Running as unit: rb-build-arm64_9-78989.service ==================================================================================== Thu Jun 5 14:36:38 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_9) on jenkins, called using "codethink04-arm64 codethink03-arm64" as arguments. Thu Jun 5 14:36:38 UTC 2025 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-F3jNMvUt" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Jun 5 14:36:38 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Thu Jun 5 14:36:38 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-gCjdzv' Thu Jun 5 14:36:39 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Thu Jun 5 14:36:39 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-Q8NxrC' ok, let's check if librg-blast-parser-perl is building anywhere yet… ok, librg-blast-parser-perl is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of librg-blast-parser-perl in unstable on arm64 on jenkins now. 1st build will be done on codethink04-arm64.debian.net. 2nd build will be done on codethink03-arm64.debian.net. ============================================================================= Thu Jun 5 14:36:57 UTC 2025 I: starting to build librg-blast-parser-perl/unstable/arm64 on jenkins on '2025-06-05 14:36' Thu Jun 5 14:36:57 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_9/78989/console.log 1749134217 arm64 unstable librg-blast-parser-perl Thu Jun 5 14:36:57 UTC 2025 I: Downloading source for unstable/librg-blast-parser-perl=0.03-9 --2025-06-05 14:36:58-- http://deb.debian.org/debian/pool/main/libr/librg-blast-parser-perl/librg-blast-parser-perl_0.03-9.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2361 (2.3K) [text/prs.lines.tag] Saving to: ‘librg-blast-parser-perl_0.03-9.dsc’ 0K .. 100% 300M=0s 2025-06-05 14:36:58 (300 MB/s) - ‘librg-blast-parser-perl_0.03-9.dsc’ saved [2361/2361] --2025-06-05 14:36:58-- http://deb.debian.org/debian/pool/main/libr/librg-blast-parser-perl/librg-blast-parser-perl_0.03-9.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2361 (2.3K) [text/prs.lines.tag] Saving to: ‘librg-blast-parser-perl_0.03-9.dsc’ 0K .. 100% 300M=0s 2025-06-05 14:36:58 (300 MB/s) - ‘librg-blast-parser-perl_0.03-9.dsc’ saved [2361/2361] Thu Jun 5 14:36:58 UTC 2025 I: librg-blast-parser-perl_0.03-9.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: librg-blast-parser-perl Binary: librg-blast-parser-perl Architecture: any Version: 0.03-9 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Andreas Tille Homepage: https://rostlab.org/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/librg-blast-parser-perl Vcs-Git: https://salsa.debian.org/med-team/librg-blast-parser-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13), libextutils-xspp-perl, librostlab-blast0-dev (>= 1.0.1-12), librostlab3-dev, debhelper Package-List: librg-blast-parser-perl deb perl optional arch=any Checksums-Sha1: 70dde0ef7c45b2e633b2c4c738d384be6b4a0483 11635 librg-blast-parser-perl_0.03.orig.tar.gz 01157df79a0f0d181ac833ac0560f44170b8d942 6132 librg-blast-parser-perl_0.03-9.debian.tar.xz Checksums-Sha256: 215ecf7417de5ceedafc6466bd77b54ede07aab514bf3e5a0ea7245d509746cb 11635 librg-blast-parser-perl_0.03.orig.tar.gz 53957dce204a85e9e7152be04d295b16e310a050babc45d0faec2fa8cb84c0a4 6132 librg-blast-parser-perl_0.03-9.debian.tar.xz Files: 8dc732930465144a0affcb9ba38a9df9 11635 librg-blast-parser-perl_0.03.orig.tar.gz dbc5a14b9df795756bb011c1c2fd1146 6132 librg-blast-parser-perl_0.03-9.debian.tar.xz Dgit: 8d27bfcbcd341745269db698c553371b66ba681c debian archive/debian/0.03-9 https://git.dgit.debian.org/librg-blast-parser-perl -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmM2yHgUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdphdhAAmy9ZZdZuk4KL59lv42ugK2hLvpnb jazxdC6GlZHVa1zLzQUyTNDrqxlO6hDtRTWK3ZgZQFnbtlle3QRS97Q33iWS34ZK IoC7QXlULGpvoW4QTxCkXPLtZ1G3/dobPUz8Tyb+qG/SFUKxo5jy83bMM+ahZ1ya 6mSra2jagUsvEY35jinFjJh1mZFhfEYtWGQuS00x8afF209aiMi54qFfQCKtqMVs Cap7ouz4kaJmnClo/GBPxNryXlurxiZ8iOHsFAEn+JYvs1atlQG2pomTYJxTSteC kyVBjC4wl3W0CaEECctrDwUFLl1wVeAiJQHR2QgqL1t9Erli8rAs5ZqOBnK4QCij K+rPp3s8ozjxt3vzB19NkomsJHxFlMIkMfOtRflqJvaA1OhWesdF1Z5KUv2/ssa+ ZkIikRtBG0l9kNcTZRKuXjGbiyRZwyMYl80+jWgzngNY3TCrREQm/4dZ73KzH6OL 7GXV4Uf9mGiFD9dufk5kR8obzFbApMCdL/o8Y2OhxFJ0w+P6l/fZllZVZdIgnsqv nrY/cK/GS2N+EtZqm6ls+wMCmAhQ9/D9UCRpto8mtszI45yyhCl3tM+XWM35cFs/ GpDovPo+PkdbN/UX/2OwKm7S/RKICABKCEwvR850X9UoVJ5Sxa1jgpiAh37BQ2Ei ZT57hmY95Ckr79E= =+DVx -----END PGP SIGNATURE----- Thu Jun 5 14:36:58 UTC 2025 I: Checking whether the package is not for us Thu Jun 5 14:36:58 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Thu Jun 5 14:36:58 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Thu Jun 5 14:36:58 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Thu Jun 5 14:36:58 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-aI82Vw' ==================================================================================== Thu Jun 5 14:36:59 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "1 librg-blast-parser-perl unstable /srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB 0.03-9" as arguments. Thu Jun 5 14:36:59 UTC 2025 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-AZqGwzmU" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Jun 5 14:36:59 UTC 2025 I: Downloading source for unstable/librg-blast-parser-perl=0.03-9 Reading package lists... NOTICE: 'librg-blast-parser-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/librg-blast-parser-perl.git Please use: git clone https://salsa.debian.org/med-team/librg-blast-parser-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 20.1 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main librg-blast-parser-perl 0.03-9 (dsc) [2361 B] Get:2 http://deb.debian.org/debian unstable/main librg-blast-parser-perl 0.03-9 (tar) [11.6 kB] Get:3 http://deb.debian.org/debian unstable/main librg-blast-parser-perl 0.03-9 (diff) [6132 B] Fetched 20.1 kB in 0s (322 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'librg-blast-parser-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/librg-blast-parser-perl.git Please use: git clone https://salsa.debian.org/med-team/librg-blast-parser-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 20.1 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main librg-blast-parser-perl 0.03-9 (dsc) [2361 B] Get:2 http://deb.debian.org/debian unstable/main librg-blast-parser-perl 0.03-9 (tar) [11.6 kB] Get:3 http://deb.debian.org/debian unstable/main librg-blast-parser-perl 0.03-9 (diff) [6132 B] Fetched 20.1 kB in 0s (322 kB/s) Download complete and in download only mode ============================================================================= Building librg-blast-parser-perl in unstable on arm64 on codethink04-arm64 now. Date: Thu Jun 5 15:37:00 BST 2025 Date UTC: Thu Jun 5 14:37:00 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Jun 5 02:37:00 -12 2025 I: pbuilder-time-stamp: 1749134220 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [librg-blast-parser-perl_0.03-9.dsc] I: copying [./librg-blast-parser-perl_0.03.orig.tar.gz] I: copying [./librg-blast-parser-perl_0.03-9.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./librg-blast-parser-perl_0.03-9.dsc: no acceptable signature found dpkg-source: info: extracting librg-blast-parser-perl in librg-blast-parser-perl-0.03 dpkg-source: info: unpacking librg-blast-parser-perl_0.03.orig.tar.gz dpkg-source: info: unpacking librg-blast-parser-perl_0.03-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_clash_YYEMPTY.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3952447/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='95b1f9b5a5744225aabbbd9e0ba21067' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3952447' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB/pbuilderrc_vFNH --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB/b1 --logfile b1/build.log librg-blast-parser-perl_0.03-9.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3952447/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libextutils-xspp-perl, librostlab-blast0-dev (>= 1.0.1-12), librostlab3-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libextutils-xspp-perl; however: Package libextutils-xspp-perl is not installed. pbuilder-satisfydepends-dummy depends on librostlab-blast0-dev (>= 1.0.1-12); however: Package librostlab-blast0-dev is not installed. pbuilder-satisfydepends-dummy depends on librostlab3-dev; however: Package librostlab3-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libextutils-xspp-perl{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} librostlab-blast0-dev{a} librostlab-blast0v5{a} librostlab3-dev{a} librostlab3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 11.3 MB of archives. After unpacking 48.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2 [241 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41-5 [93.8 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-1 [629 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-2 [1611 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libextutils-xspp-perl all 0.1800-3 [146 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 librostlab-blast0v5 arm64 1.0.1-14+b1 [73.9 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 librostlab3t64 arm64 1.0.20-14 [5344 B] Get: 33 http://deb.debian.org/debian unstable/main arm64 librostlab3-dev arm64 1.0.20-14 [12.6 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 librostlab-blast0-dev arm64 1.0.1-14+b1 [90.1 kB] Fetched 11.3 MB in 0s (46.0 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2_arm64.deb ... Unpacking gettext-base (0.23.1-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41-5_arm64.deb ... Unpacking bsdextrautils (2.41-5) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-8_arm64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../23-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2_arm64.deb ... Unpacking gettext (0.23.1-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package libextutils-xspp-perl. Preparing to unpack .../29-libextutils-xspp-perl_0.1800-3_all.deb ... Unpacking libextutils-xspp-perl (0.1800-3) ... Selecting previously unselected package librostlab-blast0v5:arm64. Preparing to unpack .../30-librostlab-blast0v5_1.0.1-14+b1_arm64.deb ... Unpacking librostlab-blast0v5:arm64 (1.0.1-14+b1) ... Selecting previously unselected package librostlab3t64:arm64. Preparing to unpack .../31-librostlab3t64_1.0.20-14_arm64.deb ... Unpacking librostlab3t64:arm64 (1.0.20-14) ... Selecting previously unselected package librostlab3-dev. Preparing to unpack .../32-librostlab3-dev_1.0.20-14_arm64.deb ... Unpacking librostlab3-dev (1.0.20-14) ... Selecting previously unselected package librostlab-blast0-dev. Preparing to unpack .../33-librostlab-blast0-dev_1.0.1-14+b1_arm64.deb ... Unpacking librostlab-blast0-dev (1.0.1-14+b1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41-5) ... Setting up libextutils-xspp-perl (0.1800-3) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up librostlab3t64:arm64 (1.0.20-14) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up librostlab3-dev (1.0.20-14) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up librostlab-blast0v5:arm64 (1.0.1-14+b1) ... Setting up librostlab-blast0-dev (1.0.1-14+b1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-8) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/librg-blast-parser-perl-0.03/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../librg-blast-parser-perl_0.03-9_source.changes dpkg-buildpackage: info: source package librg-blast-parser-perl dpkg-buildpackage: info: source version 0.03-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/librg-blast-parser-perl-0.03' dh_auto_configure -- LD="'aarch64-linux-gnu-gcc' -Wl,-z,relro -Wl,-z,now" OPTIMIZE="-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librg-blast-parser-perl-0.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++03" /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librg-blast-parser-perl-0.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librg-blast-parser-perl-0.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now" "LD='aarch64-linux-gnu-gcc' -Wl,-z,relro -Wl,-z,now" "OPTIMIZE=-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librg-blast-parser-perl-0.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++03" Checking if your kit is complete... Warning: the following files are missing in your kit: Parser.bs Parser.c Parser.o t/RG-Blast-Parser.t Please inform the author. Generating a Unix-style Makefile Writing Makefile for RG::Blast::Parser Writing MYMETA.yml and MYMETA.json make[1]: Leaving directory '/build/reproducible-path/librg-blast-parser-perl-0.03' dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/librg-blast-parser-perl-0.03' Running Mkbootstrap for Parser () cp lib/RG/Blast/Parser.pm blib/lib/RG/Blast/Parser.pm AutoSplitting blib/lib/RG/Blast/Parser.pm (blib/lib/auto/RG/Blast/Parser) "/usr/bin/perl" "/usr/share/perl/5.40/ExtUtils/xsubpp" -C++ -hiertype -noprototypes -typemap '/usr/share/perl/5.40/ExtUtils/typemap' -typemap '/build/reproducible-path/librg-blast-parser-perl-0.03/perlobject.map' -typemap '/build/reproducible-path/librg-blast-parser-perl-0.03/typemap' Parser.xs > Parser.xsc chmod 644 "Parser.bs" "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- Parser.bs blib/arch/auto/RG/Blast/Parser/Parser.bs 644 mv Parser.xsc Parser.c g++ -c -I. -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librg-blast-parser-perl-0.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++03 -DVERSION=\"0.03\" -DXS_VERSION=\"0.03\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" Parser.c cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ /usr/bin/perl -MExtUtils::XSpp::Cmd -e xspp -- --typemap=typemap.xsp Parser.xsp: In function 'void XS_RG__Blast__Parser_parse(PerlInterpreter*, CV*)': /usr/bin/perl -MExtUtils::XSpp::Cmd -e xspp -- --typemap=typemap.xsp Parser.xsp:51:57: warning: too many arguments for format [-Wformat-extra-args] rm -f blib/arch/auto/RG/Blast/Parser/Parser.so 'aarch64-linux-gnu-gcc' -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong Parser.o -o blib/arch/auto/RG/Blast/Parser/Parser.so \ -lrostlab-blast \ chmod 755 blib/arch/auto/RG/Blast/Parser/Parser.so Manifying 1 pod document make[1]: Leaving directory '/build/reproducible-path/librg-blast-parser-perl-0.03' dh_auto_test make -j12 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/librg-blast-parser-perl-0.03' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- Parser.bs blib/arch/auto/RG/Blast/Parser/Parser.bs 644 PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/01RG-Blast-Parserload.t .. 1..1 ok 1 - use RG::Blast::Parser; ok examples/badformat.ali:46.1-7: invalid character 'Q' examples/badformat.ali:46.1-8: invalid character 'u' examples/badformat.ali:46.1-9: invalid character 'e' examples/badformat.ali:46.1-10: invalid character 'r' examples/badformat.ali:46.1-11: invalid character 'y' examples/badformat.ali:46.1-12: invalid character ':' examples/badformat.ali:46.14: syntax error, unexpected INT t/02test.t ................. 1..23 ok 1 - use RG::Blast::Parser; ok 2 - An object of class 'RG::Blast::Parser' isa 'RG::Blast::Parser' ok 3 - RG::Blast::Parser->can(...) ok 4 ok 5 ok 6 ok 7 - An object of class 'RG::Blast::Parser' isa 'RG::Blast::Parser' ok 8 - RG::Blast::Parser->can(...) ok 9 ok 10 ok 11 ok 12 - An object of class 'RG::Blast::Parser' isa 'RG::Blast::Parser' ok 13 - RG::Blast::Parser->can(...) ok 14 ok 15 ok 16 - An object of class 'RG::Blast::Parser' isa 'RG::Blast::Parser' ok 17 - RG::Blast::Parser->can(...) ok 18 ok 19 ok 20 - An object of class 'RG::Blast::Parser' isa 'RG::Blast::Parser' ok 21 - RG::Blast::Parser->can(...) ok 22 ok 23 ok All tests successful. Files=2, Tests=24, 0 wallclock secs ( 0.02 usr 0.00 sys + 0.08 cusr 0.03 csys = 0.13 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/librg-blast-parser-perl-0.03' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/librg-blast-parser-perl/ make -j12 install DESTDIR=/build/reproducible-path/librg-blast-parser-perl-0.03/debian/librg-blast-parser-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/librg-blast-parser-perl-0.03' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- Parser.bs blib/arch/auto/RG/Blast/Parser/Parser.bs 644 Manifying 1 pod document Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /build/reproducible-path/librg-blast-parser-perl-0.03/debian/librg-blast-parser-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/auto/RG/Blast/Parser/Parser.so Installing /build/reproducible-path/librg-blast-parser-perl-0.03/debian/librg-blast-parser-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/auto/RG/Blast/Parser/autosplit.ix Installing /build/reproducible-path/librg-blast-parser-perl-0.03/debian/librg-blast-parser-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/RG/Blast/Parser.pm Installing /build/reproducible-path/librg-blast-parser-perl-0.03/debian/librg-blast-parser-perl/usr/share/man/man3/RG::Blast::Parser.3pm make[1]: Leaving directory '/build/reproducible-path/librg-blast-parser-perl-0.03' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'librg-blast-parser-perl' in '../librg-blast-parser-perl_0.03-9_arm64.deb'. dpkg-deb: building package 'librg-blast-parser-perl-dbgsym' in '../librg-blast-parser-perl-dbgsym_0.03-9_arm64.deb'. dpkg-genbuildinfo --build=binary -O../librg-blast-parser-perl_0.03-9_arm64.buildinfo dpkg-genchanges --build=binary -O../librg-blast-parser-perl_0.03-9_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3952447 and its subdirectories I: Current time: Thu Jun 5 02:37:53 -12 2025 I: pbuilder-time-stamp: 1749134273 Thu Jun 5 14:37:53 UTC 2025 I: Signing ./b1/librg-blast-parser-perl_0.03-9_arm64.buildinfo as librg-blast-parser-perl_0.03-9_arm64.buildinfo.asc Thu Jun 5 14:37:53 UTC 2025 I: Signed ./b1/librg-blast-parser-perl_0.03-9_arm64.buildinfo as ./b1/librg-blast-parser-perl_0.03-9_arm64.buildinfo.asc Thu Jun 5 14:37:53 UTC 2025 - build #1 for librg-blast-parser-perl/unstable/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Thu Jun 5 14:37:53 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-AZqGwzmU, removing. /srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Jun 5 14:37 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jun 5 14:36 b2 -rw-r--r-- 1 jenkins jenkins 2361 Sep 30 2022 librg-blast-parser-perl_0.03-9.dsc -rw------- 1 jenkins jenkins 3580 Jun 5 14:36 rbuildlog.D7eDOKu /srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB/b1: total 280 -rw-r--r-- 1 jenkins jenkins 26725 Jun 5 14:37 build.log -rw-r--r-- 1 jenkins jenkins 187764 Jun 5 14:37 librg-blast-parser-perl-dbgsym_0.03-9_arm64.deb -rw-r--r-- 1 jenkins jenkins 6132 Jun 5 14:37 librg-blast-parser-perl_0.03-9.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2361 Jun 5 14:37 librg-blast-parser-perl_0.03-9.dsc -rw-r--r-- 1 jenkins jenkins 5161 Jun 5 14:37 librg-blast-parser-perl_0.03-9_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 6043 Jun 5 14:37 librg-blast-parser-perl_0.03-9_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1635 Jun 5 14:37 librg-blast-parser-perl_0.03-9_arm64.changes -rw-r--r-- 1 jenkins jenkins 31868 Jun 5 14:37 librg-blast-parser-perl_0.03-9_arm64.deb -rw-r--r-- 1 jenkins jenkins 1449 Jun 5 14:37 librg-blast-parser-perl_0.03-9_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB/b2: total 0 Thu Jun 5 14:37:54 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jun 5 02:37:00 -12 2025 I: pbuilder-time-stamp: 1749134220 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [librg-blast-parser-perl_0.03-9.dsc] I: copying [./librg-blast-parser-perl_0.03.orig.tar.gz] I: copying [./librg-blast-parser-perl_0.03-9.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./librg-blast-parser-perl_0.03-9.dsc: no acceptable signature found dpkg-source: info: extracting librg-blast-parser-perl in librg-blast-parser-perl-0.03 dpkg-source: info: unpacking librg-blast-parser-perl_0.03.orig.tar.gz dpkg-source: info: unpacking librg-blast-parser-perl_0.03-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_clash_YYEMPTY.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3952447/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='95b1f9b5a5744225aabbbd9e0ba21067' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3952447' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB/pbuilderrc_vFNH --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB/b1 --logfile b1/build.log librg-blast-parser-perl_0.03-9.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3952447/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libextutils-xspp-perl, librostlab-blast0-dev (>= 1.0.1-12), librostlab3-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libextutils-xspp-perl; however: Package libextutils-xspp-perl is not installed. pbuilder-satisfydepends-dummy depends on librostlab-blast0-dev (>= 1.0.1-12); however: Package librostlab-blast0-dev is not installed. pbuilder-satisfydepends-dummy depends on librostlab3-dev; however: Package librostlab3-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libextutils-xspp-perl{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} librostlab-blast0-dev{a} librostlab-blast0v5{a} librostlab3-dev{a} librostlab3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 11.3 MB of archives. After unpacking 48.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2 [241 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41-5 [93.8 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-1 [629 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-2 [1611 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libextutils-xspp-perl all 0.1800-3 [146 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 librostlab-blast0v5 arm64 1.0.1-14+b1 [73.9 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 librostlab3t64 arm64 1.0.20-14 [5344 B] Get: 33 http://deb.debian.org/debian unstable/main arm64 librostlab3-dev arm64 1.0.20-14 [12.6 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 librostlab-blast0-dev arm64 1.0.1-14+b1 [90.1 kB] Fetched 11.3 MB in 0s (46.0 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2_arm64.deb ... Unpacking gettext-base (0.23.1-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41-5_arm64.deb ... Unpacking bsdextrautils (2.41-5) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-8_arm64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../23-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2_arm64.deb ... Unpacking gettext (0.23.1-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package libextutils-xspp-perl. Preparing to unpack .../29-libextutils-xspp-perl_0.1800-3_all.deb ... Unpacking libextutils-xspp-perl (0.1800-3) ... Selecting previously unselected package librostlab-blast0v5:arm64. Preparing to unpack .../30-librostlab-blast0v5_1.0.1-14+b1_arm64.deb ... Unpacking librostlab-blast0v5:arm64 (1.0.1-14+b1) ... Selecting previously unselected package librostlab3t64:arm64. Preparing to unpack .../31-librostlab3t64_1.0.20-14_arm64.deb ... Unpacking librostlab3t64:arm64 (1.0.20-14) ... Selecting previously unselected package librostlab3-dev. Preparing to unpack .../32-librostlab3-dev_1.0.20-14_arm64.deb ... Unpacking librostlab3-dev (1.0.20-14) ... Selecting previously unselected package librostlab-blast0-dev. Preparing to unpack .../33-librostlab-blast0-dev_1.0.1-14+b1_arm64.deb ... Unpacking librostlab-blast0-dev (1.0.1-14+b1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41-5) ... Setting up libextutils-xspp-perl (0.1800-3) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up librostlab3t64:arm64 (1.0.20-14) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up librostlab3-dev (1.0.20-14) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up librostlab-blast0v5:arm64 (1.0.1-14+b1) ... Setting up librostlab-blast0-dev (1.0.1-14+b1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-8) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/librg-blast-parser-perl-0.03/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../librg-blast-parser-perl_0.03-9_source.changes dpkg-buildpackage: info: source package librg-blast-parser-perl dpkg-buildpackage: info: source version 0.03-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/librg-blast-parser-perl-0.03' dh_auto_configure -- LD="'aarch64-linux-gnu-gcc' -Wl,-z,relro -Wl,-z,now" OPTIMIZE="-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librg-blast-parser-perl-0.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++03" /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librg-blast-parser-perl-0.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librg-blast-parser-perl-0.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now" "LD='aarch64-linux-gnu-gcc' -Wl,-z,relro -Wl,-z,now" "OPTIMIZE=-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librg-blast-parser-perl-0.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++03" Checking if your kit is complete... Warning: the following files are missing in your kit: Parser.bs Parser.c Parser.o t/RG-Blast-Parser.t Please inform the author. Generating a Unix-style Makefile Writing Makefile for RG::Blast::Parser Writing MYMETA.yml and MYMETA.json make[1]: Leaving directory '/build/reproducible-path/librg-blast-parser-perl-0.03' dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/librg-blast-parser-perl-0.03' Running Mkbootstrap for Parser () cp lib/RG/Blast/Parser.pm blib/lib/RG/Blast/Parser.pm AutoSplitting blib/lib/RG/Blast/Parser.pm (blib/lib/auto/RG/Blast/Parser) "/usr/bin/perl" "/usr/share/perl/5.40/ExtUtils/xsubpp" -C++ -hiertype -noprototypes -typemap '/usr/share/perl/5.40/ExtUtils/typemap' -typemap '/build/reproducible-path/librg-blast-parser-perl-0.03/perlobject.map' -typemap '/build/reproducible-path/librg-blast-parser-perl-0.03/typemap' Parser.xs > Parser.xsc chmod 644 "Parser.bs" "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- Parser.bs blib/arch/auto/RG/Blast/Parser/Parser.bs 644 mv Parser.xsc Parser.c g++ -c -I. -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librg-blast-parser-perl-0.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++03 -DVERSION=\"0.03\" -DXS_VERSION=\"0.03\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" Parser.c cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ /usr/bin/perl -MExtUtils::XSpp::Cmd -e xspp -- --typemap=typemap.xsp Parser.xsp: In function 'void XS_RG__Blast__Parser_parse(PerlInterpreter*, CV*)': /usr/bin/perl -MExtUtils::XSpp::Cmd -e xspp -- --typemap=typemap.xsp Parser.xsp:51:57: warning: too many arguments for format [-Wformat-extra-args] rm -f blib/arch/auto/RG/Blast/Parser/Parser.so 'aarch64-linux-gnu-gcc' -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong Parser.o -o blib/arch/auto/RG/Blast/Parser/Parser.so \ -lrostlab-blast \ chmod 755 blib/arch/auto/RG/Blast/Parser/Parser.so Manifying 1 pod document make[1]: Leaving directory '/build/reproducible-path/librg-blast-parser-perl-0.03' dh_auto_test make -j12 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/librg-blast-parser-perl-0.03' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- Parser.bs blib/arch/auto/RG/Blast/Parser/Parser.bs 644 PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/01RG-Blast-Parserload.t .. 1..1 ok 1 - use RG::Blast::Parser; ok examples/badformat.ali:46.1-7: invalid character 'Q' examples/badformat.ali:46.1-8: invalid character 'u' examples/badformat.ali:46.1-9: invalid character 'e' examples/badformat.ali:46.1-10: invalid character 'r' examples/badformat.ali:46.1-11: invalid character 'y' examples/badformat.ali:46.1-12: invalid character ':' examples/badformat.ali:46.14: syntax error, unexpected INT t/02test.t ................. 1..23 ok 1 - use RG::Blast::Parser; ok 2 - An object of class 'RG::Blast::Parser' isa 'RG::Blast::Parser' ok 3 - RG::Blast::Parser->can(...) ok 4 ok 5 ok 6 ok 7 - An object of class 'RG::Blast::Parser' isa 'RG::Blast::Parser' ok 8 - RG::Blast::Parser->can(...) ok 9 ok 10 ok 11 ok 12 - An object of class 'RG::Blast::Parser' isa 'RG::Blast::Parser' ok 13 - RG::Blast::Parser->can(...) ok 14 ok 15 ok 16 - An object of class 'RG::Blast::Parser' isa 'RG::Blast::Parser' ok 17 - RG::Blast::Parser->can(...) ok 18 ok 19 ok 20 - An object of class 'RG::Blast::Parser' isa 'RG::Blast::Parser' ok 21 - RG::Blast::Parser->can(...) ok 22 ok 23 ok All tests successful. Files=2, Tests=24, 0 wallclock secs ( 0.02 usr 0.00 sys + 0.08 cusr 0.03 csys = 0.13 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/librg-blast-parser-perl-0.03' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/librg-blast-parser-perl/ make -j12 install DESTDIR=/build/reproducible-path/librg-blast-parser-perl-0.03/debian/librg-blast-parser-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/librg-blast-parser-perl-0.03' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- Parser.bs blib/arch/auto/RG/Blast/Parser/Parser.bs 644 Manifying 1 pod document Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /build/reproducible-path/librg-blast-parser-perl-0.03/debian/librg-blast-parser-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/auto/RG/Blast/Parser/Parser.so Installing /build/reproducible-path/librg-blast-parser-perl-0.03/debian/librg-blast-parser-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/auto/RG/Blast/Parser/autosplit.ix Installing /build/reproducible-path/librg-blast-parser-perl-0.03/debian/librg-blast-parser-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/RG/Blast/Parser.pm Installing /build/reproducible-path/librg-blast-parser-perl-0.03/debian/librg-blast-parser-perl/usr/share/man/man3/RG::Blast::Parser.3pm make[1]: Leaving directory '/build/reproducible-path/librg-blast-parser-perl-0.03' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'librg-blast-parser-perl' in '../librg-blast-parser-perl_0.03-9_arm64.deb'. dpkg-deb: building package 'librg-blast-parser-perl-dbgsym' in '../librg-blast-parser-perl-dbgsym_0.03-9_arm64.deb'. dpkg-genbuildinfo --build=binary -O../librg-blast-parser-perl_0.03-9_arm64.buildinfo dpkg-genchanges --build=binary -O../librg-blast-parser-perl_0.03-9_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3952447 and its subdirectories I: Current time: Thu Jun 5 02:37:53 -12 2025 I: pbuilder-time-stamp: 1749134273 Thu Jun 5 14:37:55 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Thu Jun 5 14:37:55 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Thu Jun 5 14:37:55 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Thu Jun 5 14:37:55 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-OpsiMj' ==================================================================================== Wed Jul 8 21:00:56 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "2 librg-blast-parser-perl unstable /srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB 0.03-9" as arguments. Wed Jul 8 21:00:56 UTC 2026 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-qTiznMiM" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Jul 8 21:00:56 UTC 2026 I: Downloading source for unstable/librg-blast-parser-perl=0.03-9 Reading package lists... NOTICE: 'librg-blast-parser-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/librg-blast-parser-perl.git Please use: git clone https://salsa.debian.org/med-team/librg-blast-parser-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 20.1 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main librg-blast-parser-perl 0.03-9 (dsc) [2361 B] Get:2 http://deb.debian.org/debian unstable/main librg-blast-parser-perl 0.03-9 (tar) [11.6 kB] Get:3 http://deb.debian.org/debian unstable/main librg-blast-parser-perl 0.03-9 (diff) [6132 B] Fetched 20.1 kB in 0s (1301 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'librg-blast-parser-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/librg-blast-parser-perl.git Please use: git clone https://salsa.debian.org/med-team/librg-blast-parser-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 20.1 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main librg-blast-parser-perl 0.03-9 (dsc) [2361 B] Get:2 http://deb.debian.org/debian unstable/main librg-blast-parser-perl 0.03-9 (tar) [11.6 kB] Get:3 http://deb.debian.org/debian unstable/main librg-blast-parser-perl 0.03-9 (diff) [6132 B] Fetched 20.1 kB in 0s (1301 kB/s) Download complete and in download only mode ============================================================================= Re-Building librg-blast-parser-perl in unstable on arm64 on codethink03-arm64 now. Date: Wed Jul 8 22:00:56 BST 2026 Date UTC: Wed Jul 8 21:00:56 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB/pbuilderrc_5Y4Y + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' librg-blast-parser-perl = debian-installer -o librg-blast-parser-perl = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' librg-blast-parser-perl = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB/pbuilderrc_5Y4Y --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB/b2 --logfile b2/build.log librg-blast-parser-perl_0.03-9.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Jul 9 11:00:57 +14 2026 I: pbuilder-time-stamp: 1783544457 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [librg-blast-parser-perl_0.03-9.dsc] I: copying [./librg-blast-parser-perl_0.03.orig.tar.gz] I: copying [./librg-blast-parser-perl_0.03-9.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./librg-blast-parser-perl_0.03-9.dsc: no acceptable signature found dpkg-source: info: extracting librg-blast-parser-perl in librg-blast-parser-perl-0.03 dpkg-source: info: unpacking librg-blast-parser-perl_0.03.orig.tar.gz dpkg-source: info: unpacking librg-blast-parser-perl_0.03-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_clash_YYEMPTY.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/25252/tmp/hooks/D01_modify_environment starting debug: Running on codethink03-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jul 8 21:01 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/25252/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/25252/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=486d8d67b94a44c6ad093ad36ff4cfce LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=25252 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB/pbuilderrc_5Y4Y --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB/b2 --logfile b2/build.log librg-blast-parser-perl_0.03-9.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/25252/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libextutils-xspp-perl, librostlab-blast0-dev (>= 1.0.1-12), librostlab3-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libextutils-xspp-perl; however: Package libextutils-xspp-perl is not installed. pbuilder-satisfydepends-dummy depends on librostlab-blast0-dev (>= 1.0.1-12); however: Package librostlab-blast0-dev is not installed. pbuilder-satisfydepends-dummy depends on librostlab3-dev; however: Package librostlab3-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libextutils-xspp-perl{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} librostlab-blast0-dev{a} librostlab-blast0v5{a} librostlab3-dev{a} librostlab3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 11.3 MB of archives. After unpacking 48.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2 [241 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41-5 [93.8 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-1 [629 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-2 [1611 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libextutils-xspp-perl all 0.1800-3 [146 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 librostlab-blast0v5 arm64 1.0.1-14+b1 [73.9 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 librostlab3t64 arm64 1.0.20-14 [5344 B] Get: 33 http://deb.debian.org/debian unstable/main arm64 librostlab3-dev arm64 1.0.20-14 [12.6 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 librostlab-blast0-dev arm64 1.0.1-14+b1 [90.1 kB] Fetched 11.3 MB in 0s (108 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2_arm64.deb ... Unpacking gettext-base (0.23.1-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41-5_arm64.deb ... Unpacking bsdextrautils (2.41-5) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-8_arm64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../23-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2_arm64.deb ... Unpacking gettext (0.23.1-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package libextutils-xspp-perl. Preparing to unpack .../29-libextutils-xspp-perl_0.1800-3_all.deb ... Unpacking libextutils-xspp-perl (0.1800-3) ... Selecting previously unselected package librostlab-blast0v5:arm64. Preparing to unpack .../30-librostlab-blast0v5_1.0.1-14+b1_arm64.deb ... Unpacking librostlab-blast0v5:arm64 (1.0.1-14+b1) ... Selecting previously unselected package librostlab3t64:arm64. Preparing to unpack .../31-librostlab3t64_1.0.20-14_arm64.deb ... Unpacking librostlab3t64:arm64 (1.0.20-14) ... Selecting previously unselected package librostlab3-dev. Preparing to unpack .../32-librostlab3-dev_1.0.20-14_arm64.deb ... Unpacking librostlab3-dev (1.0.20-14) ... Selecting previously unselected package librostlab-blast0-dev. Preparing to unpack .../33-librostlab-blast0-dev_1.0.1-14+b1_arm64.deb ... Unpacking librostlab-blast0-dev (1.0.1-14+b1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41-5) ... Setting up libextutils-xspp-perl (0.1800-3) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up librostlab3t64:arm64 (1.0.20-14) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up librostlab3-dev (1.0.20-14) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up librostlab-blast0v5:arm64 (1.0.1-14+b1) ... Setting up librostlab-blast0-dev (1.0.1-14+b1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-8) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/25252/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/25252/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/librg-blast-parser-perl-0.03/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../librg-blast-parser-perl_0.03-9_source.changes dpkg-buildpackage: info: source package librg-blast-parser-perl dpkg-buildpackage: info: source version 0.03-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/librg-blast-parser-perl-0.03' dh_auto_configure -- LD="'aarch64-linux-gnu-gcc' -Wl,-z,relro -Wl,-z,now" OPTIMIZE="-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librg-blast-parser-perl-0.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++03" /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librg-blast-parser-perl-0.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librg-blast-parser-perl-0.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now" "LD='aarch64-linux-gnu-gcc' -Wl,-z,relro -Wl,-z,now" "OPTIMIZE=-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librg-blast-parser-perl-0.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++03" Checking if your kit is complete... Warning: the following files are missing in your kit: Parser.bs Parser.c Parser.o t/RG-Blast-Parser.t Please inform the author. Generating a Unix-style Makefile Writing Makefile for RG::Blast::Parser Writing MYMETA.yml and MYMETA.json make[1]: Leaving directory '/build/reproducible-path/librg-blast-parser-perl-0.03' dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/librg-blast-parser-perl-0.03' Running Mkbootstrap for Parser () "/usr/bin/perl" "/usr/share/perl/5.40/ExtUtils/xsubpp" -C++ -hiertype -noprototypes -typemap '/usr/share/perl/5.40/ExtUtils/typemap' -typemap '/build/reproducible-path/librg-blast-parser-perl-0.03/perlobject.map' -typemap '/build/reproducible-path/librg-blast-parser-perl-0.03/typemap' Parser.xs > Parser.xsc chmod 644 "Parser.bs" "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- Parser.bs blib/arch/auto/RG/Blast/Parser/Parser.bs 644 cp lib/RG/Blast/Parser.pm blib/lib/RG/Blast/Parser.pm AutoSplitting blib/lib/RG/Blast/Parser.pm (blib/lib/auto/RG/Blast/Parser) mv Parser.xsc Parser.c g++ -c -I. -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librg-blast-parser-perl-0.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++03 -DVERSION=\"0.03\" -DXS_VERSION=\"0.03\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" Parser.c cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ /usr/bin/perl -MExtUtils::XSpp::Cmd -e xspp -- --typemap=typemap.xsp Parser.xsp: In function 'void XS_RG__Blast__Parser_parse(PerlInterpreter*, CV*)': /usr/bin/perl -MExtUtils::XSpp::Cmd -e xspp -- --typemap=typemap.xsp Parser.xsp:51:57: warning: too many arguments for format [-Wformat-extra-args] rm -f blib/arch/auto/RG/Blast/Parser/Parser.so 'aarch64-linux-gnu-gcc' -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong Parser.o -o blib/arch/auto/RG/Blast/Parser/Parser.so \ -lrostlab-blast \ chmod 755 blib/arch/auto/RG/Blast/Parser/Parser.so Manifying 1 pod document make[1]: Leaving directory '/build/reproducible-path/librg-blast-parser-perl-0.03' dh_auto_test make -j12 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/librg-blast-parser-perl-0.03' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- Parser.bs blib/arch/auto/RG/Blast/Parser/Parser.bs 644 PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/01RG-Blast-Parserload.t .. 1..1 ok 1 - use RG::Blast::Parser; ok examples/badformat.ali:46.1-7: invalid character 'Q' examples/badformat.ali:46.1-8: invalid character 'u' examples/badformat.ali:46.1-9: invalid character 'e' examples/badformat.ali:46.1-10: invalid character 'r' examples/badformat.ali:46.1-11: invalid character 'y' examples/badformat.ali:46.1-12: invalid character ':' examples/badformat.ali:46.14: syntax error, unexpected INT t/02test.t ................. 1..23 ok 1 - use RG::Blast::Parser; ok 2 - An object of class 'RG::Blast::Parser' isa 'RG::Blast::Parser' ok 3 - RG::Blast::Parser->can(...) ok 4 ok 5 ok 6 ok 7 - An object of class 'RG::Blast::Parser' isa 'RG::Blast::Parser' ok 8 - RG::Blast::Parser->can(...) ok 9 ok 10 ok 11 ok 12 - An object of class 'RG::Blast::Parser' isa 'RG::Blast::Parser' ok 13 - RG::Blast::Parser->can(...) ok 14 ok 15 ok 16 - An object of class 'RG::Blast::Parser' isa 'RG::Blast::Parser' ok 17 - RG::Blast::Parser->can(...) ok 18 ok 19 ok 20 - An object of class 'RG::Blast::Parser' isa 'RG::Blast::Parser' ok 21 - RG::Blast::Parser->can(...) ok 22 ok 23 ok All tests successful. Files=2, Tests=24, 0 wallclock secs ( 0.03 usr 0.00 sys + 0.18 cusr 0.04 csys = 0.25 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/librg-blast-parser-perl-0.03' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/librg-blast-parser-perl/ make -j12 install DESTDIR=/build/reproducible-path/librg-blast-parser-perl-0.03/debian/librg-blast-parser-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/librg-blast-parser-perl-0.03' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- Parser.bs blib/arch/auto/RG/Blast/Parser/Parser.bs 644 Manifying 1 pod document Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /build/reproducible-path/librg-blast-parser-perl-0.03/debian/librg-blast-parser-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/auto/RG/Blast/Parser/Parser.so Installing /build/reproducible-path/librg-blast-parser-perl-0.03/debian/librg-blast-parser-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/auto/RG/Blast/Parser/autosplit.ix Installing /build/reproducible-path/librg-blast-parser-perl-0.03/debian/librg-blast-parser-perl/usr/lib/aarch64-linux-gnu/perl5/5.40/RG/Blast/Parser.pm Installing /build/reproducible-path/librg-blast-parser-perl-0.03/debian/librg-blast-parser-perl/usr/share/man/man3/RG::Blast::Parser.3pm make[1]: Leaving directory '/build/reproducible-path/librg-blast-parser-perl-0.03' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'librg-blast-parser-perl' in '../librg-blast-parser-perl_0.03-9_arm64.deb'. dpkg-deb: building package 'librg-blast-parser-perl-dbgsym' in '../librg-blast-parser-perl-dbgsym_0.03-9_arm64.deb'. dpkg-genbuildinfo --build=binary -O../librg-blast-parser-perl_0.03-9_arm64.buildinfo dpkg-genchanges --build=binary -O../librg-blast-parser-perl_0.03-9_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/25252/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/25252/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/25252 and its subdirectories I: Current time: Thu Jul 9 11:01:27 +14 2026 I: pbuilder-time-stamp: 1783544487 + false + set +x Wed Jul 8 21:01:27 UTC 2026 I: Signing ./b2/librg-blast-parser-perl_0.03-9_arm64.buildinfo as librg-blast-parser-perl_0.03-9_arm64.buildinfo.asc Wed Jul 8 21:01:27 UTC 2026 I: Signed ./b2/librg-blast-parser-perl_0.03-9_arm64.buildinfo as ./b2/librg-blast-parser-perl_0.03-9_arm64.buildinfo.asc Wed Jul 8 21:01:27 UTC 2026 - build #2 for librg-blast-parser-perl/unstable/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Wed Jul 8 21:01:27 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-qTiznMiM, removing. /srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB: total 44 drwxr-xr-x 2 jenkins jenkins 4096 Jun 5 14:37 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jun 5 14:38 b2 -rw-r--r-- 1 jenkins jenkins 2361 Sep 30 2022 librg-blast-parser-perl_0.03-9.dsc -rw------- 1 jenkins jenkins 30606 Jun 5 14:37 rbuildlog.D7eDOKu /srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB/b1: total 284 -rw-r--r-- 1 jenkins jenkins 26725 Jun 5 14:37 build.log -rw-r--r-- 1 jenkins jenkins 187764 Jun 5 14:37 librg-blast-parser-perl-dbgsym_0.03-9_arm64.deb -rw-r--r-- 1 jenkins jenkins 6132 Jun 5 14:37 librg-blast-parser-perl_0.03-9.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2361 Jun 5 14:37 librg-blast-parser-perl_0.03-9.dsc -rw-r--r-- 1 jenkins jenkins 5161 Jun 5 14:37 librg-blast-parser-perl_0.03-9_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 6043 Jun 5 14:37 librg-blast-parser-perl_0.03-9_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1635 Jun 5 14:37 librg-blast-parser-perl_0.03-9_arm64.changes -rw-r--r-- 1 jenkins jenkins 31868 Jun 5 14:37 librg-blast-parser-perl_0.03-9_arm64.deb -rw-r--r-- 1 jenkins jenkins 1449 Jun 5 14:37 librg-blast-parser-perl_0.03-9_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB/b2: total 280 -rw-r--r-- 1 jenkins jenkins 28649 Jun 5 14:38 build.log -rw-r--r-- 1 jenkins jenkins 187764 Jun 5 14:38 librg-blast-parser-perl-dbgsym_0.03-9_arm64.deb -rw-r--r-- 1 jenkins jenkins 6132 Jun 5 14:38 librg-blast-parser-perl_0.03-9.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2361 Jun 5 14:38 librg-blast-parser-perl_0.03-9.dsc -rw-r--r-- 1 jenkins jenkins 5161 Jun 5 14:38 librg-blast-parser-perl_0.03-9_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 6043 Jun 5 14:38 librg-blast-parser-perl_0.03-9_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1635 Jun 5 14:38 librg-blast-parser-perl_0.03-9_arm64.changes -rw-r--r-- 1 jenkins jenkins 31868 Jun 5 14:38 librg-blast-parser-perl_0.03-9_arm64.deb -rw-r--r-- 1 jenkins jenkins 1449 Jun 5 14:38 librg-blast-parser-perl_0.03-9_source.changes Thu Jun 5 14:38:28 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Thu Jun 5 14:38:29 UTC 2025 I: librg-blast-parser-perl_0.03-9_arm64.changes: Format: 1.8 Date: Fri, 30 Sep 2022 12:04:56 +0200 Source: librg-blast-parser-perl Binary: librg-blast-parser-perl librg-blast-parser-perl-dbgsym Architecture: arm64 Version: 0.03-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: librg-blast-parser-perl - very fast NCBI BLAST parser - binding for Perl Closes: 1012988 Changes: librg-blast-parser-perl (0.03-9) unstable; urgency=medium . * Team upload. * Rebuild against librostlab-blast 1.0.1-13. (Closes: #1012988) * Standards-Version: 4.6.1 (routine-update) Checksums-Sha1: 0c117e66643f2c4eafae11d289e695250978ff0f 187764 librg-blast-parser-perl-dbgsym_0.03-9_arm64.deb ed745975ca01cc1f0ebe89d18c68446fbccad1f1 5161 librg-blast-parser-perl_0.03-9_arm64.buildinfo 2090b644ce21403fb7736325a78b71c7b6bcabf6 31868 librg-blast-parser-perl_0.03-9_arm64.deb Checksums-Sha256: 746e4978107bb1ae1a603d535e849e2fb09b369f211c210239bc537e42cb369c 187764 librg-blast-parser-perl-dbgsym_0.03-9_arm64.deb 3bccbbfac627dcaa4ed01a7f176cfbd9eb05e0c30485da2fbf82e8d8b498d7a6 5161 librg-blast-parser-perl_0.03-9_arm64.buildinfo 2e7a31d4e0042c7701ea1bfc658c4e10ec27cf5d71abe1a7590a25b3fef00fc1 31868 librg-blast-parser-perl_0.03-9_arm64.deb Files: d6dc0e1a8561f450ff2ed8d43309db4b 187764 debug optional librg-blast-parser-perl-dbgsym_0.03-9_arm64.deb b22065c42436dbcc8bf88839245c7021 5161 perl optional librg-blast-parser-perl_0.03-9_arm64.buildinfo ea0ea988b85fed937d6ba4be89bfd2df 31868 perl optional librg-blast-parser-perl_0.03-9_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/librg-blast-parser-perl_0.03-9.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/librg-blast-parser-perl_0.03-9.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/librg-blast-parser-perl_0.03-9.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/librg-blast-parser-perl_0.03-9.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/arm64/librg-blast-parser-perl_0.03-9_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/librg-blast-parser-perl_0.03-9.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-06-05 14:37:54.173634035 +0000 +++ b2/build.log 2025-06-05 14:38:28.433856980 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Jun 5 02:37:00 -12 2025 -I: pbuilder-time-stamp: 1749134220 +I: Current time: Thu Jul 9 11:00:57 +14 2026 +I: pbuilder-time-stamp: 1783544457 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -24,52 +24,84 @@ dpkg-source: info: applying no_clash_YYEMPTY.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3952447/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/25252/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jul 8 21:01 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/25252/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/25252/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='95b1f9b5a5744225aabbbd9e0ba21067' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3952447' - PS1='# ' - PS2='> ' + INVOCATION_ID=486d8d67b94a44c6ad093ad36ff4cfce + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=25252 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB/pbuilderrc_vFNH --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB/b1 --logfile b1/build.log librg-blast-parser-perl_0.03-9.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB/pbuilderrc_5Y4Y --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB/b2 --logfile b2/build.log librg-blast-parser-perl_0.03-9.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3952447/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/25252/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -147,7 +179,7 @@ Get: 32 http://deb.debian.org/debian unstable/main arm64 librostlab3t64 arm64 1.0.20-14 [5344 B] Get: 33 http://deb.debian.org/debian unstable/main arm64 librostlab3-dev arm64 1.0.20-14 [12.6 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 librostlab-blast0-dev arm64 1.0.1-14+b1 [90.1 kB] -Fetched 11.3 MB in 0s (46.0 MB/s) +Fetched 11.3 MB in 0s (108 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) @@ -298,7 +330,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/librg-blast-parser-perl-0.03/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../librg-blast-parser-perl_0.03-9_source.changes +I: user script /srv/workspace/pbuilder/25252/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/25252/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/librg-blast-parser-perl-0.03/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../librg-blast-parser-perl_0.03-9_source.changes dpkg-buildpackage: info: source package librg-blast-parser-perl dpkg-buildpackage: info: source version 0.03-9 dpkg-buildpackage: info: source distribution unstable @@ -331,11 +367,11 @@ make -j12 make[1]: Entering directory '/build/reproducible-path/librg-blast-parser-perl-0.03' Running Mkbootstrap for Parser () -cp lib/RG/Blast/Parser.pm blib/lib/RG/Blast/Parser.pm -AutoSplitting blib/lib/RG/Blast/Parser.pm (blib/lib/auto/RG/Blast/Parser) "/usr/bin/perl" "/usr/share/perl/5.40/ExtUtils/xsubpp" -C++ -hiertype -noprototypes -typemap '/usr/share/perl/5.40/ExtUtils/typemap' -typemap '/build/reproducible-path/librg-blast-parser-perl-0.03/perlobject.map' -typemap '/build/reproducible-path/librg-blast-parser-perl-0.03/typemap' Parser.xs > Parser.xsc chmod 644 "Parser.bs" "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- Parser.bs blib/arch/auto/RG/Blast/Parser/Parser.bs 644 +cp lib/RG/Blast/Parser.pm blib/lib/RG/Blast/Parser.pm +AutoSplitting blib/lib/RG/Blast/Parser.pm (blib/lib/auto/RG/Blast/Parser) mv Parser.xsc Parser.c g++ -c -I. -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/librg-blast-parser-perl-0.03=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -std=c++03 -DVERSION=\"0.03\" -DXS_VERSION=\"0.03\" -fPIC "-I/usr/lib/aarch64-linux-gnu/perl/5.40/CORE" Parser.c cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ @@ -391,7 +427,7 @@ ok 23 ok All tests successful. -Files=2, Tests=24, 0 wallclock secs ( 0.02 usr 0.00 sys + 0.08 cusr 0.03 csys = 0.13 CPU) +Files=2, Tests=24, 0 wallclock secs ( 0.03 usr 0.00 sys + 0.18 cusr 0.04 csys = 0.25 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/librg-blast-parser-perl-0.03' create-stamp debian/debhelper-build-stamp @@ -438,12 +474,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/25252/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/25252/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3952447 and its subdirectories -I: Current time: Thu Jun 5 02:37:53 -12 2025 -I: pbuilder-time-stamp: 1749134273 +I: removing directory /srv/workspace/pbuilder/25252 and its subdirectories +I: Current time: Thu Jul 9 11:01:27 +14 2026 +I: pbuilder-time-stamp: 1783544487 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/librg-blast-parser-perl_0.03-9.diff: 66.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/librg-blast-parser-perl_0.03-9.diff.gz b2/build.log: 75.3% -- replaced with stdout Compressing the 1st log... b1/build.log: 76.0% -- replaced with stdout Thu Jun 5 14:38:29 UTC 2025 I: diffoscope 297 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_librg-blast-parser-perl_unstable_arm64_1749134309 + touch /var/log/reproducible-builds/diffoscope_stamp_librg-blast-parser-perl_unstable_arm64_1749134309 + RESULT=0 + systemd-run '--description=diffoscope on librg-blast-parser-perl/0.03-9 in unstable/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_9-78989 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB --run-session -c jenkins-reproducible-unstable-diffoscope-1d608976-90a9-4b87-834f-301c3a38b593 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB/dbd-tmp-ltwPiHc ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB/librg-blast-parser-perl_0.03-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB/librg-blast-parser-perl_0.03-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB/librg-blast-parser-perl_0.03-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB/b1/librg-blast-parser-perl_0.03-9_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB/b2/librg-blast-parser-perl_0.03-9_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_9-78989.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB/librg-blast-parser-perl_0.03-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB/librg-blast-parser-perl_0.03-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB/librg-blast-parser-perl_0.03-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB/b1/librg-blast-parser-perl_0.03-9_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.fBwCkOdB/b2/librg-blast-parser-perl_0.03-9_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 161ms CPU time consumed: 162ms _ _ _ _ _ _ | (_) |__ _ __ __ _ | |__ | | __ _ ___| |_ _ __ __ _ _ __ ___ | | | '_ \| '__/ _` |_____| '_ \| |/ _` / __| __|____| '_ \ / _` | '__/ __| | | | |_) | | | (_| |_____| |_) | | (_| \__ \ ||_____| |_) | (_| | | \__ \ |_|_|_.__/|_| \__, | |_.__/|_|\__,_|___/\__| | .__/ \__,_|_| |___/ |___/ |_| _ ___ _ __ _ __ ___ _ __| | / _ \ '__|____| '_ \ / _ \ '__| | | __/ | |_____| |_) | __/ | | | \___|_| | .__/ \___|_| |_| |_| Thu Jun 5 14:38:30 UTC 2025 I: diffoscope 297 found no differences in the changes files, and a .buildinfo file also exists. Thu Jun 5 14:38:30 UTC 2025 I: librg-blast-parser-perl from unstable built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-06-05 14:38:30] INFO: Starting at 2025-06-05 14:38:30.652721 [2025-06-05 14:38:30] INFO: Generating the pages of 1 package(s) [2025-06-05 14:38:30] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/arm64/librg-blast-parser-perl didn't produce a buildlog, even though it has been built. [2025-06-05 14:38:30] INFO: Finished at 2025-06-05 14:38:30.889620, took: 0:00:00.236901 Thu Jun 5 14:38:30 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/arm64/librg-blast-parser-perl.html Thu Jun 5 14:38:30 UTC 2025 I: Removing signed librg-blast-parser-perl_0.03-9_arm64.buildinfo.asc files: removed './b1/librg-blast-parser-perl_0.03-9_arm64.buildinfo.asc' removed './b2/librg-blast-parser-perl_0.03-9_arm64.buildinfo.asc' 1749134310 arm64 unstable librg-blast-parser-perl Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/librg-blast-parser-perl_0.03-9.rbuild.log: 73.1% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/librg-blast-parser-perl_0.03-9.rbuild.log.gz [2025-06-05 14:38:31] INFO: Starting at 2025-06-05 14:38:31.136040 [2025-06-05 14:38:31] INFO: Generating the pages of 1 package(s) [2025-06-05 14:38:31] INFO: Finished at 2025-06-05 14:38:31.359705, took: 0:00:00.223670 All cleanup done. Thu Jun 5 14:38:31 UTC 2025 - total duration: 0h 1m 52s. Thu Jun 5 14:38:31 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-F3jNMvUt, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1min 52.558s CPU time consumed: 4.383s