Running as unit: rb-build-armhf_6-13395.service ==================================================================================== Wed Jan 22 17:21:12 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_armhf_6) on jenkins, called using "virt64b-armhf-rb virt32z-armhf-rb" as arguments. Wed Jan 22 17:21:12 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-BAVcS4In" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Jan 22 17:21:12 UTC 2025 - checking /var/lib/jenkins/offline_nodes if virt64b-armhf-rb.debian.net is marked as down. Wed Jan 22 17:21:12 UTC 2025 - checking via ssh if virt64b-armhf-rb.debian.net is up. removed '/tmp/read-only-fs-test-3hx0gx' Wed Jan 22 17:21:14 UTC 2025 - checking /var/lib/jenkins/offline_nodes if virt32z-armhf-rb.debian.net is marked as down. Wed Jan 22 17:21:14 UTC 2025 - checking via ssh if virt32z-armhf-rb.debian.net is up. removed '/tmp/read-only-fs-test-BbmGky' ok, let's check if r-bioc-genefilter is building anywhere yet… ok, r-bioc-genefilter is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of r-bioc-genefilter in trixie on armhf on jenkins now. 1st build will be done on virt64b-armhf-rb.debian.net. 2nd build will be done on virt32z-armhf-rb.debian.net. ============================================================================= Wed Jan 22 17:21:37 UTC 2025 I: starting to build r-bioc-genefilter/trixie/armhf on jenkins on '2025-01-22 17:21' Wed Jan 22 17:21:37 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_6/13395/console.log 1737566497 armhf trixie r-bioc-genefilter Wed Jan 22 17:21:37 UTC 2025 I: Downloading source for trixie/r-bioc-genefilter=1.88.0-2 --2025-01-22 17:21:37-- http://deb.debian.org/debian/pool/main/r/r-bioc-genefilter/r-bioc-genefilter_1.88.0-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2229 (2.2K) [text/prs.lines.tag] Saving to: ‘r-bioc-genefilter_1.88.0-2.dsc’ 0K .. 100% 364M=0s 2025-01-22 17:21:37 (364 MB/s) - ‘r-bioc-genefilter_1.88.0-2.dsc’ saved [2229/2229] --2025-01-22 17:21:37-- http://deb.debian.org/debian/pool/main/r/r-bioc-genefilter/r-bioc-genefilter_1.88.0-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2229 (2.2K) [text/prs.lines.tag] Saving to: ‘r-bioc-genefilter_1.88.0-2.dsc’ 0K .. 100% 364M=0s 2025-01-22 17:21:37 (364 MB/s) - ‘r-bioc-genefilter_1.88.0-2.dsc’ saved [2229/2229] Wed Jan 22 17:21:37 UTC 2025 I: r-bioc-genefilter_1.88.0-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-genefilter Binary: r-bioc-genefilter Architecture: any Version: 1.88.0-2 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Homepage: https://bioconductor.org/packages/genefilter/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-genefilter Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-genefilter.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-matrixgenerics (>= 1.11.1), r-bioc-annotationdbi, r-bioc-annotate, r-bioc-biobase, r-cran-survival, architecture-is-64-bit Package-List: r-bioc-genefilter deb gnu-r optional arch=any Checksums-Sha1: 9e2fd51f9abda0b755108ffa00533dacc146734f 1122416 r-bioc-genefilter_1.88.0.orig.tar.gz 891519dafe99abd7abc3f52280759916c6455c20 5152 r-bioc-genefilter_1.88.0-2.debian.tar.xz Checksums-Sha256: cd7fa6d046adbefd344a25c9ee0139713a7ef16647340628ea01145ade89b5b0 1122416 r-bioc-genefilter_1.88.0.orig.tar.gz f3aa8a3736cf8b71d427fd70ea4f264dc719831198441e5e94ae68e5e612d70f 5152 r-bioc-genefilter_1.88.0-2.debian.tar.xz Files: 95bc8cdec8e895d1f36507ace3dc0b3c 1122416 r-bioc-genefilter_1.88.0.orig.tar.gz d2beafd0fa20158c028cdd73976af61c 5152 r-bioc-genefilter_1.88.0-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmeFGYESHGNydXNvZUBk ZWJpYW4ub3JnAAoJEDwmdj9sZ+biHCgQAJ615Hk3qbRq0/uvCOEJhEYdO+1Ge71K +yjAsN8sSLeTmQIgdIoGhixa16NiipDnkLfifjQtzxxdlS/mom5GflblHC87G2eN zpdRa+aT5XJVuep6bFnXBuNEP4ngRfaUuDNHDDwYO2y3zDGmi3i/HIZNo+dNcUKf zbeM7H9kpb/3IX8xkoT3M+rAKk0i1a9RJDVD2gbefZfchq/d9cOaF5LPr3E3og5D wxOKswF02QcpLivmQIvF3dh9YG/aExGyNu3T61kVwFr3ih+PI3hy3JYVRyszhOmB OeP7vE5YnvyWxekJti1AAswh0V0fVy6fdglVQxb+ERSG0IjuIkwMk+5k5f0BvLHD FkBTZibs0OiwiMCs3jCgssIxbXfSpFjRuhUzsotoASk1UtSyT4BBmwnyaR0kUpW4 fsbCn1U9Tnlh13i+0wEZFKoFTCM/FmAy2P9XohWRrj0+qhhmsvKtPdNSZ4aWrota UOOsRYrMgtrdNIO0DjU9cxpdKUwblTNyvxzaJRTua3OMZ4JKDRP0IfZ43Tyg47E5 i9CPPJLBQaqzzzIO4s+7tOVH+XP+Alldpz9DP46Nu6M8As0OVuRKaFm5MgvpzoFJ yopwVPL5p7LplHdf5ldM2IVLZolfL0oFiNVIHQOJv5+0Wd+biKh8z8q/KmVL9Bxy Ca7xzQRSp9xX =j1fZ -----END PGP SIGNATURE----- Wed Jan 22 17:21:37 UTC 2025 I: Checking whether the package is not for us Wed Jan 22 17:21:37 UTC 2025 I: Starting 1st build on remote node virt64b-armhf-rb.debian.net. Wed Jan 22 17:21:37 UTC 2025 I: Preparing to do remote build '1' on virt64b-armhf-rb.debian.net. Wed Jan 22 17:21:37 UTC 2025 - checking /var/lib/jenkins/offline_nodes if virt64b-armhf-rb.debian.net is marked as down. Wed Jan 22 17:21:37 UTC 2025 - checking via ssh if virt64b-armhf-rb.debian.net is up. removed '/tmp/read-only-fs-test-7YXIWE' ==================================================================================== Wed Jan 22 17:21:42 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on virt64b, called using "1 r-bioc-genefilter trixie /srv/reproducible-results/rbuild-debian/r-b-build.89s4KC4Q 1.88.0-2" as arguments. Wed Jan 22 17:21:42 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-QavcAfVU" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Jan 22 17:21:42 UTC 2025 I: Downloading source for trixie/r-bioc-genefilter=1.88.0-2 Reading package lists... NOTICE: 'r-bioc-genefilter' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-genefilter.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-genefilter.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1130 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main r-bioc-genefilter 1.88.0-2 (dsc) [2229 B] Get:2 http://deb.debian.org/debian trixie/main r-bioc-genefilter 1.88.0-2 (tar) [1122 kB] Get:3 http://deb.debian.org/debian trixie/main r-bioc-genefilter 1.88.0-2 (diff) [5152 B] Fetched 1130 kB in 0s (6691 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'r-bioc-genefilter' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-genefilter.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-genefilter.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1130 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main r-bioc-genefilter 1.88.0-2 (dsc) [2229 B] Get:2 http://deb.debian.org/debian trixie/main r-bioc-genefilter 1.88.0-2 (tar) [1122 kB] Get:3 http://deb.debian.org/debian trixie/main r-bioc-genefilter 1.88.0-2 (diff) [5152 B] Fetched 1130 kB in 0s (6691 kB/s) Download complete and in download only mode ============================================================================= Building r-bioc-genefilter in trixie on armhf on virt64b now. Date: Wed Jan 22 09:21:43 PST 2025 Date UTC: Wed Jan 22 17:21:43 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Jan 22 05:21:43 -12 2025 I: pbuilder-time-stamp: 1737566503 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-genefilter_1.88.0-2.dsc] I: copying [./r-bioc-genefilter_1.88.0.orig.tar.gz] I: copying [./r-bioc-genefilter_1.88.0-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./r-bioc-genefilter_1.88.0-2.dsc: unsupported subcommand dpkg-source: info: extracting r-bioc-genefilter in r-bioc-genefilter-1.88.0 dpkg-source: info: unpacking r-bioc-genefilter_1.88.0.orig.tar.gz dpkg-source: info: unpacking r-bioc-genefilter_1.88.0-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying type_fixes I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/27730/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='4f2f2a4806614c20a368d7b306a245c8' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='27730' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.89s4KC4Q/pbuilderrc_pzU0 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.89s4KC4Q/b1 --logfile b1/build.log r-bioc-genefilter_1.88.0-2.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64b 6.1.0-30-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/27730/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-matrixgenerics (>= 1.11.1), r-bioc-annotationdbi, r-bioc-annotate, r-bioc-biobase, r-cran-survival, architecture-is-64-bit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19569 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-matrixgenerics (>= 1.11.1); however: Package r-bioc-matrixgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-annotationdbi; however: Package r-bioc-annotationdbi is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-annotate; however: Package r-bioc-annotate is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biobase; however: Package r-bioc-biobase is not installed. pbuilder-satisfydepends-dummy depends on r-cran-survival; however: Package r-cran-survival is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-arm-linux-gnueabihf{a} gfortran-arm-linux-gnueabihf{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libidn2-0{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap2{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper2{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtasn1-6{a} libtcl8.6{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} r-base-core{a} r-base-dev{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-matrixgenerics{a} r-cran-lattice{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-survival{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl linux-sysctl-defaults lynx psmisc publicsuffix r-cran-base64enc r-cran-ggplot2 r-cran-knitr r-cran-markdown r-cran-microbenchmark r-cran-r.devices r-cran-r.rsp r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 202 newly installed, 0 to remove and 0 not upgraded. Need to get 113 MB of archives. After unpacking 297 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: r-bioc-annotationdbi but it is not installable Depends: r-bioc-annotate but it is not installable Depends: architecture-is-64-bit which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-arm-linux-gnueabihf{a} gfortran-arm-linux-gnueabihf{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libidn2-0{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap2{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper2{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtasn1-6{a} libtcl8.6{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} r-base-core{a} r-base-dev{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-matrixgenerics{a} r-cran-lattice{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-survival{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl linux-sysctl-defaults lynx psmisc publicsuffix r-cran-base64enc r-cran-ggplot2 r-cran-knitr r-cran-markdown r-cran-microbenchmark r-cran-r.devices r-cran-r.rsp r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 202 newly installed, 0 to remove and 0 not upgraded. Need to get 113 MB of archives. After unpacking 297 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/27730 and its subdirectories Starting cleanup. All cleanup done. Wed Jan 22 17:22:37 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-QavcAfVU, removing. /srv/reproducible-results/rbuild-debian/r-b-build.89s4KC4Q: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Jan 22 17:22 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jan 22 17:21 b2 -rw-r--r-- 1 jenkins jenkins 2229 Jan 13 13:52 r-bioc-genefilter_1.88.0-2.dsc -rw------- 1 jenkins jenkins 3407 Jan 22 17:21 rbuildlog.4Otx2sV /srv/reproducible-results/rbuild-debian/r-b-build.89s4KC4Q/b1: total 16 -rw-r--r-- 1 jenkins jenkins 15246 Jan 22 17:22 build.log /srv/reproducible-results/rbuild-debian/r-b-build.89s4KC4Q/b2: total 0 Wed Jan 22 17:22:40 UTC 2025 I: Deleting $TMPDIR on virt64b-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jan 22 05:21:43 -12 2025 I: pbuilder-time-stamp: 1737566503 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-genefilter_1.88.0-2.dsc] I: copying [./r-bioc-genefilter_1.88.0.orig.tar.gz] I: copying [./r-bioc-genefilter_1.88.0-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./r-bioc-genefilter_1.88.0-2.dsc: unsupported subcommand dpkg-source: info: extracting r-bioc-genefilter in r-bioc-genefilter-1.88.0 dpkg-source: info: unpacking r-bioc-genefilter_1.88.0.orig.tar.gz dpkg-source: info: unpacking r-bioc-genefilter_1.88.0-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying type_fixes I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/27730/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='4f2f2a4806614c20a368d7b306a245c8' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='27730' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.89s4KC4Q/pbuilderrc_pzU0 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.89s4KC4Q/b1 --logfile b1/build.log r-bioc-genefilter_1.88.0-2.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64b 6.1.0-30-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/27730/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-matrixgenerics (>= 1.11.1), r-bioc-annotationdbi, r-bioc-annotate, r-bioc-biobase, r-cran-survival, architecture-is-64-bit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19569 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-matrixgenerics (>= 1.11.1); however: Package r-bioc-matrixgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-annotationdbi; however: Package r-bioc-annotationdbi is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-annotate; however: Package r-bioc-annotate is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biobase; however: Package r-bioc-biobase is not installed. pbuilder-satisfydepends-dummy depends on r-cran-survival; however: Package r-cran-survival is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-arm-linux-gnueabihf{a} gfortran-arm-linux-gnueabihf{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libidn2-0{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap2{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper2{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtasn1-6{a} libtcl8.6{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} r-base-core{a} r-base-dev{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-matrixgenerics{a} r-cran-lattice{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-survival{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl linux-sysctl-defaults lynx psmisc publicsuffix r-cran-base64enc r-cran-ggplot2 r-cran-knitr r-cran-markdown r-cran-microbenchmark r-cran-r.devices r-cran-r.rsp r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 202 newly installed, 0 to remove and 0 not upgraded. Need to get 113 MB of archives. After unpacking 297 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: r-bioc-annotationdbi but it is not installable Depends: r-bioc-annotate but it is not installable Depends: architecture-is-64-bit which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-arm-linux-gnueabihf{a} gfortran-arm-linux-gnueabihf{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libidn2-0{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap2{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper2{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtasn1-6{a} libtcl8.6{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} r-base-core{a} r-base-dev{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-matrixgenerics{a} r-cran-lattice{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-survival{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl linux-sysctl-defaults lynx psmisc publicsuffix r-cran-base64enc r-cran-ggplot2 r-cran-knitr r-cran-markdown r-cran-microbenchmark r-cran-r.devices r-cran-r.rsp r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 202 newly installed, 0 to remove and 0 not upgraded. Need to get 113 MB of archives. After unpacking 297 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/27730 and its subdirectories r-bioc-genefilter failed to build from source. removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/armhf/r-bioc-genefilter_1.86.0-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/armhf/r-bioc-genefilter_1.86.0-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/r-bioc-genefilter_1.86.0-1.build1.log.gz' Wed Jan 22 17:22:43 UTC 2025 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 74.2% -- replaced with stdout Wed Jan 22 17:22:43 UTC 2025 W: Downloading the build dependencies failed Wed Jan 22 17:22:43 UTC 2025 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Wed Jan 22 17:22:43 UTC 2025 W: Network problems are automatically rescheduled after some hours. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-01-22 17:22:44] INFO: Starting at 2025-01-22 17:22:44.264951 [2025-01-22 17:22:44] INFO: Generating the pages of 1 package(s) [2025-01-22 17:22:44] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/r-bioc-genefilter_1.88.0-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/r-bioc-genefilter_1.88.0-2.diff.gz is missing [2025-01-22 17:22:44] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/r-bioc-genefilter_1.88.0-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/r-bioc-genefilter_1.88.0-2.diff.gz is missing [2025-01-22 17:22:44] CRITICAL: buildinfo not detected at /var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/amd64/r-bioc-genefilter_1.88.0-2_amd64.buildinfo [2025-01-22 17:22:44] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/r-bioc-genefilter_1.88.0-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/r-bioc-genefilter_1.88.0-2.diff.gz is missing [2025-01-22 17:22:44] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/armhf/r-bioc-genefilter didn't produce a buildlog, even though it has been built. [2025-01-22 17:22:44] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/r-bioc-genefilter_1.88.0-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/r-bioc-genefilter_1.88.0-2.diff.gz is missing [2025-01-22 17:22:44] INFO: Finished at 2025-01-22 17:22:44.758058, took: 0:00:00.493114 Wed Jan 22 17:22:44 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/armhf/r-bioc-genefilter.html Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/armhf/r-bioc-genefilter_1.88.0-2.rbuild.log: 69.9% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/armhf/r-bioc-genefilter_1.88.0-2.rbuild.log.gz [2025-01-22 17:22:45] INFO: Starting at 2025-01-22 17:22:45.138100 [2025-01-22 17:22:45] INFO: Generating the pages of 1 package(s) [2025-01-22 17:22:45] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/r-bioc-genefilter_1.88.0-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/r-bioc-genefilter_1.88.0-2.diff.gz is missing [2025-01-22 17:22:45] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/r-bioc-genefilter_1.88.0-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/r-bioc-genefilter_1.88.0-2.diff.gz is missing [2025-01-22 17:22:45] CRITICAL: buildinfo not detected at /var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/amd64/r-bioc-genefilter_1.88.0-2_amd64.buildinfo [2025-01-22 17:22:45] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/r-bioc-genefilter_1.88.0-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/r-bioc-genefilter_1.88.0-2.diff.gz is missing [2025-01-22 17:22:45] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/r-bioc-genefilter_1.88.0-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/r-bioc-genefilter_1.88.0-2.diff.gz is missing [2025-01-22 17:22:45] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/r-bioc-genefilter_1.88.0-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/r-bioc-genefilter_1.88.0-2.diff.gz is missing [2025-01-22 17:22:45] INFO: Finished at 2025-01-22 17:22:45.630888, took: 0:00:00.492795 All cleanup done. Wed Jan 22 17:22:45 UTC 2025 - total duration: 0h 1m 31s. Wed Jan 22 17:22:45 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-BAVcS4In, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1min 33.673s CPU time consumed: 4.955s