAGTTA---TG---AAAC--CAATGC-C-ACAAAACA--T 469 Target: 681447 AATTCATCAAATTAAATCAAATTTGAAATTTGATTTCAAATTTATTTGTGTCAAAGTAA- 681505 ***|| || |||*|****|*|| |*|| |*| *|*|*|*|||||****|||| Query: 470 CTGTC-TC----TAACTGGTGTGTG---TGTG-TGT---GTGTGTGTGTGTGTGTGTAAG 517 Target: 681506 A-GGAG-G--------TTTC-CT--GT-CATTTTAAAATTCTC----TGTTGTTTTAATA 681547 | |||| | |||| || *| || |||| |||| |*||*|||| *|* Query: 518 AGGGAGAGAGAGAAAATTTCACTCCCTCCA---TAAA--TCTCACAGTATTCTTTT-CTT 571 Target: 681548 GTAACTT--GTTT-CTTATTATTTATAACTTTAT---ATATT--TGTACTT---TTTCCT 681596 *|**||| *||| |||**|*|| ||||*| *|||| |*|*||| ||||| Query: 572 TTTCCTTTCCTTTCCTTGCTCTT-----CTTTCTCTCCTATTGCTTTCCTTTCATTTCC- 625 Target: 681597 TTTTTATCAAATG--AACT--GAGTTT------TAAC-----ATCGCAT--TTAA---TT 681636 ||*|*|| |||*| ||*| *|*|*| |||| ||*| || |*|| || Query: 626 TTCTCAT-AAAAGAAAAATAACAATATAGAAAATAACAAAATATAG-ATGGTCAACCTTT 683 Target: 681637 TTAATTATCTAATCTAAATCTAAAAGCTGATATTTGATTCAA-----TTGTC-AGAAATC 681690 |||| ||| |||**| *|*|||||| ||**||| ||*||| ||*|| |||*|| Query: 684 TTAA-TAT-TAAGGT-TACCTAAAA--TGCCATT--ATCCAAAGTGGTTCTCTAGAGAT- 735 Target: 681691 TCTTAAGTATATTGGGATCAACTTGGAAAAGTAAATTGACTTTAAACAGTACACTT--TA 681748 *||*|*|||||| |||| |*| | ||| || |||||**| || *| Query: 736 GCTGATGTATAT--------ACTT--ACA--T--ATT---TT---ACAGTGTA-TTCAAA 774 Target: 681749 TGAACTTTAAATTACAGATCAGATAT--TTTTAGTAA--AA-TTTTATCCAAACTAAGAT 681803 |*||***||*||||||*|**|*|||| |||| |||| || ||||*|| |*||| Query: 775 TAAAGAGTATATTACATAAGACATATCCTTTT-GTAACCAACTTTTGTC---ATTAA--- 827 Target: 681804 GCAATATGAGTATAATCACTGATTCAA-AAAGCTTCCTTTAGTGAGCATGAAATATC-TC 681861 |||| |*|*|**|*| || |||| ||| || || *|*| || |||| | Query: 828 -CAAT-TTACTGGACT---TG--TCAACAAA----CC--TA--AATC-TG---TATCGT- 867 Target: 681862 ACTATTTTAAT---T---TTAATATTGATTGTGTGTTAAAATAATAATAATTGCATTAT- 681914 ||| |||| | ||*||*||| ||*|| |||**||||*|***|*||*| Query: 868 -CTA---TAATGGCTACGTTCATTTTG---GTATG----AATCTTAATTACCCCTTTCTG 916 Target: 681915 -ATTATTGATAATGTGTATTCTTGTCATGTTTCCATTCTTACTGGAAATG--CCTCCAGT 681971 |||||| ||||| ||| ||*||||*|*| ||*|||| ||||| |*||*|*| Query: 917 CATTATT--TAATG---ATT-TTCTCATATGT-CACTCTT-----AAATGTACTTCTAAT 964 Target: 681972 GTTTC----TCCATCAAATAGTAT-ACTGGCTCTAA 682002 *|||| |*|||||*||| || |*|||*||*|| Query: 965 TTTTCACTTTACATCACATA--ATGAATGGATCCAA 998 target_name: chr4 query_name: chr1 optimal_alignment_score: 280 suboptimal_alignment_score: 273 strand: + target_begin: 47000 target_end: 48059 query_begin: 2 query_end: 1001 Target: 47000 AAACATCTT-ATAGCTACTGGATTCTTTTTTGCCTATGTATTTA----TA-TATGT--G- 47050 |||||**|| ||*||*|| || | *|*| || ||||||| || || || | Query: 2 AAACAGGTTAATCGCCAC--GA--C---ATAG--TA-GTATTTAGAGTTACTA-GTAAGC 50 Target: 47051 CTGTAT----CTATGTAATGTCTA--TTTTTATAAAGCTCTAATTGACCTAGAGGAAAAT 47104 ||| || |||***||| |||| |||| |||| || ||| || Query: 51 CTG-ATGCCACTACACAAT-TCTAGCTTTT-------CTCT--TT-------AGG---AT 89 Target: 47105 GA--GTTT--TTGAATCAAATAT-TTTTTGAAGGGAAAGTAAAAACTGTGGTACATTGAA 47159 || |||| ||*|*||**||*| ||||*|||***|*||*||||| ||| | Query: 90 GATTGTTTCATTCAGTCTTATCTCTTTTAGAAAACATAGGAAAAA---------ATT-A- 138 Target: 47160 GTTCACATGACTAATCATTGAGAAATAAAAACAGACTTAGCAATTATTGGTAAAAAGCAG 47219 || |||| ||||||| || |*|||||*||||*|*|| Query: 139 -TT--------TAAT--------AATAAAA------TT-----TAATTGGCAAAATGAAG 170 Target: 47220 --ATG--TTAAAA-----TATAC--ATTTTTGTTCAGGGTTAAAGGA-T---TGTTCTGA 47264 ||| |||*|| |*|*| |||*|| |||||*|| |||| | ||||||*| Query: 171 GTATGGCTTATAAGAGTGTTTTCCTATTGTT-TTCAGTGT---AGGACTCACTGTTCTAA 226 Target: 47265 ATTA----GATA---A--GATAAAGCTAAAAGTTTAAACAAGTTATAA---AAAGTTTCT 47312 ||*| ||*| | |||***| ||||| |***|*|*||||||*| |*|*|**|| Query: 227 ATAACTGGGACACCCAAGGATTCTG-TAAAA-TGCCATCCAGTTATCATTTATATTCCCT 284 Target: 47313 A--T-AAAATTCATCTTGCCA-AAGAA---ATTTTGTCCATGAACATTAAATTACGAAAG 47365 | | ||||||||| | || |*|*| |||||*|*| |*||| |||||| |*|*| Query: 285 AACTCAAAATTCAT-T---CACATGTATTCATTTTTTTC-TAAAC---AAATTA-GCATG 335 Target: 47366 GTATTATATGTTTTTTTGGT--AAATTAAGCATTTAAATAATAGCACAACAAGGTA---- 47419 ||*| *||*|||| |||||**|| ||||*|||*|**|||| Query: 336 ----TAGA----ATTCTGGTTAAAATTTGGC---------ATAGAACACCCGGGTATTTT 378 Target: 47420 CTCTTAAGGCAC----TAATCTGCTCTTTAGCAAAATTTGTAAA--GTG--TTATAAACG 47471 *||*|||*|||| ||| ||| ||*|| ||**|*|||**|| ||| |||**||*| Query: 379 TTCATAATGCACCCAATAA-CTG-TCATT--CACTAATTGAGAATGGTGATTTAACAAAG 434 Target: 47472 GGTTTTACTTTTGTAAATTTTTTGAAACAATTGTGGCAAAA------TAAATAACATGGT 47525 | | |**|||| *||*||||||*|*||***||||| |***|||| |||| Query: 435 G-----A---TAATAAA-GTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC-TGGT 484 Target: 47526 AATCTG-GAAT-TCTATTTCATAACATCAAGTGT-TTTAA-------ACCTCTAACATTT 47575 *|*|| |**| |*|*|*| *| *| |||| |*||| |*****||*|||| Query: 485 -GTGTGTGTGTGTGTGTGT-GT---GT---GTGTGTGTAAGAGGGAGAGAGAGAAAATTT 536 Target: 47576 C-TTC---CCA-AAATCAAAC----TTCAGTTTCAAAATTGT--CTTTCCT---CGTGC- 47620 | *|| ||| |||||**|| ||| *|||| ||*| ||||||| |*||| Query: 537 CACTCCCTCCATAAATCTCACAGTATTC-TTTTC----TTTTTCCTTTCCTTTCCTTGCT 591 Target: 47621 CTGACTTT-TGAATGCTACAGAGGGC---CCCTGGAGTATCC-------AAAAGAGAGGT 47669 || *|||| | || |**|**|| ||*|**| |*||| ||||||*|**| Query: 592 CT-TCTTTCT-----CT-CCTATTGCTTTCCTTTCA-TTTCCTTCTCATAAAAGAAAAAT 643 Target: 47670 AAACTGGATTATTTGACATATTTAGTTACATGGGATTGCCAATCTTCTTTAGGTTATAT- 47728 ||| |*|||***|*|||***|**||*| |||*|*|||*||| |||| |||| Query: 644 -AAC---AATATAGAAAATAACAAAATATA---GATGGTCAACCTT-TTTA----ATATT 691 Target: 47729 -AGGTTA--TATTTTG--AT-----AAA-T-ATTCTATAGGTTATATTTTGATAAATGAT 47776 |||||| ||***|| || ||| | *||||*||| |*||**||||**|| || Query: 692 AAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTCTAG---AGATGCTGATGTAT-AT 747 Target: 47777 ACTAATATATGTTCCAAAATTGTATGAGATTTCTAATGTCTGAGTATATGCTATCAAAAT 47836 |||*|*||||*|| |*|*|||| |||*||| ***|||||||| || || Query: 748 ACTTACATATTTT---ACAGTGTA------TTCAAAT-AAAGAGTATAT--TA-CA---- 790 Target: 47837 TAAG--GTTT--TTATGT---TAAGTTATTGT-A--AAC----CACAGAGA-TT---ATC 47878 |||| *|*| ||*||| *||*|| |||| | ||| *||*| || || |*| Query: 791 TAAGACATATCCTTTTGTAACCAACTT-TTGTCATTAACAATTTACTG-GACTTGTCAAC 848 Target: 47879 AAACTTCTTTGTCAACTGTGTTTCTGACTATAA---CTACCCTGGACATTTTGTTATTCA 47935 |||| || ||*|*|||*|| |*|||||| |||| |**|||||||*||| Query: 849 AAAC--CT-----AAATCTGTATC-GTCTATAATGGCTAC---GTTCATTTTGGTAT--- 894 Target: 47936 AAGACAATTGTCTTGTTTAGATCCTTTTCAAGAGATAGTTTATAAGA--AGCTACAGAAC 47993 || | ||||**|| |*||*|||| *| *||**|||| |*|| **|| ||*| Query: 895 --GA-A----TCTTAATT--ACCCCTTTC-TG-CATTATTTA-ATGATTTTCT-CATA-- 939 Target: 47994 TGTGACAGGTGCTCTCAAATGCAGTTTTCCAA---ATAACTTTGGAGATCATGACAT--T 48048 ||| || ||||*|||||*| *|||*|| *|*||||| | |||*|||| | Query: 940 TGT--CA----CTCTTAAATGTA--CTTCTAATTTTTCACTTT--A---CATCACATAAT 986 Target: 48049 GAA---AT--AAAGTA 48059 ||| || ||| || Query: 987 GAATGGATCCAAA-TA 1001 target_name: chr5 query_name: chr1 optimal_alignment_score: 230 suboptimal_alignment_score: 199 strand: + target_begin: 8806 target_end: 9723 query_begin: 11 query_end: 974 Target: 8806 AATGGCCAGGGCACTGAGGAG-CTGTGGAAGAACTGGGGAAATCACCGAAACCCAGTAC- 8863 |||*||||*|*|| | ||*|| *|*|*||***||| *|*||*| |*| |**|||*||| Query: 11 AATCGCCACGACA-T-AGTAGTATTTAGAGTTACT--AGTAAGC-CTG-ATGCCACTACA 64 Target: 8864 CATTTCAGTGAGGCCATTCTC--CA--AAAACTCTCTC---CA-TCTTATTTCTT---G- 8911 ||*||| | | ||**||||| *| |**|*|*|*|| || ||||||*|||| | Query: 65 CAATTC--T-A-GCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 Target: 8912 ------GGGAAAGAGTTCTTCTACT--TACAATATGAT---CAACCTGA--TTAAG---A 8955 *|||||*|*||*|| ||*| ||*|||*|*|| |||**||| *||*| * Query: 121 AAACATAGGAAAAAATTATT-TAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTT 179 Target: 8956 AT-ATATTGGTTT-CTATAACTGTGATGCAGATTATAACTATACAAATGCCAATTACCAG 9013 || |*|*||*||| |||| ||| *|*|||**||**||| | |*|| || |*|* Query: 180 ATAAGAGTGTTTTCCTAT---TGT-TTTCAGTGTAGGACT---C-ACTG----TT-CTAA 226 Target: 9014 A-AGCTAAGCCACCC--TGATTC--CAAAAT---AT--AGTCTCACATTTCATGGTTTCC 9063 | |*||**|*||||| *||||| *||||| || ||| |**||||| || *|||| Query: 227 ATAACTGGGACACCCAAGGATTCTGTAAAATGCCATCCAGT-TATCATTT-AT--ATTCC 282 Target: 9064 TGGTA--TCAGAAATCCCTATGAGCCTG-A--GATTTTTTCCCTTAA-------AGCA-- 9109 *|| ||| ||||*|*| |*| |*|| | *|||||||*| ||| |||| Query: 283 --CTAACTCA-AAATTCAT-TCA-CATGTATTCATTTTTTTC--TAAACAAATTAGCATG 335 Target: 9110 ---AATACTG---AAGAT-----A-AGAA-ACC----AATTAATTTCATTGTTGC----- 9147 |||*||| ||*|| | |||| ||| *||| *||||| |**||| Query: 336 TAGAATTCTGGTTAAAATTTGGCATAGAACACCCGGGTATT-TTTTCA-TAATGCACCCA 393 Target: 9148 -TATCTTGT-AT---CCAATGGCATAA----AATCTATACTAACTTGATTAGAAA-TTCT 9197 ||*| ||| || |*|||*| |*|| *||*|| ||*|| *|||*|*||| ||*| Query: 394 ATAAC-TGTCATTCACTAATTG-AGAATGGTGATTTA-ACAAA--GGATAATAAAGTTAT 448 Target: 9198 G---CCAATG------AACAACT-T---TA--T--TGT-TTTGAGTGATG---------- 9229 | |||||| ||||*|| | || | ||| |*||*||| || Query: 449 GAAACCAATGCCACAAAACATCTGTCTCTAACTGGTGTGTGTGTGTG-TGTGTGTGTGTG 507 Target: 9230 -------AAGCCCCATTTGAGA-ATATAGGCTCAATGGCCTTGC-----TCT-----TA- 9270 |||****| |||| |*|*|***|||*| ||*|*| ||| || Query: 508 TGTGTGTAAGAGGGA---GAGAGAGAAAATTTCACT--CCCTCCATAAATCTCACAGTAT 562 Target: 9271 ACTGTTCTCTATGCAGTCACTTTCTTCTGCACTAAAGTGCCAATACAGATACTG-AATAC 9329 *||*||||*|*|*|**|| |||||*| |||*|| **|**|**|*| ||*|| **|*| Query: 563 TCTTTTCTTTTTCCTTTC-CTTTCCT-TGCTCT--TCTTTCTCTCC---TATTGCTTTCC 615 Target: 9330 ATTGATTTAAAT-ACATAGATATATAAATA--GATAT-TTAAATATGC--AATATATATG 9383 *||*||||***| *|||| |*|*|*||||| *|||| **||||| *| ||||||*||| Query: 616 TTTCATTTCCTTCTCATA-AAAGAAAAATAACAATATAGAAAATA-ACAAAATATAGATG 673 Target: 9384 G--ATAC---TTTATATATT--GATT---TAAA----CATTTTCC--------TCTCATA 9421 | | || |||| ||||| |*|| |||| ||||*||| |||| || Query: 674 GTCA-ACCTTTTTA-ATATTAAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTC-TA 730 Target: 9422 GA-----TGA--AAAATCACTCTAACATGTATTGATGGCTTCACA-AGAAATCATTTACA 9473 || ||| *|*|| ||| | ||| |||| || ||| *|*|*|||**||*| Query: 731 GAGATGCTGATGTATAT-ACT-T-ACA--TATT------TT-ACAGTGTATTCAAATAAA 778 Target: 9474 GAAAATAATTGCATATGATACAGT--GTTTGTGCCAAAATGTATTCATGGCTTTAAAAAC 9531 ||**|| |||*||||*||*|*| | *|||||**|*||*| CPU time: 4.071444 seconds || ||*|*||||*|| Query: 779 GAGTAT-ATTACATAAGACATA-TCCTTTTGTAACCAACT---TT--TGTCATTAACAA- 830 Target: 9532 TTCAGTGGAAATGTCTATTCAGATCCCTAGCCCATTGTTAAATTGGTTTCTGTTTTCTTG 9591 ||*|*||||**||||*| || |*|| |||||**||*|| | ||| Query: 831 TTTACTGGACTTGTCAA--CA-AACC------------TAAATCTGTATC-G---TCT-- 869 Target: 9592 CTAAGTTTGAGCTGC-TTATAGATGATGGATATTGACCCCTTATAGATGTTGGATATTGA 9650 *||| || |||*| || *||**||| || ||| ||*|| | ||| | Query: 870 ATAA---TG-GCTACGTT---CATTTTGG-TA-TGA----------ATCTT--A-ATT-A 906 Target: 9651 CCCC-TTGTGGATGTATGGCCGGTGCTTTTCCCAGTATTTAGGTCATCTCTGCA---CAC 9706 |||| ||*||*|| ||| ****||*|||||*|| ||| |||| ||||**| *|| Query: 907 CCCCTTTCTGCAT-TAT--TTAATGATTTTCTCA-TAT----GTCA-CTCTTAAATGTAC 957 Target: 9707 TGTTGATTGTTTC-CTTT 9723 |**|*||| |||| |||| Query: 958 TTCTAATT-TTTCACTTT 974 make[1]: Leaving directory '/build/reproducible-path/libssw-1.1' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/libssw-1.1' sed 's/@DEB_HOST_MULTIARCH@/aarch64-linux-gnu/g' debian/libssw0.install.in > debian/libssw0.install sed 's/@DEB_HOST_MULTIARCH@/aarch64-linux-gnu/g' debian/libssw-dev.install.in > debian/libssw-dev.install sed -e 's/@DEB_HOST_MULTIARCH@/aarch64-linux-gnu/g' \ -e 's/@DEB_JAVA_PKG_VERSION@/1.1/g' debian/libssw-dev.links.in > debian/libssw-dev.links sed 's/@DEB_HOST_MULTIARCH@/aarch64-linux-gnu/g' debian/libssw-java.install.in > debian/libssw-java.install sed -e 's/@DEB_HOST_MULTIARCH@/aarch64-linux-gnu/g' \ -e 's/@DEB_JAVA_PKG_VERSION@/1.1/g' debian/libssw-java.links.in > debian/libssw-java.links mv src/ssw.jar src/ssw-1.1.jar dh_auto_install make[1]: Leaving directory '/build/reproducible-path/libssw-1.1' dh_install jh_installjavadoc dh_installdocs dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/libssw-1.1' LD_LIBRARY_PATH=`pwd`/src help2man --version-string=' ' --help-option=' ' \ -I debian/extra-man-info.txt \ -N -n 'fast Smith-Waterman aligner' \ --no-discard-stderr src/ssw-align \ | fgrep -v ERROR > debian/ssw-align.1 dh_installman make[1]: Leaving directory '/build/reproducible-path/libssw-1.1' dh_perl dh_link jh_installlibs jh_classpath jh_manifest jh_exec jh_depends mh_installpoms mh_linkjars --skip-clean-poms dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dpkg-gensymbols: warning: debian/libssw0/DEBIAN/symbols doesn't match completely debian/libssw0.symbols --- debian/libssw0.symbols (libssw0_1.1-15_arm64) +++ dpkg-gensymbols95oWkT 2025-02-21 19:08:11.641352830 -1200 @@ -21,7 +21,7 @@ _ZNK20StripedSmithWaterman7Aligner13TranslateBaseEPKcRKiPa@Base 1.1 _ZNK20StripedSmithWaterman7Aligner5AlignEPKcRKNS_6FilterEPNS_9AlignmentE@Base 1.1 _ZNK20StripedSmithWaterman7Aligner5AlignEPKcS2_RKiRKNS_6FilterEPNS_9AlignmentE@Base 1.1 - (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 1.1 +#MISSING: 1.1-15# (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 1.1 align_destroy@Base 1.1 init_destroy@Base 1.1 mark_mismatch@Base 1.1 dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libssw0' in '../libssw0_1.1-15_arm64.deb'. dpkg-deb: building package 'ssw-align' in '../ssw-align_1.1-15_arm64.deb'. dpkg-deb: building package 'libssw0-dbgsym' in '../libssw0-dbgsym_1.1-15_arm64.deb'. dpkg-deb: building package 'libssw-dev' in '../libssw-dev_1.1-15_arm64.deb'. dpkg-deb: building package 'libssw-java-dbgsym' in '../libssw-java-dbgsym_1.1-15_arm64.deb'. dpkg-deb: building package 'libssw-java' in '../libssw-java_1.1-15_arm64.deb'. dpkg-deb: building package 'ssw-align-dbgsym' in '../ssw-align-dbgsym_1.1-15_arm64.deb'. dpkg-genbuildinfo --build=binary -O../libssw_1.1-15_arm64.buildinfo dpkg-genchanges --build=binary -O../libssw_1.1-15_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/63854 and its subdirectories I: Current time: Fri Feb 21 19:08:14 -12 2025 I: pbuilder-time-stamp: 1740208094 Sat Feb 22 07:08:14 UTC 2025 I: Signing ./b1/libssw_1.1-15_arm64.buildinfo as libssw_1.1-15_arm64.buildinfo.asc Sat Feb 22 07:08:14 UTC 2025 I: Signed ./b1/libssw_1.1-15_arm64.buildinfo as ./b1/libssw_1.1-15_arm64.buildinfo.asc Sat Feb 22 07:08:14 UTC 2025 - build #1 for libssw/unstable/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Sat Feb 22 07:08:14 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-gzsVeRKW, removing. /srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 07:08 b1 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 07:07 b2 -rw-r--r-- 1 jenkins jenkins 2509 Jul 23 2024 libssw_1.1-15.dsc -rw------- 1 jenkins jenkins 3609 Feb 22 07:07 rbuildlog.oOSML63 /srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o/b1: total 480 -rw-r--r-- 1 jenkins jenkins 99642 Feb 22 07:08 build.log -rw-r--r-- 1 jenkins jenkins 23072 Feb 22 07:08 libssw-dev_1.1-15_arm64.deb -rw-r--r-- 1 jenkins jenkins 46776 Feb 22 07:08 libssw-java-dbgsym_1.1-15_arm64.deb -rw-r--r-- 1 jenkins jenkins 17300 Feb 22 07:08 libssw-java_1.1-15_arm64.deb -rw-r--r-- 1 jenkins jenkins 101532 Feb 22 07:08 libssw0-dbgsym_1.1-15_arm64.deb -rw-r--r-- 1 jenkins jenkins 19720 Feb 22 07:08 libssw0_1.1-15_arm64.deb -rw-r--r-- 1 jenkins jenkins 54308 Feb 22 07:08 libssw_1.1-15.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2509 Feb 22 07:08 libssw_1.1-15.dsc -rw-r--r-- 1 jenkins jenkins 9545 Feb 22 07:08 libssw_1.1-15_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 10427 Feb 22 07:08 libssw_1.1-15_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 3212 Feb 22 07:08 libssw_1.1-15_arm64.changes -rw-r--r-- 1 jenkins jenkins 1486 Feb 22 07:08 libssw_1.1-15_source.changes -rw-r--r-- 1 jenkins jenkins 57024 Feb 22 07:08 ssw-align-dbgsym_1.1-15_arm64.deb -rw-r--r-- 1 jenkins jenkins 20404 Feb 22 07:08 ssw-align_1.1-15_arm64.deb /srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o/b2: total 0 Sat Feb 22 07:08:15 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Feb 21 19:07:06 -12 2025 I: pbuilder-time-stamp: 1740208026 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libssw_1.1-15.dsc] I: copying [./libssw_1.1.orig.tar.gz] I: copying [./libssw_1.1-15.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libssw_1.1-15.dsc: unsupported subcommand dpkg-source: info: extracting libssw in libssw-1.1 dpkg-source: info: unpacking libssw_1.1.orig.tar.gz dpkg-source: info: unpacking libssw_1.1-15.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying build_all_libs.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying rename_tool.patch dpkg-source: info: applying simde.patch dpkg-source: info: applying malloc I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/63854/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='9d98c0dd7b474df5932ad6a9bbee092a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='63854' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o/pbuilderrc_Z9UF --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o/b1 --logfile b1/build.log libssw_1.1-15.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/63854/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~), debhelper-compat (= 13), default-jdk-headless, javahelper, help2man, zlib1g-dev, libsimde-dev, maven-repo-helper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19889 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on default-jdk-headless; however: Package default-jdk-headless is not installed. pbuilder-satisfydepends-dummy depends on javahelper; however: Package javahelper is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on maven-repo-helper; however: Package maven-repo-helper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} binfmt-support{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} dctrl-tools{a} debhelper{a} default-jdk-headless{a} default-jre-headless{a} devscripts{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dirmngr{a} dwz{a} fastjar{a} file{a} gettext{a} gettext-base{a} gnupg{a} gnupg-l10n{a} gpg{a} gpg-agent{a} gpgconf{a} gpgsm{a} gpgv{a} groff-base{a} help2man{a} intltool-debian{a} jarwrapper{a} java-common{a} javahelper{a} libarchive-zip-perl{a} libassuan9{a} libb-hooks-op-check-perl{a} libclass-method-modifiers-perl{a} libclass-xsaccessor-perl{a} libclone-perl{a} libdebhelper-perl{a} libdevel-callchecker-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libexpat1{a} libffi8{a} libfile-dirlist-perl{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-touch-perl{a} libfile-which-perl{a} libgcrypt20{a} libgnutls30t64{a} libgpg-error0{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libidn2-0{a} libimport-into-perl{a} libio-html-perl{a} libio-pty-perl{a} libio-socket-ssl-perl{a} libipc-run-perl{a} libjpeg62-turbo{a} libksba8{a} liblcms2-2{a} libldap2{a} liblocale-gettext-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libmodule-runtime-perl{a} libmoo-perl{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnpth0t64{a} libnspr4{a} libnss3{a} libp11-kit0{a} libparams-classify-perl{a} libpcsclite1{a} libpipeline1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librole-tiny-perl{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libsub-quote-perl{a} libtasn1-6{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml2{a} m4{a} man-db{a} maven-repo-helper{a} media-types{a} netbase{a} openjdk-21-jdk-headless{a} openjdk-21-jre-headless{a} openssl{a} patchutils{a} perl-openssl-defaults{a} pinentry-curses{a} po-debconf{a} python3{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sopv-gpgv{a} tzdata{a} wdiff{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl debian-keyring dput dput-ng dupload equivs gnupg-utils gpg-wks-client libarchive-cpio-perl libasound2t64 libcups2t64 libdata-dump-perl libdistro-info-perl libfontconfig1 libfreetype6 libgit-wrapper-perl libgitlab-api-v4-perl libgpg-error-l10n libharfbuzz0b libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libio-compress-brotli-perl libjson-perl libldap-common liblist-compare-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libnamespace-clean-perl liboss4-salsa-asound2 libsasl2-modules libsoap-lite-perl libstring-shellquote-perl libxstring-perl licensecheck lintian lynx lzip pristine-tar python3-apt python3-argcomplete python3-debian python3-magic python3-requests python3-unidiff python3-xdg strace unzip wget 0 packages upgraded, 131 newly installed, 0 to remove and 0 not upgraded. Need to get 163 MB of archives. After unpacking 459 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 binfmt-support arm64 2.2.2-7+b1 [68.2 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-7+b1 [15.2 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.2-1 [853 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.2-1 [1997 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.1-2 [27.0 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 media-types all 11.0.0 [27.6 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025a-2 [259 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.2-1 [1914 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.2-1 [745 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.1-2 [9952 B] Get: 17 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.1-2 [28.0 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.4.1-1 [1390 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20241223 [164 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-4 [92.1 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-3 [862 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 ca-certificates-java all 20240118 [11.6 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 dctrl-tools arm64 2.24-3+b1 [125 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-3 [539 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 42 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 java-common all 0.76 [6776 B] Get: 52 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libnspr4 arm64 2:4.36-1 [102 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libnss3 arm64 2:3.108-1 [1293 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libpcsclite1 arm64 2.3.1-1 [55.3 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 openjdk-21-jre-headless arm64 21.0.6+7-1 [40.6 MB] Get: 58 http://deb.debian.org/debian unstable/main arm64 default-jre-headless arm64 2:1.21-76 [3192 B] Get: 59 http://deb.debian.org/debian unstable/main arm64 openjdk-21-jdk-headless arm64 21.0.6+7-1 [81.9 MB] Get: 60 http://deb.debian.org/debian unstable/main arm64 default-jdk-headless arm64 2:1.21-76 [1124 B] Get: 61 http://deb.debian.org/debian unstable/main arm64 libgpg-error0 arm64 1.51-3 [78.5 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libassuan9 arm64 3.0.1-2 [58.1 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libgcrypt20 arm64 1.11.0-7 [742 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 gpgconf arm64 2.2.46-1+b1 [115 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libksba8 arm64 1.6.7-2+b1 [125 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 libnpth0t64 arm64 1.8-2 [22.8 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 dirmngr arm64 2.2.46-1+b1 [344 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 gnupg-l10n all 2.2.46-1 [702 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 gpg arm64 2.2.46-1+b1 [481 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 pinentry-curses arm64 1.3.1-2 [83.5 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 gpg-agent arm64 2.2.46-1+b1 [231 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 gpgsm arm64 2.2.46-1+b1 [232 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 gnupg all 2.2.46-1 [376 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 gpgv arm64 2.2.46-1+b1 [200 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 sopv-gpgv all 0.1.1-1 [10.7 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 libfile-dirlist-perl all 0.05-3 [7600 B] Get: 84 http://deb.debian.org/debian unstable/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libfile-touch-perl all 0.12-2 [8816 B] Get: 87 http://deb.debian.org/debian unstable/main arm64 libio-pty-perl arm64 1:1.20-1+b2 [34.0 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libipc-run-perl all 20231003.0-2 [101 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libclass-xsaccessor-perl arm64 1.19-4+b5 [34.9 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b2 [10.6 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libdevel-callchecker-perl arm64 0.009-1+b1 [16.3 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libparams-classify-perl arm64 0.015-2+b4 [22.3 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 libimport-into-perl all 1.002005-2 [11.3 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libmoo-perl all 2.005005-1 [58.0 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 liburi-perl all 5.30-1 [105 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libhtml-parser-perl arm64 3.83-1+b2 [97.5 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B] Get: 115 http://deb.debian.org/debian unstable/main arm64 libnet-ssleay-perl arm64 1.94-3 [323 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 libnet-http-perl all 6.23-1 [23.9 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 libwww-perl all 6.77-1 [183 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 patchutils arm64 0.4.2-1+b1 [71.3 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 wdiff arm64 1.2.2-7 [121 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 devscripts all 2.25.3 [1058 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 fastjar arm64 2:0.98-7+b1 [74.9 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 help2man arm64 1.49.3+b1 [198 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 jarwrapper all 0.80 [9692 B] Get: 128 http://deb.debian.org/debian unstable/main arm64 javahelper all 0.80 [80.4 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 libsimde-dev all 0.8.2-2 [467 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 maven-repo-helper all 1.11 [142 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 163 MB in 1s (278 MB/s) Preconfiguring packages ... Selecting previously unselected package libpipeline1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19889 files and directories currently installed.) Preparing to unpack .../0-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package binfmt-support. Preparing to unpack .../1-binfmt-support_2.2.2-7+b1_arm64.deb ... Unpacking binfmt-support (2.2.2-7+b1) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../2-liblocale-gettext-perl_1.07-7+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../3-libpython3.13-minimal_3.13.2-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.2-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../4-libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../5-python3.13-minimal_3.13.2-1_arm64.deb ... Unpacking python3.13-minimal (3.13.2-1) ... Setting up libpython3.13-minimal:arm64 (3.13.2-1) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.13-minimal (3.13.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20262 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.1-2_arm64.deb ... Unpacking python3-minimal (3.13.1-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_11.0.0_all.deb ... Unpacking media-types (11.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025a-2_all.deb ... Unpacking tzdata (2025a-2) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.4.7-1_arm64.deb ... Unpacking libffi8:arm64 (3.4.7-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.2-6_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_arm64.deb ... Unpacking python3.13 (3.13.2-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.13.1-2_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.13.1-2) ... Setting up python3-minimal (3.13.1-2) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21272 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.1-2_arm64.deb ... Unpacking python3 (3.13.1-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.4.1-1_arm64.deb ... Unpacking openssl (3.4.1-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20241223_all.deb ... Unpacking ca-certificates (20241223) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../008-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40.4-4_arm64.deb ... Unpacking bsdextrautils (2.40.4-4) ... Selecting previously unselected package man-db. Preparing to unpack .../011-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../012-m4_1.4.19-5_arm64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../013-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... 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Setting up libclone-perl:arm64 (0.47-1+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up perl-openssl-defaults:arm64 (7+b2) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libgcrypt20:arm64 (1.11.0-7) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8+b1) ... Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Feb 22 07:07:29 UTC 2025. Universal Time is now: Sat Feb 22 07:07:29 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Setting up libnspr4:arm64 (2:4.36-1) ... Setting up gnupg-l10n (2.2.46-1) ... Setting up libunistring5:arm64 (1.3-1) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.23.1-1) ... Setting up binfmt-support (2.2.2-7+b1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libb-hooks-op-check-perl:arm64 (0.22-3+b2) ... Setting up libipc-run-perl (20231003.0-2) ... Setting up libpcsclite1:arm64 (2.3.1-1) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8+b1) ... Setting up autoconf (2.72-3) ... Setting up libtimedate-perl (2.3300-2) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up gpgv (2.2.46-1+b1) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libassuan9:arm64 (3.0.1-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up netbase (6.4) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b5) ... Setting up libfile-dirlist-perl (0.05-3) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up openssl (3.4.1-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libldap2:arm64 (2.6.9+dfsg-1) ... Setting up liburi-perl (5.30-1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up libfile-touch-perl (0.12-2) ... Setting up dctrl-tools (2.24-3+b1) ... Setting up libnet-ssleay-perl:arm64 (1.94-3) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libksba8:arm64 (1.6.7-2+b1) ... Setting up pinentry-curses (1.3.1-2) ... Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.23.1-1) ... Setting up libfile-listing-perl (6.16-1) ... Setting up jarwrapper (0.80) ... Setting up libtool (2.5.4-3) ... Setting up libnet-http-perl (6.23-1) ... Setting up libidn2-0:arm64 (2.3.7-2+b1) ... Setting up libnss3:arm64 (2:3.108-1) ... Setting up libdevel-callchecker-perl:arm64 (0.009-1+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3+b1) ... Setting up dh-autoreconf (20) ... Setting up patchutils (0.4.2-1+b1) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-7) ... Setting up libhtml-parser-perl:arm64 (3.83-1+b2) ... Setting up gpgconf (2.2.46-1+b1) ... Setting up ca-certificates-java (20240118) ... No JRE found. Skipping Java certificates setup. Setting up libpython3.13-stdlib:arm64 (3.13.2-1) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up gpg (2.2.46-1+b1) ... Setting up libpython3-stdlib:arm64 (3.13.1-2) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libgnutls30t64:arm64 (3.8.9-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up gpg-agent (2.2.46-1+b1) ... Setting up openjdk-21-jre-headless:arm64 (21.0.6+7-1) ... update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libhttp-cookies-perl (6.11-1) ... Setting up python3.13 (3.13.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:arm64 (0.015-2+b4) ... Setting up gpgsm (2.2.46-1+b1) ... Setting up python3 (3.13.1-2) ... Setting up sopv-gpgv (0.1.1-1) ... update-alternatives: using /usr/bin/sopv-gpgv to provide /usr/bin/sopv (sopv) in auto mode Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up dirmngr (2.2.46-1+b1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up gnupg (2.2.46-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up debhelper (13.24.1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.77-1) ... Setting up devscripts (2.25.3) ... Setting up javahelper (0.80) ... Processing triggers for libc-bin (2.40-7) ... Processing triggers for ca-certificates-java (20240118) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:BJCA_Global_Root_CA1.pem Adding debian:BJCA_Global_Root_CA2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:CommScope_Public_Trust_ECC_Root-01.pem Adding debian:CommScope_Public_Trust_ECC_Root-02.pem Adding debian:CommScope_Public_Trust_RSA_Root-01.pem Adding debian:CommScope_Public_Trust_RSA_Root-02.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureSign_Root_CA12.pem Adding debian:SecureSign_Root_CA14.pem Adding debian:SecureSign_Root_CA15.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_CYBER_Root_CA.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustAsia_Global_Root_CA_G3.pem Adding debian:TrustAsia_Global_Root_CA_G4.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up openjdk-21-jdk-headless:arm64 (21.0.6+7-1) ... update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jwebserver to provide /usr/bin/jwebserver (jwebserver) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up default-jre-headless (2:1.21-76) ... Setting up maven-repo-helper (1.11) ... Setting up default-jdk-headless (2:1.21-76) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20240118) ... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libssw-1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libssw_1.1-15_source.changes dpkg-buildpackage: info: source package libssw dpkg-buildpackage: info: source version 1.1-15 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with javahelper --with jh_maven_repo_helper debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/libssw-1.1' rm -f debian/libssw*install debian/libssw*links debian/ssw-align.1 dh_auto_clean --sourcedirectory src cd src && make -j12 clean make[2]: Entering directory '/build/reproducible-path/libssw-1.1/src' rm -f ssw.o ssw_cpp.o ssw-align libssw.so.0 example_c example_cpp libsswjni.so *.jar ssw/Aligner.class ssw/Alignment.class *~ libssw.a make[2]: Leaving directory '/build/reproducible-path/libssw-1.1/src' make[1]: Leaving directory '/build/reproducible-path/libssw-1.1' jh_clean Duplicate specification "u=s" for option "u" dh_clean debian/rules binary dh binary --with javahelper --with jh_maven_repo_helper dh_update_autotools_config dh_autoreconf jh_linkjars debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/libssw-1.1' dh_auto_build --sourcedirectory src -- default java cd src && make -j12 "INSTALL=install --strip-program=true" default java make[2]: Entering directory '/build/reproducible-path/libssw-1.1/src' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libssw-1.1=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -shared -rdynamic -Wl,-soname,libssw.so.0 -o libssw.so.0 ssw.c ssw.h ssw_cpp.h ssw_cpp.cpp -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now cc -c -o ssw.o ssw.c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libssw-1.1=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 g++ -c -o ssw_cpp.o ssw_cpp.cpp -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libssw-1.1=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 javac ssw/Aligner.java javac ssw/Alignment.java cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libssw-1.1=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -I"/include" -I"/include/linux" -I/usr/lib/jvm/default-java/include/ -I/usr/lib/jvm/default-java/include/linux -fPIC -shared -rdynamic -o libsswjni.so sswjni.c ssw.c -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now jar cvf ssw.jar ssw/Aligner.class ssw/Alignment.class added manifest adding: ssw/Aligner.class(in = 2486) (out= 1527)(deflated 38%) adding: ssw/Alignment.class(in = 1029) (out= 602)(deflated 41%) ar rcs libssw.a ssw.o ssw_cpp.o cc -o example_c ssw.o example.c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libssw-1.1=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now g++ -o example_cpp example.cpp ssw.o ssw_cpp.o -g -O2 -ffile-prefix-map=/build/reproducible-path/libssw-1.1=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libssw-1.1=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -o ssw-align main.c kseq.h -L. -lssw -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/libssw-1.1/src' make[1]: Leaving directory '/build/reproducible-path/libssw-1.1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libssw-1.1' LD_PRELOAD="$LD_PRELOAD /build/reproducible-path/libssw-1.1/src/libssw.so" src/ssw-align -c demo/ref.fa demo/1k.fa ERROR: ld.so: object '/build/reproducible-path/libssw-1.1/src/libssw.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. target_name: chr1 query_name: chr1 optimal_alignment_score: 2002 suboptimal_alignment_score: 1000 strand: + target_begin: 1 target_end: 1001 query_begin: 1 query_end: 1001 Target: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 Target: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 Target: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 Target: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 Target: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 Target: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 Target: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 Target: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 Target: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 Target: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 Target: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 Target: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 Target: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 Target: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 Target: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 Target: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 Target: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 ||||||||||||||||||||||||||||||||||||||||| Query: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 target_name: chr2 query_name: chr1 optimal_alignment_score: 312 suboptimal_alignment_score: 311 strand: + target_begin: 4437430 target_end: 4438470 query_begin: 9 query_end: 971 Target: 4437430 TTGAT-TCCACAGATTCCAATAGAATAGTTTGAAGATGGAACAATTGAGAATTCTGAATG 4437488 ||*|| *|||| || | |||| ||||*|**||| |**||*|*| ||**||| ||| Query: 9 TTAATCGCCAC-GA--C--ATAG--TAGTATTTAGA-GTTACTAGT---AAGCCTG-ATG 56 Target: 4437489 ---CTAAGCTAAT--TAGATATGTTTTCTTTGAAGGAAAACTACATTGTATTATTTTGCC 4437543 |||**| ||| |||*| | ||*||||| |||| | *|||||*|*|||**| Query: 57 CCACTACAC-AATTCTAGCT-T-TTCTCTTT--AGGA----T-GATTGTTTCATTCAG-- 104 Target: 4437544 TCCTCCCTCCTCCTAGAAGCCTT----TAAAATTCATGCATCATTTTAAAAGTTTTGAAA 4437599 ||*|**|| ||**|||||**|*| *|||||| || *|*||**||||| ||| || Query: 105 TCTTATCT-CTTTTAGAAAACATAGGAAAAAATT-AT--TTAATAATAAAA-TTT--AA- 156 Target: 4437600 TTTTTCAAGATTATGTTTAA-GTAT--ATTA-AATATTTTGTTCAGTCATCCCAATTAGT 4437655 ||**||| | ||| || |||| *||| ||*| *|||| |*||*||| || Query: 157 -TTGGCAA-A--ATG---AAGGTATGGCTTATAAGA--GTGTT------TTCCTATT-GT 200 Target: 4437656 TTTCAATG--G----CCCT-TTCCATTTAAAGAGTTTGGACATTCCATATAAAAAAG-AC 4437707 |||||*|| | |*|| ||| ||||*|**|*||||| *||| |**|****| |* Query: 201 TTTCAGTGTAGGACTCACTGTTC----TAAATAACTGGGACA-CCCA-AGGATTCTGTAA 254 Target: 4437708 AATGTCATCTACA-TTTTC-TTTGTTTT--CT---T---AATT-AT----ATCTTTTCCT 4437752 ||||*|||| || ||*|| |||*|*|| || | |||| || ||*|*|||*| Query: 255 AATGCCATC--CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCACATGTATTCAT 312 Target: 4437753 TTTTACAAATTTCTTAA-AAA-TAG-GTGTAAGATCTCTGATTTAACCTATGTGCGT--- 4437806 ||| |||||*|| ||| ||| *||| |||**|||| *||||**|*|| ||*| Query: 313 TTT------TTTCTAAACAAATTAGCATGT-AGAATTCTG-GTTAAAATTTG-GCATAGA 363 Target: 4437807 -C------TTAATTTTTCA----GCTTC---T--CTGTCATT---TTATT-AGATGTTTT 4437846 | *||*||||||| ||**| | |||||||| |*||| ||| Query: 364 ACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGA------ 417 Target: 4437847 TATTGT-TTTTAA------TTACTAAATTAATCTTAATCTATG-CTTATTATATCATTCT 4437898 ||*|| *||||| *||*||||*|*|| **||*|*||| |**|**|*|||**||| Query: 418 -ATGGTGATTTAACAAAGGATAATAAAGTTAT-GAAACCAATGCCACAAAACATCTGTCT 475 Target: 4437899 CCATTAC--GT-TATGGATACAACAACT-TG-GTGAATGTTTCTG----AGATTAACACT 4437949 | |*|| || |*||**| *| || |||**|||*|*|| |||***|*|** Query: 476 C--TAACTGGTGTGTGTGT-------GTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGA 526 Target: 4437950 AAAAATATTTAACAATCTCTCTCATTTTTATC----TTTTC-TTTCTTTTTCTCTTTGTC 4438004 *|*||*|||| ||*||*||| |||***|*|| |*||| |||||||||| |||| *| Query: 527 GAGAAAATTT--CACTCCCTC-CATAAATCTCACAGTATTCTTTTCTTTTTC-CTTT-CC 581 Target: 4438005 TTT-CTCACTCTCTATTTATCCTGTTACATCTTTGCTTCTATCTCTTTCTCTGTTTTTTT 4438063 ||| ||**|||| |*|||*| ||**|| |||||| || ||||| *|||**|| Query: 582 TTTCCTTGCTCT-TCTTTCT-CTCCTA-----TTGCTT---TC-CTTTC---ATTTCCTT 627 Target: 4438064 TTTTTAATATTTAAATAATGCTTCTGTCTGAGGAGGTTAAGAAGTGAAAGAAGACATTGT 4438123 *|**|||*|***|||||| |**|*| || || || | ||*||*|*|| Query: 628 CTCATAAAAGAAAAATAA-----CAATAT-AG------AA-AA-T--AACAAAATAT--- 668 Target: 4438124 GAGATGGAGAATCTTTATTAAGATAGAAG---AC--AAAGAGGGGATGAT-----GTGGA 4438173 ||||||**||*|||| ||||*|| *||| || ||| |*|**||*|| |||| Query: 669 -AGATGGTCAACCTTT-TTAATAT-TAAGGTTACCTAAA-ATGCCATTATCCAAAGTGG- 723 Target: 4438174 CACTT-TC-AG-GATG-TGGAATGGT---TACATACATTATT---CTGT-TA-TCACAAG 4438221 || || || |||| || || || |||*|||| |||| |*|| || ||| || Query: 724 ---TTCTCTAGAGATGCTG--AT-GTATATACTTACA-TATTTTACAGTGTATTCA-AA- 774 Target: 4438222 GTTAGCTAA-ACTCTCTTTCATAA-A-ATCTCTCTTGTTTCTTACTCCCTAAATCTCAAA 4438278 || || |*|*|*||*||||| | ||*|| || |||*|*|| | || || Query: 775 --TA---AAGAGTATATTACATAAGACATATC-CT--TTTGTAAC-C---AA--CT---- 816 Target: 4438279 TAAGTGACTAAAAAATGCCTGGA--TGACCCCAAACAGTAAGAATAGCTTGTA-GGTCTC 4438335 |**||*|*|||*||*|**||||| ||*|**||||| *|| ||| | |||| *||||* Query: 817 TTTGTCATTAACAATTTACTGGACTTGTCAACAAAC-CTA--AAT--C-TGTATCGTCTA 870 Target: 4438336 TGAAG---ATGTTATCTTTTGCCCTGGGAAGGTGGATTCCTATACTAACACCTGCACTTG 4438392 |*|*| |*|| ||*||| |||*| ||*|| || ||*|*||*||| || Query: 871 TAATGGCTACGT--TCATTT----TGGTA---TGAAT--CT-TAATTACCCCT----TT- 913 Target: 4438393 AAAAGGTGAACAAGATAATTTTGTATTTATTTTCTCACTA--CCACTGCAGGTAGCATGG 4438450 *|| | ||*||| ||*|*||||||||| || *|||| | *|| *||| Query: 914 -----CTG--C---ATTATT---TAATGATTTTCTCA-TATGTCACT-C--TTA-AATG- 954 Target: 4438451 GACACTTCTTTATTATTCAC 4438470 *||||| |*|||*||||| Query: 955 --TACTTC-TAATTTTTCAC 971 target_name: chr3 query_name: chr1 optimal_alignment_score: 291 suboptimal_alignment_score: 289 strand: + target_begin: 680970 target_end: 682002 query_begin: 9 query_end: 998 Target: 680970 TTAAATTGTCA--ACATGGTA-TATATGAAATGAATTGGGTTTATAATAGTAAACCAATC 681026 || |||*|*|| ||||*||| ||| |*| || || ||*||||||*|| |* Query: 9 TT-AATCGCCACGACATAGTAGTAT-TTA---GA-----GT---TACTAGTAAGCC--TG 53 Target: 681027 TTG-CATTCCTAAAA---TA--AATCCTATTTAG--TTATCGT--------GTGTTATTT 681070 *|| ||*|*| |*|| || **|*||*||||| |*||*|| ||*||| |* Query: 54 ATGCCACTAC-ACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTA-TC 111 Target: 681071 TCTT----AATACAGTGTTGGATTAAGTTTGCTATTTTTTATTTTAAAATTTTACATTAT 681126 |||| ||*||| |*|||**||*| || |||*||**||||| |||| || Query: 112 TCTTTTAGAAAACA---TAGGAAAAAAT----TA--TTTAATAATAAAA-TTTA----AT 157 Target: 681127 TTTCTTCAGTGA---TATTGACCTGT---AGTTTTCTTTCATTATACTGTTTTATCAGAT 681180 |**| **|*||| || ||*|*|*| |||*| |||| *||| ||||| |||| | Query: 158 TGGC-AAAATGAAGGTA-TGGCTTATAAGAGTGT--TTTC-CTAT--TGTTT--TCAG-T 207 Target: 681181 TTAGGTATCAGTGTTAT-AGTTTCT---TCATGAAAGGAAT---TAAGATGTTTTCCTTC 681233 *||||**|||*||||*| |*|**|| *||***|||||*| |||*||| ||*|| Query: 208 GTAGGACTCACTGTTCTAAATAACTGGGACACCCAAGGATTCTGTAAAATG----CCATC 263 Target: 681234 C-CTT-TCA---ATGTT------CTGAATAATCATACAGCAT-TA-TGACTATCTGCCAT 681280 | *|| ||| ||*|| ||*||*|*||||*|| ||| || |*|*|*|*| | Query: 264 CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCA-CATGTATTCATTTTTT----T 318 Target: 681281 TTAAATC--TTTAGAAT----AATTACCTTGTGAAACTATGTGGGCTTGGTGCTATTTTG 681334 *|||| | *||||*|| |||| ||*||*||| || |*|||*|*|**| | ***| Query: 319 CTAAA-CAAATTAGCATGTAGAATT--CTGGTTAAA--AT-TTGGCATAGAAC-A-CCCG 370 Target: 681335 TGTAGTATTTATC-TAATTGTTTCCTATA--TTTC-TT--CTA--TGAAATTGGTTGATT 681386 *||| | |||*|| ||| ||***||*||| |*|| || ||| |||*|*||| ||||| Query: 371 GGTA-T-TTTTTCATAA-TGCACCCAATAACTGTCATTCACTAATTGAGAATGG-TGATT 426 Target: 681387 TAATCTTTCTAACACTAATAAGATTAATTTGAGTAAACTTCATTTCTCTAGAAAATAATT 681446 ||| |*||***||||||**||| || |||| ||*|*| | |*||||*| | Query: 427 TAA-----CAAAGGATAATAAAGTTA---TG---AAAC--CAATGC-C-ACAAAACA--T 469 Target: 681447 AATTCATCAAATTAAATCAAATTTGAAATTTGATTTCAAATTTATTTGTGTCAAAGTAA- 681505 ***|| || |||*|****|*|| |*|| |*| *|*|*|*|||||****|||| Query: 470 CTGTC-TC----TAACTGGTGTGTG---TGTG-TGT---GTGTGTGTGTGTGTGTGTAAG 517 Target: 681506 A-GGAG-G--------TTTC-CT--GT-CATTTTAAAATTCTC----TGTTGTTTTAATA 681547 | |||| | |||| || *| || |||| |||| |*||*|||| *|* Query: 518 AGGGAGAGAGAGAAAATTTCACTCCCTCCA---TAAA--TCTCACAGTATTCTTTT-CTT 571 Target: 681548 GTAACTT--GTTT-CTTATTATTTATAACTTTAT---ATATT--TGTACTT---TTTCCT 681596 *|**||| *||| |||**|*|| ||||*| *|||| |*|*||| ||||| Query: 572 TTTCCTTTCCTTTCCTTGCTCTT-----CTTTCTCTCCTATTGCTTTCCTTTCATTTCC- 625 Target: 681597 TTTTTATCAAATG--AACT--GAGTTT------TAAC-----ATCGCAT--TTAA---TT 681636 ||*|*|| |||*| ||*| *|*|*| |||| ||*| || |*|| || Query: 626 TTCTCAT-AAAAGAAAAATAACAATATAGAAAATAACAAAATATAG-ATGGTCAACCTTT 683 Target: 681637 TTAATTATCTAATCTAAATCTAAAAGCTGATATTTGATTCAA-----TTGTC-AGAAATC 681690 |||| ||| |||**| *|*|||||| ||**||| ||*||| ||*|| |||*|| Query: 684 TTAA-TAT-TAAGGT-TACCTAAAA--TGCCATT--ATCCAAAGTGGTTCTCTAGAGAT- 735 Target: 681691 TCTTAAGTATATTGGGATCAACTTGGAAAAGTAAATTGACTTTAAACAGTACACTT--TA 681748 *||*|*|||||| |||| |*| | ||| || |||||**| || *| Query: 736 GCTGATGTATAT--------ACTT--ACA--T--ATT---TT---ACAGTGTA-TTCAAA 774 Target: 681749 TGAACTTTAAATTACAGATCAGATAT--TTTTAGTAA--AA-TTTTATCCAAACTAAGAT 681803 |*||***||*||||||*|**|*|||| |||| |||| || ||||*|| |*||| Query: 775 TAAAGAGTATATTACATAAGACATATCCTTTT-GTAACCAACTTTTGTC---ATTAA--- 827 Target: 681804 GCAATATGAGTATAATCACTGATTCAA-AAAGCTTCCTTTAGTGAGCATGAAATATC-TC 681861 |||| |*|*|**|*| || |||| ||| || || *|*| || |||| | Query: 828 -CAAT-TTACTGGACT---TG--TCAACAAA----CC--TA--AATC-TG---TATCGT- 867 Target: 681862 ACTATTTTAAT---T---TTAATATTGATTGTGTGTTAAAATAATAATAATTGCATTAT- 681914 ||| |||| | ||*||*||| ||*|| |||**||||*|***|*||*| Query: 868 -CTA---TAATGGCTACGTTCATTTTG---GTATG----AATCTTAATTACCCCTTTCTG 916 Target: 681915 -ATTATTGATAATGTGTATTCTTGTCATGTTTCCATTCTTACTGGAAATG--CCTCCAGT 681971 |||||| ||||| ||| ||*||||*|*| ||*|||| ||||| |*||*|*| Query: 917 CATTATT--TAATG---ATT-TTCTCATATGT-CACTCTT-----AAATGTACTTCTAAT 964 Target: 681972 GTTTC----TCCATCAAATAGTAT-ACTGGCTCTAA 682002 *|||| |*|||||*||| || |*|||*||*|| Query: 965 TTTTCACTTTACATCACATA--ATGAATGGATCCAA 998 target_name: chr4 query_name: chr1 optimal_alignment_score: 280 suboptimal_alignment_score: 273 strand: + target_begin: 47000 target_end: 48059 query_begin: 2 query_end: 1001 Target: 47000 AAACATCTT-ATAGCTACTGGATTCTTTTTTGCCTATGTATTTA----TA-TATGT--G- 47050 |||||**|| ||*||*|| || | *|*| || ||||||| || || || | Query: 2 AAACAGGTTAATCGCCAC--GA--C---ATAG--TA-GTATTTAGAGTTACTA-GTAAGC 50 Target: 47051 CTGTAT----CTATGTAATGTCTA--TTTTTATAAAGCTCTAATTGACCTAGAGGAAAAT 47104 ||| || |||***||| |||| |||| |||| || ||| || Query: 51 CTG-ATGCCACTACACAAT-TCTAGCTTTT-------CTCT--TT-------AGG---AT 89 Target: 47105 GA--GTTT--TTGAATCAAATAT-TTTTTGAAGGGAAAGTAAAAACTGTGGTACATTGAA 47159 || |||| ||*|*||**||*| ||||*|||***|*||*||||| ||| | Query: 90 GATTGTTTCATTCAGTCTTATCTCTTTTAGAAAACATAGGAAAAA---------ATT-A- 138 Target: 47160 GTTCACATGACTAATCATTGAGAAATAAAAACAGACTTAGCAATTATTGGTAAAAAGCAG 47219 || |||| ||||||| || |*|||||*||||*|*|| Query: 139 -TT--------TAAT--------AATAAAA------TT-----TAATTGGCAAAATGAAG 170 Target: 47220 --ATG--TTAAAA-----TATAC--ATTTTTGTTCAGGGTTAAAGGA-T---TGTTCTGA 47264 ||| |||*|| |*|*| |||*|| |||||*|| |||| | ||||||*| Query: 171 GTATGGCTTATAAGAGTGTTTTCCTATTGTT-TTCAGTGT---AGGACTCACTGTTCTAA 226 Target: 47265 ATTA----GATA---A--GATAAAGCTAAAAGTTTAAACAAGTTATAA---AAAGTTTCT 47312 ||*| ||*| | |||***| ||||| |***|*|*||||||*| |*|*|**|| Query: 227 ATAACTGGGACACCCAAGGATTCTG-TAAAA-TGCCATCCAGTTATCATTTATATTCCCT 284 Target: 47313 A--T-AAAATTCATCTTGCCA-AAGAA---ATTTTGTCCATGAACATTAAATTACGAAAG 47365 | | ||||||||| | || |*|*| |||||*|*| |*||| |||||| |*|*| Query: 285 AACTCAAAATTCAT-T---CACATGTATTCATTTTTTTC-TAAAC---AAATTA-GCATG 335 Target: 47366 GTATTATATGTTTTTTTGGT--AAATTAAGCATTTAAATAATAGCACAACAAGGTA---- 47419 ||*| *||*|||| |||||**|| ||||*|||*|**|||| Query: 336 ----TAGA----ATTCTGGTTAAAATTTGGC---------ATAGAACACCCGGGTATTTT 378 Target: 47420 CTCTTAAGGCAC----TAATCTGCTCTTTAGCAAAATTTGTAAA--GTG--TTATAAACG 47471 *||*|||*|||| ||| ||| ||*|| ||**|*|||**|| ||| |||**||*| Query: 379 TTCATAATGCACCCAATAA-CTG-TCATT--CACTAATTGAGAATGGTGATTTAACAAAG 434 Target: 47472 GGTTTTACTTTTGTAAATTTTTTGAAACAATTGTGGCAAAA------TAAATAACATGGT 47525 | | |**|||| *||*||||||*|*||***||||| |***|||| |||| Query: 435 G-----A---TAATAAA-GTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC-TGGT 484 Target: 47526 AATCTG-GAAT-TCTATTTCATAACATCAAGTGT-TTTAA-------ACCTCTAACATTT 47575 *|*|| |**| |*|*|*| *| *| |||| |*||| |*****||*|||| Query: 485 -GTGTGTGTGTGTGTGTGT-GT---GT---GTGTGTGTAAGAGGGAGAGAGAGAAAATTT 536 Target: 47576 C-TTC---CCA-AAATCAAAC----TTCAGTTTCAAAATTGT--CTTTCCT---CGTGC- 47620 | *|| ||| |||||**|| ||| *|||| ||*| ||||||| |*||| Query: 537 CACTCCCTCCATAAATCTCACAGTATTC-TTTTC----TTTTTCCTTTCCTTTCCTTGCT 591 Target: 47621 CTGACTTT-TGAATGCTACAGAGGGC---CCCTGGAGTATCC-------AAAAGAGAGGT 47669 || *|||| | || |**|**|| ||*|**| |*||| ||||||*|**| Query: 592 CT-TCTTTCT-----CT-CCTATTGCTTTCCTTTCA-TTTCCTTCTCATAAAAGAAAAAT 643 Target: 47670 AAACTGGATTATTTGACATATTTAGTTACATGGGATTGCCAATCTTCTTTAGGTTATAT- 47728 ||| |*|||***|*|||***|**||*| |||*|*|||*||| |||| |||| Query: 644 -AAC---AATATAGAAAATAACAAAATATA---GATGGTCAACCTT-TTTA----ATATT 691 Target: 47729 -AGGTTA--TATTTTG--AT-----AAA-T-ATTCTATAGGTTATATTTTGATAAATGAT 47776 |||||| ||***|| || ||| | *||||*||| |*||**||||**|| || Query: 692 AAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTCTAG---AGATGCTGATGTAT-AT 747 Target: 47777 ACTAATATATGTTCCAAAATTGTATGAGATTTCTAATGTCTGAGTATATGCTATCAAAAT 47836 |||*|*||||*|| |*|*|||| |||*||| ***|||||||| || || Query: 748 ACTTACATATTTT---ACAGTGTA------TTCAAAT-AAAGAGTATAT--TA-CA---- 790 Target: 47837 TAAG--GTTT--TTATGT---TAAGTTATTGT-A--AAC----CACAGAGA-TT---ATC 47878 |||| *|*| ||*||| *||*|| |||| | ||| *||*| || || |*| Query: 791 TAAGACATATCCTTTTGTAACCAACTT-TTGTCATTAACAATTTACTG-GACTTGTCAAC 848 Target: 47879 AAACTTCTTTGTCAACTGTGTTTCTGACTATAA---CTACCCTGGACATTTTGTTATTCA 47935 |||| || ||*|*|||*|| |*|||||| |||| |**|||||||*||| Query: 849 AAAC--CT-----AAATCTGTATC-GTCTATAATGGCTAC---GTTCATTTTGGTAT--- 894 Target: 47936 AAGACAATTGTCTTGTTTAGATCCTTTTCAAGAGATAGTTTATAAGA--AGCTACAGAAC 47993 || | ||||**|| |*||*|||| *| *||**|||| |*|| **|| ||*| Query: 895 --GA-A----TCTTAATT--ACCCCTTTC-TG-CATTATTTA-ATGATTTTCT-CATA-- 939 Target: 47994 TGTGACAGGTGCTCTCAAATGCAGTTTTCCAA---ATAACTTTGGAGATCATGACAT--T 48048 ||| || ||||*|||||*| *|||*|| *|*||||| | |||*|||| | Query: 940 TGT--CA----CTCTTAAATGTA--CTTCTAATTTTTCACTTT--A---CATCACATAAT 986 Target: 48049 GAA---AT--AAAGTA 48059 ||| || ||| || Query: 987 GAATGGATCCAAA-TA 1001 target_name: chr5 query_name: chr1 optimal_alignment_score: 230 suboptimal_alignment_score: 199 strand: + target_begin: 8806 target_end: 9723 query_begin: 11 query_end: 974 Target: 8806 AATGGCCAGGGCACTGAGGAG-CTGTGGAAGAACTGGGGAAATCACCGAAACCCAGTAC- 8863 |||*||||*|*|| | ||*|| *|*|*||***||| *|*||*| |*| |**|||*||| Query: 11 AATCGCCACGACA-T-AGTAGTATTTAGAGTTACT--AGTAAGC-CTG-ATGCCACTACA 64 Target: 8864 CATTTCAGTGAGGCCATTCTC--CA--AAAACTCTCTC---CA-TCTTATTTCTT---G- 8911 ||*||| | | ||**||||| *| |**|*|*|*|| || ||||||*|||| | Query: 65 CAATTC--T-A-GCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 Target: 8912 ------GGGAAAGAGTTCTTCTACT--TACAATATGAT---CAACCTGA--TTAAG---A 8955 *|||||*|*||*|| ||*| ||*|||*|*|| |||**||| *||*| * Query: 121 AAACATAGGAAAAAATTATT-TAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTT 179 Target: 8956 AT-ATATTGGTTT-CTATAACTGTGATGCAGATTATAACTATACAAATGCCAATTACCAG 9013 || |*|*||*||| |||| ||| *|*|||**||**||| | |*|| || |*|* Query: 180 ATAAGAGTGTTTTCCTAT---TGT-TTTCAGTGTAGGACT---C-ACTG----TT-CTAA 226 Target: 9014 A-AGCTAAGCCACCC--TGATTC--CAAAAT---AT--AGTCTCACATTTCATGGTTTCC 9063 | |*||**|*||||| *||||| *||||| || ||| |**||||| || *|||| Query: 227 ATAACTGGGACACCCAAGGATTCTGTAAAATGCCATCCAGT-TATCATTT-AT--ATTCC 282 Target: 9064 TGGTA--TCAGAAATCCCTATGAGCCTG-A--GATTTTTTCCCTTAA-------AGCA-- 9109 *|| ||| ||||*|*| |*| |*|| | *|||||||*| ||| |||| Query: 283 --CTAACTCA-AAATTCAT-TCA-CATGTATTCATTTTTTTC--TAAACAAATTAGCATG 335 Target: 9110 ---AATACTG---AAGAT-----A-AGAA-ACC----AATTAATTTCATTGTTGC----- 9147 |||*||| ||*|| | |||| ||| *||| *||||| |**||| Query: 336 TAGAATTCTGGTTAAAATTTGGCATAGAACACCCGGGTATT-TTTTCA-TAATGCACCCA 393 Target: 9148 -TATCTTGT-AT---CCAATGGCATAA----AATCTATACTAACTTGATTAGAAA-TTCT 9197 ||*| ||| || |*|||*| |*|| *||*|| ||*|| *|||*|*||| ||*| Query: 394 ATAAC-TGTCATTCACTAATTG-AGAATGGTGATTTA-ACAAA--GGATAATAAAGTTAT 448 Target: 9198 G---CCAATG------AACAACT-T---TA--T--TGT-TTTGAGTGATG---------- 9229 | |||||| ||||*|| | || | ||| |*||*||| || Query: 449 GAAACCAATGCCACAAAACATCTGTCTCTAACTGGTGTGTGTGTGTG-TGTGTGTGTGTG 507 Target: 9230 -------AAGCCCCATTTGAGA-ATATAGGCTCAATGGCCTTGC-----TCT-----TA- 9270 |||****| |||| |*|*|***|||*| ||*|*| ||| || Query: 508 TGTGTGTAAGAGGGA---GAGAGAGAAAATTTCACT--CCCTCCATAAATCTCACAGTAT 562 Target: 9271 ACTGTTCTCTATGCAGTCACTTTCTTCTGCACTAAAGTGCCAATACAGATACTG-AATAC 9329 *||*||||*|*|*|**|| |||||*| |||*|| **|**|**|*| ||*|| **|*| Query: 563 TCTTTTCTTTTTCCTTTC-CTTTCCT-TGCTCT--TCTTTCTCTCC---TATTGCTTTCC 615 Target: 9330 ATTGATTTAAAT-ACATAGATATATAAATA--GATAT-TTAAATATGC--AATATATATG 9383 *||*||||***| *|||| |*|*|*||||| *|||| **||||| *| ||||||*||| Query: 616 TTTCATTTCCTTCTCATA-AAAGAAAAATAACAATATAGAAAATA-ACAAAATATAGATG 673 Target: 9384 G--ATAC---TTTATATATT--GATT---TAAA----CATTTTCC--------TCTCATA 9421 | | || |||| ||||| |*|| |||| ||||*||| |||| || Query: 674 GTCA-ACCTTTTTA-ATATTAAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTC-TA 730 Target: 9422 GA-----TGA--AAAATCACTCTAACATGTATTGATGGCTTCACA-AGAAATCATTTACA 9473 || ||| *|*|| ||| | ||| |||| || ||| *|*|*|||**||*| Query: 731 GAGATGCTGATGTATAT-ACT-T-ACA--TATT------TT-ACAGTGTATTCAAATAAA 778 Target: 9474 GAAAATAATTGCATATGATACAGT--GTTTGTGCCAAAATGTATTCATGGCTTTAAAAAC 9531 ||**|| |||*||||*||*|*| | *|||||**|*||*| CPU time: 4.071444 seconds || ||*|*||||*|| Query: 779 GAGTAT-ATTACATAAGACATA-TCCTTTTGTAACCAACT---TT--TGTCATTAACAA- 830 Target: 9532 TTCAGTGGAAATGTCTATTCAGATCCCTAGCCCATTGTTAAATTGGTTTCTGTTTTCTTG 9591 ||*|*||||**||||*| || |*|| |||||**||*|| | ||| Query: 831 TTTACTGGACTTGTCAA--CA-AACC------------TAAATCTGTATC-G---TCT-- 869 Target: 9592 CTAAGTTTGAGCTGC-TTATAGATGATGGATATTGACCCCTTATAGATGTTGGATATTGA 9650 *||| || |||*| || *||**||| || ||| ||*|| | ||| | Query: 870 ATAA---TG-GCTACGTT---CATTTTGG-TA-TGA----------ATCTT--A-ATT-A 906 Target: 9651 CCCC-TTGTGGATGTATGGCCGGTGCTTTTCCCAGTATTTAGGTCATCTCTGCA---CAC 9706 |||| ||*||*|| ||| ****||*|||||*|| ||| |||| ||||**| *|| Query: 907 CCCCTTTCTGCAT-TAT--TTAATGATTTTCTCA-TAT----GTCA-CTCTTAAATGTAC 957 Target: 9707 TGTTGATTGTTTC-CTTT 9723 |**|*||| |||| |||| Query: 958 TTCTAATT-TTTCACTTT 974 make[1]: Leaving directory '/build/reproducible-path/libssw-1.1' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/libssw-1.1' sed 's/@DEB_HOST_MULTIARCH@/aarch64-linux-gnu/g' debian/libssw0.install.in > debian/libssw0.install sed 's/@DEB_HOST_MULTIARCH@/aarch64-linux-gnu/g' debian/libssw-dev.install.in > debian/libssw-dev.install sed -e 's/@DEB_HOST_MULTIARCH@/aarch64-linux-gnu/g' \ -e 's/@DEB_JAVA_PKG_VERSION@/1.1/g' debian/libssw-dev.links.in > debian/libssw-dev.links sed 's/@DEB_HOST_MULTIARCH@/aarch64-linux-gnu/g' debian/libssw-java.install.in > debian/libssw-java.install sed -e 's/@DEB_HOST_MULTIARCH@/aarch64-linux-gnu/g' \ -e 's/@DEB_JAVA_PKG_VERSION@/1.1/g' debian/libssw-java.links.in > debian/libssw-java.links mv src/ssw.jar src/ssw-1.1.jar dh_auto_install make[1]: Leaving directory '/build/reproducible-path/libssw-1.1' dh_install jh_installjavadoc dh_installdocs dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/libssw-1.1' LD_LIBRARY_PATH=`pwd`/src help2man --version-string=' ' --help-option=' ' \ -I debian/extra-man-info.txt \ -N -n 'fast Smith-Waterman aligner' \ --no-discard-stderr src/ssw-align \ | fgrep -v ERROR > debian/ssw-align.1 dh_installman make[1]: Leaving directory '/build/reproducible-path/libssw-1.1' dh_perl dh_link jh_installlibs jh_classpath jh_manifest jh_exec jh_depends mh_installpoms mh_linkjars --skip-clean-poms dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dpkg-gensymbols: warning: debian/libssw0/DEBIAN/symbols doesn't match completely debian/libssw0.symbols --- debian/libssw0.symbols (libssw0_1.1-15_arm64) +++ dpkg-gensymbols95oWkT 2025-02-21 19:08:11.641352830 -1200 @@ -21,7 +21,7 @@ _ZNK20StripedSmithWaterman7Aligner13TranslateBaseEPKcRKiPa@Base 1.1 _ZNK20StripedSmithWaterman7Aligner5AlignEPKcRKNS_6FilterEPNS_9AlignmentE@Base 1.1 _ZNK20StripedSmithWaterman7Aligner5AlignEPKcS2_RKiRKNS_6FilterEPNS_9AlignmentE@Base 1.1 - (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 1.1 +#MISSING: 1.1-15# (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 1.1 align_destroy@Base 1.1 init_destroy@Base 1.1 mark_mismatch@Base 1.1 dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libssw0' in '../libssw0_1.1-15_arm64.deb'. dpkg-deb: building package 'ssw-align' in '../ssw-align_1.1-15_arm64.deb'. dpkg-deb: building package 'libssw0-dbgsym' in '../libssw0-dbgsym_1.1-15_arm64.deb'. dpkg-deb: building package 'libssw-dev' in '../libssw-dev_1.1-15_arm64.deb'. dpkg-deb: building package 'libssw-java-dbgsym' in '../libssw-java-dbgsym_1.1-15_arm64.deb'. dpkg-deb: building package 'libssw-java' in '../libssw-java_1.1-15_arm64.deb'. dpkg-deb: building package 'ssw-align-dbgsym' in '../ssw-align-dbgsym_1.1-15_arm64.deb'. dpkg-genbuildinfo --build=binary -O../libssw_1.1-15_arm64.buildinfo dpkg-genchanges --build=binary -O../libssw_1.1-15_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/63854 and its subdirectories I: Current time: Fri Feb 21 19:08:14 -12 2025 I: pbuilder-time-stamp: 1740208094 Sat Feb 22 07:08:16 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Sat Feb 22 07:08:16 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Sat Feb 22 07:08:16 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Sat Feb 22 07:08:16 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-NfEhpo' ==================================================================================== Fri Mar 27 13:31:17 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "2 libssw unstable /srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o 1.1-15" as arguments. Fri Mar 27 13:31:17 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-vqRc6GKv" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Mar 27 13:31:17 UTC 2026 I: Downloading source for unstable/libssw=1.1-15 Reading package lists... NOTICE: 'libssw' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libssw.git Please use: git clone https://salsa.debian.org/med-team/libssw.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 12.4 MB of source archives. Get:1 http://deb.debian.org/debian unstable/main libssw 1.1-15 (dsc) [2509 B] Get:2 http://deb.debian.org/debian unstable/main libssw 1.1-15 (tar) [12.3 MB] Get:3 http://deb.debian.org/debian unstable/main libssw 1.1-15 (diff) [54.3 kB] Fetched 12.4 MB in 0s (119 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'libssw' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libssw.git Please use: git clone https://salsa.debian.org/med-team/libssw.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 12.4 MB of source archives. Get:1 http://deb.debian.org/debian unstable/main libssw 1.1-15 (dsc) [2509 B] Get:2 http://deb.debian.org/debian unstable/main libssw 1.1-15 (tar) [12.3 MB] Get:3 http://deb.debian.org/debian unstable/main libssw 1.1-15 (diff) [54.3 kB] Fetched 12.4 MB in 0s (119 MB/s) Download complete and in download only mode ============================================================================= Re-Building libssw in unstable on arm64 on codethink03-arm64 now. Date: Fri Mar 27 13:31:18 GMT 2026 Date UTC: Fri Mar 27 13:31:18 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o/pbuilderrc_tTb1 + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' libssw = debian-installer -o libssw = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' libssw = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o/pbuilderrc_tTb1 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o/b2 --logfile b2/build.log libssw_1.1-15.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sat Mar 28 03:31:18 +14 2026 I: pbuilder-time-stamp: 1774618278 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libssw_1.1-15.dsc] I: copying [./libssw_1.1.orig.tar.gz] I: copying [./libssw_1.1-15.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libssw_1.1-15.dsc: unsupported subcommand dpkg-source: info: extracting libssw in libssw-1.1 dpkg-source: info: unpacking libssw_1.1.orig.tar.gz dpkg-source: info: unpacking libssw_1.1-15.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying build_all_libs.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying rename_tool.patch dpkg-source: info: applying simde.patch dpkg-source: info: applying malloc I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/784793/tmp/hooks/D01_modify_environment starting debug: Running on codethink03-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Mar 27 13:31 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/784793/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/784793/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=b495033bbdd44e40bbb63cfde4a27cdc LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=784793 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o/pbuilderrc_tTb1 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o/b2 --logfile b2/build.log libssw_1.1-15.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/784793/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~), debhelper-compat (= 13), default-jdk-headless, javahelper, help2man, zlib1g-dev, libsimde-dev, maven-repo-helper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19889 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on default-jdk-headless; however: Package default-jdk-headless is not installed. pbuilder-satisfydepends-dummy depends on javahelper; however: Package javahelper is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on maven-repo-helper; however: Package maven-repo-helper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} binfmt-support{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} dctrl-tools{a} debhelper{a} default-jdk-headless{a} default-jre-headless{a} devscripts{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dirmngr{a} dwz{a} fastjar{a} file{a} gettext{a} gettext-base{a} gnupg{a} gnupg-l10n{a} gpg{a} gpg-agent{a} gpgconf{a} gpgsm{a} gpgv{a} groff-base{a} help2man{a} intltool-debian{a} jarwrapper{a} java-common{a} javahelper{a} libarchive-zip-perl{a} libassuan9{a} libb-hooks-op-check-perl{a} libclass-method-modifiers-perl{a} libclass-xsaccessor-perl{a} libclone-perl{a} libdebhelper-perl{a} libdevel-callchecker-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libexpat1{a} libffi8{a} libfile-dirlist-perl{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-touch-perl{a} libfile-which-perl{a} libgcrypt20{a} libgnutls30t64{a} libgpg-error0{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libidn2-0{a} libimport-into-perl{a} libio-html-perl{a} libio-pty-perl{a} libio-socket-ssl-perl{a} libipc-run-perl{a} libjpeg62-turbo{a} libksba8{a} liblcms2-2{a} libldap2{a} liblocale-gettext-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libmodule-runtime-perl{a} libmoo-perl{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnpth0t64{a} libnspr4{a} libnss3{a} libp11-kit0{a} libparams-classify-perl{a} libpcsclite1{a} libpipeline1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librole-tiny-perl{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libsub-quote-perl{a} libtasn1-6{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml2{a} m4{a} man-db{a} maven-repo-helper{a} media-types{a} netbase{a} openjdk-21-jdk-headless{a} openjdk-21-jre-headless{a} openssl{a} patchutils{a} perl-openssl-defaults{a} pinentry-curses{a} po-debconf{a} python3{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sopv-gpgv{a} tzdata{a} wdiff{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl debian-keyring dput dput-ng dupload equivs gnupg-utils gpg-wks-client libarchive-cpio-perl libasound2t64 libcups2t64 libdata-dump-perl libdistro-info-perl libfontconfig1 libfreetype6 libgit-wrapper-perl libgitlab-api-v4-perl libgpg-error-l10n libharfbuzz0b libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libio-compress-brotli-perl libjson-perl libldap-common liblist-compare-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libnamespace-clean-perl liboss4-salsa-asound2 libsasl2-modules libsoap-lite-perl libstring-shellquote-perl libxstring-perl licensecheck lintian lynx lzip pristine-tar python3-apt python3-argcomplete python3-debian python3-magic python3-requests python3-unidiff python3-xdg strace unzip wget 0 packages upgraded, 131 newly installed, 0 to remove and 0 not upgraded. Need to get 163 MB of archives. After unpacking 459 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 binfmt-support arm64 2.2.2-7+b1 [68.2 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-7+b1 [15.2 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.2-1 [853 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.2-1 [1997 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.1-2 [27.0 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 media-types all 11.0.0 [27.6 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025a-2 [259 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.2-1 [1914 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.2-1 [745 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.1-2 [9952 B] Get: 17 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.1-2 [28.0 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.4.1-1 [1390 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20241223 [164 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-4 [92.1 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-3 [862 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 ca-certificates-java all 20240118 [11.6 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 dctrl-tools arm64 2.24-3+b1 [125 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-3 [539 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 42 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 java-common all 0.76 [6776 B] Get: 52 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libnspr4 arm64 2:4.36-1 [102 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libnss3 arm64 2:3.108-1 [1293 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libpcsclite1 arm64 2.3.1-1 [55.3 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 openjdk-21-jre-headless arm64 21.0.6+7-1 [40.6 MB] Get: 58 http://deb.debian.org/debian unstable/main arm64 default-jre-headless arm64 2:1.21-76 [3192 B] Get: 59 http://deb.debian.org/debian unstable/main arm64 openjdk-21-jdk-headless arm64 21.0.6+7-1 [81.9 MB] Get: 60 http://deb.debian.org/debian unstable/main arm64 default-jdk-headless arm64 2:1.21-76 [1124 B] Get: 61 http://deb.debian.org/debian unstable/main arm64 libgpg-error0 arm64 1.51-3 [78.5 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libassuan9 arm64 3.0.1-2 [58.1 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libgcrypt20 arm64 1.11.0-7 [742 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 gpgconf arm64 2.2.46-1+b1 [115 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libksba8 arm64 1.6.7-2+b1 [125 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 libnpth0t64 arm64 1.8-2 [22.8 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 dirmngr arm64 2.2.46-1+b1 [344 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 gnupg-l10n all 2.2.46-1 [702 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 gpg arm64 2.2.46-1+b1 [481 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 pinentry-curses arm64 1.3.1-2 [83.5 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 gpg-agent arm64 2.2.46-1+b1 [231 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 gpgsm arm64 2.2.46-1+b1 [232 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 gnupg all 2.2.46-1 [376 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 gpgv arm64 2.2.46-1+b1 [200 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 sopv-gpgv all 0.1.1-1 [10.7 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 libfile-dirlist-perl all 0.05-3 [7600 B] Get: 84 http://deb.debian.org/debian unstable/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libfile-touch-perl all 0.12-2 [8816 B] Get: 87 http://deb.debian.org/debian unstable/main arm64 libio-pty-perl arm64 1:1.20-1+b2 [34.0 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libipc-run-perl all 20231003.0-2 [101 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libclass-xsaccessor-perl arm64 1.19-4+b5 [34.9 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b2 [10.6 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libdevel-callchecker-perl arm64 0.009-1+b1 [16.3 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libparams-classify-perl arm64 0.015-2+b4 [22.3 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 libimport-into-perl all 1.002005-2 [11.3 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libmoo-perl all 2.005005-1 [58.0 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 liburi-perl all 5.30-1 [105 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libhtml-parser-perl arm64 3.83-1+b2 [97.5 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B] Get: 115 http://deb.debian.org/debian unstable/main arm64 libnet-ssleay-perl arm64 1.94-3 [323 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 libnet-http-perl all 6.23-1 [23.9 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 libwww-perl all 6.77-1 [183 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 patchutils arm64 0.4.2-1+b1 [71.3 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 wdiff arm64 1.2.2-7 [121 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 devscripts all 2.25.3 [1058 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 fastjar arm64 2:0.98-7+b1 [74.9 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 help2man arm64 1.49.3+b1 [198 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 jarwrapper all 0.80 [9692 B] Get: 128 http://deb.debian.org/debian unstable/main arm64 javahelper all 0.80 [80.4 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 libsimde-dev all 0.8.2-2 [467 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 maven-repo-helper all 1.11 [142 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 163 MB in 1s (179 MB/s) Preconfiguring packages ... Selecting previously unselected package libpipeline1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19889 files and directories currently installed.) Preparing to unpack .../0-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package binfmt-support. Preparing to unpack .../1-binfmt-support_2.2.2-7+b1_arm64.deb ... Unpacking binfmt-support (2.2.2-7+b1) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../2-liblocale-gettext-perl_1.07-7+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../3-libpython3.13-minimal_3.13.2-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.2-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../4-libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../5-python3.13-minimal_3.13.2-1_arm64.deb ... Unpacking python3.13-minimal (3.13.2-1) ... Setting up libpython3.13-minimal:arm64 (3.13.2-1) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.13-minimal (3.13.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20262 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.1-2_arm64.deb ... Unpacking python3-minimal (3.13.1-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_11.0.0_all.deb ... Unpacking media-types (11.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025a-2_all.deb ... Unpacking tzdata (2025a-2) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.4.7-1_arm64.deb ... Unpacking libffi8:arm64 (3.4.7-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.2-6_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_arm64.deb ... Unpacking python3.13 (3.13.2-1) ... 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Setting up libclone-perl:arm64 (0.47-1+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up perl-openssl-defaults:arm64 (7+b2) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libgcrypt20:arm64 (1.11.0-7) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8+b1) ... Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Mar 27 13:31:42 UTC 2026. Universal Time is now: Fri Mar 27 13:31:42 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Setting up libnspr4:arm64 (2:4.36-1) ... Setting up gnupg-l10n (2.2.46-1) ... Setting up libunistring5:arm64 (1.3-1) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.23.1-1) ... Setting up binfmt-support (2.2.2-7+b1) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libb-hooks-op-check-perl:arm64 (0.22-3+b2) ... Setting up libipc-run-perl (20231003.0-2) ... Setting up libpcsclite1:arm64 (2.3.1-1) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8+b1) ... Setting up autoconf (2.72-3) ... Setting up libtimedate-perl (2.3300-2) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up gpgv (2.2.46-1+b1) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libassuan9:arm64 (3.0.1-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up netbase (6.4) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b5) ... Setting up libfile-dirlist-perl (0.05-3) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up openssl (3.4.1-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libldap2:arm64 (2.6.9+dfsg-1) ... Setting up liburi-perl (5.30-1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up libfile-touch-perl (0.12-2) ... Setting up dctrl-tools (2.24-3+b1) ... Setting up libnet-ssleay-perl:arm64 (1.94-3) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libksba8:arm64 (1.6.7-2+b1) ... Setting up pinentry-curses (1.3.1-2) ... Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.23.1-1) ... Setting up libfile-listing-perl (6.16-1) ... Setting up jarwrapper (0.80) ... Setting up libtool (2.5.4-3) ... Setting up libnet-http-perl (6.23-1) ... Setting up libidn2-0:arm64 (2.3.7-2+b1) ... Setting up libnss3:arm64 (2:3.108-1) ... Setting up libdevel-callchecker-perl:arm64 (0.009-1+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3+b1) ... Setting up dh-autoreconf (20) ... Setting up patchutils (0.4.2-1+b1) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-7) ... Setting up libhtml-parser-perl:arm64 (3.83-1+b2) ... Setting up gpgconf (2.2.46-1+b1) ... Setting up ca-certificates-java (20240118) ... No JRE found. Skipping Java certificates setup. Setting up libpython3.13-stdlib:arm64 (3.13.2-1) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up gpg (2.2.46-1+b1) ... Setting up libpython3-stdlib:arm64 (3.13.1-2) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libgnutls30t64:arm64 (3.8.9-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up gpg-agent (2.2.46-1+b1) ... Setting up openjdk-21-jre-headless:arm64 (21.0.6+7-1) ... update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libhttp-cookies-perl (6.11-1) ... Setting up python3.13 (3.13.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:arm64 (0.015-2+b4) ... Setting up gpgsm (2.2.46-1+b1) ... Setting up python3 (3.13.1-2) ... Setting up sopv-gpgv (0.1.1-1) ... update-alternatives: using /usr/bin/sopv-gpgv to provide /usr/bin/sopv (sopv) in auto mode Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up dirmngr (2.2.46-1+b1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up gnupg (2.2.46-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up debhelper (13.24.1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.77-1) ... Setting up devscripts (2.25.3) ... Setting up javahelper (0.80) ... Processing triggers for libc-bin (2.40-7) ... Processing triggers for ca-certificates-java (20240118) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:BJCA_Global_Root_CA1.pem Adding debian:BJCA_Global_Root_CA2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:CommScope_Public_Trust_ECC_Root-01.pem Adding debian:CommScope_Public_Trust_ECC_Root-02.pem Adding debian:CommScope_Public_Trust_RSA_Root-01.pem Adding debian:CommScope_Public_Trust_RSA_Root-02.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureSign_Root_CA12.pem Adding debian:SecureSign_Root_CA14.pem Adding debian:SecureSign_Root_CA15.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_CYBER_Root_CA.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustAsia_Global_Root_CA_G3.pem Adding debian:TrustAsia_Global_Root_CA_G4.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up openjdk-21-jdk-headless:arm64 (21.0.6+7-1) ... update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jwebserver to provide /usr/bin/jwebserver (jwebserver) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up default-jre-headless (2:1.21-76) ... Setting up maven-repo-helper (1.11) ... Setting up default-jdk-headless (2:1.21-76) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20240118) ... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/784793/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/784793/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/libssw-1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libssw_1.1-15_source.changes dpkg-buildpackage: info: source package libssw dpkg-buildpackage: info: source version 1.1-15 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with javahelper --with jh_maven_repo_helper debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/libssw-1.1' rm -f debian/libssw*install debian/libssw*links debian/ssw-align.1 dh_auto_clean --sourcedirectory src cd src && make -j12 clean make[2]: Entering directory '/build/reproducible-path/libssw-1.1/src' rm -f ssw.o ssw_cpp.o ssw-align libssw.so.0 example_c example_cpp libsswjni.so *.jar ssw/Aligner.class ssw/Alignment.class *~ libssw.a make[2]: Leaving directory '/build/reproducible-path/libssw-1.1/src' make[1]: Leaving directory '/build/reproducible-path/libssw-1.1' jh_clean Duplicate specification "u=s" for option "u" dh_clean debian/rules binary dh binary --with javahelper --with jh_maven_repo_helper dh_update_autotools_config dh_autoreconf jh_linkjars debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/libssw-1.1' dh_auto_build --sourcedirectory src -- default java cd src && make -j12 "INSTALL=install --strip-program=true" default java make[2]: Entering directory '/build/reproducible-path/libssw-1.1/src' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libssw-1.1=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -shared -rdynamic -Wl,-soname,libssw.so.0 -o libssw.so.0 ssw.c ssw.h ssw_cpp.h ssw_cpp.cpp -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now cc -c -o ssw.o ssw.c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libssw-1.1=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 g++ -c -o ssw_cpp.o ssw_cpp.cpp -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libssw-1.1=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 javac ssw/Aligner.java javac ssw/Alignment.java cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libssw-1.1=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -I"/include" -I"/include/linux" -I/usr/lib/jvm/default-java/include/ -I/usr/lib/jvm/default-java/include/linux -fPIC -shared -rdynamic -o libsswjni.so sswjni.c ssw.c -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now jar cvf ssw.jar ssw/Aligner.class ssw/Alignment.class added manifest adding: ssw/Aligner.class(in = 2486) (out= 1527)(deflated 38%) adding: ssw/Alignment.class(in = 1029) (out= 602)(deflated 41%) ar rcs libssw.a ssw.o ssw_cpp.o cc -o example_c ssw.o example.c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libssw-1.1=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now g++ -o example_cpp example.cpp ssw.o ssw_cpp.o -g -O2 -ffile-prefix-map=/build/reproducible-path/libssw-1.1=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libssw-1.1=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -o ssw-align main.c kseq.h -L. -lssw -lm -lz -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/libssw-1.1/src' make[1]: Leaving directory '/build/reproducible-path/libssw-1.1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libssw-1.1' LD_PRELOAD="$LD_PRELOAD /build/reproducible-path/libssw-1.1/src/libssw.so" src/ssw-align -c demo/ref.fa demo/1k.fa ERROR: ld.so: object '/build/reproducible-path/libssw-1.1/src/libssw.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. target_name: chr1 query_name: chr1 optimal_alignment_score: 2002 suboptimal_alignment_score: 1000 strand: + target_begin: 1 target_end: 1001 query_begin: 1 query_end: 1001 Target: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 Target: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 Target: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 Target: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 Target: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 Target: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 Target: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 Target: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 Target: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 Target: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 Target: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 Target: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 Target: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 Target: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 Target: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 Target: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 Target: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 ||||||||||||||||||||||||||||||||||||||||| Query: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 target_name: chr2 query_name: chr1 optimal_alignment_score: 312 suboptimal_alignment_score: 311 strand: + target_begin: 4437430 target_end: 4438470 query_begin: 9 query_end: 971 Target: 4437430 TTGAT-TCCACAGATTCCAATAGAATAGTTTGAAGATGGAACAATTGAGAATTCTGAATG 4437488 ||*|| *|||| || | |||| ||||*|**||| |**||*|*| ||**||| ||| Query: 9 TTAATCGCCAC-GA--C--ATAG--TAGTATTTAGA-GTTACTAGT---AAGCCTG-ATG 56 Target: 4437489 ---CTAAGCTAAT--TAGATATGTTTTCTTTGAAGGAAAACTACATTGTATTATTTTGCC 4437543 |||**| ||| |||*| | ||*||||| |||| | *|||||*|*|||**| Query: 57 CCACTACAC-AATTCTAGCT-T-TTCTCTTT--AGGA----T-GATTGTTTCATTCAG-- 104 Target: 4437544 TCCTCCCTCCTCCTAGAAGCCTT----TAAAATTCATGCATCATTTTAAAAGTTTTGAAA 4437599 ||*|**|| ||**|||||**|*| *|||||| || *|*||**||||| ||| || Query: 105 TCTTATCT-CTTTTAGAAAACATAGGAAAAAATT-AT--TTAATAATAAAA-TTT--AA- 156 Target: 4437600 TTTTTCAAGATTATGTTTAA-GTAT--ATTA-AATATTTTGTTCAGTCATCCCAATTAGT 4437655 ||**||| | ||| || |||| *||| ||*| *|||| |*||*||| || Query: 157 -TTGGCAA-A--ATG---AAGGTATGGCTTATAAGA--GTGTT------TTCCTATT-GT 200 Target: 4437656 TTTCAATG--G----CCCT-TTCCATTTAAAGAGTTTGGACATTCCATATAAAAAAG-AC 4437707 |||||*|| | |*|| ||| ||||*|**|*||||| *||| |**|****| |* Query: 201 TTTCAGTGTAGGACTCACTGTTC----TAAATAACTGGGACA-CCCA-AGGATTCTGTAA 254 Target: 4437708 AATGTCATCTACA-TTTTC-TTTGTTTT--CT---T---AATT-AT----ATCTTTTCCT 4437752 ||||*|||| || ||*|| |||*|*|| || | |||| || ||*|*|||*| Query: 255 AATGCCATC--CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCACATGTATTCAT 312 Target: 4437753 TTTTACAAATTTCTTAA-AAA-TAG-GTGTAAGATCTCTGATTTAACCTATGTGCGT--- 4437806 ||| |||||*|| ||| ||| *||| |||**|||| *||||**|*|| ||*| Query: 313 TTT------TTTCTAAACAAATTAGCATGT-AGAATTCTG-GTTAAAATTTG-GCATAGA 363 Target: 4437807 -C------TTAATTTTTCA----GCTTC---T--CTGTCATT---TTATT-AGATGTTTT 4437846 | *||*||||||| ||**| | |||||||| |*||| ||| Query: 364 ACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGA------ 417 Target: 4437847 TATTGT-TTTTAA------TTACTAAATTAATCTTAATCTATG-CTTATTATATCATTCT 4437898 ||*|| *||||| *||*||||*|*|| **||*|*||| |**|**|*|||**||| Query: 418 -ATGGTGATTTAACAAAGGATAATAAAGTTAT-GAAACCAATGCCACAAAACATCTGTCT 475 Target: 4437899 CCATTAC--GT-TATGGATACAACAACT-TG-GTGAATGTTTCTG----AGATTAACACT 4437949 | |*|| || |*||**| *| || |||**|||*|*|| |||***|*|** Query: 476 C--TAACTGGTGTGTGTGT-------GTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGA 526 Target: 4437950 AAAAATATTTAACAATCTCTCTCATTTTTATC----TTTTC-TTTCTTTTTCTCTTTGTC 4438004 *|*||*|||| ||*||*||| |||***|*|| |*||| |||||||||| |||| *| Query: 527 GAGAAAATTT--CACTCCCTC-CATAAATCTCACAGTATTCTTTTCTTTTTC-CTTT-CC 581 Target: 4438005 TTT-CTCACTCTCTATTTATCCTGTTACATCTTTGCTTCTATCTCTTTCTCTGTTTTTTT 4438063 ||| ||**|||| |*|||*| ||**|| |||||| || ||||| *|||**|| Query: 582 TTTCCTTGCTCT-TCTTTCT-CTCCTA-----TTGCTT---TC-CTTTC---ATTTCCTT 627 Target: 4438064 TTTTTAATATTTAAATAATGCTTCTGTCTGAGGAGGTTAAGAAGTGAAAGAAGACATTGT 4438123 *|**|||*|***|||||| |**|*| || || || | ||*||*|*|| Query: 628 CTCATAAAAGAAAAATAA-----CAATAT-AG------AA-AA-T--AACAAAATAT--- 668 Target: 4438124 GAGATGGAGAATCTTTATTAAGATAGAAG---AC--AAAGAGGGGATGAT-----GTGGA 4438173 ||||||**||*|||| ||||*|| *||| || ||| |*|**||*|| |||| Query: 669 -AGATGGTCAACCTTT-TTAATAT-TAAGGTTACCTAAA-ATGCCATTATCCAAAGTGG- 723 Target: 4438174 CACTT-TC-AG-GATG-TGGAATGGT---TACATACATTATT---CTGT-TA-TCACAAG 4438221 || || || |||| || || || |||*|||| |||| |*|| || ||| || Query: 724 ---TTCTCTAGAGATGCTG--AT-GTATATACTTACA-TATTTTACAGTGTATTCA-AA- 774 Target: 4438222 GTTAGCTAA-ACTCTCTTTCATAA-A-ATCTCTCTTGTTTCTTACTCCCTAAATCTCAAA 4438278 || || |*|*|*||*||||| | ||*|| || |||*|*|| | || || Query: 775 --TA---AAGAGTATATTACATAAGACATATC-CT--TTTGTAAC-C---AA--CT---- 816 Target: 4438279 TAAGTGACTAAAAAATGCCTGGA--TGACCCCAAACAGTAAGAATAGCTTGTA-GGTCTC 4438335 |**||*|*|||*||*|**||||| ||*|**||||| *|| ||| | |||| *||||* Query: 817 TTTGTCATTAACAATTTACTGGACTTGTCAACAAAC-CTA--AAT--C-TGTATCGTCTA 870 Target: 4438336 TGAAG---ATGTTATCTTTTGCCCTGGGAAGGTGGATTCCTATACTAACACCTGCACTTG 4438392 |*|*| |*|| ||*||| |||*| ||*|| || ||*|*||*||| || Query: 871 TAATGGCTACGT--TCATTT----TGGTA---TGAAT--CT-TAATTACCCCT----TT- 913 Target: 4438393 AAAAGGTGAACAAGATAATTTTGTATTTATTTTCTCACTA--CCACTGCAGGTAGCATGG 4438450 *|| | ||*||| ||*|*||||||||| || *|||| | *|| *||| Query: 914 -----CTG--C---ATTATT---TAATGATTTTCTCA-TATGTCACT-C--TTA-AATG- 954 Target: 4438451 GACACTTCTTTATTATTCAC 4438470 *||||| |*|||*||||| Query: 955 --TACTTC-TAATTTTTCAC 971 target_name: chr3 query_name: chr1 optimal_alignment_score: 291 suboptimal_alignment_score: 289 strand: + target_begin: 680970 target_end: 682002 query_begin: 9 query_end: 998 Target: 680970 TTAAATTGTCA--ACATGGTA-TATATGAAATGAATTGGGTTTATAATAGTAAACCAATC 681026 || |||*|*|| ||||*||| ||| |*| || || ||*||||||*|| |* Query: 9 TT-AATCGCCACGACATAGTAGTAT-TTA---GA-----GT---TACTAGTAAGCC--TG 53 Target: 681027 TTG-CATTCCTAAAA---TA--AATCCTATTTAG--TTATCGT--------GTGTTATTT 681070 *|| ||*|*| |*|| || **|*||*||||| |*||*|| ||*||| |* Query: 54 ATGCCACTAC-ACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTA-TC 111 Target: 681071 TCTT----AATACAGTGTTGGATTAAGTTTGCTATTTTTTATTTTAAAATTTTACATTAT 681126 |||| ||*||| |*|||**||*| || |||*||**||||| |||| || Query: 112 TCTTTTAGAAAACA---TAGGAAAAAAT----TA--TTTAATAATAAAA-TTTA----AT 157 Target: 681127 TTTCTTCAGTGA---TATTGACCTGT---AGTTTTCTTTCATTATACTGTTTTATCAGAT 681180 |**| **|*||| || ||*|*|*| |||*| |||| *||| ||||| |||| | Query: 158 TGGC-AAAATGAAGGTA-TGGCTTATAAGAGTGT--TTTC-CTAT--TGTTT--TCAG-T 207 Target: 681181 TTAGGTATCAGTGTTAT-AGTTTCT---TCATGAAAGGAAT---TAAGATGTTTTCCTTC 681233 *||||**|||*||||*| |*|**|| *||***|||||*| |||*||| ||*|| Query: 208 GTAGGACTCACTGTTCTAAATAACTGGGACACCCAAGGATTCTGTAAAATG----CCATC 263 Target: 681234 C-CTT-TCA---ATGTT------CTGAATAATCATACAGCAT-TA-TGACTATCTGCCAT 681280 | *|| ||| ||*|| ||*||*|*||||*|| ||| || |*|*|*|*| | Query: 264 CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCA-CATGTATTCATTTTTT----T 318 Target: 681281 TTAAATC--TTTAGAAT----AATTACCTTGTGAAACTATGTGGGCTTGGTGCTATTTTG 681334 *|||| | *||||*|| |||| ||*||*||| || |*|||*|*|**| | ***| Query: 319 CTAAA-CAAATTAGCATGTAGAATT--CTGGTTAAA--AT-TTGGCATAGAAC-A-CCCG 370 Target: 681335 TGTAGTATTTATC-TAATTGTTTCCTATA--TTTC-TT--CTA--TGAAATTGGTTGATT 681386 *||| | |||*|| ||| ||***||*||| |*|| || ||| |||*|*||| ||||| Query: 371 GGTA-T-TTTTTCATAA-TGCACCCAATAACTGTCATTCACTAATTGAGAATGG-TGATT 426 Target: 681387 TAATCTTTCTAACACTAATAAGATTAATTTGAGTAAACTTCATTTCTCTAGAAAATAATT 681446 ||| |*||***||||||**||| || |||| ||*|*| | |*||||*| | Query: 427 TAA-----CAAAGGATAATAAAGTTA---TG---AAAC--CAATGC-C-ACAAAACA--T 469 Target: 681447 AATTCATCAAATTAAATCAAATTTGAAATTTGATTTCAAATTTATTTGTGTCAAAGTAA- 681505 ***|| || |||*|****|*|| |*|| |*| *|*|*|*|||||****|||| Query: 470 CTGTC-TC----TAACTGGTGTGTG---TGTG-TGT---GTGTGTGTGTGTGTGTGTAAG 517 Target: 681506 A-GGAG-G--------TTTC-CT--GT-CATTTTAAAATTCTC----TGTTGTTTTAATA 681547 | |||| | |||| || *| || |||| |||| |*||*|||| *|* Query: 518 AGGGAGAGAGAGAAAATTTCACTCCCTCCA---TAAA--TCTCACAGTATTCTTTT-CTT 571 Target: 681548 GTAACTT--GTTT-CTTATTATTTATAACTTTAT---ATATT--TGTACTT---TTTCCT 681596 *|**||| *||| |||**|*|| ||||*| *|||| |*|*||| ||||| Query: 572 TTTCCTTTCCTTTCCTTGCTCTT-----CTTTCTCTCCTATTGCTTTCCTTTCATTTCC- 625 Target: 681597 TTTTTATCAAATG--AACT--GAGTTT------TAAC-----ATCGCAT--TTAA---TT 681636 ||*|*|| |||*| ||*| *|*|*| |||| ||*| || |*|| || Query: 626 TTCTCAT-AAAAGAAAAATAACAATATAGAAAATAACAAAATATAG-ATGGTCAACCTTT 683 Target: 681637 TTAATTATCTAATCTAAATCTAAAAGCTGATATTTGATTCAA-----TTGTC-AGAAATC 681690 |||| ||| |||**| *|*|||||| ||**||| ||*||| ||*|| |||*|| Query: 684 TTAA-TAT-TAAGGT-TACCTAAAA--TGCCATT--ATCCAAAGTGGTTCTCTAGAGAT- 735 Target: 681691 TCTTAAGTATATTGGGATCAACTTGGAAAAGTAAATTGACTTTAAACAGTACACTT--TA 681748 *||*|*|||||| |||| |*| | ||| || |||||**| || *| Query: 736 GCTGATGTATAT--------ACTT--ACA--T--ATT---TT---ACAGTGTA-TTCAAA 774 Target: 681749 TGAACTTTAAATTACAGATCAGATAT--TTTTAGTAA--AA-TTTTATCCAAACTAAGAT 681803 |*||***||*||||||*|**|*|||| |||| |||| || ||||*|| |*||| Query: 775 TAAAGAGTATATTACATAAGACATATCCTTTT-GTAACCAACTTTTGTC---ATTAA--- 827 Target: 681804 GCAATATGAGTATAATCACTGATTCAA-AAAGCTTCCTTTAGTGAGCATGAAATATC-TC 681861 |||| |*|*|**|*| || |||| ||| || || *|*| || |||| | Query: 828 -CAAT-TTACTGGACT---TG--TCAACAAA----CC--TA--AATC-TG---TATCGT- 867 Target: 681862 ACTATTTTAAT---T---TTAATATTGATTGTGTGTTAAAATAATAATAATTGCATTAT- 681914 ||| |||| | ||*||*||| ||*|| |||**||||*|***|*||*| Query: 868 -CTA---TAATGGCTACGTTCATTTTG---GTATG----AATCTTAATTACCCCTTTCTG 916 Target: 681915 -ATTATTGATAATGTGTATTCTTGTCATGTTTCCATTCTTACTGGAAATG--CCTCCAGT 681971 |||||| ||||| ||| ||*||||*|*| ||*|||| ||||| |*||*|*| Query: 917 CATTATT--TAATG---ATT-TTCTCATATGT-CACTCTT-----AAATGTACTTCTAAT 964 Target: 681972 GTTTC----TCCATCAAATAGTAT-ACTGGCTCTAA 682002 *|||| |*|||||*||| || |*|||*||*|| Query: 965 TTTTCACTTTACATCACATA--ATGAATGGATCCAA 998 target_name: chr4 query_name: chr1 optimal_alignment_score: 280 suboptimal_alignment_score: 273 strand: + target_begin: 47000 target_end: 48059 query_begin: 2 query_end: 1001 Target: 47000 AAACATCTT-ATAGCTACTGGATTCTTTTTTGCCTATGTATTTA----TA-TATGT--G- 47050 |||||**|| ||*||*|| || | *|*| || ||||||| || || || | Query: 2 AAACAGGTTAATCGCCAC--GA--C---ATAG--TA-GTATTTAGAGTTACTA-GTAAGC 50 Target: 47051 CTGTAT----CTATGTAATGTCTA--TTTTTATAAAGCTCTAATTGACCTAGAGGAAAAT 47104 ||| || |||***||| |||| |||| |||| || ||| || Query: 51 CTG-ATGCCACTACACAAT-TCTAGCTTTT-------CTCT--TT-------AGG---AT 89 Target: 47105 GA--GTTT--TTGAATCAAATAT-TTTTTGAAGGGAAAGTAAAAACTGTGGTACATTGAA 47159 || |||| ||*|*||**||*| ||||*|||***|*||*||||| ||| | Query: 90 GATTGTTTCATTCAGTCTTATCTCTTTTAGAAAACATAGGAAAAA---------ATT-A- 138 Target: 47160 GTTCACATGACTAATCATTGAGAAATAAAAACAGACTTAGCAATTATTGGTAAAAAGCAG 47219 || |||| ||||||| || |*|||||*||||*|*|| Query: 139 -TT--------TAAT--------AATAAAA------TT-----TAATTGGCAAAATGAAG 170 Target: 47220 --ATG--TTAAAA-----TATAC--ATTTTTGTTCAGGGTTAAAGGA-T---TGTTCTGA 47264 ||| |||*|| |*|*| |||*|| |||||*|| |||| | ||||||*| Query: 171 GTATGGCTTATAAGAGTGTTTTCCTATTGTT-TTCAGTGT---AGGACTCACTGTTCTAA 226 Target: 47265 ATTA----GATA---A--GATAAAGCTAAAAGTTTAAACAAGTTATAA---AAAGTTTCT 47312 ||*| ||*| | |||***| ||||| |***|*|*||||||*| |*|*|**|| Query: 227 ATAACTGGGACACCCAAGGATTCTG-TAAAA-TGCCATCCAGTTATCATTTATATTCCCT 284 Target: 47313 A--T-AAAATTCATCTTGCCA-AAGAA---ATTTTGTCCATGAACATTAAATTACGAAAG 47365 | | ||||||||| | || |*|*| |||||*|*| |*||| |||||| |*|*| Query: 285 AACTCAAAATTCAT-T---CACATGTATTCATTTTTTTC-TAAAC---AAATTA-GCATG 335 Target: 47366 GTATTATATGTTTTTTTGGT--AAATTAAGCATTTAAATAATAGCACAACAAGGTA---- 47419 ||*| *||*|||| |||||**|| ||||*|||*|**|||| Query: 336 ----TAGA----ATTCTGGTTAAAATTTGGC---------ATAGAACACCCGGGTATTTT 378 Target: 47420 CTCTTAAGGCAC----TAATCTGCTCTTTAGCAAAATTTGTAAA--GTG--TTATAAACG 47471 *||*|||*|||| ||| ||| ||*|| ||**|*|||**|| ||| |||**||*| Query: 379 TTCATAATGCACCCAATAA-CTG-TCATT--CACTAATTGAGAATGGTGATTTAACAAAG 434 Target: 47472 GGTTTTACTTTTGTAAATTTTTTGAAACAATTGTGGCAAAA------TAAATAACATGGT 47525 | | |**|||| *||*||||||*|*||***||||| |***|||| |||| Query: 435 G-----A---TAATAAA-GTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC-TGGT 484 Target: 47526 AATCTG-GAAT-TCTATTTCATAACATCAAGTGT-TTTAA-------ACCTCTAACATTT 47575 *|*|| |**| |*|*|*| *| *| |||| |*||| |*****||*|||| Query: 485 -GTGTGTGTGTGTGTGTGT-GT---GT---GTGTGTGTAAGAGGGAGAGAGAGAAAATTT 536 Target: 47576 C-TTC---CCA-AAATCAAAC----TTCAGTTTCAAAATTGT--CTTTCCT---CGTGC- 47620 | *|| ||| |||||**|| ||| *|||| ||*| ||||||| |*||| Query: 537 CACTCCCTCCATAAATCTCACAGTATTC-TTTTC----TTTTTCCTTTCCTTTCCTTGCT 591 Target: 47621 CTGACTTT-TGAATGCTACAGAGGGC---CCCTGGAGTATCC-------AAAAGAGAGGT 47669 || *|||| | || |**|**|| ||*|**| |*||| ||||||*|**| Query: 592 CT-TCTTTCT-----CT-CCTATTGCTTTCCTTTCA-TTTCCTTCTCATAAAAGAAAAAT 643 Target: 47670 AAACTGGATTATTTGACATATTTAGTTACATGGGATTGCCAATCTTCTTTAGGTTATAT- 47728 ||| |*|||***|*|||***|**||*| |||*|*|||*||| |||| |||| Query: 644 -AAC---AATATAGAAAATAACAAAATATA---GATGGTCAACCTT-TTTA----ATATT 691 Target: 47729 -AGGTTA--TATTTTG--AT-----AAA-T-ATTCTATAGGTTATATTTTGATAAATGAT 47776 |||||| ||***|| || ||| | *||||*||| |*||**||||**|| || Query: 692 AAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTCTAG---AGATGCTGATGTAT-AT 747 Target: 47777 ACTAATATATGTTCCAAAATTGTATGAGATTTCTAATGTCTGAGTATATGCTATCAAAAT 47836 |||*|*||||*|| |*|*|||| |||*||| ***|||||||| || || Query: 748 ACTTACATATTTT---ACAGTGTA------TTCAAAT-AAAGAGTATAT--TA-CA---- 790 Target: 47837 TAAG--GTTT--TTATGT---TAAGTTATTGT-A--AAC----CACAGAGA-TT---ATC 47878 |||| *|*| ||*||| *||*|| |||| | ||| *||*| || || |*| Query: 791 TAAGACATATCCTTTTGTAACCAACTT-TTGTCATTAACAATTTACTG-GACTTGTCAAC 848 Target: 47879 AAACTTCTTTGTCAACTGTGTTTCTGACTATAA---CTACCCTGGACATTTTGTTATTCA 47935 |||| || ||*|*|||*|| |*|||||| |||| |**|||||||*||| Query: 849 AAAC--CT-----AAATCTGTATC-GTCTATAATGGCTAC---GTTCATTTTGGTAT--- 894 Target: 47936 AAGACAATTGTCTTGTTTAGATCCTTTTCAAGAGATAGTTTATAAGA--AGCTACAGAAC 47993 || | ||||**|| |*||*|||| *| *||**|||| |*|| **|| ||*| Query: 895 --GA-A----TCTTAATT--ACCCCTTTC-TG-CATTATTTA-ATGATTTTCT-CATA-- 939 Target: 47994 TGTGACAGGTGCTCTCAAATGCAGTTTTCCAA---ATAACTTTGGAGATCATGACAT--T 48048 ||| || ||||*|||||*| *|||*|| *|*||||| | |||*|||| | Query: 940 TGT--CA----CTCTTAAATGTA--CTTCTAATTTTTCACTTT--A---CATCACATAAT 986 Target: 48049 GAA---AT--AAAGTA 48059 ||| || ||| || Query: 987 GAATGGATCCAAA-TA 1001 target_name: chr5 query_name: chr1 optimal_alignment_score: 230 suboptimal_alignment_score: 199 strand: + target_begin: 8806 target_end: 9723 query_begin: 11 query_end: 974 Target: 8806 AATGGCCAGGGCACTGAGGAG-CTGTGGAAGAACTGGGGAAATCACCGAAACCCAGTAC- 8863 |||*||||*|*|| | ||*|| *|*|*||***||| *|*||*| |*| |**|||*||| Query: 11 AATCGCCACGACA-T-AGTAGTATTTAGAGTTACT--AGTAAGC-CTG-ATGCCACTACA 64 Target: 8864 CATTTCAGTGAGGCCATTCTC--CA--AAAACTCTCTC---CA-TCTTATTTCTT---G- 8911 ||*||| | | ||**||||| *| |**|*|*|*|| || ||||||*|||| | Query: 65 CAATTC--T-A-GCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 Target: 8912 ------GGGAAAGAGTTCTTCTACT--TACAATATGAT---CAACCTGA--TTAAG---A 8955 *|||||*|*||*|| ||*| ||*|||*|*|| |||**||| *||*| * Query: 121 AAACATAGGAAAAAATTATT-TAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTT 179 Target: 8956 AT-ATATTGGTTT-CTATAACTGTGATGCAGATTATAACTATACAAATGCCAATTACCAG 9013 || |*|*||*||| |||| ||| *|*|||**||**||| | |*|| || |*|* Query: 180 ATAAGAGTGTTTTCCTAT---TGT-TTTCAGTGTAGGACT---C-ACTG----TT-CTAA 226 Target: 9014 A-AGCTAAGCCACCC--TGATTC--CAAAAT---AT--AGTCTCACATTTCATGGTTTCC 9063 | |*||**|*||||| *||||| *||||| || ||| |**||||| || *|||| Query: 227 ATAACTGGGACACCCAAGGATTCTGTAAAATGCCATCCAGT-TATCATTT-AT--ATTCC 282 Target: 9064 TGGTA--TCAGAAATCCCTATGAGCCTG-A--GATTTTTTCCCTTAA-------AGCA-- 9109 *|| ||| ||||*|*| |*| |*|| | *|||||||*| ||| |||| Query: 283 --CTAACTCA-AAATTCAT-TCA-CATGTATTCATTTTTTTC--TAAACAAATTAGCATG 335 Target: 9110 ---AATACTG---AAGAT-----A-AGAA-ACC----AATTAATTTCATTGTTGC----- 9147 |||*||| ||*|| | |||| ||| *||| *||||| |**||| Query: 336 TAGAATTCTGGTTAAAATTTGGCATAGAACACCCGGGTATT-TTTTCA-TAATGCACCCA 393 Target: 9148 -TATCTTGT-AT---CCAATGGCATAA----AATCTATACTAACTTGATTAGAAA-TTCT 9197 ||*| ||| || |*|||*| |*|| *||*|| ||*|| *|||*|*||| ||*| Query: 394 ATAAC-TGTCATTCACTAATTG-AGAATGGTGATTTA-ACAAA--GGATAATAAAGTTAT 448 Target: 9198 G---CCAATG------AACAACT-T---TA--T--TGT-TTTGAGTGATG---------- 9229 | |||||| ||||*|| | || | ||| |*||*||| || Query: 449 GAAACCAATGCCACAAAACATCTGTCTCTAACTGGTGTGTGTGTGTG-TGTGTGTGTGTG 507 Target: 9230 -------AAGCCCCATTTGAGA-ATATAGGCTCAATGGCCTTGC-----TCT-----TA- 9270 |||****| |||| |*|*|***|||*| ||*|*| ||| || Query: 508 TGTGTGTAAGAGGGA---GAGAGAGAAAATTTCACT--CCCTCCATAAATCTCACAGTAT 562 Target: 9271 ACTGTTCTCTATGCAGTCACTTTCTTCTGCACTAAAGTGCCAATACAGATACTG-AATAC 9329 *||*||||*|*|*|**|| |||||*| |||*|| **|**|**|*| ||*|| **|*| Query: 563 TCTTTTCTTTTTCCTTTC-CTTTCCT-TGCTCT--TCTTTCTCTCC---TATTGCTTTCC 615 Target: 9330 ATTGATTTAAAT-ACATAGATATATAAATA--GATAT-TTAAATATGC--AATATATATG 9383 *||*||||***| *|||| |*|*|*||||| *|||| **||||| *| ||||||*||| Query: 616 TTTCATTTCCTTCTCATA-AAAGAAAAATAACAATATAGAAAATA-ACAAAATATAGATG 673 Target: 9384 G--ATAC---TTTATATATT--GATT---TAAA----CATTTTCC--------TCTCATA 9421 | | || |||| ||||| |*|| |||| ||||*||| |||| || Query: 674 GTCA-ACCTTTTTA-ATATTAAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTC-TA 730 Target: 9422 GA-----TGA--AAAATCACTCTAACATGTATTGATGGCTTCACA-AGAAATCATTTACA 9473 || ||| *|*|| ||| | ||| |||| || ||| *|*|*|||**||*| Query: 731 GAGATGCTGATGTATAT-ACT-T-ACA--TATT------TT-ACAGTGTATTCAAATAAA 778 Target: 9474 GAAAATAATTGCATATGATACAGT--GTTTGTGCCAAAATGTATTCATGGCTTTAAAAAC 9531 ||**|| |||*||||*||*|*| | *|||||**|*||*| CPU time: 4.030472 seconds || ||*|*||||*|| Query: 779 GAGTAT-ATTACATAAGACATA-TCCTTTTGTAACCAACT---TT--TGTCATTAACAA- 830 Target: 9532 TTCAGTGGAAATGTCTATTCAGATCCCTAGCCCATTGTTAAATTGGTTTCTGTTTTCTTG 9591 ||*|*||||**||||*| || |*|| |||||**||*|| | ||| Query: 831 TTTACTGGACTTGTCAA--CA-AACC------------TAAATCTGTATC-G---TCT-- 869 Target: 9592 CTAAGTTTGAGCTGC-TTATAGATGATGGATATTGACCCCTTATAGATGTTGGATATTGA 9650 *||| || |||*| || *||**||| || ||| ||*|| | ||| | Query: 870 ATAA---TG-GCTACGTT---CATTTTGG-TA-TGA----------ATCTT--A-ATT-A 906 Target: 9651 CCCC-TTGTGGATGTATGGCCGGTGCTTTTCCCAGTATTTAGGTCATCTCTGCA---CAC 9706 |||| ||*||*|| ||| ****||*|||||*|| ||| |||| ||||**| *|| Query: 907 CCCCTTTCTGCAT-TAT--TTAATGATTTTCTCA-TAT----GTCA-CTCTTAAATGTAC 957 Target: 9707 TGTTGATTGTTTC-CTTT 9723 |**|*||| |||| |||| Query: 958 TTCTAATT-TTTCACTTT 974 make[1]: Leaving directory '/build/reproducible-path/libssw-1.1' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/libssw-1.1' sed 's/@DEB_HOST_MULTIARCH@/aarch64-linux-gnu/g' debian/libssw0.install.in > debian/libssw0.install sed 's/@DEB_HOST_MULTIARCH@/aarch64-linux-gnu/g' debian/libssw-dev.install.in > debian/libssw-dev.install sed -e 's/@DEB_HOST_MULTIARCH@/aarch64-linux-gnu/g' \ -e 's/@DEB_JAVA_PKG_VERSION@/1.1/g' debian/libssw-dev.links.in > debian/libssw-dev.links sed 's/@DEB_HOST_MULTIARCH@/aarch64-linux-gnu/g' debian/libssw-java.install.in > debian/libssw-java.install sed -e 's/@DEB_HOST_MULTIARCH@/aarch64-linux-gnu/g' \ -e 's/@DEB_JAVA_PKG_VERSION@/1.1/g' debian/libssw-java.links.in > debian/libssw-java.links mv src/ssw.jar src/ssw-1.1.jar dh_auto_install make[1]: Leaving directory '/build/reproducible-path/libssw-1.1' dh_install jh_installjavadoc dh_installdocs dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/libssw-1.1' LD_LIBRARY_PATH=`pwd`/src help2man --version-string=' ' --help-option=' ' \ -I debian/extra-man-info.txt \ -N -n 'fast Smith-Waterman aligner' \ --no-discard-stderr src/ssw-align \ | fgrep -v ERROR > debian/ssw-align.1 dh_installman make[1]: Leaving directory '/build/reproducible-path/libssw-1.1' dh_perl dh_link jh_installlibs jh_classpath jh_manifest jh_exec jh_depends mh_installpoms mh_linkjars --skip-clean-poms dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dpkg-gensymbols: warning: debian/libssw0/DEBIAN/symbols doesn't match completely debian/libssw0.symbols --- debian/libssw0.symbols (libssw0_1.1-15_arm64) +++ dpkg-gensymbolsrUuOYK 2026-03-28 03:32:27.845081558 +1400 @@ -21,7 +21,7 @@ _ZNK20StripedSmithWaterman7Aligner13TranslateBaseEPKcRKiPa@Base 1.1 _ZNK20StripedSmithWaterman7Aligner5AlignEPKcRKNS_6FilterEPNS_9AlignmentE@Base 1.1 _ZNK20StripedSmithWaterman7Aligner5AlignEPKcS2_RKiRKNS_6FilterEPNS_9AlignmentE@Base 1.1 - (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 1.1 +#MISSING: 1.1-15# (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 1.1 align_destroy@Base 1.1 init_destroy@Base 1.1 mark_mismatch@Base 1.1 dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libssw-java-dbgsym' in '../libssw-java-dbgsym_1.1-15_arm64.deb'. dpkg-deb: building package 'ssw-align' in '../ssw-align_1.1-15_arm64.deb'. dpkg-deb: building package 'libssw0' in '../libssw0_1.1-15_arm64.deb'. dpkg-deb: building package 'libssw0-dbgsym' in '../libssw0-dbgsym_1.1-15_arm64.deb'. dpkg-deb: building package 'libssw-dev' in '../libssw-dev_1.1-15_arm64.deb'. dpkg-deb: building package 'libssw-java' in '../libssw-java_1.1-15_arm64.deb'. dpkg-deb: building package 'ssw-align-dbgsym' in '../ssw-align-dbgsym_1.1-15_arm64.deb'. dpkg-genbuildinfo --build=binary -O../libssw_1.1-15_arm64.buildinfo dpkg-genchanges --build=binary -O../libssw_1.1-15_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/784793/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/784793/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/784793 and its subdirectories I: Current time: Sat Mar 28 03:32:30 +14 2026 I: pbuilder-time-stamp: 1774618350 + false + set +x Fri Mar 27 13:32:30 UTC 2026 I: Signing ./b2/libssw_1.1-15_arm64.buildinfo as libssw_1.1-15_arm64.buildinfo.asc Fri Mar 27 13:32:31 UTC 2026 I: Signed ./b2/libssw_1.1-15_arm64.buildinfo as ./b2/libssw_1.1-15_arm64.buildinfo.asc Fri Mar 27 13:32:31 UTC 2026 - build #2 for libssw/unstable/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Fri Mar 27 13:32:31 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-vqRc6GKv, removing. /srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o: total 120 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 07:08 b1 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 07:09 b2 -rw-r--r-- 1 jenkins jenkins 2509 Jul 23 2024 libssw_1.1-15.dsc -rw------- 1 jenkins jenkins 103552 Feb 22 07:08 rbuildlog.oOSML63 /srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o/b1: total 496 -rw-r--r-- 1 jenkins jenkins 99642 Feb 22 07:08 build.log -rw-r--r-- 1 jenkins jenkins 23072 Feb 22 07:08 libssw-dev_1.1-15_arm64.deb -rw-r--r-- 1 jenkins jenkins 46776 Feb 22 07:08 libssw-java-dbgsym_1.1-15_arm64.deb -rw-r--r-- 1 jenkins jenkins 17300 Feb 22 07:08 libssw-java_1.1-15_arm64.deb -rw-r--r-- 1 jenkins jenkins 101532 Feb 22 07:08 libssw0-dbgsym_1.1-15_arm64.deb -rw-r--r-- 1 jenkins jenkins 19720 Feb 22 07:08 libssw0_1.1-15_arm64.deb -rw-r--r-- 1 jenkins jenkins 54308 Feb 22 07:08 libssw_1.1-15.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2509 Feb 22 07:08 libssw_1.1-15.dsc -rw-r--r-- 1 jenkins jenkins 9545 Feb 22 07:08 libssw_1.1-15_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 10427 Feb 22 07:08 libssw_1.1-15_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 3212 Feb 22 07:08 libssw_1.1-15_arm64.changes -rw-r--r-- 1 jenkins jenkins 1486 Feb 22 07:08 libssw_1.1-15_source.changes -rw-r--r-- 1 jenkins jenkins 57024 Feb 22 07:08 ssw-align-dbgsym_1.1-15_arm64.deb -rw-r--r-- 1 jenkins jenkins 20404 Feb 22 07:08 ssw-align_1.1-15_arm64.deb /srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o/b2: total 480 -rw-r--r-- 1 jenkins jenkins 101585 Feb 22 07:09 build.log -rw-r--r-- 1 jenkins jenkins 23072 Feb 22 07:09 libssw-dev_1.1-15_arm64.deb -rw-r--r-- 1 jenkins jenkins 46776 Feb 22 07:09 libssw-java-dbgsym_1.1-15_arm64.deb -rw-r--r-- 1 jenkins jenkins 17300 Feb 22 07:09 libssw-java_1.1-15_arm64.deb -rw-r--r-- 1 jenkins jenkins 101532 Feb 22 07:09 libssw0-dbgsym_1.1-15_arm64.deb -rw-r--r-- 1 jenkins jenkins 19720 Feb 22 07:09 libssw0_1.1-15_arm64.deb -rw-r--r-- 1 jenkins jenkins 54308 Feb 22 07:09 libssw_1.1-15.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2509 Feb 22 07:09 libssw_1.1-15.dsc -rw-r--r-- 1 jenkins jenkins 9545 Feb 22 07:09 libssw_1.1-15_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 10427 Feb 22 07:09 libssw_1.1-15_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 3212 Feb 22 07:09 libssw_1.1-15_arm64.changes -rw-r--r-- 1 jenkins jenkins 1486 Feb 22 07:09 libssw_1.1-15_source.changes -rw-r--r-- 1 jenkins jenkins 57024 Feb 22 07:09 ssw-align-dbgsym_1.1-15_arm64.deb -rw-r--r-- 1 jenkins jenkins 20404 Feb 22 07:09 ssw-align_1.1-15_arm64.deb Sat Feb 22 07:09:33 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Sat Feb 22 07:09:33 UTC 2025 I: libssw_1.1-15_arm64.changes: Format: 1.8 Date: Tue, 23 Jul 2024 20:36:29 +0200 Source: libssw Binary: libssw-dev libssw-java libssw-java-dbgsym libssw0 libssw0-dbgsym ssw-align ssw-align-dbgsym Architecture: arm64 Version: 1.1-15 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libssw-dev - Development headers and static libraries for libssw libssw-java - Java bindings for libssw libssw0 - fast SIMD parallelized implementation of the Smith-Waterman algor ssw-align - Smith-Waterman aligner based on libssw Closes: 1015525 1075207 Changes: libssw (1.1-15) unstable; urgency=medium . * Team upload. . [ Michael R. Crusoe ] * d/rules: append extra flag for ppc64el, don't override. . [ Étienne Mollier ] * d/libssw0.symbols: mark compiler leaked symbol as optional. (Closes: #1015525, #1075207) * d/rules: forcefully run LTO builds. * d/control: declare compliance to standards version 4.7.0. Checksums-Sha1: 18aa2d65a4e5d424862e55cbe5fe3c1542d92702 23072 libssw-dev_1.1-15_arm64.deb cdebdbefabe8bb74935cf967b5da46327213e82b 46776 libssw-java-dbgsym_1.1-15_arm64.deb 1409fae39a950e6412d225a4bcf2939e9bc4b24f 17300 libssw-java_1.1-15_arm64.deb 912239a82feed05567a5acc235f2ff70efad31bc 101532 libssw0-dbgsym_1.1-15_arm64.deb 96cf95619ce0b3001c49049fa35812592275add0 19720 libssw0_1.1-15_arm64.deb 02451eeff91ca63773a15bf44fd7ec996d641c35 9545 libssw_1.1-15_arm64.buildinfo cb83dd968a5c7a267ab9ee5f4f43ddcb2c057be1 57024 ssw-align-dbgsym_1.1-15_arm64.deb 0af3da72f36944ec9137a3acfbd6f342340e5c76 20404 ssw-align_1.1-15_arm64.deb Checksums-Sha256: d040db47d4fdf026b1adfa4e2e6684e79b202be8138ddd184753a6f26976f3cc 23072 libssw-dev_1.1-15_arm64.deb 6e62f840e757fc7f7b3006ab37b8d5f1d17422fe8572e04c92c305949eeca362 46776 libssw-java-dbgsym_1.1-15_arm64.deb 005704399b1c68880ee2b37ef94b3db92dd6f0055ad1b56a27a822cef2053621 17300 libssw-java_1.1-15_arm64.deb a7fa973fa03f9d8d429134c20dfe7d1e0b94f49030686ac7d9188f1df75c8441 101532 libssw0-dbgsym_1.1-15_arm64.deb 1bf29d223538020ad79f9222f41eb520f11b541f18fe2e78986b08c3b0c5e8c8 19720 libssw0_1.1-15_arm64.deb c36d299d1d44224888de23678929354ba5eabaa93289d19198c6a0246ef12faf 9545 libssw_1.1-15_arm64.buildinfo ce1433d726b841f7a12067dd722e65e6f1fcd722ad748df3f861587f09d32db2 57024 ssw-align-dbgsym_1.1-15_arm64.deb ba540f2204d42bcd844e1b7cd22a731cfee2dbf3c1cf1d158137c71908de4de3 20404 ssw-align_1.1-15_arm64.deb Files: 33acaf90496f6b86975474026e2ab942 23072 libdevel optional libssw-dev_1.1-15_arm64.deb 548af470fd5ffee530e7fe22da8ba12b 46776 debug optional libssw-java-dbgsym_1.1-15_arm64.deb 61efafee6dc27c9974607cd8a43845c3 17300 java optional libssw-java_1.1-15_arm64.deb 62e5453037af6d7ad15319edd400253e 101532 debug optional libssw0-dbgsym_1.1-15_arm64.deb 656a4dae1e2f5907985bd76154721a5d 19720 libs optional libssw0_1.1-15_arm64.deb bbe71f2c42702ccb98c1d1345b919b44 9545 science optional libssw_1.1-15_arm64.buildinfo 0adc2127f5717d7cba2eb8c2a5920637 57024 debug optional ssw-align-dbgsym_1.1-15_arm64.deb 493cd16b90f73710b2e03f5740df0bfa 20404 science optional ssw-align_1.1-15_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/libssw_1.1-15.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/libssw_1.1-15.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/libssw_1.1-15.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/libssw_1.1-15.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/arm64/libssw_1.1-15_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/libssw_1.1-15.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-02-22 07:08:15.531512407 +0000 +++ b2/build.log 2025-02-22 07:09:32.428034948 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Feb 21 19:07:06 -12 2025 -I: pbuilder-time-stamp: 1740208026 +I: Current time: Sat Mar 28 03:31:18 +14 2026 +I: pbuilder-time-stamp: 1774618278 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -28,52 +28,84 @@ dpkg-source: info: applying malloc I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/63854/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/784793/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 27 13:31 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/784793/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/784793/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='9d98c0dd7b474df5932ad6a9bbee092a' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='63854' - PS1='# ' - PS2='> ' + INVOCATION_ID=b495033bbdd44e40bbb63cfde4a27cdc + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=784793 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o/pbuilderrc_Z9UF --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o/b1 --logfile b1/build.log libssw_1.1-15.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o/pbuilderrc_tTb1 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o/b2 --logfile b2/build.log libssw_1.1-15.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/63854/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/784793/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -254,7 +286,7 @@ Get: 129 http://deb.debian.org/debian unstable/main arm64 libsimde-dev all 0.8.2-2 [467 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 maven-repo-helper all 1.11 [142 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] -Fetched 163 MB in 1s (278 MB/s) +Fetched 163 MB in 1s (179 MB/s) Preconfiguring packages ... Selecting previously unselected package libpipeline1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19889 files and directories currently installed.) @@ -694,8 +726,8 @@ Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat Feb 22 07:07:29 UTC 2025. -Universal Time is now: Sat Feb 22 07:07:29 UTC 2025. +Local time is now: Fri Mar 27 13:31:42 UTC 2026. +Universal Time is now: Fri Mar 27 13:31:42 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -1001,7 +1033,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libssw-1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libssw_1.1-15_source.changes +I: user script /srv/workspace/pbuilder/784793/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/784793/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libssw-1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libssw_1.1-15_source.changes dpkg-buildpackage: info: source package libssw dpkg-buildpackage: info: source version 1.1-15 dpkg-buildpackage: info: source distribution unstable @@ -1441,7 +1477,7 @@ Query: 731 GAGATGCTGATGTATAT-ACT-T-ACA--TATT------TT-ACAGTGTATTCAAATAAA 778 Target: 9474 GAAAATAATTGCATATGATACAGT--GTTTGTGCCAAAATGTATTCATGGCTTTAAAAAC 9531 - ||**|| |||*||||*||*|*| | *|||||**|*||*| CPU time: 4.071444 seconds + ||**|| |||*||||*||*|*| | *|||||**|*||*| CPU time: 4.030472 seconds || ||*|*||||*|| Query: 779 GAGTAT-ATTACATAAGACATA-TCCTTTTGTAACCAACT---TT--TGTCATTAACAA- 830 @@ -1507,7 +1543,7 @@ dh_makeshlibs -a dpkg-gensymbols: warning: debian/libssw0/DEBIAN/symbols doesn't match completely debian/libssw0.symbols --- debian/libssw0.symbols (libssw0_1.1-15_arm64) -+++ dpkg-gensymbols95oWkT 2025-02-21 19:08:11.641352830 -1200 ++++ dpkg-gensymbolsrUuOYK 2026-03-28 03:32:27.845081558 +1400 @@ -21,7 +21,7 @@ _ZNK20StripedSmithWaterman7Aligner13TranslateBaseEPKcRKiPa@Base 1.1 _ZNK20StripedSmithWaterman7Aligner5AlignEPKcRKNS_6FilterEPNS_9AlignmentE@Base 1.1 @@ -1534,11 +1570,11 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'libssw0' in '../libssw0_1.1-15_arm64.deb'. +dpkg-deb: building package 'libssw-java-dbgsym' in '../libssw-java-dbgsym_1.1-15_arm64.deb'. dpkg-deb: building package 'ssw-align' in '../ssw-align_1.1-15_arm64.deb'. +dpkg-deb: building package 'libssw0' in '../libssw0_1.1-15_arm64.deb'. dpkg-deb: building package 'libssw0-dbgsym' in '../libssw0-dbgsym_1.1-15_arm64.deb'. dpkg-deb: building package 'libssw-dev' in '../libssw-dev_1.1-15_arm64.deb'. -dpkg-deb: building package 'libssw-java-dbgsym' in '../libssw-java-dbgsym_1.1-15_arm64.deb'. dpkg-deb: building package 'libssw-java' in '../libssw-java_1.1-15_arm64.deb'. dpkg-deb: building package 'ssw-align-dbgsym' in '../ssw-align-dbgsym_1.1-15_arm64.deb'. dpkg-genbuildinfo --build=binary -O../libssw_1.1-15_arm64.buildinfo @@ -1548,12 +1584,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/784793/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/784793/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/63854 and its subdirectories -I: Current time: Fri Feb 21 19:08:14 -12 2025 -I: pbuilder-time-stamp: 1740208094 +I: removing directory /srv/workspace/pbuilder/784793 and its subdirectories +I: Current time: Sat Mar 28 03:32:30 +14 2026 +I: pbuilder-time-stamp: 1774618350 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/libssw_1.1-15.diff: 66.5% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/libssw_1.1-15.diff.gz b2/build.log: 78.8% -- replaced with stdout Compressing the 1st log... b1/build.log: 79.1% -- replaced with stdout Sat Feb 22 07:09:34 UTC 2025 I: diffoscope 288 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_libssw_unstable_arm64_1740208174 + touch /var/log/reproducible-builds/diffoscope_stamp_libssw_unstable_arm64_1740208174 + RESULT=0 + systemd-run '--description=diffoscope on libssw/1.1-15 in unstable/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_8-50041 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o --run-session -c jenkins-reproducible-unstable-diffoscope-dbc2533d-2311-4dce-841a-832fa25c664c -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o/dbd-tmp-eITmQvK ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o/libssw_1.1-15.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o/libssw_1.1-15.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o/libssw_1.1-15.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o/b1/libssw_1.1-15_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o/b2/libssw_1.1-15_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_8-50041.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o/libssw_1.1-15.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o/libssw_1.1-15.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o/libssw_1.1-15.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o/b1/libssw_1.1-15_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.3KHluZ4o/b2/libssw_1.1-15_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 235ms CPU time consumed: 235ms _ _ _ | (_) |__ ___ _____ __ | | | '_ \/ __/ __\ \ /\ / / | | | |_) \__ \__ \\ V V / |_|_|_.__/|___/___/ \_/\_/ Sat Feb 22 07:09:35 UTC 2025 I: diffoscope 288 found no differences in the changes files, and a .buildinfo file also exists. Sat Feb 22 07:09:35 UTC 2025 I: libssw from unstable built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-02-22 07:09:35] INFO: Starting at 2025-02-22 07:09:35.998661 [2025-02-22 07:09:36] INFO: Generating the pages of 1 package(s) [2025-02-22 07:09:36] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/arm64/libssw didn't produce a buildlog, even though it has been built. [2025-02-22 07:09:36] INFO: Finished at 2025-02-22 07:09:36.653526, took: 0:00:00.654873 Sat Feb 22 07:09:36 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/arm64/libssw.html Sat Feb 22 07:09:36 UTC 2025 I: Submitting .buildinfo files to external archives: Sat Feb 22 07:09:36 UTC 2025 I: Submitting 12K b1/libssw_1.1-15_arm64.buildinfo.asc https://buildinfo.debian.net/02451eeff91ca63773a15bf44fd7ec996d641c35/libssw_1.1-15_arm64 Sat Feb 22 07:09:38 UTC 2025 I: Submitting 12K b2/libssw_1.1-15_arm64.buildinfo.asc https://buildinfo.debian.net/8d3b4a76c937bbf3e0a47461a1f7e40b152aab3e/libssw_1.1-15_arm64 Sat Feb 22 07:09:39 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Feb 22 07:09:39 UTC 2025 I: Done submitting .buildinfo files. Sat Feb 22 07:09:39 UTC 2025 I: Removing signed libssw_1.1-15_arm64.buildinfo.asc files: removed './b1/libssw_1.1-15_arm64.buildinfo.asc' removed './b2/libssw_1.1-15_arm64.buildinfo.asc' 1740208179 arm64 unstable libssw Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/libssw_1.1-15.rbuild.log: 77.1% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/libssw_1.1-15.rbuild.log.gz [2025-02-22 07:09:39] INFO: Starting at 2025-02-22 07:09:39.942740 [2025-02-22 07:09:40] INFO: Generating the pages of 1 package(s) [2025-02-22 07:09:40] INFO: Finished at 2025-02-22 07:09:40.477480, took: 0:00:00.534749 All cleanup done. Sat Feb 22 07:09:40 UTC 2025 - total duration: 0h 2m 54s. Sat Feb 22 07:09:40 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-DuYh0smE, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 2min 59.621s CPU time consumed: 7.356s