Running as unit: rb-build-arm64_8-88957.service; invocation ID: a5edd41efea24828ba012da8e1f13be5 ==================================================================================== Mon Sep 15 00:08:44 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_8) on jenkins, called using "codethink04-arm64 codethink03-arm64" as arguments. Mon Sep 15 00:08:44 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-6CHWYSFu" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Sep 15 00:08:44 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Mon Sep 15 00:08:44 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-wQohNu' Mon Sep 15 00:08:45 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Mon Sep 15 00:08:45 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-uqqVIk' ok, let's check if libtfbs-perl is building anywhere yet… ok, libtfbs-perl is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of libtfbs-perl in forky on arm64 on jenkins now. 1st build will be done on codethink04-arm64.debian.net. 2nd build will be done on codethink03-arm64.debian.net. ============================================================================= Mon Sep 15 00:09:00 UTC 2025 I: starting to build libtfbs-perl/forky/arm64 on jenkins on '2025-09-15 00:08' Mon Sep 15 00:09:00 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_8/88957/console.log 1757894940 arm64 forky libtfbs-perl Mon Sep 15 00:09:00 UTC 2025 I: Downloading source for forky/libtfbs-perl=0.7.1+ds-5 --2025-09-15 00:09:00-- http://deb.debian.org/debian/pool/main/libt/libtfbs-perl/libtfbs-perl_0.7.1%2bds-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2429 (2.4K) [text/prs.lines.tag] Saving to: ‘libtfbs-perl_0.7.1+ds-5.dsc’ 0K .. 100% 279M=0s 2025-09-15 00:09:00 (279 MB/s) - ‘libtfbs-perl_0.7.1+ds-5.dsc’ saved [2429/2429] --2025-09-15 00:09:00-- http://deb.debian.org/debian/pool/main/libt/libtfbs-perl/libtfbs-perl_0.7.1%2bds-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2429 (2.4K) [text/prs.lines.tag] Saving to: ‘libtfbs-perl_0.7.1+ds-5.dsc’ 0K .. 100% 279M=0s 2025-09-15 00:09:00 (279 MB/s) - ‘libtfbs-perl_0.7.1+ds-5.dsc’ saved [2429/2429] Mon Sep 15 00:09:00 UTC 2025 I: libtfbs-perl_0.7.1+ds-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libtfbs-perl Binary: libtfbs-perl Architecture: any Version: 0.7.1+ds-5 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Charles Plessy , Andreas Tille Homepage: http://tfbs.genereg.net Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/libtfbs-perl Vcs-Git: https://salsa.debian.org/med-team/libtfbs-perl.git Testsuite: autopkgtest Testsuite-Triggers: libgd-gd2-perl, pkg-perl-autopkgtest, pkg-perl-autopkgtest-heavy Build-Depends: debhelper-compat (= 13), dh-sequence-pdl, perl:native, perl-xs-dev, pdl (>= 1:2.016), libcrypt-dev, bioperl, libwww-perl , libdbi-perl Package-List: libtfbs-perl deb perl optional arch=any Checksums-Sha1: 8906681164013dda04cfabdb52b2d5667e5a972b 196444 libtfbs-perl_0.7.1+ds.orig.tar.xz 5b9fbb109e2e9a69a8a52087482163f1839e7a32 12884 libtfbs-perl_0.7.1+ds-5.debian.tar.xz Checksums-Sha256: 4720e694e55b9df9c9732f4e93102882005666019c49652000d1230244929e73 196444 libtfbs-perl_0.7.1+ds.orig.tar.xz cbd9b1eaa3ed58deab9658f7ef0ae7dd47239ef7b1b0354b43db84794a8ed424 12884 libtfbs-perl_0.7.1+ds-5.debian.tar.xz Files: 77cf0f26efb308a11b8d9e0fdb600fa4 196444 libtfbs-perl_0.7.1+ds.orig.tar.xz 5dd7d527b4e9ed4874fe3b8444d486f0 12884 libtfbs-perl_0.7.1+ds-5.debian.tar.xz Dgit: 162200f966bcca633099bc0f44ba91e35b5e8a32 debian archive/debian/0.7.1+ds-5 https://git.dgit.debian.org/libtfbs-perl -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmjDONYUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqDag/+P2lYEx09aLVk7u7VXDU5MIZUqjLT WzrvrkwahSyIDy/GuZ5Du50GN1tLqhnblca3xrWXYkI321MZ5OAVFh5yiU68j0kQ zTc11h1yVn4XLkl0e7Tfh7PhpPsPdMbUveZ4iPcZyW6JYNkKLqkDtLgCqZcynN5p ptIvA43auLSJAkQdR1gQ4b/J8kQsWNTRj2JoVYKWcdxdcjN8wFZfAZhXMQg0jFh+ tGoX5tFlXdhZpbUisfDdwg3H+DiigfUfmt/mYwL/9zztt9WVdJLGNiB5EuT1mSqD R9O627S0RTBTHasEgmZpAYW71veLLjSoxAHpX1bVV5uyxUaE5zWsGUXO4XD+bNPZ Jnk3H8bCdYD8Deft3hI23jV68wV7w5XbqDjkgt3SL/LvWhzV9NaHPpsew5zfzELg lsxtteEloyOI/TXSn1B98ujTgj0hIbo9AsA/Hk90NDdpI7/v4PcqL+ZiNA151PNz 68sMA33BOW8g66953KM9ZYr7Mp969hLc8ozxQvgOgQZs6WGCWuUv0cwbR3h9L0AW LsYk2CIRR50Ik8mZmfKRu3rBAaCPnR/YE/HBm3U0DSze2BeXoF70dUQYJEhv9ogP vyTYHLPEmYPr6aMvcDM+xSP7WdwsfWU4YbY5DgatZ4+rM6zTY6jlUw3mhgfIhi0v qFbd6r8904sB+mY= =EW2Y -----END PGP SIGNATURE----- Mon Sep 15 00:09:00 UTC 2025 I: Checking whether the package is not for us Mon Sep 15 00:09:00 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Mon Sep 15 00:09:00 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Mon Sep 15 00:09:00 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Mon Sep 15 00:09:00 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-T9ntbw' ==================================================================================== Mon Sep 15 00:09:01 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "1 libtfbs-perl forky /srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy 0.7.1+ds-5" as arguments. Mon Sep 15 00:09:01 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-fVhXAe4f" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Sep 15 00:09:01 UTC 2025 I: Downloading source for forky/libtfbs-perl=0.7.1+ds-5 Reading package lists... NOTICE: 'libtfbs-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libtfbs-perl.git Please use: git clone https://salsa.debian.org/med-team/libtfbs-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 212 kB of source archives. Get:1 http://deb.debian.org/debian forky/main libtfbs-perl 0.7.1+ds-5 (dsc) [2429 B] Get:2 http://deb.debian.org/debian forky/main libtfbs-perl 0.7.1+ds-5 (tar) [196 kB] Get:3 http://deb.debian.org/debian forky/main libtfbs-perl 0.7.1+ds-5 (diff) [12.9 kB] Fetched 212 kB in 0s (8063 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'libtfbs-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libtfbs-perl.git Please use: git clone https://salsa.debian.org/med-team/libtfbs-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 212 kB of source archives. Get:1 http://deb.debian.org/debian forky/main libtfbs-perl 0.7.1+ds-5 (dsc) [2429 B] Get:2 http://deb.debian.org/debian forky/main libtfbs-perl 0.7.1+ds-5 (tar) [196 kB] Get:3 http://deb.debian.org/debian forky/main libtfbs-perl 0.7.1+ds-5 (diff) [12.9 kB] Fetched 212 kB in 0s (8063 kB/s) Download complete and in download only mode ============================================================================= Building libtfbs-perl in forky on arm64 on codethink04-arm64 now. Date: Mon Sep 15 01:09:01 BST 2025 Date UTC: Mon Sep 15 00:09:01 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 14 12:09:01 -12 2025 I: pbuilder-time-stamp: 1757894941 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libtfbs-perl_0.7.1+ds-5.dsc] I: copying [./libtfbs-perl_0.7.1+ds.orig.tar.xz] I: copying [./libtfbs-perl_0.7.1+ds-5.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libtfbs-perl_0.7.1+ds-5.dsc: no acceptable signature found dpkg-source: info: extracting libtfbs-perl in libtfbs-perl-0.7.1+ds dpkg-source: info: unpacking libtfbs-perl_0.7.1+ds.orig.tar.xz dpkg-source: info: unpacking libtfbs-perl_0.7.1+ds-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying configure.patch dpkg-source: info: applying spelling-errors.patch dpkg-source: info: applying dpkg-1.22.6.patch dpkg-source: info: applying gcc-14.patch dpkg-source: info: applying gcc-15.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2250338/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='ff9407c160b9471cba2c8cc2b64ff578' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2250338' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy/pbuilderrc_2YJP --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy/b1 --logfile b1/build.log libtfbs-perl_0.7.1+ds-5.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2250338/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-pdl, perl:native, perl-xs-dev, pdl (>= 1:2.016), libcrypt-dev, bioperl, libwww-perl, libdbi-perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-pdl; however: Package dh-sequence-pdl is not installed. pbuilder-satisfydepends-dummy depends on perl:native. pbuilder-satisfydepends-dummy depends on perl-xs-dev; however: Package perl-xs-dev is not installed. pbuilder-satisfydepends-dummy depends on pdl (>= 1:2.016); however: Package pdl is not installed. pbuilder-satisfydepends-dummy depends on bioperl; however: Package bioperl is not installed. pbuilder-satisfydepends-dummy depends on libwww-perl; however: Package libwww-perl is not installed. pbuilder-satisfydepends-dummy depends on libdbi-perl; however: Package libdbi-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bioperl{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libarchive-zip-perl{a} libbio-perl-perl{a} libcapture-tiny-perl{a} libclass-data-inheritable-perl{a} libclone-perl{a} libdata-stag-perl{a} libdbi-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libelf1t64{a} libencode-locale-perl{a} libexception-class-perl{a} libfile-listing-perl{a} libfile-map-perl{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libnet-http-perl{a} libnet-ssleay-perl{a} libperl-dev{a} libpipeline1{a} libpod-parser-perl{a} libsub-exporter-progressive-perl{a} libsub-uplevel-perl{a} libterm-readkey-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml2-16{a} m4{a} man-db{a} netbase{a} openssl{a} pdl{a} perl-openssl-defaults{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: bioperl-run curl libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libcache-cache-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl libio-compress-brotli-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libpdl-filter-perl libpdl-fit-perl libpdl-graphics-trid-perl libpdl-gsl-perl libpdl-io-dicom-perl libpdl-io-envi-perl libpdl-io-gd-perl libpdl-io-hdf-perl libpdl-io-idl-perl libpdl-opt-simplex-perl libpdl-transform-proj4-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libterm-readline-gnu-perl libterm-readline-perl-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libyaml-perl lynx perl-doc perl-tk wget 0 packages upgraded, 78 newly installed, 0 to remove and 0 not upgraded. Need to get 22.5 MB of archives. After unpacking 84.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 netbase all 6.5 [12.4 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 openssl arm64 3.5.2-1 [1457 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 ca-certificates all 20250419 [162 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.1-2 [93.9 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 libdata-stag-perl all 0.14-3 [448 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 libbio-perl-perl all 1.7.8-2 [2498 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get: 23 http://deb.debian.org/debian forky/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 libtest-deep-perl all 1.205-1 [52.3 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 libtext-diff-perl all 1.45-2 [27.2 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 libtest-differences-perl all 0.71-1 [17.9 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 libtest-exception-perl all 0.43-3 [16.9 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 libtest-warn-perl all 0.37-2 [14.5 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 libtest-most-perl all 0.38-1 [25.1 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 bioperl all 1.7.8-2 [231 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.26 [91.8 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-5 [540 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 38 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 41 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 debhelper all 13.26 [939 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 libdbi-perl arm64 1.647-1 [856 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 56 http://deb.debian.org/debian forky/main arm64 libfile-map-perl arm64 0.71-2 [28.6 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 liburi-perl all 5.30-1 [105 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 libhtml-parser-perl arm64 3.83-1+b2 [97.5 kB] Get: 61 http://deb.debian.org/debian forky/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 64 http://deb.debian.org/debian forky/main arm64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B] Get: 68 http://deb.debian.org/debian forky/main arm64 libnet-ssleay-perl arm64 1.94-3 [323 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 libio-socket-ssl-perl all 2.095-1 [226 kB] Get: 70 http://deb.debian.org/debian forky/main arm64 libnet-http-perl all 6.23-1 [23.9 kB] Get: 71 http://deb.debian.org/debian forky/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 72 http://deb.debian.org/debian forky/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 73 http://deb.debian.org/debian forky/main arm64 libwww-perl all 6.78-1 [183 kB] Get: 74 http://deb.debian.org/debian forky/main arm64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 75 http://deb.debian.org/debian forky/main arm64 libperl-dev arm64 5.40.1-6 [1019 kB] Get: 76 http://deb.debian.org/debian forky/main arm64 libpod-parser-perl all 1.67-1 [94.1 kB] Get: 77 http://deb.debian.org/debian forky/main arm64 libterm-readkey-perl arm64 2.38-2+b4 [24.5 kB] Get: 78 http://deb.debian.org/debian forky/main arm64 pdl arm64 1:2.100-1 [2910 kB] Fetched 22.5 MB in 0s (65.7 MB/s) Preconfiguring packages ... Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../00-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package openssl. 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Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41.1-2_arm64.deb ... Unpacking bsdextrautils (2.41.1-2) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../11-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.20-1_arm64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../18-libio-string-perl_1.08-4_all.deb ... Unpacking libio-string-perl (1.08-4) ... Selecting previously unselected package libdata-stag-perl. Preparing to unpack .../19-libdata-stag-perl_0.14-3_all.deb ... Unpacking libdata-stag-perl (0.14-3) ... Selecting previously unselected package libbio-perl-perl. Preparing to unpack .../20-libbio-perl-perl_1.7.8-2_all.deb ... Unpacking libbio-perl-perl (1.7.8-2) ... Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../21-libclass-data-inheritable-perl_0.10-1_all.deb ... Unpacking libclass-data-inheritable-perl (0.10-1) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../22-libdevel-stacktrace-perl_2.0500-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0500-1) ... Selecting previously unselected package libexception-class-perl. Preparing to unpack .../23-libexception-class-perl_1.45-1_all.deb ... Unpacking libexception-class-perl (1.45-1) ... Selecting previously unselected package libtest-deep-perl. Preparing to unpack .../24-libtest-deep-perl_1.205-1_all.deb ... Unpacking libtest-deep-perl (1.205-1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../25-libcapture-tiny-perl_0.50-1_all.deb ... Unpacking libcapture-tiny-perl (0.50-1) ... Selecting previously unselected package libalgorithm-diff-perl. Preparing to unpack .../26-libalgorithm-diff-perl_1.201-1_all.deb ... Unpacking libalgorithm-diff-perl (1.201-1) ... Selecting previously unselected package libtext-diff-perl. Preparing to unpack .../27-libtext-diff-perl_1.45-2_all.deb ... Unpacking libtext-diff-perl (1.45-2) ... Selecting previously unselected package libtest-differences-perl. Preparing to unpack .../28-libtest-differences-perl_0.71-1_all.deb ... Unpacking libtest-differences-perl (0.71-1) ... Selecting previously unselected package libsub-uplevel-perl. Preparing to unpack .../29-libsub-uplevel-perl_0.2800-3_all.deb ... Unpacking libsub-uplevel-perl (0.2800-3) ... Selecting previously unselected package libtest-exception-perl. Preparing to unpack .../30-libtest-exception-perl_0.43-3_all.deb ... Unpacking libtest-exception-perl (0.43-3) ... Selecting previously unselected package libtest-warn-perl. Preparing to unpack .../31-libtest-warn-perl_0.37-2_all.deb ... Unpacking libtest-warn-perl (0.37-2) ... Selecting previously unselected package libtest-most-perl. Preparing to unpack .../32-libtest-most-perl_0.38-1_all.deb ... Unpacking libtest-most-perl (0.38-1) ... Selecting previously unselected package bioperl. Preparing to unpack .../33-bioperl_1.7.8-2_all.deb ... Unpacking bioperl (1.7.8-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../34-libdebhelper-perl_13.26_all.deb ... Unpacking libdebhelper-perl (13.26) ... Selecting previously unselected package libtool. Preparing to unpack .../35-libtool_2.5.4-5_all.deb ... Unpacking libtool (2.5.4-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../36-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../37-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../38-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../39-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../40-libelf1t64_0.193-3_arm64.deb ... Unpacking libelf1t64:arm64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../41-dwz_0.16-2_arm64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../42-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2-16:arm64. Preparing to unpack .../43-libxml2-16_2.14.5+dfsg-0.2_arm64.deb ... Unpacking libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Selecting previously unselected package gettext. Preparing to unpack .../44-gettext_0.23.1-2+b1_arm64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../45-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../46-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../47-debhelper_13.26_all.deb ... Unpacking debhelper (13.26) ... Selecting previously unselected package libclone-perl:arm64. Preparing to unpack .../48-libclone-perl_0.47-1+b1_arm64.deb ... Unpacking libclone-perl:arm64 (0.47-1+b1) ... Selecting previously unselected package libdbi-perl:arm64. Preparing to unpack .../49-libdbi-perl_1.647-1_arm64.deb ... Unpacking libdbi-perl:arm64 (1.647-1) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../50-libencode-locale-perl_1.05-3_all.deb ... Unpacking libencode-locale-perl (1.05-3) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../51-libtimedate-perl_2.3300-2_all.deb ... Unpacking libtimedate-perl (2.3300-2) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../52-libhttp-date-perl_6.06-1_all.deb ... Unpacking libhttp-date-perl (6.06-1) ... Selecting previously unselected package libfile-listing-perl. Preparing to unpack .../53-libfile-listing-perl_6.16-1_all.deb ... Unpacking libfile-listing-perl (6.16-1) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../54-libsub-exporter-progressive-perl_0.001013-3_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-3) ... Selecting previously unselected package libfile-map-perl. Preparing to unpack .../55-libfile-map-perl_0.71-2_arm64.deb ... Unpacking libfile-map-perl (0.71-2) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../56-libfile-which-perl_1.27-2_all.deb ... Unpacking libfile-which-perl (1.27-2) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../57-libhtml-tagset-perl_3.24-1_all.deb ... Unpacking libhtml-tagset-perl (3.24-1) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../58-liburi-perl_5.30-1_all.deb ... Unpacking liburi-perl (5.30-1) ... Selecting previously unselected package libhtml-parser-perl:arm64. Preparing to unpack .../59-libhtml-parser-perl_3.83-1+b2_arm64.deb ... Unpacking libhtml-parser-perl:arm64 (3.83-1+b2) ... Selecting previously unselected package libhtml-tree-perl. Preparing to unpack .../60-libhtml-tree-perl_5.07-3_all.deb ... Unpacking libhtml-tree-perl (5.07-3) ... Selecting previously unselected package libio-html-perl. Preparing to unpack .../61-libio-html-perl_1.004-3_all.deb ... Unpacking libio-html-perl (1.004-3) ... Selecting previously unselected package liblwp-mediatypes-perl. Preparing to unpack .../62-liblwp-mediatypes-perl_6.04-2_all.deb ... Unpacking liblwp-mediatypes-perl (6.04-2) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../63-libhttp-message-perl_7.00-2_all.deb ... Unpacking libhttp-message-perl (7.00-2) ... Selecting previously unselected package libhttp-cookies-perl. Preparing to unpack .../64-libhttp-cookies-perl_6.11-1_all.deb ... Unpacking libhttp-cookies-perl (6.11-1) ... Selecting previously unselected package libhttp-negotiate-perl. Preparing to unpack .../65-libhttp-negotiate-perl_6.01-2_all.deb ... Unpacking libhttp-negotiate-perl (6.01-2) ... Selecting previously unselected package perl-openssl-defaults:arm64. Preparing to unpack .../66-perl-openssl-defaults_7+b2_arm64.deb ... Unpacking perl-openssl-defaults:arm64 (7+b2) ... Selecting previously unselected package libnet-ssleay-perl:arm64. Preparing to unpack .../67-libnet-ssleay-perl_1.94-3_arm64.deb ... Unpacking libnet-ssleay-perl:arm64 (1.94-3) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../68-libio-socket-ssl-perl_2.095-1_all.deb ... Unpacking libio-socket-ssl-perl (2.095-1) ... Selecting previously unselected package libnet-http-perl. Preparing to unpack .../69-libnet-http-perl_6.23-1_all.deb ... Unpacking libnet-http-perl (6.23-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../70-libtry-tiny-perl_0.32-1_all.deb ... Unpacking libtry-tiny-perl (0.32-1) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../71-libwww-robotrules-perl_6.02-1_all.deb ... Unpacking libwww-robotrules-perl (6.02-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../72-libwww-perl_6.78-1_all.deb ... Unpacking libwww-perl (6.78-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../73-liblwp-protocol-https-perl_6.14-1_all.deb ... Unpacking liblwp-protocol-https-perl (6.14-1) ... Selecting previously unselected package libperl-dev:arm64. Preparing to unpack .../74-libperl-dev_5.40.1-6_arm64.deb ... Unpacking libperl-dev:arm64 (5.40.1-6) ... Selecting previously unselected package libpod-parser-perl. Preparing to unpack .../75-libpod-parser-perl_1.67-1_all.deb ... Adding 'diversion of /usr/bin/podselect to /usr/bin/podselect.bundled by libpod-parser-perl' Adding 'diversion of /usr/share/man/man1/podselect.1.gz to /usr/share/man/man1/podselect.bundled.1.gz by libpod-parser-perl' Unpacking libpod-parser-perl (1.67-1) ... Selecting previously unselected package libterm-readkey-perl. Preparing to unpack .../76-libterm-readkey-perl_2.38-2+b4_arm64.deb ... Unpacking libterm-readkey-perl (2.38-2+b4) ... Selecting previously unselected package pdl. Preparing to unpack .../77-pdl_1%3a2.100-1_arm64.deb ... Unpacking pdl (1:2.100-1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libfile-which-perl (1.27-2) ... Setting up bsdextrautils (2.41.1-2) ... Setting up libtest-deep-perl (1.205-1) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libclone-perl:arm64 (0.47-1+b1) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.26) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up perl-openssl-defaults:arm64 (7+b2) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libperl-dev:arm64 (5.40.1-6) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.193-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20240727.1) ... Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libtext-diff-perl (1.45-2) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up libio-html-perl (1.004-3) ... Setting up libpod-parser-perl (1.67-1) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.50-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up dwz (0.16-2) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up netbase (6.5) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libbio-perl-perl (1.7.8-2) ... Setting up libterm-readkey-perl (2.38-2+b4) ... Setting up openssl (3.5.2-1) ... Setting up liburi-perl (5.30-1) ... Setting up libdbi-perl:arm64 (1.647-1) ... Setting up libnet-ssleay-perl:arm64 (1.94-3) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtool (2.5.4-5) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libtest-differences-perl (0.71-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libtest-exception-perl (0.43-3) ... Setting up libfile-map-perl (0.71-2) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-9) ... Setting up libhtml-parser-perl:arm64 (3.83-1+b2) ... Setting up libio-socket-ssl-perl (2.095-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libtest-most-perl (0.38-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up pdl (1:2.100-1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up bioperl (1.7.8-2) ... Setting up debhelper (13.26) ... Setting up libwww-perl (6.78-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libtfbs-perl-0.7.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libtfbs-perl_0.7.1+ds-5_source.changes dpkg-buildpackage: info: source package libtfbs-perl dpkg-buildpackage: info: source version 0.7.1+ds-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libtfbs-perl-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libtfbs-perl-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now" ------------------------------------------------- WARNING ------------------------------------------------- GD.pm does not seem to be installed. GD is reqired to produce "sequence logos" from information content matrices. If you need this functionality, please visit http://stein.cshl.org/WWW/software/GD/ for information on obtaining and installing GD. ------------------------------------------------- Do you have write access to a MySQL database server? [n] Checking if your kit is complete... Warning: the following files are missing in your kit: README Please inform the author. Writing MYMETA.yml and MYMETA.json Generating a Unix-style Makefile Writing Makefile for TFBS Writing MYMETA.yml and MYMETA.json dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' make[2]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds/Ext' Running Mkbootstrap for pwmsearch () "/usr/bin/perl" "/usr/share/perl/5.40.1/ExtUtils/xsubpp" -typemap '/usr/share/perl/5.40/ExtUtils/typemap' pwmsearch.xs > pwmsearch.xsc chmod 644 "pwmsearch.bs" Skip blib/lib/TFBS/PatternGen/Motif/Matrix.pm (unchanged) cp TFBS/Matrix/Alignment.pm blib/lib/TFBS/Matrix/Alignment.pm Skip blib/lib/TFBS/PatternGen/YMF/Motif.pm (unchanged) cp TFBS/Run/ConservationProfileGenerator.pm blib/lib/TFBS/Run/ConservationProfileGenerator.pm cp TFBS/DB/TRANSFAC.pm blib/lib/TFBS/DB/TRANSFAC.pm Skip blib/lib/TFBS/PatternGen/AnnSpec/Motif.pm (unchanged) Skip blib/lib/TFBS/PatternGen/MEME.pm (unchanged) cp TFBS/Matrix.pm blib/lib/TFBS/Matrix.pm Skip blib/lib/TFBS/DB/JASPAR2.pm (unchanged) cp TFBS/DB/JASPAR6.pm blib/lib/TFBS/DB/JASPAR6.pm Skip blib/lib/TFBS/PatternGen/MEME/Motif.pm (unchanged) Skip blib/lib/TFBS/PatternGen/SimplePFM.pm (unchanged) cp TFBS/Matrix/ICM.pm blib/lib/TFBS/Matrix/ICM.pm Skip blib/lib/TFBS/PatternGen/Motif/Word.pm (unchanged) cp TFBS/DB/JASPAR.pm blib/lib/TFBS/DB/JASPAR.pm cp TFBS/ConservationProfile.pm blib/lib/TFBS/ConservationProfile.pm cp TFBS/TFFM.pm blib/lib/TFBS/TFFM.pm Skip blib/lib/TFBS/PatternI.pm (unchanged) Skip blib/lib/TFBS/PatternGenI.pm (unchanged) cp TFBS/Matrix/PFM.pm blib/lib/TFBS/Matrix/PFM.pm cp TFBS/SitePair.pm blib/lib/TFBS/SitePair.pm cp TFBS/PatternGen/YMF.pm blib/lib/TFBS/PatternGen/YMF.pm Skip blib/lib/TFBS/PatternGen/Gibbs/Motif.pm (unchanged) Skip blib/lib/TFBS/Matrix/PWM.pm (unchanged) Skip blib/lib/TFBS/DB/LocalTRANSFAC.pm (unchanged) cp TFBS/DB/JASPAR5.pm blib/lib/TFBS/DB/JASPAR5.pm Skip blib/lib/TFBS/PatternGen/Gibbs.pm (unchanged) cp TFBS/README.md blib/lib/TFBS/README.md cp TFBS/DB/JASPAR4.pm blib/lib/TFBS/DB/JASPAR4.pm Skip blib/lib/TFBS/PatternGen/Elph.pm (unchanged) cp TFBS/DB/JASPAR7.pm blib/lib/TFBS/DB/JASPAR7.pm Skip blib/lib/TFBS/PatternGen/Elph/Motif.pm (unchanged) Skip blib/lib/TFBS/SiteSet.pm (unchanged) Skip blib/lib/TFBS/Site.pm (unchanged) Skip blib/lib/TFBS/Matrix/_Alignment.pm (unchanged) cp TFBS/DB/FlatFileDir.pm blib/lib/TFBS/DB/FlatFileDir.pm cp TFBS/PatternGen.pm blib/lib/TFBS/PatternGen.pm cp TFBS/MatrixSet.pm blib/lib/TFBS/MatrixSet.pm Skip blib/lib/TFBS/SitePairSet.pm (unchanged) cp TFBS/PatternGen/AnnSpec.pm blib/lib/TFBS/PatternGen/AnnSpec.pm Skip blib/lib/TFBS/DB.pm (unchanged) Skip blib/lib/TFBS/Tools/SetOperations.pm (unchanged) "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- pwmsearch.bs ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.bs 644 Skip ../blib/lib/TFBS/Ext/pwmsearch.pm (unchanged) cp lib/pwm_searchPFF.c ../blib/lib/pwm_searchPFF.c Skip ../blib/lib/pwm_search.h (unchanged) Please specify prototyping behavior for pwmsearch.xs (see perlxs manual) mv pwmsearch.xsc pwmsearch.c aarch64-linux-gnu-gcc -c -I. -I./lib -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libtfbs-perl-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"0.2\" -DXS_VERSION=\"0.2\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" pwmsearch.c cp TFBS/_Iterator/_MatrixSetIterator.pm blib/lib/TFBS/_Iterator/_MatrixSetIterator.pm Skip blib/lib/TFBS/Word.pm (unchanged) Skip blib/lib/TFBS/_Iterator.pm (unchanged) cp TFBS/_Iterator/_SiteSetIterator.pm blib/lib/TFBS/_Iterator/_SiteSetIterator.pm Skip blib/lib/TFBS/Word/Consensus.pm (unchanged) In file included from pwmsearch.xs:4: ./lib/pwm_searchPFF.c: In function 'announce': ./lib/pwm_searchPFF.c:44:1: warning: old-style function definition [-Wold-style-definition] 44 | announce(msg) | ^~~~~~~~ ./lib/pwm_searchPFF.c: In function 'err_log': ./lib/pwm_searchPFF.c:64:1: warning: old-style function definition [-Wold-style-definition] 64 | err_log(msg) | ^~~~~~~ ./lib/pwm_searchPFF.c: In function 'save_hit': ./lib/pwm_searchPFF.c:99:1: warning: old-style function definition [-Wold-style-definition] 99 | save_hit(base,strand,score,hits,pnhit) | ^~~~~~~~ ./lib/pwm_searchPFF.c: In function 'get_cmd_args': ./lib/pwm_searchPFF.c:222:5: warning: old-style function definition [-Wold-style-definition] 222 | int get_cmd_args(argc,argv,pargs) | ^~~~~~~~~~~~ ./lib/pwm_searchPFF.c: In function 'get_sequence': ./lib/pwm_searchPFF.c:303:5: warning: old-style function definition [-Wold-style-definition] 303 | int get_sequence(fp,seq_id,sequence) | ^~~~~~~~~~~~ ./lib/pwm_searchPFF.c: In function 'best_pull': ./lib/pwm_searchPFF.c:414:5: warning: old-style function definition [-Wold-style-definition] 414 | int best_pull(pargs,pbase,pstrand,pscore) | ^~~~~~~~~ ./lib/pwm_searchPFF.c: In function 'mark': ./lib/pwm_searchPFF.c:460:1: warning: old-style function definition [-Wold-style-definition] 460 | mark(width) | ^~~~ ./lib/pwm_searchPFF.c: In function 'output': ./lib/pwm_searchPFF.c:478:1: warning: old-style function definition [-Wold-style-definition] 478 | output(pargs,seqid,base,seq,strand,score, outfp) | ^~~~~~ ./lib/pwm_searchPFF.c: In function 'do_seq': ./lib/pwm_searchPFF.c:539:1: warning: old-style function definition [-Wold-style-definition] 539 | do_seq(pargs,pwm,seqid,seq,outfp) | ^~~~~~ ./lib/pwm_searchPFF.c: In function 'loop_on_seqs': ./lib/pwm_searchPFF.c:674:1: warning: old-style function definition [-Wold-style-definition] 674 | loop_on_seqs(pargs,pwm,fp, outfp) | ^~~~~~~~~~~~ rm -f ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.so aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libtfbs-perl-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong pwmsearch.o -o ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.so \ -lm \ /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. chmod 755 ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.so Manifying 1 pod document make[2]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds/Ext' Manifying 35 pod documents make[1]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' prove --blib t/01_Matrix.t t/02_Search.t t/03_DB_FlatFileDir.t t/05_DB_JASPAR.t t/06_SimplePFM.t t/07_AnnSpec.t t/07_Elph.t t/07_Gibbs.t t/07_MEME.t t/08_DB_LocalTRANSFAC.t t/09_Word_Consensus.t t/10_Tools_SetOperations.t Ext/t/*.t Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/01_Matrix.t ............... ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/02_Search.t ............... ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/03_DB_FlatFileDir.t ....... ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/05_DB_JASPAR.t ............ ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/06_SimplePFM.t ............ ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/07_AnnSpec.t .............. ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/07_Elph.t ................. ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/07_Gibbs.t ................ ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/07_MEME.t ................. ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/08_DB_LocalTRANSFAC.t ..... ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/09_Word_Consensus.t ....... ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/10_Tools_SetOperations.t .. ok Ext/t/pwmsearch.t ........... ok All tests successful. Files=13, Tests=45, 3 wallclock secs ( 0.05 usr 0.02 sys + 2.00 cusr 0.38 csys = 2.45 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libtfbs-perl/ make -j12 install DESTDIR=/build/reproducible-path/libtfbs-perl-0.7.1\+ds/debian/libtfbs-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' make[2]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds/Ext' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- pwmsearch.bs ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.bs 644 Manifying 1 pod document make[2]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds/Ext' Manifying 35 pod documents Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/auto/TFBS/Ext/pwmsearch/pwmsearch.so Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/auto/TFBS/Ext/pwmsearch/pwmsearch.bundle Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/pwm_searchPFF.c Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/pwm_search.h Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/MatrixSet.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/README.md Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/SitePair.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/TFFM.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/ConservationProfile.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Matrix.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Site.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/_Iterator.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Word.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/SiteSet.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/SitePairSet.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternI.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGenI.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Run/ConservationProfileGenerator.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/_Iterator/_SiteSetIterator.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/_Iterator/_MatrixSetIterator.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Word/Consensus.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Tools/SetOperations.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/AnnSpec.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/YMF.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/SimplePFM.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/MEME.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/Gibbs.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/Elph.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/YMF/Motif.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/Motif/Word.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/Motif/Matrix.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/MEME/Motif.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/Gibbs/Motif.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/Elph/Motif.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/AnnSpec/Motif.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Matrix/PFM.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Matrix/ICM.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Matrix/Alignment.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Matrix/_Alignment.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Matrix/PWM.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Ext/pwmsearch.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/FlatFileDir.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR7.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR4.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR5.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR6.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/TRANSFAC.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/LocalTRANSFAC.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR2.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::TFFM.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::Alignment.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR7.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR6.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR5.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Site.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR4.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::TRANSFAC.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::LocalTRANSFAC.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR2.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Word::Consensus.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Word.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::SiteSet.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::SitePairSet.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::SitePair.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternI.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::YMF::Motif.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::YMF.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::SimplePFM.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::MEME::Motif.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::MEME.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Gibbs::Motif.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Gibbs.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Elph::Motif.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Elph.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::AnnSpec::Motif.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::AnnSpec.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::MatrixSet.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::PWM.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::PFM.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::ICM.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Ext::pwmsearch.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::FlatFileDir.3pm make[1]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' dh_installdocs dh_installchangelogs debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' dh_installexamples mkdir -p debian/libtfbs-perl/usr/share/doc/libtfbs-perl/examples/Ext cp -a Ext/t debian/libtfbs-perl/usr/share/doc/libtfbs-perl/examples/Ext for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' dh_installman dh_lintian dh_perl dh_pdl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' dh_fixperms find debian -name pwmsearch.bundle -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libtfbs-perl-dbgsym' in '../libtfbs-perl-dbgsym_0.7.1+ds-5_arm64.deb'. dpkg-deb: building package 'libtfbs-perl' in '../libtfbs-perl_0.7.1+ds-5_arm64.deb'. dpkg-genbuildinfo --build=binary -O../libtfbs-perl_0.7.1+ds-5_arm64.buildinfo dpkg-genchanges --build=binary -O../libtfbs-perl_0.7.1+ds-5_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2250338 and its subdirectories I: Current time: Sun Sep 14 12:09:47 -12 2025 I: pbuilder-time-stamp: 1757894987 Mon Sep 15 00:09:47 UTC 2025 I: Signing ./b1/libtfbs-perl_0.7.1+ds-5_arm64.buildinfo as libtfbs-perl_0.7.1+ds-5_arm64.buildinfo.asc Mon Sep 15 00:09:47 UTC 2025 I: Signed ./b1/libtfbs-perl_0.7.1+ds-5_arm64.buildinfo as ./b1/libtfbs-perl_0.7.1+ds-5_arm64.buildinfo.asc Mon Sep 15 00:09:47 UTC 2025 - build #1 for libtfbs-perl/forky/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Mon Sep 15 00:09:47 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-fVhXAe4f, removing. /srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Sep 15 00:09 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 15 00:09 b2 -rw-rw-r-- 1 jenkins jenkins 2429 Sep 11 21:13 libtfbs-perl_0.7.1+ds-5.dsc -rw------- 1 jenkins jenkins 3587 Sep 15 00:09 rbuildlog.kdm6gN1 /srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy/b1: total 360 -rw-r--r-- 1 jenkins jenkins 61213 Sep 15 00:09 build.log -rw-r--r-- 1 jenkins jenkins 35260 Sep 15 00:09 libtfbs-perl-dbgsym_0.7.1+ds-5_arm64.deb -rw-r--r-- 1 jenkins jenkins 12884 Sep 15 00:09 libtfbs-perl_0.7.1+ds-5.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2429 Sep 15 00:09 libtfbs-perl_0.7.1+ds-5.dsc -rw-r--r-- 1 jenkins jenkins 6484 Sep 15 00:09 libtfbs-perl_0.7.1+ds-5_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7366 Sep 15 00:09 libtfbs-perl_0.7.1+ds-5_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2002 Sep 15 00:09 libtfbs-perl_0.7.1+ds-5_arm64.changes -rw-r--r-- 1 jenkins jenkins 224624 Sep 15 00:09 libtfbs-perl_0.7.1+ds-5_arm64.deb -rw-r--r-- 1 jenkins jenkins 1847 Sep 15 00:09 libtfbs-perl_0.7.1+ds-5_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy/b2: total 0 Mon Sep 15 00:09:47 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 14 12:09:01 -12 2025 I: pbuilder-time-stamp: 1757894941 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libtfbs-perl_0.7.1+ds-5.dsc] I: copying [./libtfbs-perl_0.7.1+ds.orig.tar.xz] I: copying [./libtfbs-perl_0.7.1+ds-5.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libtfbs-perl_0.7.1+ds-5.dsc: no acceptable signature found dpkg-source: info: extracting libtfbs-perl in libtfbs-perl-0.7.1+ds dpkg-source: info: unpacking libtfbs-perl_0.7.1+ds.orig.tar.xz dpkg-source: info: unpacking libtfbs-perl_0.7.1+ds-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying configure.patch dpkg-source: info: applying spelling-errors.patch dpkg-source: info: applying dpkg-1.22.6.patch dpkg-source: info: applying gcc-14.patch dpkg-source: info: applying gcc-15.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2250338/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='ff9407c160b9471cba2c8cc2b64ff578' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2250338' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy/pbuilderrc_2YJP --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy/b1 --logfile b1/build.log libtfbs-perl_0.7.1+ds-5.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2250338/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-pdl, perl:native, perl-xs-dev, pdl (>= 1:2.016), libcrypt-dev, bioperl, libwww-perl, libdbi-perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-pdl; however: Package dh-sequence-pdl is not installed. pbuilder-satisfydepends-dummy depends on perl:native. pbuilder-satisfydepends-dummy depends on perl-xs-dev; however: Package perl-xs-dev is not installed. pbuilder-satisfydepends-dummy depends on pdl (>= 1:2.016); however: Package pdl is not installed. pbuilder-satisfydepends-dummy depends on bioperl; however: Package bioperl is not installed. pbuilder-satisfydepends-dummy depends on libwww-perl; however: Package libwww-perl is not installed. pbuilder-satisfydepends-dummy depends on libdbi-perl; however: Package libdbi-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bioperl{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libarchive-zip-perl{a} libbio-perl-perl{a} libcapture-tiny-perl{a} libclass-data-inheritable-perl{a} libclone-perl{a} libdata-stag-perl{a} libdbi-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libelf1t64{a} libencode-locale-perl{a} libexception-class-perl{a} libfile-listing-perl{a} libfile-map-perl{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libnet-http-perl{a} libnet-ssleay-perl{a} libperl-dev{a} libpipeline1{a} libpod-parser-perl{a} libsub-exporter-progressive-perl{a} libsub-uplevel-perl{a} libterm-readkey-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml2-16{a} m4{a} man-db{a} netbase{a} openssl{a} pdl{a} perl-openssl-defaults{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: bioperl-run curl libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libcache-cache-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl libio-compress-brotli-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libpdl-filter-perl libpdl-fit-perl libpdl-graphics-trid-perl libpdl-gsl-perl libpdl-io-dicom-perl libpdl-io-envi-perl libpdl-io-gd-perl libpdl-io-hdf-perl libpdl-io-idl-perl libpdl-opt-simplex-perl libpdl-transform-proj4-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libterm-readline-gnu-perl libterm-readline-perl-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libyaml-perl lynx perl-doc perl-tk wget 0 packages upgraded, 78 newly installed, 0 to remove and 0 not upgraded. Need to get 22.5 MB of archives. After unpacking 84.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 netbase all 6.5 [12.4 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 openssl arm64 3.5.2-1 [1457 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 ca-certificates all 20250419 [162 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.1-2 [93.9 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 libdata-stag-perl all 0.14-3 [448 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 libbio-perl-perl all 1.7.8-2 [2498 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get: 23 http://deb.debian.org/debian forky/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 libtest-deep-perl all 1.205-1 [52.3 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 libtext-diff-perl all 1.45-2 [27.2 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 libtest-differences-perl all 0.71-1 [17.9 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 libtest-exception-perl all 0.43-3 [16.9 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 libtest-warn-perl all 0.37-2 [14.5 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 libtest-most-perl all 0.38-1 [25.1 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 bioperl all 1.7.8-2 [231 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.26 [91.8 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-5 [540 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 38 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 41 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 debhelper all 13.26 [939 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 libdbi-perl arm64 1.647-1 [856 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 56 http://deb.debian.org/debian forky/main arm64 libfile-map-perl arm64 0.71-2 [28.6 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 liburi-perl all 5.30-1 [105 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 libhtml-parser-perl arm64 3.83-1+b2 [97.5 kB] Get: 61 http://deb.debian.org/debian forky/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 64 http://deb.debian.org/debian forky/main arm64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B] Get: 68 http://deb.debian.org/debian forky/main arm64 libnet-ssleay-perl arm64 1.94-3 [323 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 libio-socket-ssl-perl all 2.095-1 [226 kB] Get: 70 http://deb.debian.org/debian forky/main arm64 libnet-http-perl all 6.23-1 [23.9 kB] Get: 71 http://deb.debian.org/debian forky/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 72 http://deb.debian.org/debian forky/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 73 http://deb.debian.org/debian forky/main arm64 libwww-perl all 6.78-1 [183 kB] Get: 74 http://deb.debian.org/debian forky/main arm64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 75 http://deb.debian.org/debian forky/main arm64 libperl-dev arm64 5.40.1-6 [1019 kB] Get: 76 http://deb.debian.org/debian forky/main arm64 libpod-parser-perl all 1.67-1 [94.1 kB] Get: 77 http://deb.debian.org/debian forky/main arm64 libterm-readkey-perl arm64 2.38-2+b4 [24.5 kB] Get: 78 http://deb.debian.org/debian forky/main arm64 pdl arm64 1:2.100-1 [2910 kB] Fetched 22.5 MB in 0s (65.7 MB/s) Preconfiguring packages ... Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../00-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.5.2-1_arm64.deb ... Unpacking openssl (3.5.2-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../03-ca-certificates_20250419_all.deb ... Unpacking ca-certificates (20250419) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../08-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41.1-2_arm64.deb ... Unpacking bsdextrautils (2.41.1-2) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../11-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.20-1_arm64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../18-libio-string-perl_1.08-4_all.deb ... Unpacking libio-string-perl (1.08-4) ... Selecting previously unselected package libdata-stag-perl. Preparing to unpack .../19-libdata-stag-perl_0.14-3_all.deb ... Unpacking libdata-stag-perl (0.14-3) ... Selecting previously unselected package libbio-perl-perl. Preparing to unpack .../20-libbio-perl-perl_1.7.8-2_all.deb ... Unpacking libbio-perl-perl (1.7.8-2) ... Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../21-libclass-data-inheritable-perl_0.10-1_all.deb ... Unpacking libclass-data-inheritable-perl (0.10-1) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../22-libdevel-stacktrace-perl_2.0500-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0500-1) ... Selecting previously unselected package libexception-class-perl. Preparing to unpack .../23-libexception-class-perl_1.45-1_all.deb ... Unpacking libexception-class-perl (1.45-1) ... Selecting previously unselected package libtest-deep-perl. Preparing to unpack .../24-libtest-deep-perl_1.205-1_all.deb ... Unpacking libtest-deep-perl (1.205-1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../25-libcapture-tiny-perl_0.50-1_all.deb ... Unpacking libcapture-tiny-perl (0.50-1) ... Selecting previously unselected package libalgorithm-diff-perl. Preparing to unpack .../26-libalgorithm-diff-perl_1.201-1_all.deb ... Unpacking libalgorithm-diff-perl (1.201-1) ... Selecting previously unselected package libtext-diff-perl. Preparing to unpack .../27-libtext-diff-perl_1.45-2_all.deb ... Unpacking libtext-diff-perl (1.45-2) ... Selecting previously unselected package libtest-differences-perl. Preparing to unpack .../28-libtest-differences-perl_0.71-1_all.deb ... Unpacking libtest-differences-perl (0.71-1) ... Selecting previously unselected package libsub-uplevel-perl. Preparing to unpack .../29-libsub-uplevel-perl_0.2800-3_all.deb ... Unpacking libsub-uplevel-perl (0.2800-3) ... Selecting previously unselected package libtest-exception-perl. Preparing to unpack .../30-libtest-exception-perl_0.43-3_all.deb ... Unpacking libtest-exception-perl (0.43-3) ... Selecting previously unselected package libtest-warn-perl. Preparing to unpack .../31-libtest-warn-perl_0.37-2_all.deb ... Unpacking libtest-warn-perl (0.37-2) ... Selecting previously unselected package libtest-most-perl. Preparing to unpack .../32-libtest-most-perl_0.38-1_all.deb ... Unpacking libtest-most-perl (0.38-1) ... Selecting previously unselected package bioperl. Preparing to unpack .../33-bioperl_1.7.8-2_all.deb ... Unpacking bioperl (1.7.8-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../34-libdebhelper-perl_13.26_all.deb ... Unpacking libdebhelper-perl (13.26) ... Selecting previously unselected package libtool. Preparing to unpack .../35-libtool_2.5.4-5_all.deb ... Unpacking libtool (2.5.4-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../36-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../37-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../38-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../39-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../40-libelf1t64_0.193-3_arm64.deb ... Unpacking libelf1t64:arm64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../41-dwz_0.16-2_arm64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../42-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2-16:arm64. Preparing to unpack .../43-libxml2-16_2.14.5+dfsg-0.2_arm64.deb ... Unpacking libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Selecting previously unselected package gettext. Preparing to unpack .../44-gettext_0.23.1-2+b1_arm64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../45-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../46-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../47-debhelper_13.26_all.deb ... Unpacking debhelper (13.26) ... Selecting previously unselected package libclone-perl:arm64. Preparing to unpack .../48-libclone-perl_0.47-1+b1_arm64.deb ... Unpacking libclone-perl:arm64 (0.47-1+b1) ... Selecting previously unselected package libdbi-perl:arm64. Preparing to unpack .../49-libdbi-perl_1.647-1_arm64.deb ... Unpacking libdbi-perl:arm64 (1.647-1) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../50-libencode-locale-perl_1.05-3_all.deb ... Unpacking libencode-locale-perl (1.05-3) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../51-libtimedate-perl_2.3300-2_all.deb ... Unpacking libtimedate-perl (2.3300-2) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../52-libhttp-date-perl_6.06-1_all.deb ... Unpacking libhttp-date-perl (6.06-1) ... Selecting previously unselected package libfile-listing-perl. Preparing to unpack .../53-libfile-listing-perl_6.16-1_all.deb ... Unpacking libfile-listing-perl (6.16-1) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../54-libsub-exporter-progressive-perl_0.001013-3_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-3) ... Selecting previously unselected package libfile-map-perl. Preparing to unpack .../55-libfile-map-perl_0.71-2_arm64.deb ... Unpacking libfile-map-perl (0.71-2) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../56-libfile-which-perl_1.27-2_all.deb ... Unpacking libfile-which-perl (1.27-2) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../57-libhtml-tagset-perl_3.24-1_all.deb ... Unpacking libhtml-tagset-perl (3.24-1) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../58-liburi-perl_5.30-1_all.deb ... Unpacking liburi-perl (5.30-1) ... Selecting previously unselected package libhtml-parser-perl:arm64. Preparing to unpack .../59-libhtml-parser-perl_3.83-1+b2_arm64.deb ... Unpacking libhtml-parser-perl:arm64 (3.83-1+b2) ... Selecting previously unselected package libhtml-tree-perl. Preparing to unpack .../60-libhtml-tree-perl_5.07-3_all.deb ... Unpacking libhtml-tree-perl (5.07-3) ... Selecting previously unselected package libio-html-perl. Preparing to unpack .../61-libio-html-perl_1.004-3_all.deb ... Unpacking libio-html-perl (1.004-3) ... Selecting previously unselected package liblwp-mediatypes-perl. Preparing to unpack .../62-liblwp-mediatypes-perl_6.04-2_all.deb ... Unpacking liblwp-mediatypes-perl (6.04-2) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../63-libhttp-message-perl_7.00-2_all.deb ... Unpacking libhttp-message-perl (7.00-2) ... Selecting previously unselected package libhttp-cookies-perl. Preparing to unpack .../64-libhttp-cookies-perl_6.11-1_all.deb ... Unpacking libhttp-cookies-perl (6.11-1) ... Selecting previously unselected package libhttp-negotiate-perl. Preparing to unpack .../65-libhttp-negotiate-perl_6.01-2_all.deb ... Unpacking libhttp-negotiate-perl (6.01-2) ... Selecting previously unselected package perl-openssl-defaults:arm64. Preparing to unpack .../66-perl-openssl-defaults_7+b2_arm64.deb ... Unpacking perl-openssl-defaults:arm64 (7+b2) ... Selecting previously unselected package libnet-ssleay-perl:arm64. Preparing to unpack .../67-libnet-ssleay-perl_1.94-3_arm64.deb ... Unpacking libnet-ssleay-perl:arm64 (1.94-3) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../68-libio-socket-ssl-perl_2.095-1_all.deb ... Unpacking libio-socket-ssl-perl (2.095-1) ... Selecting previously unselected package libnet-http-perl. Preparing to unpack .../69-libnet-http-perl_6.23-1_all.deb ... Unpacking libnet-http-perl (6.23-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../70-libtry-tiny-perl_0.32-1_all.deb ... Unpacking libtry-tiny-perl (0.32-1) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../71-libwww-robotrules-perl_6.02-1_all.deb ... Unpacking libwww-robotrules-perl (6.02-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../72-libwww-perl_6.78-1_all.deb ... Unpacking libwww-perl (6.78-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../73-liblwp-protocol-https-perl_6.14-1_all.deb ... Unpacking liblwp-protocol-https-perl (6.14-1) ... Selecting previously unselected package libperl-dev:arm64. Preparing to unpack .../74-libperl-dev_5.40.1-6_arm64.deb ... Unpacking libperl-dev:arm64 (5.40.1-6) ... Selecting previously unselected package libpod-parser-perl. Preparing to unpack .../75-libpod-parser-perl_1.67-1_all.deb ... Adding 'diversion of /usr/bin/podselect to /usr/bin/podselect.bundled by libpod-parser-perl' Adding 'diversion of /usr/share/man/man1/podselect.1.gz to /usr/share/man/man1/podselect.bundled.1.gz by libpod-parser-perl' Unpacking libpod-parser-perl (1.67-1) ... Selecting previously unselected package libterm-readkey-perl. Preparing to unpack .../76-libterm-readkey-perl_2.38-2+b4_arm64.deb ... Unpacking libterm-readkey-perl (2.38-2+b4) ... Selecting previously unselected package pdl. Preparing to unpack .../77-pdl_1%3a2.100-1_arm64.deb ... Unpacking pdl (1:2.100-1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libfile-which-perl (1.27-2) ... Setting up bsdextrautils (2.41.1-2) ... Setting up libtest-deep-perl (1.205-1) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libclone-perl:arm64 (0.47-1+b1) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.26) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up perl-openssl-defaults:arm64 (7+b2) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libperl-dev:arm64 (5.40.1-6) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.193-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20240727.1) ... Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libtext-diff-perl (1.45-2) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up libio-html-perl (1.004-3) ... Setting up libpod-parser-perl (1.67-1) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.50-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up dwz (0.16-2) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up netbase (6.5) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libbio-perl-perl (1.7.8-2) ... Setting up libterm-readkey-perl (2.38-2+b4) ... Setting up openssl (3.5.2-1) ... Setting up liburi-perl (5.30-1) ... Setting up libdbi-perl:arm64 (1.647-1) ... Setting up libnet-ssleay-perl:arm64 (1.94-3) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtool (2.5.4-5) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libtest-differences-perl (0.71-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libtest-exception-perl (0.43-3) ... Setting up libfile-map-perl (0.71-2) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-9) ... Setting up libhtml-parser-perl:arm64 (3.83-1+b2) ... Setting up libio-socket-ssl-perl (2.095-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libtest-most-perl (0.38-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up pdl (1:2.100-1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up bioperl (1.7.8-2) ... Setting up debhelper (13.26) ... Setting up libwww-perl (6.78-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libtfbs-perl-0.7.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libtfbs-perl_0.7.1+ds-5_source.changes dpkg-buildpackage: info: source package libtfbs-perl dpkg-buildpackage: info: source version 0.7.1+ds-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libtfbs-perl-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libtfbs-perl-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now" ------------------------------------------------- WARNING ------------------------------------------------- GD.pm does not seem to be installed. GD is reqired to produce "sequence logos" from information content matrices. If you need this functionality, please visit http://stein.cshl.org/WWW/software/GD/ for information on obtaining and installing GD. ------------------------------------------------- Do you have write access to a MySQL database server? [n] Checking if your kit is complete... Warning: the following files are missing in your kit: README Please inform the author. Writing MYMETA.yml and MYMETA.json Generating a Unix-style Makefile Writing Makefile for TFBS Writing MYMETA.yml and MYMETA.json dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' make[2]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds/Ext' Running Mkbootstrap for pwmsearch () "/usr/bin/perl" "/usr/share/perl/5.40.1/ExtUtils/xsubpp" -typemap '/usr/share/perl/5.40/ExtUtils/typemap' pwmsearch.xs > pwmsearch.xsc chmod 644 "pwmsearch.bs" Skip blib/lib/TFBS/PatternGen/Motif/Matrix.pm (unchanged) cp TFBS/Matrix/Alignment.pm blib/lib/TFBS/Matrix/Alignment.pm Skip blib/lib/TFBS/PatternGen/YMF/Motif.pm (unchanged) cp TFBS/Run/ConservationProfileGenerator.pm blib/lib/TFBS/Run/ConservationProfileGenerator.pm cp TFBS/DB/TRANSFAC.pm blib/lib/TFBS/DB/TRANSFAC.pm Skip blib/lib/TFBS/PatternGen/AnnSpec/Motif.pm (unchanged) Skip blib/lib/TFBS/PatternGen/MEME.pm (unchanged) cp TFBS/Matrix.pm blib/lib/TFBS/Matrix.pm Skip blib/lib/TFBS/DB/JASPAR2.pm (unchanged) cp TFBS/DB/JASPAR6.pm blib/lib/TFBS/DB/JASPAR6.pm Skip blib/lib/TFBS/PatternGen/MEME/Motif.pm (unchanged) Skip blib/lib/TFBS/PatternGen/SimplePFM.pm (unchanged) cp TFBS/Matrix/ICM.pm blib/lib/TFBS/Matrix/ICM.pm Skip blib/lib/TFBS/PatternGen/Motif/Word.pm (unchanged) cp TFBS/DB/JASPAR.pm blib/lib/TFBS/DB/JASPAR.pm cp TFBS/ConservationProfile.pm blib/lib/TFBS/ConservationProfile.pm cp TFBS/TFFM.pm blib/lib/TFBS/TFFM.pm Skip blib/lib/TFBS/PatternI.pm (unchanged) Skip blib/lib/TFBS/PatternGenI.pm (unchanged) cp TFBS/Matrix/PFM.pm blib/lib/TFBS/Matrix/PFM.pm cp TFBS/SitePair.pm blib/lib/TFBS/SitePair.pm cp TFBS/PatternGen/YMF.pm blib/lib/TFBS/PatternGen/YMF.pm Skip blib/lib/TFBS/PatternGen/Gibbs/Motif.pm (unchanged) Skip blib/lib/TFBS/Matrix/PWM.pm (unchanged) Skip blib/lib/TFBS/DB/LocalTRANSFAC.pm (unchanged) cp TFBS/DB/JASPAR5.pm blib/lib/TFBS/DB/JASPAR5.pm Skip blib/lib/TFBS/PatternGen/Gibbs.pm (unchanged) cp TFBS/README.md blib/lib/TFBS/README.md cp TFBS/DB/JASPAR4.pm blib/lib/TFBS/DB/JASPAR4.pm Skip blib/lib/TFBS/PatternGen/Elph.pm (unchanged) cp TFBS/DB/JASPAR7.pm blib/lib/TFBS/DB/JASPAR7.pm Skip blib/lib/TFBS/PatternGen/Elph/Motif.pm (unchanged) Skip blib/lib/TFBS/SiteSet.pm (unchanged) Skip blib/lib/TFBS/Site.pm (unchanged) Skip blib/lib/TFBS/Matrix/_Alignment.pm (unchanged) cp TFBS/DB/FlatFileDir.pm blib/lib/TFBS/DB/FlatFileDir.pm cp TFBS/PatternGen.pm blib/lib/TFBS/PatternGen.pm cp TFBS/MatrixSet.pm blib/lib/TFBS/MatrixSet.pm Skip blib/lib/TFBS/SitePairSet.pm (unchanged) cp TFBS/PatternGen/AnnSpec.pm blib/lib/TFBS/PatternGen/AnnSpec.pm Skip blib/lib/TFBS/DB.pm (unchanged) Skip blib/lib/TFBS/Tools/SetOperations.pm (unchanged) "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- pwmsearch.bs ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.bs 644 Skip ../blib/lib/TFBS/Ext/pwmsearch.pm (unchanged) cp lib/pwm_searchPFF.c ../blib/lib/pwm_searchPFF.c Skip ../blib/lib/pwm_search.h (unchanged) Please specify prototyping behavior for pwmsearch.xs (see perlxs manual) mv pwmsearch.xsc pwmsearch.c aarch64-linux-gnu-gcc -c -I. -I./lib -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libtfbs-perl-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"0.2\" -DXS_VERSION=\"0.2\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" pwmsearch.c cp TFBS/_Iterator/_MatrixSetIterator.pm blib/lib/TFBS/_Iterator/_MatrixSetIterator.pm Skip blib/lib/TFBS/Word.pm (unchanged) Skip blib/lib/TFBS/_Iterator.pm (unchanged) cp TFBS/_Iterator/_SiteSetIterator.pm blib/lib/TFBS/_Iterator/_SiteSetIterator.pm Skip blib/lib/TFBS/Word/Consensus.pm (unchanged) In file included from pwmsearch.xs:4: ./lib/pwm_searchPFF.c: In function 'announce': ./lib/pwm_searchPFF.c:44:1: warning: old-style function definition [-Wold-style-definition] 44 | announce(msg) | ^~~~~~~~ ./lib/pwm_searchPFF.c: In function 'err_log': ./lib/pwm_searchPFF.c:64:1: warning: old-style function definition [-Wold-style-definition] 64 | err_log(msg) | ^~~~~~~ ./lib/pwm_searchPFF.c: In function 'save_hit': ./lib/pwm_searchPFF.c:99:1: warning: old-style function definition [-Wold-style-definition] 99 | save_hit(base,strand,score,hits,pnhit) | ^~~~~~~~ ./lib/pwm_searchPFF.c: In function 'get_cmd_args': ./lib/pwm_searchPFF.c:222:5: warning: old-style function definition [-Wold-style-definition] 222 | int get_cmd_args(argc,argv,pargs) | ^~~~~~~~~~~~ ./lib/pwm_searchPFF.c: In function 'get_sequence': ./lib/pwm_searchPFF.c:303:5: warning: old-style function definition [-Wold-style-definition] 303 | int get_sequence(fp,seq_id,sequence) | ^~~~~~~~~~~~ ./lib/pwm_searchPFF.c: In function 'best_pull': ./lib/pwm_searchPFF.c:414:5: warning: old-style function definition [-Wold-style-definition] 414 | int best_pull(pargs,pbase,pstrand,pscore) | ^~~~~~~~~ ./lib/pwm_searchPFF.c: In function 'mark': ./lib/pwm_searchPFF.c:460:1: warning: old-style function definition [-Wold-style-definition] 460 | mark(width) | ^~~~ ./lib/pwm_searchPFF.c: In function 'output': ./lib/pwm_searchPFF.c:478:1: warning: old-style function definition [-Wold-style-definition] 478 | output(pargs,seqid,base,seq,strand,score, outfp) | ^~~~~~ ./lib/pwm_searchPFF.c: In function 'do_seq': ./lib/pwm_searchPFF.c:539:1: warning: old-style function definition [-Wold-style-definition] 539 | do_seq(pargs,pwm,seqid,seq,outfp) | ^~~~~~ ./lib/pwm_searchPFF.c: In function 'loop_on_seqs': ./lib/pwm_searchPFF.c:674:1: warning: old-style function definition [-Wold-style-definition] 674 | loop_on_seqs(pargs,pwm,fp, outfp) | ^~~~~~~~~~~~ rm -f ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.so aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libtfbs-perl-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong pwmsearch.o -o ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.so \ -lm \ /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. chmod 755 ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.so Manifying 1 pod document make[2]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds/Ext' Manifying 35 pod documents make[1]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' prove --blib t/01_Matrix.t t/02_Search.t t/03_DB_FlatFileDir.t t/05_DB_JASPAR.t t/06_SimplePFM.t t/07_AnnSpec.t t/07_Elph.t t/07_Gibbs.t t/07_MEME.t t/08_DB_LocalTRANSFAC.t t/09_Word_Consensus.t t/10_Tools_SetOperations.t Ext/t/*.t Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/01_Matrix.t ............... ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/02_Search.t ............... ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/03_DB_FlatFileDir.t ....... ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/05_DB_JASPAR.t ............ ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/06_SimplePFM.t ............ ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/07_AnnSpec.t .............. ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/07_Elph.t ................. ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/07_Gibbs.t ................ ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/07_MEME.t ................. ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/08_DB_LocalTRANSFAC.t ..... ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/09_Word_Consensus.t ....... ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/10_Tools_SetOperations.t .. ok Ext/t/pwmsearch.t ........... ok All tests successful. Files=13, Tests=45, 3 wallclock secs ( 0.05 usr 0.02 sys + 2.00 cusr 0.38 csys = 2.45 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libtfbs-perl/ make -j12 install DESTDIR=/build/reproducible-path/libtfbs-perl-0.7.1\+ds/debian/libtfbs-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' make[2]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds/Ext' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- pwmsearch.bs ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.bs 644 Manifying 1 pod document make[2]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds/Ext' Manifying 35 pod documents Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/auto/TFBS/Ext/pwmsearch/pwmsearch.so Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/auto/TFBS/Ext/pwmsearch/pwmsearch.bundle Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/pwm_searchPFF.c Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/pwm_search.h Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/MatrixSet.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/README.md Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/SitePair.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/TFFM.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/ConservationProfile.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Matrix.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Site.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/_Iterator.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Word.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/SiteSet.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/SitePairSet.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternI.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGenI.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Run/ConservationProfileGenerator.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/_Iterator/_SiteSetIterator.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/_Iterator/_MatrixSetIterator.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Word/Consensus.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Tools/SetOperations.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/AnnSpec.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/YMF.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/SimplePFM.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/MEME.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/Gibbs.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/Elph.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/YMF/Motif.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/Motif/Word.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/Motif/Matrix.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/MEME/Motif.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/Gibbs/Motif.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/Elph/Motif.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/AnnSpec/Motif.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Matrix/PFM.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Matrix/ICM.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Matrix/Alignment.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Matrix/_Alignment.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Matrix/PWM.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Ext/pwmsearch.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/FlatFileDir.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR7.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR4.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR5.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR6.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/TRANSFAC.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/LocalTRANSFAC.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR2.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::TFFM.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::Alignment.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR7.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR6.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR5.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Site.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR4.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::TRANSFAC.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::LocalTRANSFAC.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR2.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Word::Consensus.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Word.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::SiteSet.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::SitePairSet.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::SitePair.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternI.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::YMF::Motif.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::YMF.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::SimplePFM.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::MEME::Motif.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::MEME.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Gibbs::Motif.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Gibbs.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Elph::Motif.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Elph.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::AnnSpec::Motif.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::AnnSpec.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::MatrixSet.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::PWM.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::PFM.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::ICM.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Ext::pwmsearch.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::FlatFileDir.3pm make[1]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' dh_installdocs dh_installchangelogs debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' dh_installexamples mkdir -p debian/libtfbs-perl/usr/share/doc/libtfbs-perl/examples/Ext cp -a Ext/t debian/libtfbs-perl/usr/share/doc/libtfbs-perl/examples/Ext for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' dh_installman dh_lintian dh_perl dh_pdl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' dh_fixperms find debian -name pwmsearch.bundle -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libtfbs-perl-dbgsym' in '../libtfbs-perl-dbgsym_0.7.1+ds-5_arm64.deb'. dpkg-deb: building package 'libtfbs-perl' in '../libtfbs-perl_0.7.1+ds-5_arm64.deb'. dpkg-genbuildinfo --build=binary -O../libtfbs-perl_0.7.1+ds-5_arm64.buildinfo dpkg-genchanges --build=binary -O../libtfbs-perl_0.7.1+ds-5_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2250338 and its subdirectories I: Current time: Sun Sep 14 12:09:47 -12 2025 I: pbuilder-time-stamp: 1757894987 Mon Sep 15 00:09:48 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Mon Sep 15 00:09:48 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Mon Sep 15 00:09:48 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Mon Sep 15 00:09:48 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-Oxa3lV' ==================================================================================== Sun Oct 18 06:32:48 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "2 libtfbs-perl forky /srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy 0.7.1+ds-5" as arguments. Sun Oct 18 06:32:48 UTC 2026 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-chbPz1CA" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Oct 18 06:32:48 UTC 2026 I: Downloading source for forky/libtfbs-perl=0.7.1+ds-5 Reading package lists... NOTICE: 'libtfbs-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libtfbs-perl.git Please use: git clone https://salsa.debian.org/med-team/libtfbs-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 212 kB of source archives. Get:1 http://deb.debian.org/debian forky/main libtfbs-perl 0.7.1+ds-5 (dsc) [2429 B] Get:2 http://deb.debian.org/debian forky/main libtfbs-perl 0.7.1+ds-5 (tar) [196 kB] Get:3 http://deb.debian.org/debian forky/main libtfbs-perl 0.7.1+ds-5 (diff) [12.9 kB] Fetched 212 kB in 0s (18.0 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'libtfbs-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libtfbs-perl.git Please use: git clone https://salsa.debian.org/med-team/libtfbs-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 212 kB of source archives. Get:1 http://deb.debian.org/debian forky/main libtfbs-perl 0.7.1+ds-5 (dsc) [2429 B] Get:2 http://deb.debian.org/debian forky/main libtfbs-perl 0.7.1+ds-5 (tar) [196 kB] Get:3 http://deb.debian.org/debian forky/main libtfbs-perl 0.7.1+ds-5 (diff) [12.9 kB] Fetched 212 kB in 0s (18.0 MB/s) Download complete and in download only mode ============================================================================= Re-Building libtfbs-perl in forky on arm64 on codethink03-arm64 now. Date: Sun Oct 18 07:32:49 BST 2026 Date UTC: Sun Oct 18 06:32:49 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy/pbuilderrc_Lmur + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' libtfbs-perl = debian-installer -o libtfbs-perl = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' libtfbs-perl = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy/pbuilderrc_Lmur --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy/b2 --logfile b2/build.log libtfbs-perl_0.7.1+ds-5.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Oct 18 20:32:49 +14 2026 I: pbuilder-time-stamp: 1792305169 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libtfbs-perl_0.7.1+ds-5.dsc] I: copying [./libtfbs-perl_0.7.1+ds.orig.tar.xz] I: copying [./libtfbs-perl_0.7.1+ds-5.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libtfbs-perl_0.7.1+ds-5.dsc: no acceptable signature found dpkg-source: info: extracting libtfbs-perl in libtfbs-perl-0.7.1+ds dpkg-source: info: unpacking libtfbs-perl_0.7.1+ds.orig.tar.xz dpkg-source: info: unpacking libtfbs-perl_0.7.1+ds-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying configure.patch dpkg-source: info: applying spelling-errors.patch dpkg-source: info: applying dpkg-1.22.6.patch dpkg-source: info: applying gcc-14.patch dpkg-source: info: applying gcc-15.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1434176/tmp/hooks/D01_modify_environment starting debug: Running on codethink03-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 18 06:33 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1434176/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1434176/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=forky EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=0e211014d49f479da8d5818da77c2e57 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1434176 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy/pbuilderrc_Lmur --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy/b2 --logfile b2/build.log libtfbs-perl_0.7.1+ds-5.dsc' SUDO_GID=109 SUDO_HOME=/var/lib/jenkins SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1434176/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-pdl, perl:native, perl-xs-dev, pdl (>= 1:2.016), libcrypt-dev, bioperl, libwww-perl, libdbi-perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-pdl; however: Package dh-sequence-pdl is not installed. pbuilder-satisfydepends-dummy depends on perl:native. pbuilder-satisfydepends-dummy depends on perl-xs-dev; however: Package perl-xs-dev is not installed. pbuilder-satisfydepends-dummy depends on pdl (>= 1:2.016); however: Package pdl is not installed. pbuilder-satisfydepends-dummy depends on bioperl; however: Package bioperl is not installed. pbuilder-satisfydepends-dummy depends on libwww-perl; however: Package libwww-perl is not installed. pbuilder-satisfydepends-dummy depends on libdbi-perl; however: Package libdbi-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bioperl{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libarchive-zip-perl{a} libbio-perl-perl{a} libcapture-tiny-perl{a} libclass-data-inheritable-perl{a} libclone-perl{a} libdata-stag-perl{a} libdbi-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libelf1t64{a} libencode-locale-perl{a} libexception-class-perl{a} libfile-listing-perl{a} libfile-map-perl{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libnet-http-perl{a} libnet-ssleay-perl{a} libperl-dev{a} libpipeline1{a} libpod-parser-perl{a} libsub-exporter-progressive-perl{a} libsub-uplevel-perl{a} libterm-readkey-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml2-16{a} m4{a} man-db{a} netbase{a} openssl{a} pdl{a} perl-openssl-defaults{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: bioperl-run curl libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libcache-cache-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl libio-compress-brotli-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libpdl-filter-perl libpdl-fit-perl libpdl-graphics-trid-perl libpdl-gsl-perl libpdl-io-dicom-perl libpdl-io-envi-perl libpdl-io-gd-perl libpdl-io-hdf-perl libpdl-io-idl-perl libpdl-opt-simplex-perl libpdl-transform-proj4-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libterm-readline-gnu-perl libterm-readline-perl-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libyaml-perl lynx perl-doc perl-tk wget 0 packages upgraded, 78 newly installed, 0 to remove and 0 not upgraded. Need to get 22.5 MB of archives. After unpacking 84.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 netbase all 6.5 [12.4 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 openssl arm64 3.5.2-1 [1457 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 ca-certificates all 20250419 [162 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.1-2 [93.9 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 libdata-stag-perl all 0.14-3 [448 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 libbio-perl-perl all 1.7.8-2 [2498 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get: 23 http://deb.debian.org/debian forky/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 libtest-deep-perl all 1.205-1 [52.3 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 libtext-diff-perl all 1.45-2 [27.2 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 libtest-differences-perl all 0.71-1 [17.9 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 libtest-exception-perl all 0.43-3 [16.9 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 libtest-warn-perl all 0.37-2 [14.5 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 libtest-most-perl all 0.38-1 [25.1 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 bioperl all 1.7.8-2 [231 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.26 [91.8 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-5 [540 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 38 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 41 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 debhelper all 13.26 [939 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 libdbi-perl arm64 1.647-1 [856 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 56 http://deb.debian.org/debian forky/main arm64 libfile-map-perl arm64 0.71-2 [28.6 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 liburi-perl all 5.30-1 [105 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 libhtml-parser-perl arm64 3.83-1+b2 [97.5 kB] Get: 61 http://deb.debian.org/debian forky/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 64 http://deb.debian.org/debian forky/main arm64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B] Get: 68 http://deb.debian.org/debian forky/main arm64 libnet-ssleay-perl arm64 1.94-3 [323 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 libio-socket-ssl-perl all 2.095-1 [226 kB] Get: 70 http://deb.debian.org/debian forky/main arm64 libnet-http-perl all 6.23-1 [23.9 kB] Get: 71 http://deb.debian.org/debian forky/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 72 http://deb.debian.org/debian forky/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 73 http://deb.debian.org/debian forky/main arm64 libwww-perl all 6.78-1 [183 kB] Get: 74 http://deb.debian.org/debian forky/main arm64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 75 http://deb.debian.org/debian forky/main arm64 libperl-dev arm64 5.40.1-6 [1019 kB] Get: 76 http://deb.debian.org/debian forky/main arm64 libpod-parser-perl all 1.67-1 [94.1 kB] Get: 77 http://deb.debian.org/debian forky/main arm64 libterm-readkey-perl arm64 2.38-2+b4 [24.5 kB] Get: 78 http://deb.debian.org/debian forky/main arm64 pdl arm64 1:2.100-1 [2910 kB] Fetched 22.5 MB in 0s (123 MB/s) Preconfiguring packages ... Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../00-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.5.2-1_arm64.deb ... Unpacking openssl (3.5.2-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../03-ca-certificates_20250419_all.deb ... Unpacking ca-certificates (20250419) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../08-libuchardet0_0.0.8-2_arm64.deb ... 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Preparing to unpack .../67-libnet-ssleay-perl_1.94-3_arm64.deb ... Unpacking libnet-ssleay-perl:arm64 (1.94-3) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../68-libio-socket-ssl-perl_2.095-1_all.deb ... Unpacking libio-socket-ssl-perl (2.095-1) ... Selecting previously unselected package libnet-http-perl. Preparing to unpack .../69-libnet-http-perl_6.23-1_all.deb ... Unpacking libnet-http-perl (6.23-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../70-libtry-tiny-perl_0.32-1_all.deb ... Unpacking libtry-tiny-perl (0.32-1) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../71-libwww-robotrules-perl_6.02-1_all.deb ... Unpacking libwww-robotrules-perl (6.02-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../72-libwww-perl_6.78-1_all.deb ... Unpacking libwww-perl (6.78-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../73-liblwp-protocol-https-perl_6.14-1_all.deb ... Unpacking liblwp-protocol-https-perl (6.14-1) ... Selecting previously unselected package libperl-dev:arm64. Preparing to unpack .../74-libperl-dev_5.40.1-6_arm64.deb ... Unpacking libperl-dev:arm64 (5.40.1-6) ... Selecting previously unselected package libpod-parser-perl. Preparing to unpack .../75-libpod-parser-perl_1.67-1_all.deb ... Adding 'diversion of /usr/bin/podselect to /usr/bin/podselect.bundled by libpod-parser-perl' Adding 'diversion of /usr/share/man/man1/podselect.1.gz to /usr/share/man/man1/podselect.bundled.1.gz by libpod-parser-perl' Unpacking libpod-parser-perl (1.67-1) ... Selecting previously unselected package libterm-readkey-perl. Preparing to unpack .../76-libterm-readkey-perl_2.38-2+b4_arm64.deb ... Unpacking libterm-readkey-perl (2.38-2+b4) ... Selecting previously unselected package pdl. Preparing to unpack .../77-pdl_1%3a2.100-1_arm64.deb ... Unpacking pdl (1:2.100-1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libfile-which-perl (1.27-2) ... Setting up bsdextrautils (2.41.1-2) ... Setting up libtest-deep-perl (1.205-1) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libclone-perl:arm64 (0.47-1+b1) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.26) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up perl-openssl-defaults:arm64 (7+b2) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libperl-dev:arm64 (5.40.1-6) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.193-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20240727.1) ... Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libtext-diff-perl (1.45-2) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up libio-html-perl (1.004-3) ... Setting up libpod-parser-perl (1.67-1) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.50-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up dwz (0.16-2) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up netbase (6.5) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libbio-perl-perl (1.7.8-2) ... Setting up libterm-readkey-perl (2.38-2+b4) ... Setting up openssl (3.5.2-1) ... Setting up liburi-perl (5.30-1) ... Setting up libdbi-perl:arm64 (1.647-1) ... Setting up libnet-ssleay-perl:arm64 (1.94-3) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtool (2.5.4-5) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libtest-differences-perl (0.71-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libtest-exception-perl (0.43-3) ... Setting up libfile-map-perl (0.71-2) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-9) ... Setting up libhtml-parser-perl:arm64 (3.83-1+b2) ... Setting up libio-socket-ssl-perl (2.095-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libtest-most-perl (0.38-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up pdl (1:2.100-1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up bioperl (1.7.8-2) ... Setting up debhelper (13.26) ... Setting up libwww-perl (6.78-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1434176/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for forky I: user script /srv/workspace/pbuilder/1434176/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/libtfbs-perl-0.7.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libtfbs-perl_0.7.1+ds-5_source.changes dpkg-buildpackage: info: source package libtfbs-perl dpkg-buildpackage: info: source version 0.7.1+ds-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libtfbs-perl-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libtfbs-perl-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now" ------------------------------------------------- WARNING ------------------------------------------------- GD.pm does not seem to be installed. GD is reqired to produce "sequence logos" from information content matrices. If you need this functionality, please visit http://stein.cshl.org/WWW/software/GD/ for information on obtaining and installing GD. ------------------------------------------------- Do you have write access to a MySQL database server? [n] Checking if your kit is complete... Warning: the following files are missing in your kit: README Please inform the author. Writing MYMETA.yml and MYMETA.json Generating a Unix-style Makefile Writing Makefile for TFBS Writing MYMETA.yml and MYMETA.json dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' make[2]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds/Ext' "/usr/bin/perl" "/usr/share/perl/5.40.1/ExtUtils/xsubpp" -typemap '/usr/share/perl/5.40/ExtUtils/typemap' pwmsearch.xs > pwmsearch.xsc Running Mkbootstrap for pwmsearch () chmod 644 "pwmsearch.bs" Skip blib/lib/TFBS/PatternGen/AnnSpec/Motif.pm (unchanged) Skip blib/lib/TFBS/PatternGen/YMF/Motif.pm (unchanged) Skip blib/lib/TFBS/PatternGen/MEME/Motif.pm (unchanged) cp TFBS/ConservationProfile.pm blib/lib/TFBS/ConservationProfile.pm Skip blib/lib/TFBS/Site.pm (unchanged) Skip blib/lib/TFBS/PatternI.pm (unchanged) Skip blib/lib/TFBS/PatternGen/Motif/Word.pm (unchanged) Skip blib/lib/TFBS/PatternGen/MEME.pm (unchanged) Skip blib/lib/TFBS/PatternGen/Elph.pm (unchanged) Skip blib/lib/TFBS/Tools/SetOperations.pm (unchanged) cp TFBS/MatrixSet.pm blib/lib/TFBS/MatrixSet.pm Skip blib/lib/TFBS/PatternGen/Gibbs.pm (unchanged) cp TFBS/DB/TRANSFAC.pm blib/lib/TFBS/DB/TRANSFAC.pm Skip blib/lib/TFBS/DB/JASPAR2.pm (unchanged) Skip blib/lib/TFBS/PatternGen/SimplePFM.pm (unchanged) cp TFBS/Matrix/ICM.pm blib/lib/TFBS/Matrix/ICM.pm Skip blib/lib/TFBS/PatternGenI.pm (unchanged) cp TFBS/DB/JASPAR6.pm blib/lib/TFBS/DB/JASPAR6.pm Skip blib/lib/TFBS/SitePairSet.pm (unchanged) Skip blib/lib/TFBS/Matrix/_Alignment.pm (unchanged) Skip blib/lib/TFBS/DB/LocalTRANSFAC.pm (unchanged) Skip blib/lib/TFBS/SiteSet.pm (unchanged) Skip blib/lib/TFBS/PatternGen/Motif/Matrix.pm (unchanged) cp TFBS/DB/FlatFileDir.pm blib/lib/TFBS/DB/FlatFileDir.pm cp TFBS/Run/ConservationProfileGenerator.pm blib/lib/TFBS/Run/ConservationProfileGenerator.pm cp TFBS/PatternGen.pm blib/lib/TFBS/PatternGen.pm cp TFBS/DB/JASPAR4.pm blib/lib/TFBS/DB/JASPAR4.pm cp TFBS/DB/JASPAR.pm blib/lib/TFBS/DB/JASPAR.pm cp TFBS/Matrix.pm blib/lib/TFBS/Matrix.pm cp TFBS/PatternGen/YMF.pm blib/lib/TFBS/PatternGen/YMF.pm cp TFBS/PatternGen/AnnSpec.pm blib/lib/TFBS/PatternGen/AnnSpec.pm cp TFBS/DB/JASPAR7.pm blib/lib/TFBS/DB/JASPAR7.pm Skip blib/lib/TFBS/DB.pm (unchanged) cp TFBS/TFFM.pm blib/lib/TFBS/TFFM.pm cp TFBS/Matrix/PFM.pm blib/lib/TFBS/Matrix/PFM.pm cp TFBS/Matrix/Alignment.pm blib/lib/TFBS/Matrix/Alignment.pm Skip blib/lib/TFBS/PatternGen/Gibbs/Motif.pm (unchanged) cp TFBS/DB/JASPAR5.pm blib/lib/TFBS/DB/JASPAR5.pm cp TFBS/SitePair.pm blib/lib/TFBS/SitePair.pm cp TFBS/README.md blib/lib/TFBS/README.md Skip blib/lib/TFBS/PatternGen/Elph/Motif.pm (unchanged) Skip blib/lib/TFBS/Matrix/PWM.pm (unchanged) "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- pwmsearch.bs ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.bs 644 cp lib/pwm_searchPFF.c ../blib/lib/pwm_searchPFF.c Skip ../blib/lib/TFBS/Ext/pwmsearch.pm (unchanged) Skip ../blib/lib/pwm_search.h (unchanged) cp TFBS/_Iterator/_MatrixSetIterator.pm blib/lib/TFBS/_Iterator/_MatrixSetIterator.pm cp TFBS/_Iterator/_SiteSetIterator.pm blib/lib/TFBS/_Iterator/_SiteSetIterator.pm Skip blib/lib/TFBS/Word.pm (unchanged) Skip blib/lib/TFBS/Word/Consensus.pm (unchanged) Skip blib/lib/TFBS/_Iterator.pm (unchanged) Please specify prototyping behavior for pwmsearch.xs (see perlxs manual) mv pwmsearch.xsc pwmsearch.c aarch64-linux-gnu-gcc -c -I. -I./lib -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libtfbs-perl-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"0.2\" -DXS_VERSION=\"0.2\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" pwmsearch.c In file included from pwmsearch.xs:4: ./lib/pwm_searchPFF.c: In function 'announce': ./lib/pwm_searchPFF.c:44:1: warning: old-style function definition [-Wold-style-definition] 44 | announce(msg) | ^~~~~~~~ ./lib/pwm_searchPFF.c: In function 'err_log': ./lib/pwm_searchPFF.c:64:1: warning: old-style function definition [-Wold-style-definition] 64 | err_log(msg) | ^~~~~~~ ./lib/pwm_searchPFF.c: In function 'save_hit': ./lib/pwm_searchPFF.c:99:1: warning: old-style function definition [-Wold-style-definition] 99 | save_hit(base,strand,score,hits,pnhit) | ^~~~~~~~ ./lib/pwm_searchPFF.c: In function 'get_cmd_args': ./lib/pwm_searchPFF.c:222:5: warning: old-style function definition [-Wold-style-definition] 222 | int get_cmd_args(argc,argv,pargs) | ^~~~~~~~~~~~ ./lib/pwm_searchPFF.c: In function 'get_sequence': ./lib/pwm_searchPFF.c:303:5: warning: old-style function definition [-Wold-style-definition] 303 | int get_sequence(fp,seq_id,sequence) | ^~~~~~~~~~~~ ./lib/pwm_searchPFF.c: In function 'best_pull': ./lib/pwm_searchPFF.c:414:5: warning: old-style function definition [-Wold-style-definition] 414 | int best_pull(pargs,pbase,pstrand,pscore) | ^~~~~~~~~ ./lib/pwm_searchPFF.c: In function 'mark': ./lib/pwm_searchPFF.c:460:1: warning: old-style function definition [-Wold-style-definition] 460 | mark(width) | ^~~~ ./lib/pwm_searchPFF.c: In function 'output': ./lib/pwm_searchPFF.c:478:1: warning: old-style function definition [-Wold-style-definition] 478 | output(pargs,seqid,base,seq,strand,score, outfp) | ^~~~~~ ./lib/pwm_searchPFF.c: In function 'do_seq': ./lib/pwm_searchPFF.c:539:1: warning: old-style function definition [-Wold-style-definition] 539 | do_seq(pargs,pwm,seqid,seq,outfp) | ^~~~~~ ./lib/pwm_searchPFF.c: In function 'loop_on_seqs': ./lib/pwm_searchPFF.c:674:1: warning: old-style function definition [-Wold-style-definition] 674 | loop_on_seqs(pargs,pwm,fp, outfp) | ^~~~~~~~~~~~ rm -f ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.so aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libtfbs-perl-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong pwmsearch.o -o ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.so \ -lm \ /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. chmod 755 ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.so Manifying 1 pod document make[2]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds/Ext' Manifying 35 pod documents make[1]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' prove --blib t/01_Matrix.t t/02_Search.t t/03_DB_FlatFileDir.t t/05_DB_JASPAR.t t/06_SimplePFM.t t/07_AnnSpec.t t/07_Elph.t t/07_Gibbs.t t/07_MEME.t t/08_DB_LocalTRANSFAC.t t/09_Word_Consensus.t t/10_Tools_SetOperations.t Ext/t/*.t Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/01_Matrix.t ............... ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/02_Search.t ............... ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/03_DB_FlatFileDir.t ....... ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/05_DB_JASPAR.t ............ ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/06_SimplePFM.t ............ ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/07_AnnSpec.t .............. ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/07_Elph.t ................. ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/07_Gibbs.t ................ ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/07_MEME.t ................. ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/08_DB_LocalTRANSFAC.t ..... ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/09_Word_Consensus.t ....... ok Possible precedence issue with control flow operator (return) at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/10_Tools_SetOperations.t .. ok Ext/t/pwmsearch.t ........... ok All tests successful. Files=13, Tests=45, 3 wallclock secs ( 0.06 usr 0.04 sys + 2.45 cusr 0.48 csys = 3.03 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libtfbs-perl/ make -j12 install DESTDIR=/build/reproducible-path/libtfbs-perl-0.7.1\+ds/debian/libtfbs-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' make[2]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds/Ext' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- pwmsearch.bs ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.bs 644 Manifying 1 pod document make[2]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds/Ext' Manifying 35 pod documents Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/auto/TFBS/Ext/pwmsearch/pwmsearch.so Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/auto/TFBS/Ext/pwmsearch/pwmsearch.bundle Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/pwm_searchPFF.c Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/pwm_search.h Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/README.md Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/SitePair.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/TFFM.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Matrix.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/MatrixSet.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/ConservationProfile.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Site.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/_Iterator.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Word.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/SiteSet.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/SitePairSet.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternI.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGenI.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Run/ConservationProfileGenerator.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/_Iterator/_SiteSetIterator.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/_Iterator/_MatrixSetIterator.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Word/Consensus.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Tools/SetOperations.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/AnnSpec.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/YMF.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/SimplePFM.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/MEME.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/Gibbs.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/Elph.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/YMF/Motif.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/Motif/Word.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/Motif/Matrix.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/MEME/Motif.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/Gibbs/Motif.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/Elph/Motif.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/AnnSpec/Motif.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Matrix/Alignment.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Matrix/PFM.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Matrix/ICM.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Matrix/_Alignment.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Matrix/PWM.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Ext/pwmsearch.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR5.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR7.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR4.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/FlatFileDir.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR6.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/TRANSFAC.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/LocalTRANSFAC.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR2.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::TFFM.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::Alignment.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR7.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR6.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR5.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Site.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR4.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::TRANSFAC.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::LocalTRANSFAC.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR2.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Word::Consensus.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Word.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::SiteSet.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::SitePairSet.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::SitePair.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternI.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::YMF::Motif.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::YMF.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::SimplePFM.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::MEME::Motif.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::MEME.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Gibbs::Motif.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Gibbs.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Elph::Motif.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Elph.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::AnnSpec::Motif.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::AnnSpec.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::MatrixSet.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::PWM.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::PFM.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::ICM.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Ext::pwmsearch.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::FlatFileDir.3pm make[1]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' dh_installdocs dh_installchangelogs debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' dh_installexamples mkdir -p debian/libtfbs-perl/usr/share/doc/libtfbs-perl/examples/Ext cp -a Ext/t debian/libtfbs-perl/usr/share/doc/libtfbs-perl/examples/Ext for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' dh_installman dh_lintian dh_perl dh_pdl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' dh_fixperms find debian -name pwmsearch.bundle -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libtfbs-perl' in '../libtfbs-perl_0.7.1+ds-5_arm64.deb'. dpkg-deb: building package 'libtfbs-perl-dbgsym' in '../libtfbs-perl-dbgsym_0.7.1+ds-5_arm64.deb'. dpkg-genbuildinfo --build=binary -O../libtfbs-perl_0.7.1+ds-5_arm64.buildinfo dpkg-genchanges --build=binary -O../libtfbs-perl_0.7.1+ds-5_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1434176/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1434176/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1434176 and its subdirectories I: Current time: Sun Oct 18 20:33:38 +14 2026 I: pbuilder-time-stamp: 1792305218 + false + set +x Sun Oct 18 06:33:38 UTC 2026 I: Signing ./b2/libtfbs-perl_0.7.1+ds-5_arm64.buildinfo as libtfbs-perl_0.7.1+ds-5_arm64.buildinfo.asc Sun Oct 18 06:33:38 UTC 2026 I: Signed ./b2/libtfbs-perl_0.7.1+ds-5_arm64.buildinfo as ./b2/libtfbs-perl_0.7.1+ds-5_arm64.buildinfo.asc Sun Oct 18 06:33:38 UTC 2026 - build #2 for libtfbs-perl/forky/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Sun Oct 18 06:33:38 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-chbPz1CA, removing. /srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy: total 80 drwxrwxr-x 2 jenkins jenkins 4096 Sep 15 00:09 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 15 00:10 b2 -rw-rw-r-- 1 jenkins jenkins 2429 Sep 11 21:13 libtfbs-perl_0.7.1+ds-5.dsc -rw------- 1 jenkins jenkins 65101 Sep 15 00:09 rbuildlog.kdm6gN1 /srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy/b1: total 368 -rw-r--r-- 1 jenkins jenkins 61213 Sep 15 00:09 build.log -rw-r--r-- 1 jenkins jenkins 35260 Sep 15 00:09 libtfbs-perl-dbgsym_0.7.1+ds-5_arm64.deb -rw-r--r-- 1 jenkins jenkins 12884 Sep 15 00:09 libtfbs-perl_0.7.1+ds-5.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2429 Sep 15 00:09 libtfbs-perl_0.7.1+ds-5.dsc -rw-r--r-- 1 jenkins jenkins 6484 Sep 15 00:09 libtfbs-perl_0.7.1+ds-5_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7366 Sep 15 00:09 libtfbs-perl_0.7.1+ds-5_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2002 Sep 15 00:09 libtfbs-perl_0.7.1+ds-5_arm64.changes -rw-r--r-- 1 jenkins jenkins 224624 Sep 15 00:09 libtfbs-perl_0.7.1+ds-5_arm64.deb -rw-r--r-- 1 jenkins jenkins 1847 Sep 15 00:09 libtfbs-perl_0.7.1+ds-5_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy/b2: total 364 -rw-rw-r-- 1 jenkins jenkins 63150 Sep 15 00:10 build.log -rw-r--r-- 1 jenkins jenkins 35260 Sep 15 00:10 libtfbs-perl-dbgsym_0.7.1+ds-5_arm64.deb -rw-r--r-- 1 jenkins jenkins 12884 Sep 15 00:10 libtfbs-perl_0.7.1+ds-5.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2429 Sep 15 00:10 libtfbs-perl_0.7.1+ds-5.dsc -rw-rw-r-- 1 jenkins jenkins 6484 Sep 15 00:10 libtfbs-perl_0.7.1+ds-5_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7366 Sep 15 00:10 libtfbs-perl_0.7.1+ds-5_arm64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 2002 Sep 15 00:10 libtfbs-perl_0.7.1+ds-5_arm64.changes -rw-r--r-- 1 jenkins jenkins 224624 Sep 15 00:10 libtfbs-perl_0.7.1+ds-5_arm64.deb -rw-rw-r-- 1 jenkins jenkins 1847 Sep 15 00:10 libtfbs-perl_0.7.1+ds-5_source.changes Mon Sep 15 00:10:39 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Mon Sep 15 00:10:40 UTC 2025 I: libtfbs-perl_0.7.1+ds-5_arm64.changes: Format: 1.8 Date: Thu, 11 Sep 2025 22:40:14 +0200 Source: libtfbs-perl Binary: libtfbs-perl libtfbs-perl-dbgsym Architecture: arm64 Version: 0.7.1+ds-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libtfbs-perl - scanning DNA sequence with a position weight matrix Closes: 1097278 1102835 Changes: libtfbs-perl (0.7.1+ds-5) unstable; urgency=medium . * Team upload. * gcc-15.patch: new: fix ftbfs with gcc-15. (Closes: #1097278) * d/control: approach cross-buildability. This change introduces perl-xs-dev and libcrypt-dev to build dependencies, the latter being needed soon once out of the essential set. In addition, some filtering is implemented and the perl interpreter is requested for the native architecture. Thanks to Helmut Grohne (Closes: #1102835) * d/control: declare compliance to standards version 4.7.2. * d/watch: move to format version 5. * d/salsa-ci.yml: new: configure CI. Checksums-Sha1: f4a75f965790bf98c56d8e4558e2b776c402217a 35260 libtfbs-perl-dbgsym_0.7.1+ds-5_arm64.deb 516c82e574cbb36381628a60ff8b13940e24532f 6484 libtfbs-perl_0.7.1+ds-5_arm64.buildinfo 90e4a30437063bd708ec90d1e14627e6e7202248 224624 libtfbs-perl_0.7.1+ds-5_arm64.deb Checksums-Sha256: 21bfc5be8668f323bb4115c0aba936027531ffc0261e151cb4549ac13775e063 35260 libtfbs-perl-dbgsym_0.7.1+ds-5_arm64.deb 82d6b485356b637d81007815c4c8ace17353b67c35153c0b6d4a3882c0fbb82a 6484 libtfbs-perl_0.7.1+ds-5_arm64.buildinfo 5352cea439e6d434f56ae0c0eaa72a26f34e03ea35b81b1fdbb4c76270d4f7b5 224624 libtfbs-perl_0.7.1+ds-5_arm64.deb Files: b55847cabf3893c0dca594d2d97d8ad8 35260 debug optional libtfbs-perl-dbgsym_0.7.1+ds-5_arm64.deb ef8d304e15429bce3253f2a49e1347c3 6484 perl optional libtfbs-perl_0.7.1+ds-5_arm64.buildinfo 1fd2e6ca124913564e0a222449962d4c 224624 perl optional libtfbs-perl_0.7.1+ds-5_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/arm64/libtfbs-perl_0.7.1+ds-4.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/arm64/libtfbs-perl_0.7.1+ds-4.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/arm64/libtfbs-perl_0.7.1+ds-4.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/arm64/libtfbs-perl_0.7.1+ds-4.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/forky/arm64/libtfbs-perl_0.7.1+ds-4_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/arm64/libtfbs-perl_0.7.1+ds-4.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-09-15 00:09:47.649720838 +0000 +++ b2/build.log 2025-09-15 00:10:39.745786079 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Sep 14 12:09:01 -12 2025 -I: pbuilder-time-stamp: 1757894941 +I: Current time: Sun Oct 18 20:32:49 +14 2026 +I: pbuilder-time-stamp: 1792305169 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -29,53 +29,85 @@ dpkg-source: info: applying gcc-15.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2250338/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1434176/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 18 06:33 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1434176/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1434176/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='ff9407c160b9471cba2c8cc2b64ff578' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2250338' - PS1='# ' - PS2='> ' + INVOCATION_ID=0e211014d49f479da8d5818da77c2e57 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1434176 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy/pbuilderrc_2YJP --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy/b1 --logfile b1/build.log libtfbs-perl_0.7.1+ds-5.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy/pbuilderrc_Lmur --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy/b2 --logfile b2/build.log libtfbs-perl_0.7.1+ds-5.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2250338/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1434176/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -202,7 +234,7 @@ Get: 76 http://deb.debian.org/debian forky/main arm64 libpod-parser-perl all 1.67-1 [94.1 kB] Get: 77 http://deb.debian.org/debian forky/main arm64 libterm-readkey-perl arm64 2.38-2+b4 [24.5 kB] Get: 78 http://deb.debian.org/debian forky/main arm64 pdl arm64 1:2.100-1 [2910 kB] -Fetched 22.5 MB in 0s (65.7 MB/s) +Fetched 22.5 MB in 0s (123 MB/s) Preconfiguring packages ... Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) @@ -538,7 +570,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libtfbs-perl-0.7.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libtfbs-perl_0.7.1+ds-5_source.changes +I: user script /srv/workspace/pbuilder/1434176/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/1434176/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libtfbs-perl-0.7.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libtfbs-perl_0.7.1+ds-5_source.changes dpkg-buildpackage: info: source package libtfbs-perl dpkg-buildpackage: info: source version 0.7.1+ds-5 dpkg-buildpackage: info: source distribution unstable @@ -580,63 +616,63 @@ make -j12 make[1]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' make[2]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds/Ext' -Running Mkbootstrap for pwmsearch () "/usr/bin/perl" "/usr/share/perl/5.40.1/ExtUtils/xsubpp" -typemap '/usr/share/perl/5.40/ExtUtils/typemap' pwmsearch.xs > pwmsearch.xsc +Running Mkbootstrap for pwmsearch () chmod 644 "pwmsearch.bs" -Skip blib/lib/TFBS/PatternGen/Motif/Matrix.pm (unchanged) -cp TFBS/Matrix/Alignment.pm blib/lib/TFBS/Matrix/Alignment.pm -Skip blib/lib/TFBS/PatternGen/YMF/Motif.pm (unchanged) -cp TFBS/Run/ConservationProfileGenerator.pm blib/lib/TFBS/Run/ConservationProfileGenerator.pm -cp TFBS/DB/TRANSFAC.pm blib/lib/TFBS/DB/TRANSFAC.pm Skip blib/lib/TFBS/PatternGen/AnnSpec/Motif.pm (unchanged) +Skip blib/lib/TFBS/PatternGen/YMF/Motif.pm (unchanged) +Skip blib/lib/TFBS/PatternGen/MEME/Motif.pm (unchanged) +cp TFBS/ConservationProfile.pm blib/lib/TFBS/ConservationProfile.pm +Skip blib/lib/TFBS/Site.pm (unchanged) +Skip blib/lib/TFBS/PatternI.pm (unchanged) +Skip blib/lib/TFBS/PatternGen/Motif/Word.pm (unchanged) Skip blib/lib/TFBS/PatternGen/MEME.pm (unchanged) -cp TFBS/Matrix.pm blib/lib/TFBS/Matrix.pm +Skip blib/lib/TFBS/PatternGen/Elph.pm (unchanged) +Skip blib/lib/TFBS/Tools/SetOperations.pm (unchanged) +cp TFBS/MatrixSet.pm blib/lib/TFBS/MatrixSet.pm +Skip blib/lib/TFBS/PatternGen/Gibbs.pm (unchanged) +cp TFBS/DB/TRANSFAC.pm blib/lib/TFBS/DB/TRANSFAC.pm Skip blib/lib/TFBS/DB/JASPAR2.pm (unchanged) -cp TFBS/DB/JASPAR6.pm blib/lib/TFBS/DB/JASPAR6.pm -Skip blib/lib/TFBS/PatternGen/MEME/Motif.pm (unchanged) Skip blib/lib/TFBS/PatternGen/SimplePFM.pm (unchanged) cp TFBS/Matrix/ICM.pm blib/lib/TFBS/Matrix/ICM.pm -Skip blib/lib/TFBS/PatternGen/Motif/Word.pm (unchanged) -cp TFBS/DB/JASPAR.pm blib/lib/TFBS/DB/JASPAR.pm -cp TFBS/ConservationProfile.pm blib/lib/TFBS/ConservationProfile.pm -cp TFBS/TFFM.pm blib/lib/TFBS/TFFM.pm -Skip blib/lib/TFBS/PatternI.pm (unchanged) Skip blib/lib/TFBS/PatternGenI.pm (unchanged) -cp TFBS/Matrix/PFM.pm blib/lib/TFBS/Matrix/PFM.pm -cp TFBS/SitePair.pm blib/lib/TFBS/SitePair.pm -cp TFBS/PatternGen/YMF.pm blib/lib/TFBS/PatternGen/YMF.pm -Skip blib/lib/TFBS/PatternGen/Gibbs/Motif.pm (unchanged) -Skip blib/lib/TFBS/Matrix/PWM.pm (unchanged) +cp TFBS/DB/JASPAR6.pm blib/lib/TFBS/DB/JASPAR6.pm +Skip blib/lib/TFBS/SitePairSet.pm (unchanged) +Skip blib/lib/TFBS/Matrix/_Alignment.pm (unchanged) Skip blib/lib/TFBS/DB/LocalTRANSFAC.pm (unchanged) -cp TFBS/DB/JASPAR5.pm blib/lib/TFBS/DB/JASPAR5.pm -Skip blib/lib/TFBS/PatternGen/Gibbs.pm (unchanged) -cp TFBS/README.md blib/lib/TFBS/README.md -cp TFBS/DB/JASPAR4.pm blib/lib/TFBS/DB/JASPAR4.pm -Skip blib/lib/TFBS/PatternGen/Elph.pm (unchanged) -cp TFBS/DB/JASPAR7.pm blib/lib/TFBS/DB/JASPAR7.pm -Skip blib/lib/TFBS/PatternGen/Elph/Motif.pm (unchanged) Skip blib/lib/TFBS/SiteSet.pm (unchanged) -Skip blib/lib/TFBS/Site.pm (unchanged) -Skip blib/lib/TFBS/Matrix/_Alignment.pm (unchanged) +Skip blib/lib/TFBS/PatternGen/Motif/Matrix.pm (unchanged) cp TFBS/DB/FlatFileDir.pm blib/lib/TFBS/DB/FlatFileDir.pm +cp TFBS/Run/ConservationProfileGenerator.pm blib/lib/TFBS/Run/ConservationProfileGenerator.pm cp TFBS/PatternGen.pm blib/lib/TFBS/PatternGen.pm -cp TFBS/MatrixSet.pm blib/lib/TFBS/MatrixSet.pm -Skip blib/lib/TFBS/SitePairSet.pm (unchanged) +cp TFBS/DB/JASPAR4.pm blib/lib/TFBS/DB/JASPAR4.pm +cp TFBS/DB/JASPAR.pm blib/lib/TFBS/DB/JASPAR.pm +cp TFBS/Matrix.pm blib/lib/TFBS/Matrix.pm +cp TFBS/PatternGen/YMF.pm blib/lib/TFBS/PatternGen/YMF.pm cp TFBS/PatternGen/AnnSpec.pm blib/lib/TFBS/PatternGen/AnnSpec.pm +cp TFBS/DB/JASPAR7.pm blib/lib/TFBS/DB/JASPAR7.pm Skip blib/lib/TFBS/DB.pm (unchanged) -Skip blib/lib/TFBS/Tools/SetOperations.pm (unchanged) +cp TFBS/TFFM.pm blib/lib/TFBS/TFFM.pm +cp TFBS/Matrix/PFM.pm blib/lib/TFBS/Matrix/PFM.pm +cp TFBS/Matrix/Alignment.pm blib/lib/TFBS/Matrix/Alignment.pm +Skip blib/lib/TFBS/PatternGen/Gibbs/Motif.pm (unchanged) +cp TFBS/DB/JASPAR5.pm blib/lib/TFBS/DB/JASPAR5.pm +cp TFBS/SitePair.pm blib/lib/TFBS/SitePair.pm +cp TFBS/README.md blib/lib/TFBS/README.md +Skip blib/lib/TFBS/PatternGen/Elph/Motif.pm (unchanged) +Skip blib/lib/TFBS/Matrix/PWM.pm (unchanged) "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- pwmsearch.bs ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.bs 644 -Skip ../blib/lib/TFBS/Ext/pwmsearch.pm (unchanged) cp lib/pwm_searchPFF.c ../blib/lib/pwm_searchPFF.c +Skip ../blib/lib/TFBS/Ext/pwmsearch.pm (unchanged) Skip ../blib/lib/pwm_search.h (unchanged) -Please specify prototyping behavior for pwmsearch.xs (see perlxs manual) -mv pwmsearch.xsc pwmsearch.c -aarch64-linux-gnu-gcc -c -I. -I./lib -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libtfbs-perl-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"0.2\" -DXS_VERSION=\"0.2\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" pwmsearch.c cp TFBS/_Iterator/_MatrixSetIterator.pm blib/lib/TFBS/_Iterator/_MatrixSetIterator.pm -Skip blib/lib/TFBS/Word.pm (unchanged) -Skip blib/lib/TFBS/_Iterator.pm (unchanged) cp TFBS/_Iterator/_SiteSetIterator.pm blib/lib/TFBS/_Iterator/_SiteSetIterator.pm +Skip blib/lib/TFBS/Word.pm (unchanged) Skip blib/lib/TFBS/Word/Consensus.pm (unchanged) +Skip blib/lib/TFBS/_Iterator.pm (unchanged) +Please specify prototyping behavior for pwmsearch.xs (see perlxs manual) +mv pwmsearch.xsc pwmsearch.c +aarch64-linux-gnu-gcc -c -I. -I./lib -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libtfbs-perl-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"0.2\" -DXS_VERSION=\"0.2\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" pwmsearch.c In file included from pwmsearch.xs:4: ./lib/pwm_searchPFF.c: In function 'announce': ./lib/pwm_searchPFF.c:44:1: warning: old-style function definition [-Wold-style-definition] @@ -720,7 +756,7 @@ t/10_Tools_SetOperations.t .. ok Ext/t/pwmsearch.t ........... ok All tests successful. -Files=13, Tests=45, 3 wallclock secs ( 0.05 usr 0.02 sys + 2.00 cusr 0.38 csys = 2.45 CPU) +Files=13, Tests=45, 3 wallclock secs ( 0.06 usr 0.04 sys + 2.45 cusr 0.48 csys = 3.03 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' create-stamp debian/debhelper-build-stamp @@ -738,13 +774,13 @@ Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/auto/TFBS/Ext/pwmsearch/pwmsearch.bundle Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/pwm_searchPFF.c Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/pwm_search.h -Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/MatrixSet.pm -Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/README.md Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/SitePair.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/TFFM.pm -Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/ConservationProfile.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Matrix.pm +Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen.pm +Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/MatrixSet.pm +Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/ConservationProfile.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Site.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/_Iterator.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Word.pm @@ -771,17 +807,17 @@ Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/Gibbs/Motif.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/Elph/Motif.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/PatternGen/AnnSpec/Motif.pm +Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Matrix/Alignment.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Matrix/PFM.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Matrix/ICM.pm -Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Matrix/Alignment.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Matrix/_Alignment.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Matrix/PWM.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/Ext/pwmsearch.pm -Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/FlatFileDir.pm -Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR7.pm -Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR4.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR5.pm +Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR7.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR.pm +Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR4.pm +Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/FlatFileDir.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/JASPAR6.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/TRANSFAC.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/TFBS/DB/LocalTRANSFAC.pm @@ -859,8 +895,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'libtfbs-perl-dbgsym' in '../libtfbs-perl-dbgsym_0.7.1+ds-5_arm64.deb'. dpkg-deb: building package 'libtfbs-perl' in '../libtfbs-perl_0.7.1+ds-5_arm64.deb'. +dpkg-deb: building package 'libtfbs-perl-dbgsym' in '../libtfbs-perl-dbgsym_0.7.1+ds-5_arm64.deb'. dpkg-genbuildinfo --build=binary -O../libtfbs-perl_0.7.1+ds-5_arm64.buildinfo dpkg-genchanges --build=binary -O../libtfbs-perl_0.7.1+ds-5_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -868,12 +904,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1434176/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1434176/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2250338 and its subdirectories -I: Current time: Sun Sep 14 12:09:47 -12 2025 -I: pbuilder-time-stamp: 1757894987 +I: removing directory /srv/workspace/pbuilder/1434176 and its subdirectories +I: Current time: Sun Oct 18 20:33:38 +14 2026 +I: pbuilder-time-stamp: 1792305218 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/arm64/libtfbs-perl_0.7.1+ds-5.diff: 77.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/arm64/libtfbs-perl_0.7.1+ds-5.diff.gz b2/build.log: 81.7% -- replaced with stdout Compressing the 1st log... b1/build.log: 82.1% -- replaced with stdout Mon Sep 15 00:10:40 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_libtfbs-perl_forky_arm64_1757895040 + touch /var/log/reproducible-builds/diffoscope_stamp_libtfbs-perl_forky_arm64_1757895040 + RESULT=0 + systemd-run '--description=diffoscope on libtfbs-perl/0.7.1+ds-5 in forky/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_8-88957 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy --run-session -c jenkins-reproducible-forky-diffoscope-5e39bcd9-063d-4b27-81bb-44b950705da2 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy/dbd-tmp-bhNpREF ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy/libtfbs-perl_0.7.1+ds-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy/libtfbs-perl_0.7.1+ds-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy/libtfbs-perl_0.7.1+ds-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy/b1/libtfbs-perl_0.7.1+ds-5_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy/b2/libtfbs-perl_0.7.1+ds-5_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_8-88957.service; invocation ID: f6890b93560f4dbda9f76ec7b43295f9 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy/libtfbs-perl_0.7.1+ds-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy/libtfbs-perl_0.7.1+ds-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy/libtfbs-perl_0.7.1+ds-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy/b1/libtfbs-perl_0.7.1+ds-5_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.h1ygDXIy/b2/libtfbs-perl_0.7.1+ds-5_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 202ms CPU time consumed: 175ms Memory peak: 17.5M (swap: 0B) _ _ _ _ __ _ _ | (_) |__ | |_ / _| |__ ___ _ __ ___ _ __| | | | | '_ \| __| |_| '_ \/ __|_____| '_ \ / _ \ '__| | | | | |_) | |_| _| |_) \__ \_____| |_) | __/ | | | |_|_|_.__/ \__|_| |_.__/|___/ | .__/ \___|_| |_| |_| Mon Sep 15 00:10:41 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Mon Sep 15 00:10:41 UTC 2025 I: libtfbs-perl from forky built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-09-15 00:10:41] INFO: Starting at 2025-09-15 00:10:41.780756 [2025-09-15 00:10:41] INFO: Generating the pages of 1 package(s) [2025-09-15 00:10:42] CRITICAL: https://tests.reproducible-builds.org/debian/forky/arm64/libtfbs-perl didn't produce a buildlog, even though it has been built. [2025-09-15 00:10:42] INFO: Finished at 2025-09-15 00:10:42.062358, took: 0:00:00.281605 Mon Sep 15 00:10:42 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/forky/arm64/libtfbs-perl.html Mon Sep 15 00:10:42 UTC 2025 I: Removing signed libtfbs-perl_0.7.1+ds-5_arm64.buildinfo.asc files: removed './b1/libtfbs-perl_0.7.1+ds-5_arm64.buildinfo.asc' removed './b2/libtfbs-perl_0.7.1+ds-5_arm64.buildinfo.asc' 1757895042 arm64 forky libtfbs-perl Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/arm64/libtfbs-perl_0.7.1+ds-5.rbuild.log: 79.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/arm64/libtfbs-perl_0.7.1+ds-5.rbuild.log.gz [2025-09-15 00:10:42] INFO: Starting at 2025-09-15 00:10:42.395804 [2025-09-15 00:10:42] INFO: Generating the pages of 1 package(s) [2025-09-15 00:10:42] INFO: Finished at 2025-09-15 00:10:42.668652, took: 0:00:00.272853 All cleanup done. Mon Sep 15 00:10:42 UTC 2025 - total duration: 0h 1m 57s. Mon Sep 15 00:10:42 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-6CHWYSFu, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 1min 58.118s CPU time consumed: 3.128s Memory peak: 39.7M (swap: 0B)