Running as unit: rb-build-armhf_11-6869.service ==================================================================================== Sun Nov 24 14:50:42 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_armhf_11) on jenkins, called using "wbq0-armhf-rb virt64b-armhf-rb" as arguments. Sun Nov 24 14:50:42 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-VFEed3H5" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Nov 24 14:50:42 UTC 2024 - checking /var/lib/jenkins/offline_nodes if wbq0-armhf-rb.debian.net is marked as down. Sun Nov 24 14:50:42 UTC 2024 - checking via ssh if wbq0-armhf-rb.debian.net is up. removed '/tmp/read-only-fs-test-Slb4Fh' Sun Nov 24 14:50:45 UTC 2024 - checking /var/lib/jenkins/offline_nodes if virt64b-armhf-rb.debian.net is marked as down. Sun Nov 24 14:50:45 UTC 2024 - checking via ssh if virt64b-armhf-rb.debian.net is up. removed '/tmp/read-only-fs-test-u5Mg4t' ok, let's check if pilercr is building anywhere yet… ok, pilercr is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of pilercr in trixie on armhf on jenkins now. 1st build will be done on wbq0-armhf-rb.debian.net. 2nd build will be done on virt64b-armhf-rb.debian.net. ============================================================================= Sun Nov 24 14:51:02 UTC 2024 I: starting to build pilercr/trixie/armhf on jenkins on '2024-11-24 14:50' Sun Nov 24 14:51:02 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_11/6869/console.log 1732459862 armhf trixie pilercr Sun Nov 24 14:51:02 UTC 2024 I: Downloading source for trixie/pilercr=1.06+dfsg-5 --2024-11-24 14:51:02-- http://deb.debian.org/debian/pool/main/p/pilercr/pilercr_1.06%2bdfsg-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1986 (1.9K) [text/prs.lines.tag] Saving to: ‘pilercr_1.06+dfsg-5.dsc’ 0K . 100% 300M=0s 2024-11-24 14:51:02 (300 MB/s) - ‘pilercr_1.06+dfsg-5.dsc’ saved [1986/1986] --2024-11-24 14:51:02-- http://deb.debian.org/debian/pool/main/p/pilercr/pilercr_1.06%2bdfsg-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1986 (1.9K) [text/prs.lines.tag] Saving to: ‘pilercr_1.06+dfsg-5.dsc’ 0K . 100% 300M=0s 2024-11-24 14:51:02 (300 MB/s) - ‘pilercr_1.06+dfsg-5.dsc’ saved [1986/1986] Sun Nov 24 14:51:02 UTC 2024 I: pilercr_1.06+dfsg-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pilercr Binary: pilercr Architecture: any Version: 1.06+dfsg-5 Maintainer: Debian Med Packaging Team Uploaders: Andrius Merkys Homepage: https://www.drive5.com/pilercr/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/pilercr Vcs-Git: https://salsa.debian.org/med-team/pilercr.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), help2man Package-List: pilercr deb science optional arch=any Checksums-Sha1: ec00e5c5e116ca933b7e23d19f8a2a630352a788 80128 pilercr_1.06+dfsg.orig.tar.xz b5cb10848f0ea4cf91289569d6f757af38ac2486 8600 pilercr_1.06+dfsg-5.debian.tar.xz Checksums-Sha256: 377d88b76960483a33e4f620bab180e5f994b43e550961ca3e3ea3b77d64ccc9 80128 pilercr_1.06+dfsg.orig.tar.xz 4bcc78676e4663ada0e8f799cbecbd3d02f7be36a1edca83c2e0299b61824f3f 8600 pilercr_1.06+dfsg-5.debian.tar.xz Files: ba866a26a14562fb2e3c425ad601ca08 80128 pilercr_1.06+dfsg.orig.tar.xz d7857b8b6aa4bdd1517a1d0500aa5367 8600 pilercr_1.06+dfsg-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmEaIaUUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafFluQ/+JH4FmdIhA5NEt6Cqt2P25LP5PTMP kcN+VtGUlmLGN1L1qIr6y9Hk1KfEgSyv6AY9Rq+z8Y9nWRroghkhXvsQr87W2z4H EdZHXQjkixwRbqshaRZ4jGv3N7ipchrhkvXxlqc026FGGsEHD5laEZ9qBvMbkWSK Js+xxQ6sYPq/KR3PK2cXVAfoM1lgNM+E14oweAdqa56BKlt8W+Mv7YAUgXwFoI/2 g0LBb/oOYtahutL3LtSffXXlC1UjZ+QWLcQ079W6km4ZaWDIcf82XryqBSYyswRf 0WshkSlvvV6VoSMZFWjNgTUdS0smDV+bprfhKOeayNXZZ4bIceMoYUr21o91PwZG rfbSPZMVFwQv4kw3DI3lej4FmjY0wkTuXupgN1rBGxH+vQ0dZfeyXN+gxC2Y/Ah6 1wJV8s8n/5VTXWpfb7N4vDy6CEpg6bFvppDuuxloZ3PQjGxinmqLIx5yv/UQ/9EN 1HWW09WkdhmTQ9EW61nRecNThuYVQFE4Mq4suH8c9fH0Oz6yZbstcyrKgSdvfaJL HZEWBnwgectke4f9VPRgOMJFF1STR1Wg4JPZ4joUJ5fmkA3QVI4P8mcFuSI1uhxZ 4u9Fq+ByIRK3oRj/aSFtmC2a/1f93Nq5BwuF548slFxuM7S11YRf/oJ1bCko58wi qf8qINh8TWZY0D0= =uLsb -----END PGP SIGNATURE----- Sun Nov 24 14:51:02 UTC 2024 I: Checking whether the package is not for us Sun Nov 24 14:51:02 UTC 2024 I: Starting 1st build on remote node wbq0-armhf-rb.debian.net. Sun Nov 24 14:51:02 UTC 2024 I: Preparing to do remote build '1' on wbq0-armhf-rb.debian.net. Sun Nov 24 14:51:02 UTC 2024 - checking /var/lib/jenkins/offline_nodes if wbq0-armhf-rb.debian.net is marked as down. Sun Nov 24 14:51:02 UTC 2024 - checking via ssh if wbq0-armhf-rb.debian.net is up. removed '/tmp/read-only-fs-test-U9hzsM' ==================================================================================== Sun Nov 24 14:51:08 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on wbq0, called using "1 pilercr trixie /srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb 1.06+dfsg-5" as arguments. Sun Nov 24 14:51:08 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-seD0VdCp" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Nov 24 14:51:08 UTC 2024 I: Downloading source for trixie/pilercr=1.06+dfsg-5 Reading package lists... NOTICE: 'pilercr' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/pilercr.git Please use: git clone https://salsa.debian.org/med-team/pilercr.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 90.7 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main pilercr 1.06+dfsg-5 (dsc) [1986 B] Get:2 http://deb.debian.org/debian trixie/main pilercr 1.06+dfsg-5 (tar) [80.1 kB] Get:3 http://deb.debian.org/debian trixie/main pilercr 1.06+dfsg-5 (diff) [8600 B] Fetched 90.7 kB in 1s (128 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'pilercr' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/pilercr.git Please use: git clone https://salsa.debian.org/med-team/pilercr.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 90.7 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main pilercr 1.06+dfsg-5 (dsc) [1986 B] Get:2 http://deb.debian.org/debian trixie/main pilercr 1.06+dfsg-5 (tar) [80.1 kB] Get:3 http://deb.debian.org/debian trixie/main pilercr 1.06+dfsg-5 (diff) [8600 B] Fetched 90.7 kB in 1s (128 kB/s) Download complete and in download only mode ============================================================================= Building pilercr in trixie on armhf on wbq0 now. Date: Sun Nov 24 06:51:11 PST 2024 Date UTC: Sun Nov 24 14:51:11 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log W: cgroups are not available on the host, not using them. I: pbuilder: network access will be disabled during build I: Current time: Sun Nov 24 02:51:12 -12 2024 I: pbuilder-time-stamp: 1732459872 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pilercr_1.06+dfsg-5.dsc] I: copying [./pilercr_1.06+dfsg.orig.tar.xz] I: copying [./pilercr_1.06+dfsg-5.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Aug 16 08:28:21 2021 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pilercr_1.06+dfsg-5.dsc: no acceptable signature found dpkg-source: info: extracting pilercr in pilercr-1.06+dfsg dpkg-source: info: unpacking pilercr_1.06+dfsg.orig.tar.xz dpkg-source: info: unpacking pilercr_1.06+dfsg-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_unix_builds.patch dpkg-source: info: applying no-static.patch dpkg-source: info: applying debugsymbols.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/31754/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='31754' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb/pbuilderrc_VCTd --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb/b1 --logfile b1/build.log pilercr_1.06+dfsg-5.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/sbin/chroot' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux wbq0 6.1.0-27-armmp #1 SMP Debian 6.1.115-1 (2024-11-01) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/31754/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19690 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 19.3 MB of archives. After unpacking 70.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf liblocale-gettext-perl armhf 1.07-7+b1 [14.7 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.22.5-2 [195 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-5 [1091 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.2-11 [83.6 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf autopoint all 0.22.5-2 [723 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.20 [89.7 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-8 [517 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 23 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-5+b1 [9088 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.22.5-2 [1485 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf debhelper all 13.20 [915 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf help2man armhf 1.49.3 [198 kB] Fetched 19.3 MB in 2s (11.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19690 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_armhf.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3+b1_armhf.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.22.5-2_armhf.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-5_armhf.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.40.2-11_armhf.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../09-libpipeline1_1.5.8-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.0-1_armhf.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../22-libelf1t64_0.192-4_armhf.deb ... Unpacking libelf1t64:armhf (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../24-libicu72_72.1-5+b1_armhf.deb ... Unpacking libicu72:armhf (72.1-5+b1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_armhf.deb ... Unpacking libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.22.5-2_armhf.deb ... Unpacking gettext (0.22.5-2) ... 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Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pilercr-1.06+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pilercr_1.06+dfsg-5_source.changes dpkg-buildpackage: info: source package pilercr dpkg-buildpackage: info: source version 1.06+dfsg-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/pilercr-1.06+dfsg' rm -f *.o pilercr pilercr.1 make[1]: Leaving directory '/build/reproducible-path/pilercr-1.06+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/pilercr-1.06+dfsg' dpkg-architecture -f -aarmhf -c dh_auto_build -- 'GPP=$(CXX)' make -j3 "INSTALL=install --strip-program=true" GPP=\$\(CXX\) make[2]: Entering directory '/build/reproducible-path/pilercr-1.06+dfsg' g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c acceptaa.cpp -o acceptaa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c accepthit.cpp -o accepthit.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c alignarrays.cpp -o alignarrays.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c alignclust.cpp -o alignclust.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c alignprofs.cpp -o alignprofs.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c aligntraps.cpp -o aligntraps.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c alnarray.cpp -o alnarray.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c alngivenpath.cpp -o alngivenpath.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c alpha.cpp -o alpha.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c assert.cpp -o assert.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c bittb.cpp -o bittb.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c clustcons.cpp -o clustcons.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c clustconsr.cpp -o clustconsr.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c cmp.cpp -o cmp.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c comp.cpp -o comp.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c cons.cpp -o cons.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c distcalc.cpp -o distcalc.o comp.cpp: In function 'void Complement(char*, int)': comp.cpp:31:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 31 | { register unsigned char *s, *t; | ^ comp.cpp:31:33: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 31 | { register unsigned char *s, *t; | ^ g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c distfunc.cpp -o distfunc.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c dp.cpp -o dp.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c estring.cpp -o estring.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c expandpiles.cpp -o expandpiles.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c filterb.cpp -o filterb.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c filterb2.cpp -o filterb2.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c findarrays.cpp -o findarrays.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c findpiles.cpp -o findpiles.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c fixbounds.cpp -o fixbounds.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c getarraydata.cpp -o getarraydata.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c getccs.cpp -o getccs.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c getconsaa.cpp -o getconsaa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c getgdtree.cpp -o getgdtree.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c getparams.cpp -o getparams.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c getsubseq.cpp -o getsubseq.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c glbalign.cpp -o glbalign.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c hitstoimages.cpp -o hitstoimages.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c info.cpp -o info.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c kmerdist.cpp -o kmerdist.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c log.cpp -o log.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c logaa.cpp -o logaa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c loghits.cpp -o loghits.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c main.cpp -o main.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c makecontigmap.cpp -o makecontigmap.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c makegraph.cpp -o makegraph.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c makeindex.cpp -o makeindex.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c mem.cpp -o mem.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c mergearrays.cpp -o mergearrays.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c mergefilterhits.cpp -o mergefilterhits.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c mkrootmsa.cpp -o mkrootmsa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c msa.cpp -o msa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c multaln.cpp -o multaln.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c options.cpp -o options.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c outarray.cpp -o outarray.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c outdetail.cpp -o outdetail.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c outdetailaa.cpp -o outdetailaa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c outlocalaln.cpp -o outlocalaln.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c params.cpp -o params.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c pilercr.cpp -o pilercr.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c proffrommsa.cpp -o proffrommsa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c progaln.cpp -o progaln.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c progress.cpp -o progress.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c pwpath.cpp -o pwpath.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c quit.cpp -o quit.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c readfilterhits.cpp -o readfilterhits.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c readmfa.cpp -o readmfa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c revcomp.cpp -o revcomp.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c savefhits.cpp -o savefhits.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c savefilterhit.cpp -o savefilterhit.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c saveseqs.cpp -o saveseqs.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c savetraps.cpp -o savetraps.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c scoremx.cpp -o scoremx.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c seq.cpp -o seq.o savetraps.cpp: In function 'void SaveTrap(FILE*, const Trapezoid&)': savetraps.cpp:14:76: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 14 | WriteGFFRecord(f, QueryFrom, QueryTo, TargetFrom, TargetTo, false, "trap", 0, 0); | ^~~~~~ g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c seqvect.cpp -o seqvect.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c swsimple.cpp -o swsimple.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c tbsw.cpp -o tbsw.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c tree.cpp -o tree.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c upgma.cpp -o upgma.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c usage.cpp -o usage.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c utils.cpp -o utils.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c utils_linux.cpp -o utils_linux.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c utils_other.cpp -o utils_other.o In file included from pilercr.h:38, from utils.cpp:1: utils.cpp: In function 'char* StdioStrMode(FILEIO_MODE)': types.h:113:41: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 113 | #define FILIO_STRMODE_ReadOnly "r" | ^~~ utils.cpp:62:24: note: in expansion of macro 'FILIO_STRMODE_ReadOnly' 62 | return FILIO_STRMODE_ReadOnly; | ^~~~~~~~~~~~~~~~~~~~~~ types.h:114:41: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 114 | #define FILIO_STRMODE_WriteOnly "w" | ^~~ utils.cpp:64:24: note: in expansion of macro 'FILIO_STRMODE_WriteOnly' 64 | return FILIO_STRMODE_WriteOnly; | ^~~~~~~~~~~~~~~~~~~~~~~ types.h:115:41: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 115 | #define FILIO_STRMODE_ReadWrite "w+" | ^~~~ utils.cpp:66:24: note: in expansion of macro 'FILIO_STRMODE_ReadWrite' 66 | return FILIO_STRMODE_ReadWrite; | ^~~~~~~~~~~~~~~~~~~~~~~ utils.cpp:69:16: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 69 | return "r"; | ^~~ g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c utils_unix.cpp -o utils_unix.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c utils_win32.cpp -o utils_win32.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c validaa.cpp -o validaa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c writearrays.cpp -o writearrays.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c writegff.cpp -o writegff.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c writepiles.cpp -o writepiles.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o pilercr acceptaa.o accepthit.o alignarrays.o alignclust.o alignprofs.o aligntraps.o alnarray.o alngivenpath.o alpha.o assert.o bittb.o clustcons.o clustconsr.o cmp.o comp.o cons.o distcalc.o distfunc.o dp.o estring.o expandpiles.o filterb.o filterb2.o findarrays.o findpiles.o fixbounds.o getarraydata.o getccs.o getconsaa.o getgdtree.o getparams.o getsubseq.o glbalign.o hitstoimages.o info.o kmerdist.o log.o logaa.o loghits.o main.o makecontigmap.o makegraph.o makeindex.o mem.o mergearrays.o mergefilterhits.o mkrootmsa.o msa.o multaln.o options.o outarray.o outdetail.o outdetailaa.o outlocalaln.o params.o pilercr.o proffrommsa.o progaln.o progress.o pwpath.o quit.o readfilterhits.o readmfa.o revcomp.o savefhits.o savefilterhit.o saveseqs.o savetraps.o scoremx.o seq.o seqvect.o swsimple.o tbsw.o tree.o upgma.o usage.o utils.o utils_linux.o utils_other.o utils_unix.o utils_win32.o validaa.o writearrays.o writegff.o writepiles.o -lm make[2]: Leaving directory '/build/reproducible-path/pilercr-1.06+dfsg' help2man ./pilercr \ --name 'software for finding CRISPR repeats' \ --help-option '-options' --no-discard-stderr \ --version-string 1.06+dfsg \ --no-info > pilercr.1 make[1]: Leaving directory '/build/reproducible-path/pilercr-1.06+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/pilercr/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dpkg-shlibdeps: warning: debian/pilercr/usr/bin/pilercr contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'pilercr' in '../pilercr_1.06+dfsg-5_armhf.deb'. dpkg-deb: building package 'pilercr-dbgsym' in '../pilercr-dbgsym_1.06+dfsg-5_armhf.deb'. dpkg-genbuildinfo --build=binary -O../pilercr_1.06+dfsg-5_armhf.buildinfo dpkg-genchanges --build=binary -O../pilercr_1.06+dfsg-5_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/31754 and its subdirectories I: Current time: Sun Nov 24 02:58:33 -12 2024 I: pbuilder-time-stamp: 1732460313 Sun Nov 24 14:58:33 UTC 2024 I: Signing ./b1/pilercr_1.06+dfsg-5_armhf.buildinfo as pilercr_1.06+dfsg-5_armhf.buildinfo.asc Sun Nov 24 14:58:34 UTC 2024 I: Signed ./b1/pilercr_1.06+dfsg-5_armhf.buildinfo as ./b1/pilercr_1.06+dfsg-5_armhf.buildinfo.asc Sun Nov 24 14:58:34 UTC 2024 - build #1 for pilercr/trixie/armhf on wbq0 done. Starting cleanup. All cleanup done. Sun Nov 24 14:58:34 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-seD0VdCp, removing. /srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 24 14:58 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 24 14:51 b2 -rw-r--r-- 1 jenkins jenkins 1986 Aug 16 2021 pilercr_1.06+dfsg-5.dsc -rw------- 1 jenkins jenkins 3105 Nov 24 14:51 rbuildlog.dutIxxl /srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb/b1: total 1364 -rw-r--r-- 1 jenkins jenkins 46467 Nov 24 14:58 build.log -rw-r--r-- 1 jenkins jenkins 1200772 Nov 24 14:58 pilercr-dbgsym_1.06+dfsg-5_armhf.deb -rw-r--r-- 1 jenkins jenkins 8600 Nov 24 14:58 pilercr_1.06+dfsg-5.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1986 Nov 24 14:58 pilercr_1.06+dfsg-5.dsc -rw-r--r-- 1 jenkins jenkins 4890 Nov 24 14:58 pilercr_1.06+dfsg-5_armhf.buildinfo -rw-r--r-- 1 jenkins jenkins 5772 Nov 24 14:58 pilercr_1.06+dfsg-5_armhf.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1546 Nov 24 14:58 pilercr_1.06+dfsg-5_armhf.changes -rw-r--r-- 1 jenkins jenkins 102268 Nov 24 14:58 pilercr_1.06+dfsg-5_armhf.deb -rw-r--r-- 1 jenkins jenkins 1413 Nov 24 14:58 pilercr_1.06+dfsg-5_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb/b2: total 0 Sun Nov 24 14:58:40 UTC 2024 I: Deleting $TMPDIR on wbq0-armhf-rb.debian.net. W: cgroups are not available on the host, not using them. I: pbuilder: network access will be disabled during build I: Current time: Sun Nov 24 02:51:12 -12 2024 I: pbuilder-time-stamp: 1732459872 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pilercr_1.06+dfsg-5.dsc] I: copying [./pilercr_1.06+dfsg.orig.tar.xz] I: copying [./pilercr_1.06+dfsg-5.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Aug 16 08:28:21 2021 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pilercr_1.06+dfsg-5.dsc: no acceptable signature found dpkg-source: info: extracting pilercr in pilercr-1.06+dfsg dpkg-source: info: unpacking pilercr_1.06+dfsg.orig.tar.xz dpkg-source: info: unpacking pilercr_1.06+dfsg-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_unix_builds.patch dpkg-source: info: applying no-static.patch dpkg-source: info: applying debugsymbols.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/31754/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='31754' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb/pbuilderrc_VCTd --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb/b1 --logfile b1/build.log pilercr_1.06+dfsg-5.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/sbin/chroot' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux wbq0 6.1.0-27-armmp #1 SMP Debian 6.1.115-1 (2024-11-01) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/31754/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19690 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 19.3 MB of archives. After unpacking 70.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf liblocale-gettext-perl armhf 1.07-7+b1 [14.7 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.22.5-2 [195 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-5 [1091 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.2-11 [83.6 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf autopoint all 0.22.5-2 [723 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.20 [89.7 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-8 [517 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 23 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-5+b1 [9088 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.22.5-2 [1485 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf debhelper all 13.20 [915 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf help2man armhf 1.49.3 [198 kB] Fetched 19.3 MB in 2s (11.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19690 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_armhf.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3+b1_armhf.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.22.5-2_armhf.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-5_armhf.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.40.2-11_armhf.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../09-libpipeline1_1.5.8-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.0-1_armhf.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../22-libelf1t64_0.192-4_armhf.deb ... Unpacking libelf1t64:armhf (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../24-libicu72_72.1-5+b1_armhf.deb ... Unpacking libicu72:armhf (72.1-5+b1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_armhf.deb ... Unpacking libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.22.5-2_armhf.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package help2man. Preparing to unpack .../30-help2man_1.49.3_armhf.deb ... Unpacking help2man (1.49.3) ... Setting up libpipeline1:armhf (1.5.8-1) ... Setting up libicu72:armhf (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:armhf (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:armhf (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:armhf (0.0.8-1+b2) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pilercr-1.06+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pilercr_1.06+dfsg-5_source.changes dpkg-buildpackage: info: source package pilercr dpkg-buildpackage: info: source version 1.06+dfsg-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/pilercr-1.06+dfsg' rm -f *.o pilercr pilercr.1 make[1]: Leaving directory '/build/reproducible-path/pilercr-1.06+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/pilercr-1.06+dfsg' dpkg-architecture -f -aarmhf -c dh_auto_build -- 'GPP=$(CXX)' make -j3 "INSTALL=install --strip-program=true" GPP=\$\(CXX\) make[2]: Entering directory '/build/reproducible-path/pilercr-1.06+dfsg' g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c acceptaa.cpp -o acceptaa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c accepthit.cpp -o accepthit.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c alignarrays.cpp -o alignarrays.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c alignclust.cpp -o alignclust.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c alignprofs.cpp -o alignprofs.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c aligntraps.cpp -o aligntraps.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c alnarray.cpp -o alnarray.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c alngivenpath.cpp -o alngivenpath.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c alpha.cpp -o alpha.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c assert.cpp -o assert.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c bittb.cpp -o bittb.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c clustcons.cpp -o clustcons.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c clustconsr.cpp -o clustconsr.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c cmp.cpp -o cmp.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c comp.cpp -o comp.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c cons.cpp -o cons.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c distcalc.cpp -o distcalc.o comp.cpp: In function 'void Complement(char*, int)': comp.cpp:31:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 31 | { register unsigned char *s, *t; | ^ comp.cpp:31:33: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 31 | { register unsigned char *s, *t; | ^ g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c distfunc.cpp -o distfunc.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c dp.cpp -o dp.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c estring.cpp -o estring.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c expandpiles.cpp -o expandpiles.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c filterb.cpp -o filterb.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c filterb2.cpp -o filterb2.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c findarrays.cpp -o findarrays.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c findpiles.cpp -o findpiles.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c fixbounds.cpp -o fixbounds.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c getarraydata.cpp -o getarraydata.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c getccs.cpp -o getccs.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c getconsaa.cpp -o getconsaa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c getgdtree.cpp -o getgdtree.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c getparams.cpp -o getparams.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c getsubseq.cpp -o getsubseq.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c glbalign.cpp -o glbalign.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c hitstoimages.cpp -o hitstoimages.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c info.cpp -o info.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c kmerdist.cpp -o kmerdist.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c log.cpp -o log.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c logaa.cpp -o logaa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c loghits.cpp -o loghits.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c main.cpp -o main.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c makecontigmap.cpp -o makecontigmap.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c makegraph.cpp -o makegraph.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c makeindex.cpp -o makeindex.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c mem.cpp -o mem.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c mergearrays.cpp -o mergearrays.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c mergefilterhits.cpp -o mergefilterhits.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c mkrootmsa.cpp -o mkrootmsa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c msa.cpp -o msa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c multaln.cpp -o multaln.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c options.cpp -o options.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c outarray.cpp -o outarray.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c outdetail.cpp -o outdetail.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c outdetailaa.cpp -o outdetailaa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c outlocalaln.cpp -o outlocalaln.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c params.cpp -o params.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c pilercr.cpp -o pilercr.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c proffrommsa.cpp -o proffrommsa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c progaln.cpp -o progaln.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c progress.cpp -o progress.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c pwpath.cpp -o pwpath.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c quit.cpp -o quit.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c readfilterhits.cpp -o readfilterhits.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c readmfa.cpp -o readmfa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c revcomp.cpp -o revcomp.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c savefhits.cpp -o savefhits.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c savefilterhit.cpp -o savefilterhit.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c saveseqs.cpp -o saveseqs.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c savetraps.cpp -o savetraps.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c scoremx.cpp -o scoremx.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c seq.cpp -o seq.o savetraps.cpp: In function 'void SaveTrap(FILE*, const Trapezoid&)': savetraps.cpp:14:76: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 14 | WriteGFFRecord(f, QueryFrom, QueryTo, TargetFrom, TargetTo, false, "trap", 0, 0); | ^~~~~~ g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c seqvect.cpp -o seqvect.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c swsimple.cpp -o swsimple.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c tbsw.cpp -o tbsw.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c tree.cpp -o tree.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c upgma.cpp -o upgma.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c usage.cpp -o usage.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c utils.cpp -o utils.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c utils_linux.cpp -o utils_linux.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c utils_other.cpp -o utils_other.o In file included from pilercr.h:38, from utils.cpp:1: utils.cpp: In function 'char* StdioStrMode(FILEIO_MODE)': types.h:113:41: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 113 | #define FILIO_STRMODE_ReadOnly "r" | ^~~ utils.cpp:62:24: note: in expansion of macro 'FILIO_STRMODE_ReadOnly' 62 | return FILIO_STRMODE_ReadOnly; | ^~~~~~~~~~~~~~~~~~~~~~ types.h:114:41: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 114 | #define FILIO_STRMODE_WriteOnly "w" | ^~~ utils.cpp:64:24: note: in expansion of macro 'FILIO_STRMODE_WriteOnly' 64 | return FILIO_STRMODE_WriteOnly; | ^~~~~~~~~~~~~~~~~~~~~~~ types.h:115:41: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 115 | #define FILIO_STRMODE_ReadWrite "w+" | ^~~~ utils.cpp:66:24: note: in expansion of macro 'FILIO_STRMODE_ReadWrite' 66 | return FILIO_STRMODE_ReadWrite; | ^~~~~~~~~~~~~~~~~~~~~~~ utils.cpp:69:16: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 69 | return "r"; | ^~~ g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c utils_unix.cpp -o utils_unix.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c utils_win32.cpp -o utils_win32.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c validaa.cpp -o validaa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c writearrays.cpp -o writearrays.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c writegff.cpp -o writegff.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c writepiles.cpp -o writepiles.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o pilercr acceptaa.o accepthit.o alignarrays.o alignclust.o alignprofs.o aligntraps.o alnarray.o alngivenpath.o alpha.o assert.o bittb.o clustcons.o clustconsr.o cmp.o comp.o cons.o distcalc.o distfunc.o dp.o estring.o expandpiles.o filterb.o filterb2.o findarrays.o findpiles.o fixbounds.o getarraydata.o getccs.o getconsaa.o getgdtree.o getparams.o getsubseq.o glbalign.o hitstoimages.o info.o kmerdist.o log.o logaa.o loghits.o main.o makecontigmap.o makegraph.o makeindex.o mem.o mergearrays.o mergefilterhits.o mkrootmsa.o msa.o multaln.o options.o outarray.o outdetail.o outdetailaa.o outlocalaln.o params.o pilercr.o proffrommsa.o progaln.o progress.o pwpath.o quit.o readfilterhits.o readmfa.o revcomp.o savefhits.o savefilterhit.o saveseqs.o savetraps.o scoremx.o seq.o seqvect.o swsimple.o tbsw.o tree.o upgma.o usage.o utils.o utils_linux.o utils_other.o utils_unix.o utils_win32.o validaa.o writearrays.o writegff.o writepiles.o -lm make[2]: Leaving directory '/build/reproducible-path/pilercr-1.06+dfsg' help2man ./pilercr \ --name 'software for finding CRISPR repeats' \ --help-option '-options' --no-discard-stderr \ --version-string 1.06+dfsg \ --no-info > pilercr.1 make[1]: Leaving directory '/build/reproducible-path/pilercr-1.06+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/pilercr/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dpkg-shlibdeps: warning: debian/pilercr/usr/bin/pilercr contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'pilercr' in '../pilercr_1.06+dfsg-5_armhf.deb'. dpkg-deb: building package 'pilercr-dbgsym' in '../pilercr-dbgsym_1.06+dfsg-5_armhf.deb'. dpkg-genbuildinfo --build=binary -O../pilercr_1.06+dfsg-5_armhf.buildinfo dpkg-genchanges --build=binary -O../pilercr_1.06+dfsg-5_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/31754 and its subdirectories I: Current time: Sun Nov 24 02:58:33 -12 2024 I: pbuilder-time-stamp: 1732460313 Sun Nov 24 14:58:43 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt64b-armhf-rb.debian.net. Sun Nov 24 14:58:43 UTC 2024 I: Preparing to do remote build '2' on virt64b-armhf-rb.debian.net. Sun Nov 24 14:58:43 UTC 2024 - checking /var/lib/jenkins/offline_nodes if virt64b-armhf-rb.debian.net is marked as down. Sun Nov 24 14:58:43 UTC 2024 - checking via ssh if virt64b-armhf-rb.debian.net is up. removed '/tmp/read-only-fs-test-OR06sF' ==================================================================================== Sun Nov 24 14:58:48 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on virt64b, called using "2 pilercr trixie /srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb 1.06+dfsg-5" as arguments. Sun Nov 24 14:58:48 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-ONpFCDbw" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Nov 24 14:58:48 UTC 2024 I: Downloading source for trixie/pilercr=1.06+dfsg-5 Reading package lists... NOTICE: 'pilercr' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/pilercr.git Please use: git clone https://salsa.debian.org/med-team/pilercr.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 90.7 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main pilercr 1.06+dfsg-5 (dsc) [1986 B] Get:2 http://deb.debian.org/debian trixie/main pilercr 1.06+dfsg-5 (tar) [80.1 kB] Get:3 http://deb.debian.org/debian trixie/main pilercr 1.06+dfsg-5 (diff) [8600 B] Fetched 90.7 kB in 0s (4021 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'pilercr' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/pilercr.git Please use: git clone https://salsa.debian.org/med-team/pilercr.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 90.7 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main pilercr 1.06+dfsg-5 (dsc) [1986 B] Get:2 http://deb.debian.org/debian trixie/main pilercr 1.06+dfsg-5 (tar) [80.1 kB] Get:3 http://deb.debian.org/debian trixie/main pilercr 1.06+dfsg-5 (diff) [8600 B] Fetched 90.7 kB in 0s (4021 kB/s) Download complete and in download only mode ============================================================================= Re-Building pilercr in trixie on armhf on virt64b now. Date: Sun Nov 24 06:58:48 PST 2024 Date UTC: Sun Nov 24 14:58:48 UTC 2024 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb/pbuilderrc_YgeB + case ${ARCH} in + case $NUM_CPU in + case $ARCH in + locale=it_CH + language=it + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' pilercr = debian-installer -o pilercr = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' pilercr = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb/pbuilderrc_YgeB --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb/b2 --logfile b2/build.log pilercr_1.06+dfsg-5.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Mon Nov 25 04:58:49 +14 2024 I: pbuilder-time-stamp: 1732460329 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pilercr_1.06+dfsg-5.dsc] I: copying [./pilercr_1.06+dfsg.orig.tar.xz] I: copying [./pilercr_1.06+dfsg-5.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Aug 16 08:28:21 2021 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pilercr_1.06+dfsg-5.dsc: no acceptable signature found dpkg-source: info: extracting pilercr in pilercr-1.06+dfsg dpkg-source: info: unpacking pilercr_1.06+dfsg.orig.tar.xz dpkg-source: info: unpacking pilercr_1.06+dfsg-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_unix_builds.patch dpkg-source: info: applying no-static.patch dpkg-source: info: applying debugsymbols.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/6895/tmp/hooks/D01_modify_environment starting debug: Running on virt64b. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Nov 24 14:59 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/6895/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/6895/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=armhf DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=arm HOST_ARCH=armhf IFS=' ' INVOCATION_ID=d86119ec757b465491acbe12c27bbd33 LANG=C LANGUAGE=it_CH:it LC_ALL=C MACHTYPE=arm-unknown-linux-gnueabihf MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnueabihf PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=6895 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb/pbuilderrc_YgeB --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb/b2 --logfile b2/build.log pilercr_1.06+dfsg-5.dsc' SUDO_GID=113 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://10.0.0.15:3142/ I: uname -a Linux i-capture-the-hostname 6.1.0-27-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/6895/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19690 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 19.3 MB of archives. After unpacking 70.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf liblocale-gettext-perl armhf 1.07-7+b1 [14.7 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.22.5-2 [195 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-5 [1091 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.2-11 [83.6 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf autopoint all 0.22.5-2 [723 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.20 [89.7 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-8 [517 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 23 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-5+b1 [9088 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.22.5-2 [1485 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf debhelper all 13.20 [915 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf help2man armhf 1.49.3 [198 kB] Fetched 19.3 MB in 1s (27.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19690 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_armhf.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3+b1_armhf.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.22.5-2_armhf.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-5_armhf.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.40.2-11_armhf.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../09-libpipeline1_1.5.8-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.0-1_armhf.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../22-libelf1t64_0.192-4_armhf.deb ... Unpacking libelf1t64:armhf (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../24-libicu72_72.1-5+b1_armhf.deb ... Unpacking libicu72:armhf (72.1-5+b1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_armhf.deb ... Unpacking libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.22.5-2_armhf.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package help2man. Preparing to unpack .../30-help2man_1.49.3_armhf.deb ... Unpacking help2man (1.49.3) ... Setting up libpipeline1:armhf (1.5.8-1) ... Setting up libicu72:armhf (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:armhf (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:armhf (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:armhf (0.0.8-1+b2) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/6895/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/6895/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/pilercr-1.06+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../pilercr_1.06+dfsg-5_source.changes dpkg-buildpackage: info: source package pilercr dpkg-buildpackage: info: source version 1.06+dfsg-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/pilercr-1.06+dfsg' rm -f *.o pilercr pilercr.1 make[1]: Leaving directory '/build/reproducible-path/pilercr-1.06+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/pilercr-1.06+dfsg' dpkg-architecture -f -aarmhf -c dh_auto_build -- 'GPP=$(CXX)' make -j4 "INSTALL=install --strip-program=true" GPP=\$\(CXX\) make[2]: Entering directory '/build/reproducible-path/pilercr-1.06+dfsg' g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c acceptaa.cpp -o acceptaa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c accepthit.cpp -o accepthit.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c alignarrays.cpp -o alignarrays.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c alignclust.cpp -o alignclust.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c alignprofs.cpp -o alignprofs.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c aligntraps.cpp -o aligntraps.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c alnarray.cpp -o alnarray.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c alngivenpath.cpp -o alngivenpath.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c alpha.cpp -o alpha.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c assert.cpp -o assert.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c bittb.cpp -o bittb.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c clustcons.cpp -o clustcons.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c clustconsr.cpp -o clustconsr.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c cmp.cpp -o cmp.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c comp.cpp -o comp.o comp.cpp: In function 'void Complement(char*, int)': comp.cpp:31:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 31 | { register unsigned char *s, *t; | ^ comp.cpp:31:33: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 31 | { register unsigned char *s, *t; | ^ g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c cons.cpp -o cons.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c distcalc.cpp -o distcalc.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c distfunc.cpp -o distfunc.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c dp.cpp -o dp.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c estring.cpp -o estring.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c expandpiles.cpp -o expandpiles.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c filterb.cpp -o filterb.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c filterb2.cpp -o filterb2.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c findarrays.cpp -o findarrays.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c findpiles.cpp -o findpiles.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c fixbounds.cpp -o fixbounds.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c getarraydata.cpp -o getarraydata.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c getccs.cpp -o getccs.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c getconsaa.cpp -o getconsaa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c getgdtree.cpp -o getgdtree.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c getparams.cpp -o getparams.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c getsubseq.cpp -o getsubseq.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c glbalign.cpp -o glbalign.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c hitstoimages.cpp -o hitstoimages.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c info.cpp -o info.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c kmerdist.cpp -o kmerdist.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c log.cpp -o log.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c logaa.cpp -o logaa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c loghits.cpp -o loghits.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c main.cpp -o main.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c makecontigmap.cpp -o makecontigmap.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c makegraph.cpp -o makegraph.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c makeindex.cpp -o makeindex.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c mem.cpp -o mem.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c mergearrays.cpp -o mergearrays.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c mergefilterhits.cpp -o mergefilterhits.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c mkrootmsa.cpp -o mkrootmsa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c msa.cpp -o msa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c multaln.cpp -o multaln.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c options.cpp -o options.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c outarray.cpp -o outarray.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c outdetail.cpp -o outdetail.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c outdetailaa.cpp -o outdetailaa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c outlocalaln.cpp -o outlocalaln.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c params.cpp -o params.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c pilercr.cpp -o pilercr.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c proffrommsa.cpp -o proffrommsa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c progaln.cpp -o progaln.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c progress.cpp -o progress.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c pwpath.cpp -o pwpath.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c quit.cpp -o quit.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c readfilterhits.cpp -o readfilterhits.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c readmfa.cpp -o readmfa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c revcomp.cpp -o revcomp.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c savefhits.cpp -o savefhits.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c savefilterhit.cpp -o savefilterhit.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c saveseqs.cpp -o saveseqs.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c savetraps.cpp -o savetraps.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c scoremx.cpp -o scoremx.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c seq.cpp -o seq.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c seqvect.cpp -o seqvect.o savetraps.cpp: In function 'void SaveTrap(FILE*, const Trapezoid&)': savetraps.cpp:14:76: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 14 | WriteGFFRecord(f, QueryFrom, QueryTo, TargetFrom, TargetTo, false, "trap", 0, 0); | ^~~~~~ g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c swsimple.cpp -o swsimple.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c tbsw.cpp -o tbsw.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c tree.cpp -o tree.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c upgma.cpp -o upgma.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c usage.cpp -o usage.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c utils.cpp -o utils.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c utils_linux.cpp -o utils_linux.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c utils_other.cpp -o utils_other.o In file included from pilercr.h:38, from utils.cpp:1: utils.cpp: In function 'char* StdioStrMode(FILEIO_MODE)': types.h:113:41: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 113 | #define FILIO_STRMODE_ReadOnly "r" | ^~~ utils.cpp:62:24: note: in expansion of macro 'FILIO_STRMODE_ReadOnly' 62 | return FILIO_STRMODE_ReadOnly; | ^~~~~~~~~~~~~~~~~~~~~~ types.h:114:41: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 114 | #define FILIO_STRMODE_WriteOnly "w" | ^~~ utils.cpp:64:24: note: in expansion of macro 'FILIO_STRMODE_WriteOnly' 64 | return FILIO_STRMODE_WriteOnly; | ^~~~~~~~~~~~~~~~~~~~~~~ types.h:115:41: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 115 | #define FILIO_STRMODE_ReadWrite "w+" | ^~~~ utils.cpp:66:24: note: in expansion of macro 'FILIO_STRMODE_ReadWrite' 66 | return FILIO_STRMODE_ReadWrite; | ^~~~~~~~~~~~~~~~~~~~~~~ utils.cpp:69:16: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 69 | return "r"; | ^~~ g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c utils_unix.cpp -o utils_unix.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c utils_win32.cpp -o utils_win32.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c validaa.cpp -o validaa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c writearrays.cpp -o writearrays.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c writegff.cpp -o writegff.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c writepiles.cpp -o writepiles.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o pilercr acceptaa.o accepthit.o alignarrays.o alignclust.o alignprofs.o aligntraps.o alnarray.o alngivenpath.o alpha.o assert.o bittb.o clustcons.o clustconsr.o cmp.o comp.o cons.o distcalc.o distfunc.o dp.o estring.o expandpiles.o filterb.o filterb2.o findarrays.o findpiles.o fixbounds.o getarraydata.o getccs.o getconsaa.o getgdtree.o getparams.o getsubseq.o glbalign.o hitstoimages.o info.o kmerdist.o log.o logaa.o loghits.o main.o makecontigmap.o makegraph.o makeindex.o mem.o mergearrays.o mergefilterhits.o mkrootmsa.o msa.o multaln.o options.o outarray.o outdetail.o outdetailaa.o outlocalaln.o params.o pilercr.o proffrommsa.o progaln.o progress.o pwpath.o quit.o readfilterhits.o readmfa.o revcomp.o savefhits.o savefilterhit.o saveseqs.o savetraps.o scoremx.o seq.o seqvect.o swsimple.o tbsw.o tree.o upgma.o usage.o utils.o utils_linux.o utils_other.o utils_unix.o utils_win32.o validaa.o writearrays.o writegff.o writepiles.o -lm make[2]: Leaving directory '/build/reproducible-path/pilercr-1.06+dfsg' help2man ./pilercr \ --name 'software for finding CRISPR repeats' \ --help-option '-options' --no-discard-stderr \ --version-string 1.06+dfsg \ --no-info > pilercr.1 make[1]: Leaving directory '/build/reproducible-path/pilercr-1.06+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/pilercr/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dpkg-shlibdeps: warning: debian/pilercr/usr/bin/pilercr contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'pilercr' in '../pilercr_1.06+dfsg-5_armhf.deb'. dpkg-deb: building package 'pilercr-dbgsym' in '../pilercr-dbgsym_1.06+dfsg-5_armhf.deb'. dpkg-genbuildinfo --build=binary -O../pilercr_1.06+dfsg-5_armhf.buildinfo dpkg-genchanges --build=binary -O../pilercr_1.06+dfsg-5_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/6895/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/6895/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/6895 and its subdirectories I: Current time: Mon Nov 25 05:00:59 +14 2024 I: pbuilder-time-stamp: 1732460459 + false + set +x Sun Nov 24 15:00:59 UTC 2024 I: Signing ./b2/pilercr_1.06+dfsg-5_armhf.buildinfo as pilercr_1.06+dfsg-5_armhf.buildinfo.asc Sun Nov 24 15:00:59 UTC 2024 I: Signed ./b2/pilercr_1.06+dfsg-5_armhf.buildinfo as ./b2/pilercr_1.06+dfsg-5_armhf.buildinfo.asc Sun Nov 24 15:00:59 UTC 2024 - build #2 for pilercr/trixie/armhf on virt64b done. Starting cleanup. All cleanup done. Sun Nov 24 15:00:59 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-ONpFCDbw, removing. /srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb: total 68 drwxr-xr-x 2 jenkins jenkins 4096 Nov 24 14:58 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 24 15:01 b2 -rw-r--r-- 1 jenkins jenkins 1986 Aug 16 2021 pilercr_1.06+dfsg-5.dsc -rw------- 1 jenkins jenkins 49867 Nov 24 14:58 rbuildlog.dutIxxl /srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb/b1: total 1372 -rw-r--r-- 1 jenkins jenkins 46467 Nov 24 14:58 build.log -rw-r--r-- 1 jenkins jenkins 1200772 Nov 24 14:58 pilercr-dbgsym_1.06+dfsg-5_armhf.deb -rw-r--r-- 1 jenkins jenkins 8600 Nov 24 14:58 pilercr_1.06+dfsg-5.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1986 Nov 24 14:58 pilercr_1.06+dfsg-5.dsc -rw-r--r-- 1 jenkins jenkins 4890 Nov 24 14:58 pilercr_1.06+dfsg-5_armhf.buildinfo -rw-r--r-- 1 jenkins jenkins 5772 Nov 24 14:58 pilercr_1.06+dfsg-5_armhf.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1546 Nov 24 14:58 pilercr_1.06+dfsg-5_armhf.changes -rw-r--r-- 1 jenkins jenkins 102268 Nov 24 14:58 pilercr_1.06+dfsg-5_armhf.deb -rw-r--r-- 1 jenkins jenkins 1413 Nov 24 14:58 pilercr_1.06+dfsg-5_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb/b2: total 1364 -rw-r--r-- 1 jenkins jenkins 48395 Nov 24 15:01 build.log -rw-r--r-- 1 jenkins jenkins 1200772 Nov 24 15:01 pilercr-dbgsym_1.06+dfsg-5_armhf.deb -rw-r--r-- 1 jenkins jenkins 8600 Nov 24 15:01 pilercr_1.06+dfsg-5.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1986 Nov 24 15:01 pilercr_1.06+dfsg-5.dsc -rw-r--r-- 1 jenkins jenkins 4890 Nov 24 15:01 pilercr_1.06+dfsg-5_armhf.buildinfo -rw-r--r-- 1 jenkins jenkins 5772 Nov 24 15:01 pilercr_1.06+dfsg-5_armhf.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1546 Nov 24 15:01 pilercr_1.06+dfsg-5_armhf.changes -rw-r--r-- 1 jenkins jenkins 102268 Nov 24 15:01 pilercr_1.06+dfsg-5_armhf.deb -rw-r--r-- 1 jenkins jenkins 1413 Nov 24 15:01 pilercr_1.06+dfsg-5_source.changes Sun Nov 24 15:01:10 UTC 2024 I: Deleting $TMPDIR on virt64b-armhf-rb.debian.net. Sun Nov 24 15:01:13 UTC 2024 I: pilercr_1.06+dfsg-5_armhf.changes: Format: 1.8 Date: Mon, 16 Aug 2021 13:54:23 +0530 Source: pilercr Binary: pilercr pilercr-dbgsym Architecture: armhf Version: 1.06+dfsg-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: pilercr - software for finding CRISPR repeats Changes: pilercr (1.06+dfsg-5) unstable; urgency=medium . [ Shruti Sridhar ] * Team upload. * Add test data * Add autopkgtests * Install README as docs . [ Nilesh Patra ] * d/tests/get-test-data: Add script for fetching data * d/docs: Install get-test-data script Checksums-Sha1: 93b23a47c05708cb260461f5a72cf1fee0909f77 1200772 pilercr-dbgsym_1.06+dfsg-5_armhf.deb 5d1daa761c4fee1b1b3815b0ed04f23d0026ef7f 4890 pilercr_1.06+dfsg-5_armhf.buildinfo f2e105a89fbba2e00aa4ff57870e22b1cf5f12f6 102268 pilercr_1.06+dfsg-5_armhf.deb Checksums-Sha256: 0f92d28da62607f99782aefe38cd8f3176afdc9a73fe6ddc1b8f9d8b3f25b62e 1200772 pilercr-dbgsym_1.06+dfsg-5_armhf.deb 1669d0ab2ef84593855d7a49f4fdea326fe2687ae39d41249cd1c0e15eb82335 4890 pilercr_1.06+dfsg-5_armhf.buildinfo 008287217bc7e49a6021ac300d051c5d93e2264d77712742c5d606470e8cf47c 102268 pilercr_1.06+dfsg-5_armhf.deb Files: 2e899e0d0b7eebec8a41a3a8fd809f97 1200772 debug optional pilercr-dbgsym_1.06+dfsg-5_armhf.deb e3d6d90cfb61e5a24feb0fccf85cadf2 4890 science optional pilercr_1.06+dfsg-5_armhf.buildinfo 784c75b3970206839141438f525a4061 102268 science optional pilercr_1.06+dfsg-5_armhf.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/armhf/pilercr_1.06+dfsg-5.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/armhf/pilercr_1.06+dfsg-5.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/pilercr_1.06+dfsg-5.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/pilercr_1.06+dfsg-5.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/armhf/pilercr_1.06+dfsg-5_armhf.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/pilercr_1.06+dfsg-5.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-11-24 14:58:38.131695450 +0000 +++ b2/build.log 2024-11-24 15:01:03.701059507 +0000 @@ -1,7 +1,6 @@ -W: cgroups are not available on the host, not using them. I: pbuilder: network access will be disabled during build -I: Current time: Sun Nov 24 02:51:12 -12 2024 -I: pbuilder-time-stamp: 1732459872 +I: Current time: Mon Nov 25 04:58:49 +14 2024 +I: pbuilder-time-stamp: 1732460329 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -31,51 +30,84 @@ dpkg-source: info: applying debugsymbols.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/31754/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/6895/tmp/hooks/D01_modify_environment starting +debug: Running on virt64b. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 24 14:59 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/6895/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/6895/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='31754' - PS1='# ' - PS2='> ' + INVOCATION_ID=d86119ec757b465491acbe12c27bbd33 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=6895 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb/pbuilderrc_VCTd --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb/b1 --logfile b1/build.log pilercr_1.06+dfsg-5.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/sbin/chroot' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb/pbuilderrc_YgeB --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb/b2 --logfile b2/build.log pilercr_1.06+dfsg-5.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux wbq0 6.1.0-27-armmp #1 SMP Debian 6.1.115-1 (2024-11-01) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-27-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/31754/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/6895/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -144,7 +176,7 @@ Get: 29 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf debhelper all 13.20 [915 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf help2man armhf 1.49.3 [198 kB] -Fetched 19.3 MB in 2s (11.8 MB/s) +Fetched 19.3 MB in 1s (27.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19690 files and directories currently installed.) @@ -283,7 +315,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/pilercr-1.06+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pilercr_1.06+dfsg-5_source.changes +I: user script /srv/workspace/pbuilder/6895/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/6895/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/pilercr-1.06+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../pilercr_1.06+dfsg-5_source.changes dpkg-buildpackage: info: source package pilercr dpkg-buildpackage: info: source version 1.06+dfsg-5 dpkg-buildpackage: info: source distribution unstable @@ -305,7 +341,7 @@ debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/pilercr-1.06+dfsg' dpkg-architecture -f -aarmhf -c dh_auto_build -- 'GPP=$(CXX)' - make -j3 "INSTALL=install --strip-program=true" GPP=\$\(CXX\) + make -j4 "INSTALL=install --strip-program=true" GPP=\$\(CXX\) make[2]: Entering directory '/build/reproducible-path/pilercr-1.06+dfsg' g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c acceptaa.cpp -o acceptaa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c accepthit.cpp -o accepthit.o @@ -322,8 +358,6 @@ g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c clustconsr.cpp -o clustconsr.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c cmp.cpp -o cmp.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c comp.cpp -o comp.o -g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c cons.cpp -o cons.o -g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c distcalc.cpp -o distcalc.o comp.cpp: In function 'void Complement(char*, int)': comp.cpp:31:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 31 | { register unsigned char *s, *t; @@ -331,6 +365,8 @@ comp.cpp:31:33: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 31 | { register unsigned char *s, *t; | ^ +g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c cons.cpp -o cons.o +g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c distcalc.cpp -o distcalc.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c distfunc.cpp -o distfunc.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c dp.cpp -o dp.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c estring.cpp -o estring.o @@ -384,11 +420,11 @@ g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c savetraps.cpp -o savetraps.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c scoremx.cpp -o scoremx.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c seq.cpp -o seq.o +g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c seqvect.cpp -o seqvect.o savetraps.cpp: In function 'void SaveTrap(FILE*, const Trapezoid&)': savetraps.cpp:14:76: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 14 | WriteGFFRecord(f, QueryFrom, QueryTo, TargetFrom, TargetTo, false, "trap", 0, 0); | ^~~~~~ -g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c seqvect.cpp -o seqvect.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c swsimple.cpp -o swsimple.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c tbsw.cpp -o tbsw.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c tree.cpp -o tree.o @@ -472,12 +508,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/6895/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/6895/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/31754 and its subdirectories -I: Current time: Sun Nov 24 02:58:33 -12 2024 -I: pbuilder-time-stamp: 1732460313 +I: removing directory /srv/workspace/pbuilder/6895 and its subdirectories +I: Current time: Mon Nov 25 05:00:59 +14 2024 +I: pbuilder-time-stamp: 1732460459 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/pilercr_1.06+dfsg-5.diff: 75.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/pilercr_1.06+dfsg-5.diff.gz b2/build.log: 84.3% -- replaced with stdout Compressing the 1st log... b1/build.log: 85.0% -- replaced with stdout Sun Nov 24 15:01:14 UTC 2024 I: diffoscope 283 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_pilercr_trixie_armhf_1732460475 + touch /var/log/reproducible-builds/diffoscope_stamp_pilercr_trixie_armhf_1732460475 + RESULT=0 + systemd-run '--description=diffoscope on pilercr/1.06+dfsg-5 in trixie/armhf' --slice=rb-build-diffoscope.slice -u rb-diffoscope-armhf_11-6869 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb --run-session -c jenkins-reproducible-trixie-diffoscope-ec0479e1-5bff-4e49-b8ca-c5f75174b44d -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb/dbd-tmp-57Vu6Gi ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb/pilercr_1.06+dfsg-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb/pilercr_1.06+dfsg-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb/pilercr_1.06+dfsg-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb/b1/pilercr_1.06+dfsg-5_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb/b2/pilercr_1.06+dfsg-5_armhf.changes' + false + set +x Running as unit: rb-diffoscope-armhf_11-6869.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb/pilercr_1.06+dfsg-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb/pilercr_1.06+dfsg-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb/pilercr_1.06+dfsg-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb/b1/pilercr_1.06+dfsg-5_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.R87VMBZb/b2/pilercr_1.06+dfsg-5_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.392s) 0.392s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.028s) 0.028s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 756ms CPU time consumed: 752ms _ _ _ __ (_) | ___ _ __ ___ _ __ | '_ \| | |/ _ \ '__/ __| '__| | |_) | | | __/ | | (__| | | .__/|_|_|\___|_| \___|_| |_| Sun Nov 24 15:01:16 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Sun Nov 24 15:01:16 UTC 2024 I: pilercr from trixie built successfully and reproducibly on armhf. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-24 15:01:16] INFO: Starting at 2024-11-24 15:01:16.908088 [2024-11-24 15:01:17] INFO: Generating the pages of 1 package(s) [2024-11-24 15:01:17] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/armhf/pilercr didn't produce a buildlog, even though it has been built. [2024-11-24 15:01:17] INFO: Finished at 2024-11-24 15:01:17.481669, took: 0:00:00.573589 Sun Nov 24 15:01:17 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/armhf/pilercr.html Sun Nov 24 15:01:17 UTC 2024 I: Submitting .buildinfo files to external archives: Sun Nov 24 15:01:17 UTC 2024 I: Submitting 8.0K b1/pilercr_1.06+dfsg-5_armhf.buildinfo.asc https://buildinfo.debian.net/5d1daa761c4fee1b1b3815b0ed04f23d0026ef7f/pilercr_1.06+dfsg-5_armhf Sun Nov 24 15:01:47 UTC 2024 I: Submitting 8.0K b2/pilercr_1.06+dfsg-5_armhf.buildinfo.asc https://buildinfo.debian.net/49a51abae9588b1dd1e2c32aaae80f92e781a8dd/pilercr_1.06+dfsg-5_armhf Sun Nov 24 15:02:12 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Nov 24 15:02:12 UTC 2024 I: Done submitting .buildinfo files. Sun Nov 24 15:02:12 UTC 2024 I: Removing signed pilercr_1.06+dfsg-5_armhf.buildinfo.asc files: removed './b1/pilercr_1.06+dfsg-5_armhf.buildinfo.asc' removed './b2/pilercr_1.06+dfsg-5_armhf.buildinfo.asc' 1732460532 armhf trixie pilercr Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/armhf/pilercr_1.06+dfsg-5.rbuild.log: 81.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/armhf/pilercr_1.06+dfsg-5.rbuild.log.gz [2024-11-24 15:02:12] INFO: Starting at 2024-11-24 15:02:12.544539 [2024-11-24 15:02:12] INFO: Generating the pages of 1 package(s) [2024-11-24 15:02:12] INFO: Finished at 2024-11-24 15:02:12.957824, took: 0:00:00.413294 All cleanup done. Sun Nov 24 15:02:13 UTC 2024 - total duration: 0h 10m 34s. Sun Nov 24 15:02:13 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-VFEed3H5, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 11min 30.560s CPU time consumed: 8.250s