Running as unit: rb-build-armhf_8-11687.service ==================================================================================== Mon Nov 25 17:31:49 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_armhf_8) on jenkins, called using "virt64a-armhf-rb virt32c-armhf-rb" as arguments. Mon Nov 25 17:31:49 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-ZkMinmiL" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Nov 25 17:31:49 UTC 2024 - checking /var/lib/jenkins/offline_nodes if virt64a-armhf-rb.debian.net is marked as down. Mon Nov 25 17:31:49 UTC 2024 - checking via ssh if virt64a-armhf-rb.debian.net is up. removed '/tmp/read-only-fs-test-LVcAVY' Mon Nov 25 17:31:52 UTC 2024 - checking /var/lib/jenkins/offline_nodes if virt32c-armhf-rb.debian.net is marked as down. Mon Nov 25 17:31:52 UTC 2024 - checking via ssh if virt32c-armhf-rb.debian.net is up. removed '/tmp/read-only-fs-test-s1p42U' ok, let's check if python-pdbfixer is building anywhere yet… ok, python-pdbfixer is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of python-pdbfixer in unstable on armhf on jenkins now. 1st build will be done on virt64a-armhf-rb.debian.net. 2nd build will be done on virt32c-armhf-rb.debian.net. ============================================================================= Mon Nov 25 17:32:19 UTC 2024 I: starting to build python-pdbfixer/unstable/armhf on jenkins on '2024-11-25 17:31' Mon Nov 25 17:32:19 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_8/11687/console.log 1732555939 armhf unstable python-pdbfixer Mon Nov 25 17:32:19 UTC 2024 I: Downloading source for unstable/python-pdbfixer=1.9-4 --2024-11-25 17:32:19-- http://deb.debian.org/debian/pool/main/p/python-pdbfixer/python-pdbfixer_1.9-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2196 (2.1K) [text/prs.lines.tag] Saving to: ‘python-pdbfixer_1.9-4.dsc’ 0K .. 100% 108M=0s 2024-11-25 17:32:19 (108 MB/s) - ‘python-pdbfixer_1.9-4.dsc’ saved [2196/2196] --2024-11-25 17:32:19-- http://deb.debian.org/debian/pool/main/p/python-pdbfixer/python-pdbfixer_1.9-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2196 (2.1K) [text/prs.lines.tag] Saving to: ‘python-pdbfixer_1.9-4.dsc’ 0K .. 100% 108M=0s 2024-11-25 17:32:19 (108 MB/s) - ‘python-pdbfixer_1.9-4.dsc’ saved [2196/2196] Mon Nov 25 17:32:19 UTC 2024 I: python-pdbfixer_1.9-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-pdbfixer Binary: python3-pdbfixer Architecture: all Version: 1.9-4 Maintainer: Debian Python Team Uploaders: Andrius Merkys , Homepage: https://github.com/openmm/pdbfixer Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/python-team/packages/python-pdbfixer Vcs-Git: https://salsa.debian.org/python-team/packages/python-pdbfixer.git Testsuite: autopkgtest Testsuite-Triggers: python3-pytest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, help2man, python3, python3-legacy-cgi, python3-openmm, python3-pytest , python3-setuptools, rename Package-List: python3-pdbfixer deb python optional arch=all Checksums-Sha1: 4c91ec5a75bb631f5f90db425c4f609aa61eb75e 648085 python-pdbfixer_1.9.orig.tar.gz bce855d281e398255ae822da6efefdb1a9d6375c 3032 python-pdbfixer_1.9-4.debian.tar.xz Checksums-Sha256: 88b9a77e50655f89d0eb2075093773e82c27a4cef842cb7d735c877b20cd39fb 648085 python-pdbfixer_1.9.orig.tar.gz 20e34a602494ab4b53d05330df4c3d8970fd5d4656492397f5711ef6f17ebd8a 3032 python-pdbfixer_1.9-4.debian.tar.xz Files: 48fc0c9c12eda19e786acbc9e62433f5 648085 python-pdbfixer_1.9.orig.tar.gz afcd8687f2c8a3c429f9bc025cfdf752 3032 python-pdbfixer_1.9-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmc4pUkRHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBqb8A//QrBirRhPMEhSFlqTii5kcGi/PPXdVdeX qw/s0vjqmwEcqi6TNSZN1szl+OqN2wgBWGdsa2n8t0uVK7FMjAyvZTlCrF23Bg1W 4oqSivwDhAiEtPD/jwGqjx3RVmXjV/NNpTCElyu9zUgtc00HNww5jI2tl1BKTG3Y 7p51Id7b6eNHJ9/zfz/5GloIq6zMa9wtu/51Do9NqFeUMcanU5DwSbNFyWlZmd+H bxRgoTbQR9XvjMuOKhXtsoE4n3KXTHyr8eoX9J0X0LoEZPbQ6RVBqQI98AmV3qiK Y7hc0C5lqD+lN9NIgLdAyRDlux7U6eQ3dZ9MX46wwoY4Ni3fdSsI2s1os4i3MZl0 PrOLDx7bFqnhF5YNzGpsyLHPgCYtq0sogGSCuxJGb1+lKkPmTnsYj5nwI2Yz7qCK Urwr1dzTmmd/e9aUTCz+jg2XOSJb+Bhd1Y0F3Px4Wp7GLZyP4kQOXztneWm3t8Wf c7ie/am6xqJaveFwf0nS8TEyxcItMqejL1i6O47fPf/pQk4ruS0DspqQ2PE7oA6+ PcT8MyzzOxJwGNx56FHzGEcj0aeHmhNUqO1XiTL7RYrWXlAYpQA+3uP6Q3EIAdx6 s7A9F9TtGyMYHMcOMv67V4zQhrwGtinylUTZpkxQm59kn6QazzzKw5ebqOHKenq3 wfW8aPIz5nA= =2tt0 -----END PGP SIGNATURE----- Mon Nov 25 17:32:19 UTC 2024 I: Checking whether the package is not for us Mon Nov 25 17:32:19 UTC 2024 I: Starting 1st build on remote node virt64a-armhf-rb.debian.net. Mon Nov 25 17:32:19 UTC 2024 I: Preparing to do remote build '1' on virt64a-armhf-rb.debian.net. Mon Nov 25 17:32:19 UTC 2024 - checking /var/lib/jenkins/offline_nodes if virt64a-armhf-rb.debian.net is marked as down. Mon Nov 25 17:32:19 UTC 2024 - checking via ssh if virt64a-armhf-rb.debian.net is up. removed '/tmp/read-only-fs-test-0Q74aR' ==================================================================================== Mon Nov 25 17:32:27 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on virt64a, called using "1 python-pdbfixer unstable /srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br 1.9-4" as arguments. Mon Nov 25 17:32:27 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-7YfsmMwP" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Nov 25 17:32:27 UTC 2024 I: Downloading source for unstable/python-pdbfixer=1.9-4 Reading package lists... NOTICE: 'python-pdbfixer' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/python-team/packages/python-pdbfixer.git Please use: git clone https://salsa.debian.org/python-team/packages/python-pdbfixer.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 653 kB of source archives. Get:1 http://cdn-fastly.deb.debian.org/debian unstable/main python-pdbfixer 1.9-4 (dsc) [2196 B] Get:2 http://cdn-fastly.deb.debian.org/debian unstable/main python-pdbfixer 1.9-4 (tar) [648 kB] Get:3 http://cdn-fastly.deb.debian.org/debian unstable/main python-pdbfixer 1.9-4 (diff) [3032 B] Fetched 653 kB in 2s (413 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'python-pdbfixer' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/python-team/packages/python-pdbfixer.git Please use: git clone https://salsa.debian.org/python-team/packages/python-pdbfixer.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 653 kB of source archives. Get:1 http://cdn-fastly.deb.debian.org/debian unstable/main python-pdbfixer 1.9-4 (dsc) [2196 B] Get:2 http://cdn-fastly.deb.debian.org/debian unstable/main python-pdbfixer 1.9-4 (tar) [648 kB] Get:3 http://cdn-fastly.deb.debian.org/debian unstable/main python-pdbfixer 1.9-4 (diff) [3032 B] Fetched 653 kB in 2s (413 kB/s) Download complete and in download only mode ============================================================================= Building python-pdbfixer in unstable on armhf on virt64a now. Date: Mon Nov 25 17:32:29 UTC 2024 Date UTC: Mon Nov 25 17:32:29 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Mon Nov 25 05:32:29 -12 2024 I: pbuilder-time-stamp: 1732555949 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pdbfixer_1.9-4.dsc] I: copying [./python-pdbfixer_1.9.orig.tar.gz] I: copying [./python-pdbfixer_1.9-4.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Nov 16 13:59:37 2024 gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A gpgv: issuer "tchet@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-pdbfixer_1.9-4.dsc: no acceptable signature found dpkg-source: info: extracting python-pdbfixer in python-pdbfixer-1.9 dpkg-source: info: unpacking python-pdbfixer_1.9.orig.tar.gz dpkg-source: info: unpacking python-pdbfixer_1.9-4.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/17244/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='06268da6c50641f8b67feccb75d2690f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='17244' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br/pbuilderrc_wHuD --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br/b1 --logfile b1/build.log python-pdbfixer_1.9-4.dsc' SUDO_GID='114' SUDO_UID='108' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64a 6.1.0-28-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/17244/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, help2man, python3, python3-legacy-cgi, python3-openmm, python3-pytest, python3-setuptools, rename dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19685 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-legacy-cgi; however: Package python3-legacy-cgi is not installed. pbuilder-satisfydepends-dummy depends on python3-openmm; however: Package python3-openmm is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on rename; however: Package rename is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libopenmm-dev{a} libopenmm8.1{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-legacy-cgi{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-openmm{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pytest{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} rename{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-pygments wget 0 packages upgraded, 78 newly installed, 0 to remove and 0 not upgraded. Need to get 41.2 MB of archives. After unpacking 219 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main armhf liblocale-gettext-perl armhf 1.07-7+b1 [14.7 kB] Get: 2 http://deb.debian.org/debian unstable/main armhf libpython3.12-minimal armhf 3.12.7-3 [800 kB] Get: 3 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.6.4-1 [83.5 kB] Get: 4 http://deb.debian.org/debian unstable/main armhf python3.12-minimal armhf 3.12.7-3 [1808 kB] Get: 5 http://deb.debian.org/debian unstable/main armhf python3-minimal armhf 3.12.7-1 [26.8 kB] Get: 6 http://deb.debian.org/debian unstable/main armhf media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian unstable/main armhf netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian unstable/main armhf tzdata all 2024b-3 [255 kB] Get: 9 http://deb.debian.org/debian unstable/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB] Get: 10 http://deb.debian.org/debian unstable/main armhf libcom-err2 armhf 1.47.1-1+b1 [22.3 kB] Get: 11 http://deb.debian.org/debian unstable/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB] Get: 12 http://deb.debian.org/debian unstable/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B] Get: 13 http://deb.debian.org/debian unstable/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB] Get: 14 http://deb.debian.org/debian unstable/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB] Get: 15 http://deb.debian.org/debian unstable/main armhf libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian unstable/main armhf libtirpc3t64 armhf 1.3.4+ds-1.3+b1 [71.3 kB] Get: 17 http://deb.debian.org/debian unstable/main armhf libnsl2 armhf 1.3.0-3+b3 [35.0 kB] Get: 18 http://deb.debian.org/debian unstable/main armhf readline-common all 8.2-5 [69.3 kB] Get: 19 http://deb.debian.org/debian unstable/main armhf libreadline8t64 armhf 8.2-5 [146 kB] Get: 20 http://deb.debian.org/debian unstable/main armhf libpython3.12-stdlib armhf 3.12.7-3 [1819 kB] Get: 21 http://deb.debian.org/debian unstable/main armhf python3.12 armhf 3.12.7-3 [671 kB] Get: 22 http://deb.debian.org/debian unstable/main armhf libpython3-stdlib armhf 3.12.7-1 [9712 B] Get: 23 http://deb.debian.org/debian unstable/main armhf python3 armhf 3.12.7-1 [27.8 kB] Get: 24 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 25 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 26 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 27 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 28 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.22.5-2 [195 kB] Get: 29 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 30 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-5 [1091 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40.2-11 [83.6 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 33 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 34 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 35 http://deb.debian.org/debian unstable/main armhf autoconf all 2.72-3 [493 kB] Get: 36 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 37 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 38 http://deb.debian.org/debian unstable/main armhf autopoint all 0.22.5-2 [723 kB] Get: 39 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.20 [89.7 kB] Get: 40 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-8 [517 kB] Get: 41 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 42 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 43 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 44 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 45 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 46 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 47 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-5+b1 [9088 kB] Get: 48 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 49 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.22.5-2 [1485 kB] Get: 50 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 51 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian unstable/main armhf debhelper all 13.20 [915 kB] Get: 53 http://deb.debian.org/debian unstable/main armhf python3-autocommand all 2.2.2-3 [13.6 kB] Get: 54 http://deb.debian.org/debian unstable/main armhf python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 55 http://deb.debian.org/debian unstable/main armhf python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 56 http://deb.debian.org/debian unstable/main armhf python3-typeguard all 4.4.1-1 [37.0 kB] Get: 57 http://deb.debian.org/debian unstable/main armhf python3-inflect all 7.3.1-2 [32.4 kB] Get: 58 http://deb.debian.org/debian unstable/main armhf python3-jaraco.context all 6.0.0-1 [7984 B] Get: 59 http://deb.debian.org/debian unstable/main armhf python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 60 http://deb.debian.org/debian unstable/main armhf python3-pkg-resources all 75.2.0-1 [213 kB] Get: 61 http://deb.debian.org/debian unstable/main armhf python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 62 http://deb.debian.org/debian unstable/main armhf python3-zipp all 3.21.0-1 [10.6 kB] Get: 63 http://deb.debian.org/debian unstable/main armhf python3-setuptools all 75.2.0-1 [731 kB] Get: 64 http://deb.debian.org/debian unstable/main armhf dh-python all 6.20241024 [109 kB] Get: 65 http://deb.debian.org/debian unstable/main armhf help2man armhf 1.49.3 [198 kB] Get: 66 http://deb.debian.org/debian unstable/main armhf libblas3 armhf 3.12.0-4 [111 kB] Get: 67 http://deb.debian.org/debian unstable/main armhf libgfortran5 armhf 14.2.0-8 [263 kB] Get: 68 http://deb.debian.org/debian unstable/main armhf liblapack3 armhf 3.12.0-4 [1828 kB] Get: 69 http://deb.debian.org/debian unstable/main armhf libopenmm8.1 armhf 8.1.2+dfsg-1+b1 [882 kB] Get: 70 http://deb.debian.org/debian unstable/main armhf libopenmm-dev armhf 8.1.2+dfsg-1+b1 [327 kB] Get: 71 http://deb.debian.org/debian unstable/main armhf python3-iniconfig all 1.1.1-2 [6396 B] Get: 72 http://deb.debian.org/debian unstable/main armhf python3-legacy-cgi all 2.6.1-2 [16.1 kB] Get: 73 http://deb.debian.org/debian unstable/main armhf python3-numpy armhf 1:1.26.4+ds-12 [3676 kB] Get: 74 http://deb.debian.org/debian unstable/main armhf python3-openmm armhf 8.1.2+dfsg-1+b1 [6720 kB] Get: 75 http://deb.debian.org/debian unstable/main armhf python3-packaging all 24.2-1 [55.3 kB] Get: 76 http://deb.debian.org/debian unstable/main armhf python3-pluggy all 1.5.0-1 [26.9 kB] Get: 77 http://deb.debian.org/debian unstable/main armhf python3-pytest all 8.3.3-1 [249 kB] Get: 78 http://deb.debian.org/debian unstable/main armhf rename all 2.02-1 [21.8 kB] Fetched 41.2 MB in 2s (17.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19685 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-7+b1_armhf.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libpython3.12-minimal:armhf. Preparing to unpack .../libpython3.12-minimal_3.12.7-3_armhf.deb ... Unpacking libpython3.12-minimal:armhf (3.12.7-3) ... Selecting previously unselected package libexpat1:armhf. 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_armhf.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../04-libkrb5support0_1.21.3-3_armhf.deb ... Unpacking libkrb5support0:armhf (1.21.3-3) ... Selecting previously unselected package libcom-err2:armhf. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_armhf.deb ... Unpacking libcom-err2:armhf (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../06-libk5crypto3_1.21.3-3_armhf.deb ... Unpacking libk5crypto3:armhf (1.21.3-3) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../07-libkeyutils1_1.6.3-4_armhf.deb ... Unpacking libkeyutils1:armhf (1.6.3-4) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../08-libkrb5-3_1.21.3-3_armhf.deb ... Unpacking libkrb5-3:armhf (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:armhf. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:armhf. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:armhf (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:armhf. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_armhf.deb ... Unpacking libnsl2:armhf (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:armhf. Preparing to unpack .../14-libreadline8t64_8.2-5_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:armhf. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_armhf.deb ... Unpacking libpython3.12-stdlib:armhf (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_armhf.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../17-libpython3-stdlib_3.12.7-1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.12.7-1) ... Setting up python3-minimal (3.12.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21082 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.7-1_armhf.deb ... Unpacking python3 (3.12.7-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3+b1_armhf.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.22.5-2_armhf.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-5_armhf.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.40.2-11_armhf.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../09-libpipeline1_1.5.8-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.0-1_armhf.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../22-libelf1t64_0.192-4_armhf.deb ... Unpacking libelf1t64:armhf (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../24-libicu72_72.1-5+b1_armhf.deb ... Unpacking libicu72:armhf (72.1-5+b1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_armhf.deb ... Unpacking libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.22.5-2_armhf.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../30-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../31-python3-more-itertools_10.5.0-1_all.deb ... Unpacking python3-more-itertools (10.5.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../32-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../33-python3-typeguard_4.4.1-1_all.deb ... Unpacking python3-typeguard (4.4.1-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../34-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../35-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../36-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../37-python3-pkg-resources_75.2.0-1_all.deb ... Unpacking python3-pkg-resources (75.2.0-1) ... Selecting previously unselected package python3-jaraco.text. Preparing to unpack .../38-python3-jaraco.text_4.0.0-1_all.deb ... Unpacking python3-jaraco.text (4.0.0-1) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../39-python3-zipp_3.21.0-1_all.deb ... Unpacking python3-zipp (3.21.0-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../40-python3-setuptools_75.2.0-1_all.deb ... Unpacking python3-setuptools (75.2.0-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../41-dh-python_6.20241024_all.deb ... Unpacking dh-python (6.20241024) ... Selecting previously unselected package help2man. Preparing to unpack .../42-help2man_1.49.3_armhf.deb ... Unpacking help2man (1.49.3) ... Selecting previously unselected package libblas3:armhf. Preparing to unpack .../43-libblas3_3.12.0-4_armhf.deb ... Unpacking libblas3:armhf (3.12.0-4) ... Selecting previously unselected package libgfortran5:armhf. Preparing to unpack .../44-libgfortran5_14.2.0-8_armhf.deb ... Unpacking libgfortran5:armhf (14.2.0-8) ... Selecting previously unselected package liblapack3:armhf. Preparing to unpack .../45-liblapack3_3.12.0-4_armhf.deb ... Unpacking liblapack3:armhf (3.12.0-4) ... Selecting previously unselected package libopenmm8.1. Preparing to unpack .../46-libopenmm8.1_8.1.2+dfsg-1+b1_armhf.deb ... Unpacking libopenmm8.1 (8.1.2+dfsg-1+b1) ... Selecting previously unselected package libopenmm-dev. Preparing to unpack .../47-libopenmm-dev_8.1.2+dfsg-1+b1_armhf.deb ... Unpacking libopenmm-dev (8.1.2+dfsg-1+b1) ... Selecting previously unselected package python3-iniconfig. Preparing to unpack .../48-python3-iniconfig_1.1.1-2_all.deb ... Unpacking python3-iniconfig (1.1.1-2) ... Selecting previously unselected package python3-legacy-cgi. Preparing to unpack .../49-python3-legacy-cgi_2.6.1-2_all.deb ... Unpacking python3-legacy-cgi (2.6.1-2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../50-python3-numpy_1%3a1.26.4+ds-12_armhf.deb ... Unpacking python3-numpy (1:1.26.4+ds-12) ... Selecting previously unselected package python3-openmm. Preparing to unpack .../51-python3-openmm_8.1.2+dfsg-1+b1_armhf.deb ... Unpacking python3-openmm (8.1.2+dfsg-1+b1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../52-python3-packaging_24.2-1_all.deb ... Unpacking python3-packaging (24.2-1) ... Selecting previously unselected package python3-pluggy. Preparing to unpack .../53-python3-pluggy_1.5.0-1_all.deb ... Unpacking python3-pluggy (1.5.0-1) ... Selecting previously unselected package python3-pytest. Preparing to unpack .../54-python3-pytest_8.3.3-1_all.deb ... Unpacking python3-pytest (8.3.3-1) ... Selecting previously unselected package rename. Preparing to unpack .../55-rename_2.02-1_all.deb ... Unpacking rename (2.02-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:armhf (1.5.8-1) ... Setting up libkeyutils1:armhf (1.6.3-4) ... Setting up libicu72:armhf (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:armhf (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up rename (2.02-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up libcom-err2:armhf (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:armhf (0.192-4) ... Setting up libkrb5support0:armhf (1.21.3-3) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Nov 25 17:34:02 UTC 2024. Universal Time is now: Mon Nov 25 17:34:02 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libblas3:armhf (3.12.0-4) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:armhf (1.21.3-3) ... Setting up libgfortran5:armhf (14.2.0-8) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:armhf (0.0.8-1+b2) ... Setting up netbase (6.4) ... Setting up libkrb5-3:armhf (1.21.3-3) ... Setting up libopenmm8.1 (8.1.2+dfsg-1+b1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:armhf (3.12.0-4) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up libopenmm-dev (8.1.2+dfsg-1+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:armhf (1.21.3-3) ... Setting up libreadline8t64:armhf (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libtirpc3t64:armhf (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:armhf (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:armhf (3.12.7-3) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:armhf (3.12.7-1) ... Setting up python3 (3.12.7-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-packaging (24.2-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-legacy-cgi (2.6.1-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up python3-openmm (8.1.2+dfsg-1+b1) ... /usr/lib/python3/dist-packages/openmm/__init__.py:16: SyntaxWarning: invalid escape sequence '\p' os.environ['PATH'] = '%(lib)s;%(lib)s\plugins;%(path)s' % { /usr/lib/python3/dist-packages/openmm/app/gromacsgrofile.py:62: SyntaxWarning: invalid escape sequence '\.' return match('^[-+]?[0-9]*\.?[0-9]*([eEdD][-+]?[0-9]+)?$',word) /usr/lib/python3/dist-packages/openmm/app/internal/amber_file_parser.py:65: SyntaxWarning: invalid escape sequence '\(' FORMAT_RE_PATTERN=re.compile("([0-9]+)\(?([a-zA-Z]+)([0-9]+)\.?([0-9]*)\)?") /usr/lib/python3/dist-packages/openmm/app/internal/pdbstructure.py:1071: SyntaxWarning: invalid escape sequence '\.' if not re.match("pdb.%2s.\.ent\.gz" % subdir , pdb_file): /usr/lib/python3/dist-packages/openmm/app/internal/pdbstructure.py:1082: SyntaxWarning: invalid escape sequence '\.' if not re.match("pdb.%2s.\.ent\.gz" % subdir , pdb_file): /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:358: SyntaxWarning: invalid escape sequence '\S' "(?:_(.+?)[.](\S+))" "|" # _category.attribute /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:360: SyntaxWarning: invalid escape sequence '\s' "(?:['](.*?)(?:[']\s|[']$))" "|" # single quoted strings /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:361: SyntaxWarning: invalid escape sequence '\s' "(?:[\"](.*?)(?:[\"]\s|[\"]$))" "|" # double quoted strings /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:363: SyntaxWarning: invalid escape sequence '\s' "(?:\s*#.*$)" "|" # comments (dumped) /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:365: SyntaxWarning: invalid escape sequence '\S' "(\S+)" # unquoted words /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:416: SyntaxWarning: invalid escape sequence '\S' """ Tokenizer method for the mmCIF syntax file - /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:444: SyntaxWarning: invalid escape sequence '\S' "(?:_(.+?)[.](\S+))" "|" # _category.attribute /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:446: SyntaxWarning: invalid escape sequence '\s' "(?:['\"](.*?)(?:['\"]\s|['\"]$))" "|" # quoted strings /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:448: SyntaxWarning: invalid escape sequence '\s' "(?:\s*#.*$)" "|" # comments (dumped) /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:450: SyntaxWarning: invalid escape sequence '\S' "(\S+)" # unquoted words /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:347: SyntaxWarning: invalid escape sequence '\S' "(?:_(.+?)[.](\S+))" "|" # _category.attribute /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:349: SyntaxWarning: invalid escape sequence '\s' "(?:['](.*?)(?:[']\s|[']$))" "|" # single quoted strings /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:350: SyntaxWarning: invalid escape sequence '\s' "(?:[\"](.*?)(?:[\"]\s|[\"]$))" "|" # double quoted strings /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:352: SyntaxWarning: invalid escape sequence '\s' "(?:\s*#.*$)" "|" # comments (dumped) /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:354: SyntaxWarning: invalid escape sequence '\S' "(\S+)" # unquoted words /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:419: SyntaxWarning: invalid escape sequence '\S' "(?:_(.+?)[.](\S+))" "|" # _category.attribute /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:421: SyntaxWarning: invalid escape sequence '\s' "(?:['\"](.*?)(?:['\"]\s|['\"]$))" "|" # quoted strings /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:423: SyntaxWarning: invalid escape sequence '\s' "(?:\s*#.*$)" "|" # comments (dumped) /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:425: SyntaxWarning: invalid escape sequence '\S' "(\S+)" # unquoted words /usr/lib/python3/dist-packages/openmm/app/metadynamics.py:247: SyntaxWarning: invalid escape sequence '\.' pattern = re.compile('bias_(.*)_(.*)\.npy') /usr/lib/python3/dist-packages/openmm/openmm.py:1556: SyntaxWarning: invalid escape sequence '\S' match = re.search("<([^?]\S*)", inputString) Setting up dh-python (6.20241024) ... Processing triggers for libc-bin (2.40-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-pdbfixer-1.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pdbfixer_1.9-4_source.changes dpkg-buildpackage: info: source package python-pdbfixer dpkg-buildpackage: info: source version 1.9-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf dpkg-source: info: using options from python-pdbfixer-1.9/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-pdbfixer-1.9' dh_auto_clean I: pybuild base:311: python3.12 setup.py clean running clean removing '/build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it rm -rf pdbfixer.egg-info make[1]: Leaving directory '/build/reproducible-path/python-pdbfixer-1.9' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/python-pdbfixer-1.9' for TEST in test_build_and_simulate.py test_cli.py test_mutate.py; do mv pdbfixer/tests/${TEST} pdbfixer/tests/HIDE_${TEST}; done dh_auto_build I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer copying pdbfixer/__init__.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer copying pdbfixer/uiserver.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer copying pdbfixer/ui.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer copying pdbfixer/pdbfixer.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer creating /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/HIDE_test_mutate.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/test_removechains.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/__init__.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/HIDE_test_cli.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/HIDE_test_build_and_simulate.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests copying pdbfixer/soft.xml -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer creating /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/VAL.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/PRO.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/GLU.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/G.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/DA.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/ASP.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/ACE.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/NME.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/GLN.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/PHE.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/TRP.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/C.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/TYR.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/CYS.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/U.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/SER.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/LYS.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/DG.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/GLY.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/ILE.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/DC.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/HIS.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/THR.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/LEU.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/MET.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/ALA.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/DT.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/ASN.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/A.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/ARG.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates creating /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html copying pdbfixer/html/convertResidues.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html copying pdbfixer/html/header.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html copying pdbfixer/html/removeChains.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html copying pdbfixer/html/addResidues.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html copying pdbfixer/html/quit.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html copying pdbfixer/html/error.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html copying pdbfixer/html/addHydrogens.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html copying pdbfixer/html/addHeavyAtoms.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html copying pdbfixer/html/start.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html copying pdbfixer/html/saveFile.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html creating /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/data copying pdbfixer/tests/data/4JSV.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/data copying pdbfixer/tests/data/test.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/data creating /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images copying pdbfixer/images/background.jpg -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images copying pdbfixer/images/logo.png -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images copying pdbfixer/images/logo_small.png -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images copying pdbfixer/images/logo.svg -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images rename 's/HIDE_//' pdbfixer/tests/HIDE_* make[1]: Leaving directory '/build/reproducible-path/python-pdbfixer-1.9' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/python-pdbfixer-1.9' dh_auto_test -- --test-pytest I: pybuild base:311: cd /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build; python3.12 -m pytest ============================= test session starts ============================== platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 rootdir: /build/reproducible-path/python-pdbfixer-1.9 plugins: typeguard-4.4.1 collected 2 items pdbfixer/tests/test_removechains.py .. [100%] =============================== warnings summary =============================== pdbfixer/pdbfixer.py:58 /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/pdbfixer.py:58: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html from pkg_resources import resource_filename -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======================== 2 passed, 1 warning in 30.97s ========================= make[1]: Leaving directory '/build/reproducible-path/python-pdbfixer-1.9' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-pdbfixer/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py copying pdbfixer/tests/test_build_and_simulate.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/test_cli.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/test_mutate.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests running install_lib creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/VAL.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/PRO.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/GLU.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/G.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/DA.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/ASP.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/ACE.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/NME.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/GLN.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/PHE.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/TRP.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/C.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/TYR.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/CYS.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/U.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/SER.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/LYS.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/DG.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/GLY.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/ILE.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/DC.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/HIS.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/THR.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/LEU.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/MET.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/ALA.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/DT.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/ASN.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/A.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/ARG.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/convertResidues.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/header.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/removeChains.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/addResidues.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/quit.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/error.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/addHydrogens.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/addHeavyAtoms.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/start.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/saveFile.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/__init__.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/uiserver.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/test_build_and_simulate.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/test_cli.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/data copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/data/4JSV.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/data copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/data/test.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/data copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/HIDE_test_mutate.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/test_removechains.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/__init__.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/HIDE_test_cli.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/__pycache__ copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/__pycache__/test_removechains.cpython-312-pytest-8.3.3.pyc -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/__pycache__ copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/__pycache__ copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/HIDE_test_build_and_simulate.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/test_mutate.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/ui.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/__pycache__ copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/__pycache__/pdbfixer.cpython-312.pyc -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/__pycache__ copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/__pycache__ creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/images copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images/background.jpg -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/images copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images/logo.png -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/images copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images/logo_small.png -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/images copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images/logo.svg -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/images copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/soft.xml -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/pdbfixer.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/uiserver.py to uiserver.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/test_build_and_simulate.py to test_build_and_simulate.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/test_cli.py to test_cli.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/HIDE_test_mutate.py to HIDE_test_mutate.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/test_removechains.py to test_removechains.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/HIDE_test_cli.py to HIDE_test_cli.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/HIDE_test_build_and_simulate.py to HIDE_test_build_and_simulate.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/test_mutate.py to test_mutate.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/ui.py to ui.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/pdbfixer.py to pdbfixer.cpython-312.pyc running install_egg_info running egg_info creating pdbfixer.egg-info writing pdbfixer.egg-info/PKG-INFO writing dependency_links to pdbfixer.egg-info/dependency_links.txt writing entry points to pdbfixer.egg-info/entry_points.txt writing requirements to pdbfixer.egg-info/requires.txt writing top-level names to pdbfixer.egg-info/top_level.txt writing manifest file 'pdbfixer.egg-info/SOURCES.txt' reading manifest file 'pdbfixer.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'pdbfixer.egg-info/SOURCES.txt' Copying pdbfixer.egg-info to /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer-1.9.0.egg-info Skipping SOURCES.txt running install_scripts Installing pdbfixer script to /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/bin dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/python-pdbfixer-1.9' PYTHONPATH=. help2man debian/python3-pdbfixer/usr/bin/pdbfixer --no-info \ --name 'Fix problems in Protein Data Bank files' \ --version-string "1.9" > pdbfixer.1 dh_installman pdbfixer.1 make[1]: Leaving directory '/build/reproducible-path/python-pdbfixer-1.9' debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/python-pdbfixer-1.9' dh_python3 rm debian/python3-pdbfixer/usr/lib/python3/dist-packages/pdbfixer/tests/HIDE_* make[1]: Leaving directory '/build/reproducible-path/python-pdbfixer-1.9' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pdbfixer' in '../python3-pdbfixer_1.9-4_all.deb'. dpkg-genbuildinfo --build=binary -O../python-pdbfixer_1.9-4_armhf.buildinfo dpkg-genchanges --build=binary -O../python-pdbfixer_1.9-4_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from python-pdbfixer-1.9/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/17244 and its subdirectories I: Current time: Mon Nov 25 05:35:25 -12 2024 I: pbuilder-time-stamp: 1732556125 Mon Nov 25 17:35:25 UTC 2024 I: Signing ./b1/python-pdbfixer_1.9-4_armhf.buildinfo as python-pdbfixer_1.9-4_armhf.buildinfo.asc Mon Nov 25 17:35:25 UTC 2024 I: Signed ./b1/python-pdbfixer_1.9-4_armhf.buildinfo as ./b1/python-pdbfixer_1.9-4_armhf.buildinfo.asc Mon Nov 25 17:35:25 UTC 2024 - build #1 for python-pdbfixer/unstable/armhf on virt64a done. Starting cleanup. All cleanup done. Mon Nov 25 17:35:25 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-7YfsmMwP, removing. /srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 25 17:35 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 25 17:32 b2 -rw-r--r-- 1 jenkins jenkins 2196 Nov 16 14:14 python-pdbfixer_1.9-4.dsc -rw------- 1 jenkins jenkins 3349 Nov 25 17:32 rbuildlog.4TysSvA /srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br/b1: total 544 -rw-r--r-- 1 jenkins jenkins 74531 Nov 25 17:35 build.log -rw-r--r-- 1 jenkins jenkins 3032 Nov 25 17:35 python-pdbfixer_1.9-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2196 Nov 25 17:35 python-pdbfixer_1.9-4.dsc -rw-r--r-- 1 jenkins jenkins 6123 Nov 25 17:35 python-pdbfixer_1.9-4_armhf.buildinfo -rw-r--r-- 1 jenkins jenkins 7005 Nov 25 17:35 python-pdbfixer_1.9-4_armhf.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1146 Nov 25 17:35 python-pdbfixer_1.9-4_armhf.changes -rw-r--r-- 1 jenkins jenkins 1300 Nov 25 17:35 python-pdbfixer_1.9-4_source.changes -rw-r--r-- 1 jenkins jenkins 436888 Nov 25 17:35 python3-pdbfixer_1.9-4_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br/b2: total 0 Mon Nov 25 17:35:36 UTC 2024 I: Deleting $TMPDIR on virt64a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Nov 25 05:32:29 -12 2024 I: pbuilder-time-stamp: 1732555949 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pdbfixer_1.9-4.dsc] I: copying [./python-pdbfixer_1.9.orig.tar.gz] I: copying [./python-pdbfixer_1.9-4.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Nov 16 13:59:37 2024 gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A gpgv: issuer "tchet@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-pdbfixer_1.9-4.dsc: no acceptable signature found dpkg-source: info: extracting python-pdbfixer in python-pdbfixer-1.9 dpkg-source: info: unpacking python-pdbfixer_1.9.orig.tar.gz dpkg-source: info: unpacking python-pdbfixer_1.9-4.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/17244/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='06268da6c50641f8b67feccb75d2690f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='17244' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br/pbuilderrc_wHuD --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br/b1 --logfile b1/build.log python-pdbfixer_1.9-4.dsc' SUDO_GID='114' SUDO_UID='108' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64a 6.1.0-28-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/17244/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, help2man, python3, python3-legacy-cgi, python3-openmm, python3-pytest, python3-setuptools, rename dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19685 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-legacy-cgi; however: Package python3-legacy-cgi is not installed. pbuilder-satisfydepends-dummy depends on python3-openmm; however: Package python3-openmm is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on rename; however: Package rename is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libopenmm-dev{a} libopenmm8.1{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-legacy-cgi{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-openmm{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pytest{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} rename{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-pygments wget 0 packages upgraded, 78 newly installed, 0 to remove and 0 not upgraded. Need to get 41.2 MB of archives. After unpacking 219 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main armhf liblocale-gettext-perl armhf 1.07-7+b1 [14.7 kB] Get: 2 http://deb.debian.org/debian unstable/main armhf libpython3.12-minimal armhf 3.12.7-3 [800 kB] Get: 3 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.6.4-1 [83.5 kB] Get: 4 http://deb.debian.org/debian unstable/main armhf python3.12-minimal armhf 3.12.7-3 [1808 kB] Get: 5 http://deb.debian.org/debian unstable/main armhf python3-minimal armhf 3.12.7-1 [26.8 kB] Get: 6 http://deb.debian.org/debian unstable/main armhf media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian unstable/main armhf netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian unstable/main armhf tzdata all 2024b-3 [255 kB] Get: 9 http://deb.debian.org/debian unstable/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB] Get: 10 http://deb.debian.org/debian unstable/main armhf libcom-err2 armhf 1.47.1-1+b1 [22.3 kB] Get: 11 http://deb.debian.org/debian unstable/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB] Get: 12 http://deb.debian.org/debian unstable/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B] Get: 13 http://deb.debian.org/debian unstable/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB] Get: 14 http://deb.debian.org/debian unstable/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB] Get: 15 http://deb.debian.org/debian unstable/main armhf libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian unstable/main armhf libtirpc3t64 armhf 1.3.4+ds-1.3+b1 [71.3 kB] Get: 17 http://deb.debian.org/debian unstable/main armhf libnsl2 armhf 1.3.0-3+b3 [35.0 kB] Get: 18 http://deb.debian.org/debian unstable/main armhf readline-common all 8.2-5 [69.3 kB] Get: 19 http://deb.debian.org/debian unstable/main armhf libreadline8t64 armhf 8.2-5 [146 kB] Get: 20 http://deb.debian.org/debian unstable/main armhf libpython3.12-stdlib armhf 3.12.7-3 [1819 kB] Get: 21 http://deb.debian.org/debian unstable/main armhf python3.12 armhf 3.12.7-3 [671 kB] Get: 22 http://deb.debian.org/debian unstable/main armhf libpython3-stdlib armhf 3.12.7-1 [9712 B] Get: 23 http://deb.debian.org/debian unstable/main armhf python3 armhf 3.12.7-1 [27.8 kB] Get: 24 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 25 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 26 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 27 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 28 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.22.5-2 [195 kB] Get: 29 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 30 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-5 [1091 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40.2-11 [83.6 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 33 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 34 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 35 http://deb.debian.org/debian unstable/main armhf autoconf all 2.72-3 [493 kB] Get: 36 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 37 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 38 http://deb.debian.org/debian unstable/main armhf autopoint all 0.22.5-2 [723 kB] Get: 39 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.20 [89.7 kB] Get: 40 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-8 [517 kB] Get: 41 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 42 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 43 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 44 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 45 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 46 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 47 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-5+b1 [9088 kB] Get: 48 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 49 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.22.5-2 [1485 kB] Get: 50 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 51 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian unstable/main armhf debhelper all 13.20 [915 kB] Get: 53 http://deb.debian.org/debian unstable/main armhf python3-autocommand all 2.2.2-3 [13.6 kB] Get: 54 http://deb.debian.org/debian unstable/main armhf python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 55 http://deb.debian.org/debian unstable/main armhf python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 56 http://deb.debian.org/debian unstable/main armhf python3-typeguard all 4.4.1-1 [37.0 kB] Get: 57 http://deb.debian.org/debian unstable/main armhf python3-inflect all 7.3.1-2 [32.4 kB] Get: 58 http://deb.debian.org/debian unstable/main armhf python3-jaraco.context all 6.0.0-1 [7984 B] Get: 59 http://deb.debian.org/debian unstable/main armhf python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 60 http://deb.debian.org/debian unstable/main armhf python3-pkg-resources all 75.2.0-1 [213 kB] Get: 61 http://deb.debian.org/debian unstable/main armhf python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 62 http://deb.debian.org/debian unstable/main armhf python3-zipp all 3.21.0-1 [10.6 kB] Get: 63 http://deb.debian.org/debian unstable/main armhf python3-setuptools all 75.2.0-1 [731 kB] Get: 64 http://deb.debian.org/debian unstable/main armhf dh-python all 6.20241024 [109 kB] Get: 65 http://deb.debian.org/debian unstable/main armhf help2man armhf 1.49.3 [198 kB] Get: 66 http://deb.debian.org/debian unstable/main armhf libblas3 armhf 3.12.0-4 [111 kB] Get: 67 http://deb.debian.org/debian unstable/main armhf libgfortran5 armhf 14.2.0-8 [263 kB] Get: 68 http://deb.debian.org/debian unstable/main armhf liblapack3 armhf 3.12.0-4 [1828 kB] Get: 69 http://deb.debian.org/debian unstable/main armhf libopenmm8.1 armhf 8.1.2+dfsg-1+b1 [882 kB] Get: 70 http://deb.debian.org/debian unstable/main armhf libopenmm-dev armhf 8.1.2+dfsg-1+b1 [327 kB] Get: 71 http://deb.debian.org/debian unstable/main armhf python3-iniconfig all 1.1.1-2 [6396 B] Get: 72 http://deb.debian.org/debian unstable/main armhf python3-legacy-cgi all 2.6.1-2 [16.1 kB] Get: 73 http://deb.debian.org/debian unstable/main armhf python3-numpy armhf 1:1.26.4+ds-12 [3676 kB] Get: 74 http://deb.debian.org/debian unstable/main armhf python3-openmm armhf 8.1.2+dfsg-1+b1 [6720 kB] Get: 75 http://deb.debian.org/debian unstable/main armhf python3-packaging all 24.2-1 [55.3 kB] Get: 76 http://deb.debian.org/debian unstable/main armhf python3-pluggy all 1.5.0-1 [26.9 kB] Get: 77 http://deb.debian.org/debian unstable/main armhf python3-pytest all 8.3.3-1 [249 kB] Get: 78 http://deb.debian.org/debian unstable/main armhf rename all 2.02-1 [21.8 kB] Fetched 41.2 MB in 2s (17.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19685 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-7+b1_armhf.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libpython3.12-minimal:armhf. Preparing to unpack .../libpython3.12-minimal_3.12.7-3_armhf.deb ... Unpacking libpython3.12-minimal:armhf (3.12.7-3) ... Selecting previously unselected package libexpat1:armhf. 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_armhf.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../04-libkrb5support0_1.21.3-3_armhf.deb ... Unpacking libkrb5support0:armhf (1.21.3-3) ... Selecting previously unselected package libcom-err2:armhf. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_armhf.deb ... Unpacking libcom-err2:armhf (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../06-libk5crypto3_1.21.3-3_armhf.deb ... Unpacking libk5crypto3:armhf (1.21.3-3) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../07-libkeyutils1_1.6.3-4_armhf.deb ... Unpacking libkeyutils1:armhf (1.6.3-4) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../08-libkrb5-3_1.21.3-3_armhf.deb ... Unpacking libkrb5-3:armhf (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:armhf. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:armhf. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:armhf (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:armhf. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_armhf.deb ... Unpacking libnsl2:armhf (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:armhf. Preparing to unpack .../14-libreadline8t64_8.2-5_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:armhf. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_armhf.deb ... Unpacking libpython3.12-stdlib:armhf (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_armhf.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../17-libpython3-stdlib_3.12.7-1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.12.7-1) ... Setting up python3-minimal (3.12.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21082 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.7-1_armhf.deb ... Unpacking python3 (3.12.7-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3+b1_armhf.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.22.5-2_armhf.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-5_armhf.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.40.2-11_armhf.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../09-libpipeline1_1.5.8-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.0-1_armhf.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../22-libelf1t64_0.192-4_armhf.deb ... Unpacking libelf1t64:armhf (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../24-libicu72_72.1-5+b1_armhf.deb ... Unpacking libicu72:armhf (72.1-5+b1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_armhf.deb ... Unpacking libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.22.5-2_armhf.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../30-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../31-python3-more-itertools_10.5.0-1_all.deb ... Unpacking python3-more-itertools (10.5.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../32-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../33-python3-typeguard_4.4.1-1_all.deb ... Unpacking python3-typeguard (4.4.1-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../34-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../35-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../36-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../37-python3-pkg-resources_75.2.0-1_all.deb ... Unpacking python3-pkg-resources (75.2.0-1) ... Selecting previously unselected package python3-jaraco.text. Preparing to unpack .../38-python3-jaraco.text_4.0.0-1_all.deb ... Unpacking python3-jaraco.text (4.0.0-1) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../39-python3-zipp_3.21.0-1_all.deb ... Unpacking python3-zipp (3.21.0-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../40-python3-setuptools_75.2.0-1_all.deb ... Unpacking python3-setuptools (75.2.0-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../41-dh-python_6.20241024_all.deb ... Unpacking dh-python (6.20241024) ... Selecting previously unselected package help2man. Preparing to unpack .../42-help2man_1.49.3_armhf.deb ... Unpacking help2man (1.49.3) ... Selecting previously unselected package libblas3:armhf. Preparing to unpack .../43-libblas3_3.12.0-4_armhf.deb ... Unpacking libblas3:armhf (3.12.0-4) ... Selecting previously unselected package libgfortran5:armhf. Preparing to unpack .../44-libgfortran5_14.2.0-8_armhf.deb ... Unpacking libgfortran5:armhf (14.2.0-8) ... Selecting previously unselected package liblapack3:armhf. Preparing to unpack .../45-liblapack3_3.12.0-4_armhf.deb ... Unpacking liblapack3:armhf (3.12.0-4) ... Selecting previously unselected package libopenmm8.1. Preparing to unpack .../46-libopenmm8.1_8.1.2+dfsg-1+b1_armhf.deb ... Unpacking libopenmm8.1 (8.1.2+dfsg-1+b1) ... Selecting previously unselected package libopenmm-dev. Preparing to unpack .../47-libopenmm-dev_8.1.2+dfsg-1+b1_armhf.deb ... Unpacking libopenmm-dev (8.1.2+dfsg-1+b1) ... Selecting previously unselected package python3-iniconfig. Preparing to unpack .../48-python3-iniconfig_1.1.1-2_all.deb ... Unpacking python3-iniconfig (1.1.1-2) ... Selecting previously unselected package python3-legacy-cgi. Preparing to unpack .../49-python3-legacy-cgi_2.6.1-2_all.deb ... Unpacking python3-legacy-cgi (2.6.1-2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../50-python3-numpy_1%3a1.26.4+ds-12_armhf.deb ... Unpacking python3-numpy (1:1.26.4+ds-12) ... Selecting previously unselected package python3-openmm. Preparing to unpack .../51-python3-openmm_8.1.2+dfsg-1+b1_armhf.deb ... Unpacking python3-openmm (8.1.2+dfsg-1+b1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../52-python3-packaging_24.2-1_all.deb ... Unpacking python3-packaging (24.2-1) ... Selecting previously unselected package python3-pluggy. Preparing to unpack .../53-python3-pluggy_1.5.0-1_all.deb ... Unpacking python3-pluggy (1.5.0-1) ... Selecting previously unselected package python3-pytest. Preparing to unpack .../54-python3-pytest_8.3.3-1_all.deb ... Unpacking python3-pytest (8.3.3-1) ... Selecting previously unselected package rename. Preparing to unpack .../55-rename_2.02-1_all.deb ... Unpacking rename (2.02-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:armhf (1.5.8-1) ... Setting up libkeyutils1:armhf (1.6.3-4) ... Setting up libicu72:armhf (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:armhf (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up rename (2.02-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up libcom-err2:armhf (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:armhf (0.192-4) ... Setting up libkrb5support0:armhf (1.21.3-3) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Nov 25 17:34:02 UTC 2024. Universal Time is now: Mon Nov 25 17:34:02 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libblas3:armhf (3.12.0-4) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:armhf (1.21.3-3) ... Setting up libgfortran5:armhf (14.2.0-8) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:armhf (0.0.8-1+b2) ... Setting up netbase (6.4) ... Setting up libkrb5-3:armhf (1.21.3-3) ... Setting up libopenmm8.1 (8.1.2+dfsg-1+b1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:armhf (3.12.0-4) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up libopenmm-dev (8.1.2+dfsg-1+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:armhf (1.21.3-3) ... Setting up libreadline8t64:armhf (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libtirpc3t64:armhf (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:armhf (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:armhf (3.12.7-3) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:armhf (3.12.7-1) ... Setting up python3 (3.12.7-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-packaging (24.2-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-legacy-cgi (2.6.1-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up python3-openmm (8.1.2+dfsg-1+b1) ... /usr/lib/python3/dist-packages/openmm/__init__.py:16: SyntaxWarning: invalid escape sequence '\p' os.environ['PATH'] = '%(lib)s;%(lib)s\plugins;%(path)s' % { /usr/lib/python3/dist-packages/openmm/app/gromacsgrofile.py:62: SyntaxWarning: invalid escape sequence '\.' return match('^[-+]?[0-9]*\.?[0-9]*([eEdD][-+]?[0-9]+)?$',word) /usr/lib/python3/dist-packages/openmm/app/internal/amber_file_parser.py:65: SyntaxWarning: invalid escape sequence '\(' FORMAT_RE_PATTERN=re.compile("([0-9]+)\(?([a-zA-Z]+)([0-9]+)\.?([0-9]*)\)?") /usr/lib/python3/dist-packages/openmm/app/internal/pdbstructure.py:1071: SyntaxWarning: invalid escape sequence '\.' if not re.match("pdb.%2s.\.ent\.gz" % subdir , pdb_file): /usr/lib/python3/dist-packages/openmm/app/internal/pdbstructure.py:1082: SyntaxWarning: invalid escape sequence '\.' if not re.match("pdb.%2s.\.ent\.gz" % subdir , pdb_file): /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:358: SyntaxWarning: invalid escape sequence '\S' "(?:_(.+?)[.](\S+))" "|" # _category.attribute /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:360: SyntaxWarning: invalid escape sequence '\s' "(?:['](.*?)(?:[']\s|[']$))" "|" # single quoted strings /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:361: SyntaxWarning: invalid escape sequence '\s' "(?:[\"](.*?)(?:[\"]\s|[\"]$))" "|" # double quoted strings /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:363: SyntaxWarning: invalid escape sequence '\s' "(?:\s*#.*$)" "|" # comments (dumped) /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:365: SyntaxWarning: invalid escape sequence '\S' "(\S+)" # unquoted words /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:416: SyntaxWarning: invalid escape sequence '\S' """ Tokenizer method for the mmCIF syntax file - /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:444: SyntaxWarning: invalid escape sequence '\S' "(?:_(.+?)[.](\S+))" "|" # _category.attribute /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:446: SyntaxWarning: invalid escape sequence '\s' "(?:['\"](.*?)(?:['\"]\s|['\"]$))" "|" # quoted strings /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:448: SyntaxWarning: invalid escape sequence '\s' "(?:\s*#.*$)" "|" # comments (dumped) /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:450: SyntaxWarning: invalid escape sequence '\S' "(\S+)" # unquoted words /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:347: SyntaxWarning: invalid escape sequence '\S' "(?:_(.+?)[.](\S+))" "|" # _category.attribute /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:349: SyntaxWarning: invalid escape sequence '\s' "(?:['](.*?)(?:[']\s|[']$))" "|" # single quoted strings /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:350: SyntaxWarning: invalid escape sequence '\s' "(?:[\"](.*?)(?:[\"]\s|[\"]$))" "|" # double quoted strings /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:352: SyntaxWarning: invalid escape sequence '\s' "(?:\s*#.*$)" "|" # comments (dumped) /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:354: SyntaxWarning: invalid escape sequence '\S' "(\S+)" # unquoted words /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:419: SyntaxWarning: invalid escape sequence '\S' "(?:_(.+?)[.](\S+))" "|" # _category.attribute /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:421: SyntaxWarning: invalid escape sequence '\s' "(?:['\"](.*?)(?:['\"]\s|['\"]$))" "|" # quoted strings /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:423: SyntaxWarning: invalid escape sequence '\s' "(?:\s*#.*$)" "|" # comments (dumped) /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:425: SyntaxWarning: invalid escape sequence '\S' "(\S+)" # unquoted words /usr/lib/python3/dist-packages/openmm/app/metadynamics.py:247: SyntaxWarning: invalid escape sequence '\.' pattern = re.compile('bias_(.*)_(.*)\.npy') /usr/lib/python3/dist-packages/openmm/openmm.py:1556: SyntaxWarning: invalid escape sequence '\S' match = re.search("<([^?]\S*)", inputString) Setting up dh-python (6.20241024) ... Processing triggers for libc-bin (2.40-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-pdbfixer-1.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pdbfixer_1.9-4_source.changes dpkg-buildpackage: info: source package python-pdbfixer dpkg-buildpackage: info: source version 1.9-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf dpkg-source: info: using options from python-pdbfixer-1.9/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-pdbfixer-1.9' dh_auto_clean I: pybuild base:311: python3.12 setup.py clean running clean removing '/build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it rm -rf pdbfixer.egg-info make[1]: Leaving directory '/build/reproducible-path/python-pdbfixer-1.9' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/python-pdbfixer-1.9' for TEST in test_build_and_simulate.py test_cli.py test_mutate.py; do mv pdbfixer/tests/${TEST} pdbfixer/tests/HIDE_${TEST}; done dh_auto_build I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer copying pdbfixer/__init__.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer copying pdbfixer/uiserver.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer copying pdbfixer/ui.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer copying pdbfixer/pdbfixer.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer creating /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/HIDE_test_mutate.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/test_removechains.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/__init__.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/HIDE_test_cli.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/HIDE_test_build_and_simulate.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests copying pdbfixer/soft.xml -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer creating /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/VAL.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/PRO.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/GLU.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/G.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/DA.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/ASP.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/ACE.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/NME.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/GLN.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/PHE.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/TRP.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/C.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/TYR.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/CYS.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/U.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/SER.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/LYS.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/DG.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/GLY.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/ILE.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/DC.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/HIS.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/THR.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/LEU.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/MET.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/ALA.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/DT.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/ASN.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/A.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/ARG.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates creating /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html copying pdbfixer/html/convertResidues.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html copying pdbfixer/html/header.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html copying pdbfixer/html/removeChains.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html copying pdbfixer/html/addResidues.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html copying pdbfixer/html/quit.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html copying pdbfixer/html/error.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html copying pdbfixer/html/addHydrogens.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html copying pdbfixer/html/addHeavyAtoms.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html copying pdbfixer/html/start.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html copying pdbfixer/html/saveFile.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html creating /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/data copying pdbfixer/tests/data/4JSV.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/data copying pdbfixer/tests/data/test.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/data creating /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images copying pdbfixer/images/background.jpg -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images copying pdbfixer/images/logo.png -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images copying pdbfixer/images/logo_small.png -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images copying pdbfixer/images/logo.svg -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images rename 's/HIDE_//' pdbfixer/tests/HIDE_* make[1]: Leaving directory '/build/reproducible-path/python-pdbfixer-1.9' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/python-pdbfixer-1.9' dh_auto_test -- --test-pytest I: pybuild base:311: cd /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build; python3.12 -m pytest ============================= test session starts ============================== platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 rootdir: /build/reproducible-path/python-pdbfixer-1.9 plugins: typeguard-4.4.1 collected 2 items pdbfixer/tests/test_removechains.py .. [100%] =============================== warnings summary =============================== pdbfixer/pdbfixer.py:58 /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/pdbfixer.py:58: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html from pkg_resources import resource_filename -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======================== 2 passed, 1 warning in 30.97s ========================= make[1]: Leaving directory '/build/reproducible-path/python-pdbfixer-1.9' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-pdbfixer/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py copying pdbfixer/tests/test_build_and_simulate.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/test_cli.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/test_mutate.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests running install_lib creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/VAL.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/PRO.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/GLU.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/G.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/DA.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/ASP.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/ACE.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/NME.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/GLN.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/PHE.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/TRP.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/C.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/TYR.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/CYS.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/U.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/SER.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/LYS.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/DG.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/GLY.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/ILE.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/DC.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/HIS.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/THR.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/LEU.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/MET.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/ALA.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/DT.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/ASN.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/A.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/ARG.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/convertResidues.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/header.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/removeChains.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/addResidues.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/quit.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/error.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/addHydrogens.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/addHeavyAtoms.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/start.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/saveFile.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/__init__.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/uiserver.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/test_build_and_simulate.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/test_cli.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/data copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/data/4JSV.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/data copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/data/test.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/data copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/HIDE_test_mutate.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/test_removechains.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/__init__.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/HIDE_test_cli.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/__pycache__ copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/__pycache__/test_removechains.cpython-312-pytest-8.3.3.pyc -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/__pycache__ copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/__pycache__ copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/HIDE_test_build_and_simulate.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/test_mutate.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/ui.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/__pycache__ copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/__pycache__/pdbfixer.cpython-312.pyc -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/__pycache__ copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/__pycache__ creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/images copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images/background.jpg -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/images copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images/logo.png -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/images copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images/logo_small.png -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/images copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images/logo.svg -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/images copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/soft.xml -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/pdbfixer.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/uiserver.py to uiserver.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/test_build_and_simulate.py to test_build_and_simulate.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/test_cli.py to test_cli.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/HIDE_test_mutate.py to HIDE_test_mutate.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/test_removechains.py to test_removechains.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/HIDE_test_cli.py to HIDE_test_cli.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/HIDE_test_build_and_simulate.py to HIDE_test_build_and_simulate.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/test_mutate.py to test_mutate.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/ui.py to ui.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/pdbfixer.py to pdbfixer.cpython-312.pyc running install_egg_info running egg_info creating pdbfixer.egg-info writing pdbfixer.egg-info/PKG-INFO writing dependency_links to pdbfixer.egg-info/dependency_links.txt writing entry points to pdbfixer.egg-info/entry_points.txt writing requirements to pdbfixer.egg-info/requires.txt writing top-level names to pdbfixer.egg-info/top_level.txt writing manifest file 'pdbfixer.egg-info/SOURCES.txt' reading manifest file 'pdbfixer.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'pdbfixer.egg-info/SOURCES.txt' Copying pdbfixer.egg-info to /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer-1.9.0.egg-info Skipping SOURCES.txt running install_scripts Installing pdbfixer script to /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/bin dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/python-pdbfixer-1.9' PYTHONPATH=. help2man debian/python3-pdbfixer/usr/bin/pdbfixer --no-info \ --name 'Fix problems in Protein Data Bank files' \ --version-string "1.9" > pdbfixer.1 dh_installman pdbfixer.1 make[1]: Leaving directory '/build/reproducible-path/python-pdbfixer-1.9' debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/python-pdbfixer-1.9' dh_python3 rm debian/python3-pdbfixer/usr/lib/python3/dist-packages/pdbfixer/tests/HIDE_* make[1]: Leaving directory '/build/reproducible-path/python-pdbfixer-1.9' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pdbfixer' in '../python3-pdbfixer_1.9-4_all.deb'. dpkg-genbuildinfo --build=binary -O../python-pdbfixer_1.9-4_armhf.buildinfo dpkg-genchanges --build=binary -O../python-pdbfixer_1.9-4_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from python-pdbfixer-1.9/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/17244 and its subdirectories I: Current time: Mon Nov 25 05:35:25 -12 2024 I: pbuilder-time-stamp: 1732556125 Mon Nov 25 17:35:38 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt32c-armhf-rb.debian.net. Mon Nov 25 17:35:38 UTC 2024 I: Preparing to do remote build '2' on virt32c-armhf-rb.debian.net. Mon Nov 25 17:35:38 UTC 2024 - checking /var/lib/jenkins/offline_nodes if virt32c-armhf-rb.debian.net is marked as down. Mon Nov 25 17:35:38 UTC 2024 - checking via ssh if virt32c-armhf-rb.debian.net is up. removed '/tmp/read-only-fs-test-qUkmRO' ==================================================================================== Mon Nov 25 17:35:43 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on virt32c, called using "2 python-pdbfixer unstable /srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br 1.9-4" as arguments. Mon Nov 25 17:35:43 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-7DQQR0ZI" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Nov 25 17:35:43 UTC 2024 I: Downloading source for unstable/python-pdbfixer=1.9-4 Reading package lists... NOTICE: 'python-pdbfixer' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/python-team/packages/python-pdbfixer.git Please use: git clone https://salsa.debian.org/python-team/packages/python-pdbfixer.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 653 kB of source archives. Get:1 http://cdn-fastly.deb.debian.org/debian unstable/main python-pdbfixer 1.9-4 (dsc) [2196 B] Get:2 http://cdn-fastly.deb.debian.org/debian unstable/main python-pdbfixer 1.9-4 (tar) [648 kB] Get:3 http://cdn-fastly.deb.debian.org/debian unstable/main python-pdbfixer 1.9-4 (diff) [3032 B] Fetched 653 kB in 0s (19.4 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'python-pdbfixer' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/python-team/packages/python-pdbfixer.git Please use: git clone https://salsa.debian.org/python-team/packages/python-pdbfixer.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 653 kB of source archives. Get:1 http://cdn-fastly.deb.debian.org/debian unstable/main python-pdbfixer 1.9-4 (dsc) [2196 B] Get:2 http://cdn-fastly.deb.debian.org/debian unstable/main python-pdbfixer 1.9-4 (tar) [648 kB] Get:3 http://cdn-fastly.deb.debian.org/debian unstable/main python-pdbfixer 1.9-4 (diff) [3032 B] Fetched 653 kB in 0s (19.4 MB/s) Download complete and in download only mode ============================================================================= Re-Building python-pdbfixer in unstable on armhf on virt32c now. Date: Mon Nov 25 09:35:44 PST 2024 Date UTC: Mon Nov 25 17:35:44 UTC 2024 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br/pbuilderrc_Jzm0 + case ${ARCH} in + case $NUM_CPU in + case $ARCH in + locale=it_CH + language=it + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' python-pdbfixer = debian-installer -o python-pdbfixer = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' python-pdbfixer = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br/pbuilderrc_Jzm0 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br/b2 --logfile b2/build.log python-pdbfixer_1.9-4.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Tue Nov 26 07:35:44 +14 2024 I: pbuilder-time-stamp: 1732556144 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pdbfixer_1.9-4.dsc] I: copying [./python-pdbfixer_1.9.orig.tar.gz] I: copying [./python-pdbfixer_1.9-4.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Nov 16 13:59:37 2024 gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A gpgv: issuer "tchet@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-pdbfixer_1.9-4.dsc: no acceptable signature found dpkg-source: info: extracting python-pdbfixer in python-pdbfixer-1.9 dpkg-source: info: unpacking python-pdbfixer_1.9.orig.tar.gz dpkg-source: info: unpacking python-pdbfixer_1.9-4.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2976/tmp/hooks/D01_modify_environment starting debug: Running on virt32c. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Nov 25 17:35 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2976/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2976/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=armhf DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=arm HOST_ARCH=armhf IFS=' ' INVOCATION_ID=130113a27ded4e25a658385d1843a360 LANG=C LANGUAGE=it_CH:it LC_ALL=C MACHTYPE=arm-unknown-linux-gnueabihf MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnueabihf PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2976 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br/pbuilderrc_Jzm0 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br/b2 --logfile b2/build.log python-pdbfixer_1.9-4.dsc' SUDO_GID=113 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://10.0.0.15:3142/ I: uname -a Linux i-capture-the-hostname 6.1.0-28-armmp-lpae #1 SMP Debian 6.1.119-1 (2024-11-22) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2976/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, help2man, python3, python3-legacy-cgi, python3-openmm, python3-pytest, python3-setuptools, rename dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19685 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-legacy-cgi; however: Package python3-legacy-cgi is not installed. pbuilder-satisfydepends-dummy depends on python3-openmm; however: Package python3-openmm is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on rename; however: Package rename is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libopenmm-dev{a} libopenmm8.1{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-legacy-cgi{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-openmm{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pytest{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} rename{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-pygments wget 0 packages upgraded, 78 newly installed, 0 to remove and 0 not upgraded. Need to get 41.2 MB of archives. After unpacking 219 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main armhf liblocale-gettext-perl armhf 1.07-7+b1 [14.7 kB] Get: 2 http://deb.debian.org/debian unstable/main armhf libpython3.12-minimal armhf 3.12.7-3 [800 kB] Get: 3 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.6.4-1 [83.5 kB] Get: 4 http://deb.debian.org/debian unstable/main armhf python3.12-minimal armhf 3.12.7-3 [1808 kB] Get: 5 http://deb.debian.org/debian unstable/main armhf python3-minimal armhf 3.12.7-1 [26.8 kB] Get: 6 http://deb.debian.org/debian unstable/main armhf media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian unstable/main armhf netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian unstable/main armhf tzdata all 2024b-3 [255 kB] Get: 9 http://deb.debian.org/debian unstable/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB] Get: 10 http://deb.debian.org/debian unstable/main armhf libcom-err2 armhf 1.47.1-1+b1 [22.3 kB] Get: 11 http://deb.debian.org/debian unstable/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB] Get: 12 http://deb.debian.org/debian unstable/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B] Get: 13 http://deb.debian.org/debian unstable/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB] Get: 14 http://deb.debian.org/debian unstable/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB] Get: 15 http://deb.debian.org/debian unstable/main armhf libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian unstable/main armhf libtirpc3t64 armhf 1.3.4+ds-1.3+b1 [71.3 kB] Get: 17 http://deb.debian.org/debian unstable/main armhf libnsl2 armhf 1.3.0-3+b3 [35.0 kB] Get: 18 http://deb.debian.org/debian unstable/main armhf readline-common all 8.2-5 [69.3 kB] Get: 19 http://deb.debian.org/debian unstable/main armhf libreadline8t64 armhf 8.2-5 [146 kB] Get: 20 http://deb.debian.org/debian unstable/main armhf libpython3.12-stdlib armhf 3.12.7-3 [1819 kB] Get: 21 http://deb.debian.org/debian unstable/main armhf python3.12 armhf 3.12.7-3 [671 kB] Get: 22 http://deb.debian.org/debian unstable/main armhf libpython3-stdlib armhf 3.12.7-1 [9712 B] Get: 23 http://deb.debian.org/debian unstable/main armhf python3 armhf 3.12.7-1 [27.8 kB] Get: 24 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 25 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 26 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 27 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 28 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.22.5-2 [195 kB] Get: 29 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 30 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-5 [1091 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40.2-11 [83.6 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 33 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 34 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 35 http://deb.debian.org/debian unstable/main armhf autoconf all 2.72-3 [493 kB] Get: 36 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 37 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 38 http://deb.debian.org/debian unstable/main armhf autopoint all 0.22.5-2 [723 kB] Get: 39 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.20 [89.7 kB] Get: 40 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-8 [517 kB] Get: 41 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 42 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 43 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 44 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 45 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 46 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 47 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-5+b1 [9088 kB] Get: 48 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 49 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.22.5-2 [1485 kB] Get: 50 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 51 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian unstable/main armhf debhelper all 13.20 [915 kB] Get: 53 http://deb.debian.org/debian unstable/main armhf python3-autocommand all 2.2.2-3 [13.6 kB] Get: 54 http://deb.debian.org/debian unstable/main armhf python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 55 http://deb.debian.org/debian unstable/main armhf python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 56 http://deb.debian.org/debian unstable/main armhf python3-typeguard all 4.4.1-1 [37.0 kB] Get: 57 http://deb.debian.org/debian unstable/main armhf python3-inflect all 7.3.1-2 [32.4 kB] Get: 58 http://deb.debian.org/debian unstable/main armhf python3-jaraco.context all 6.0.0-1 [7984 B] Get: 59 http://deb.debian.org/debian unstable/main armhf python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 60 http://deb.debian.org/debian unstable/main armhf python3-pkg-resources all 75.2.0-1 [213 kB] Get: 61 http://deb.debian.org/debian unstable/main armhf python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 62 http://deb.debian.org/debian unstable/main armhf python3-zipp all 3.21.0-1 [10.6 kB] Get: 63 http://deb.debian.org/debian unstable/main armhf python3-setuptools all 75.2.0-1 [731 kB] Get: 64 http://deb.debian.org/debian unstable/main armhf dh-python all 6.20241024 [109 kB] Get: 65 http://deb.debian.org/debian unstable/main armhf help2man armhf 1.49.3 [198 kB] Get: 66 http://deb.debian.org/debian unstable/main armhf libblas3 armhf 3.12.0-4 [111 kB] Get: 67 http://deb.debian.org/debian unstable/main armhf libgfortran5 armhf 14.2.0-8 [263 kB] Get: 68 http://deb.debian.org/debian unstable/main armhf liblapack3 armhf 3.12.0-4 [1828 kB] Get: 69 http://deb.debian.org/debian unstable/main armhf libopenmm8.1 armhf 8.1.2+dfsg-1+b1 [882 kB] Get: 70 http://deb.debian.org/debian unstable/main armhf libopenmm-dev armhf 8.1.2+dfsg-1+b1 [327 kB] Get: 71 http://deb.debian.org/debian unstable/main armhf python3-iniconfig all 1.1.1-2 [6396 B] Get: 72 http://deb.debian.org/debian unstable/main armhf python3-legacy-cgi all 2.6.1-2 [16.1 kB] Get: 73 http://deb.debian.org/debian unstable/main armhf python3-numpy armhf 1:1.26.4+ds-12 [3676 kB] Get: 74 http://deb.debian.org/debian unstable/main armhf python3-openmm armhf 8.1.2+dfsg-1+b1 [6720 kB] Get: 75 http://deb.debian.org/debian unstable/main armhf python3-packaging all 24.2-1 [55.3 kB] Get: 76 http://deb.debian.org/debian unstable/main armhf python3-pluggy all 1.5.0-1 [26.9 kB] Get: 77 http://deb.debian.org/debian unstable/main armhf python3-pytest all 8.3.3-1 [249 kB] Get: 78 http://deb.debian.org/debian unstable/main armhf rename all 2.02-1 [21.8 kB] Fetched 41.2 MB in 1s (36.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19685 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-7+b1_armhf.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libpython3.12-minimal:armhf. Preparing to unpack .../libpython3.12-minimal_3.12.7-3_armhf.deb ... Unpacking libpython3.12-minimal:armhf (3.12.7-3) ... Selecting previously unselected package libexpat1:armhf. 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Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../04-libkrb5support0_1.21.3-3_armhf.deb ... Unpacking libkrb5support0:armhf (1.21.3-3) ... Selecting previously unselected package libcom-err2:armhf. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_armhf.deb ... Unpacking libcom-err2:armhf (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../06-libk5crypto3_1.21.3-3_armhf.deb ... Unpacking libk5crypto3:armhf (1.21.3-3) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../07-libkeyutils1_1.6.3-4_armhf.deb ... Unpacking libkeyutils1:armhf (1.6.3-4) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../08-libkrb5-3_1.21.3-3_armhf.deb ... Unpacking libkrb5-3:armhf (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:armhf. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:armhf. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:armhf (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:armhf. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_armhf.deb ... Unpacking libnsl2:armhf (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:armhf. Preparing to unpack .../14-libreadline8t64_8.2-5_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:armhf. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_armhf.deb ... Unpacking libpython3.12-stdlib:armhf (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_armhf.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../17-libpython3-stdlib_3.12.7-1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.12.7-1) ... Setting up python3-minimal (3.12.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21082 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.7-1_armhf.deb ... Unpacking python3 (3.12.7-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3+b1_armhf.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.22.5-2_armhf.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-5_armhf.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.40.2-11_armhf.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../09-libpipeline1_1.5.8-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.0-1_armhf.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../22-libelf1t64_0.192-4_armhf.deb ... Unpacking libelf1t64:armhf (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../24-libicu72_72.1-5+b1_armhf.deb ... Unpacking libicu72:armhf (72.1-5+b1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_armhf.deb ... Unpacking libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.22.5-2_armhf.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../30-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../31-python3-more-itertools_10.5.0-1_all.deb ... Unpacking python3-more-itertools (10.5.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../32-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../33-python3-typeguard_4.4.1-1_all.deb ... Unpacking python3-typeguard (4.4.1-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../34-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../35-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../36-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../37-python3-pkg-resources_75.2.0-1_all.deb ... Unpacking python3-pkg-resources (75.2.0-1) ... Selecting previously unselected package python3-jaraco.text. Preparing to unpack .../38-python3-jaraco.text_4.0.0-1_all.deb ... Unpacking python3-jaraco.text (4.0.0-1) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../39-python3-zipp_3.21.0-1_all.deb ... Unpacking python3-zipp (3.21.0-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../40-python3-setuptools_75.2.0-1_all.deb ... Unpacking python3-setuptools (75.2.0-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../41-dh-python_6.20241024_all.deb ... Unpacking dh-python (6.20241024) ... Selecting previously unselected package help2man. Preparing to unpack .../42-help2man_1.49.3_armhf.deb ... Unpacking help2man (1.49.3) ... Selecting previously unselected package libblas3:armhf. Preparing to unpack .../43-libblas3_3.12.0-4_armhf.deb ... Unpacking libblas3:armhf (3.12.0-4) ... Selecting previously unselected package libgfortran5:armhf. Preparing to unpack .../44-libgfortran5_14.2.0-8_armhf.deb ... Unpacking libgfortran5:armhf (14.2.0-8) ... Selecting previously unselected package liblapack3:armhf. Preparing to unpack .../45-liblapack3_3.12.0-4_armhf.deb ... Unpacking liblapack3:armhf (3.12.0-4) ... Selecting previously unselected package libopenmm8.1. Preparing to unpack .../46-libopenmm8.1_8.1.2+dfsg-1+b1_armhf.deb ... Unpacking libopenmm8.1 (8.1.2+dfsg-1+b1) ... Selecting previously unselected package libopenmm-dev. Preparing to unpack .../47-libopenmm-dev_8.1.2+dfsg-1+b1_armhf.deb ... Unpacking libopenmm-dev (8.1.2+dfsg-1+b1) ... Selecting previously unselected package python3-iniconfig. Preparing to unpack .../48-python3-iniconfig_1.1.1-2_all.deb ... Unpacking python3-iniconfig (1.1.1-2) ... Selecting previously unselected package python3-legacy-cgi. Preparing to unpack .../49-python3-legacy-cgi_2.6.1-2_all.deb ... Unpacking python3-legacy-cgi (2.6.1-2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../50-python3-numpy_1%3a1.26.4+ds-12_armhf.deb ... Unpacking python3-numpy (1:1.26.4+ds-12) ... Selecting previously unselected package python3-openmm. Preparing to unpack .../51-python3-openmm_8.1.2+dfsg-1+b1_armhf.deb ... Unpacking python3-openmm (8.1.2+dfsg-1+b1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../52-python3-packaging_24.2-1_all.deb ... Unpacking python3-packaging (24.2-1) ... Selecting previously unselected package python3-pluggy. Preparing to unpack .../53-python3-pluggy_1.5.0-1_all.deb ... Unpacking python3-pluggy (1.5.0-1) ... Selecting previously unselected package python3-pytest. Preparing to unpack .../54-python3-pytest_8.3.3-1_all.deb ... Unpacking python3-pytest (8.3.3-1) ... Selecting previously unselected package rename. Preparing to unpack .../55-rename_2.02-1_all.deb ... Unpacking rename (2.02-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:armhf (1.5.8-1) ... Setting up libkeyutils1:armhf (1.6.3-4) ... Setting up libicu72:armhf (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:armhf (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up rename (2.02-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up libcom-err2:armhf (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:armhf (0.192-4) ... Setting up libkrb5support0:armhf (1.21.3-3) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Nov 25 17:36:32 UTC 2024. Universal Time is now: Mon Nov 25 17:36:32 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libblas3:armhf (3.12.0-4) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:armhf (1.21.3-3) ... Setting up libgfortran5:armhf (14.2.0-8) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:armhf (0.0.8-1+b2) ... Setting up netbase (6.4) ... Setting up libkrb5-3:armhf (1.21.3-3) ... Setting up libopenmm8.1 (8.1.2+dfsg-1+b1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:armhf (3.12.0-4) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up libopenmm-dev (8.1.2+dfsg-1+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:armhf (1.21.3-3) ... Setting up libreadline8t64:armhf (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libtirpc3t64:armhf (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:armhf (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:armhf (3.12.7-3) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:armhf (3.12.7-1) ... Setting up python3 (3.12.7-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-packaging (24.2-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-legacy-cgi (2.6.1-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up python3-openmm (8.1.2+dfsg-1+b1) ... /usr/lib/python3/dist-packages/openmm/__init__.py:16: SyntaxWarning: invalid escape sequence '\p' os.environ['PATH'] = '%(lib)s;%(lib)s\plugins;%(path)s' % { /usr/lib/python3/dist-packages/openmm/app/gromacsgrofile.py:62: SyntaxWarning: invalid escape sequence '\.' return match('^[-+]?[0-9]*\.?[0-9]*([eEdD][-+]?[0-9]+)?$',word) /usr/lib/python3/dist-packages/openmm/app/internal/amber_file_parser.py:65: SyntaxWarning: invalid escape sequence '\(' FORMAT_RE_PATTERN=re.compile("([0-9]+)\(?([a-zA-Z]+)([0-9]+)\.?([0-9]*)\)?") /usr/lib/python3/dist-packages/openmm/app/internal/pdbstructure.py:1071: SyntaxWarning: invalid escape sequence '\.' if not re.match("pdb.%2s.\.ent\.gz" % subdir , pdb_file): /usr/lib/python3/dist-packages/openmm/app/internal/pdbstructure.py:1082: SyntaxWarning: invalid escape sequence '\.' if not re.match("pdb.%2s.\.ent\.gz" % subdir , pdb_file): /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:358: SyntaxWarning: invalid escape sequence '\S' "(?:_(.+?)[.](\S+))" "|" # _category.attribute /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:360: SyntaxWarning: invalid escape sequence '\s' "(?:['](.*?)(?:[']\s|[']$))" "|" # single quoted strings /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:361: SyntaxWarning: invalid escape sequence '\s' "(?:[\"](.*?)(?:[\"]\s|[\"]$))" "|" # double quoted strings /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:363: SyntaxWarning: invalid escape sequence '\s' "(?:\s*#.*$)" "|" # comments (dumped) /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:365: SyntaxWarning: invalid escape sequence '\S' "(\S+)" # unquoted words /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:416: SyntaxWarning: invalid escape sequence '\S' """ Tokenizer method for the mmCIF syntax file - /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:444: SyntaxWarning: invalid escape sequence '\S' "(?:_(.+?)[.](\S+))" "|" # _category.attribute /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:446: SyntaxWarning: invalid escape sequence '\s' "(?:['\"](.*?)(?:['\"]\s|['\"]$))" "|" # quoted strings /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:448: SyntaxWarning: invalid escape sequence '\s' "(?:\s*#.*$)" "|" # comments (dumped) /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:450: SyntaxWarning: invalid escape sequence '\S' "(\S+)" # unquoted words /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:347: SyntaxWarning: invalid escape sequence '\S' "(?:_(.+?)[.](\S+))" "|" # _category.attribute /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:349: SyntaxWarning: invalid escape sequence '\s' "(?:['](.*?)(?:[']\s|[']$))" "|" # single quoted strings /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:350: SyntaxWarning: invalid escape sequence '\s' "(?:[\"](.*?)(?:[\"]\s|[\"]$))" "|" # double quoted strings /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:352: SyntaxWarning: invalid escape sequence '\s' "(?:\s*#.*$)" "|" # comments (dumped) /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:354: SyntaxWarning: invalid escape sequence '\S' "(\S+)" # unquoted words /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:419: SyntaxWarning: invalid escape sequence '\S' "(?:_(.+?)[.](\S+))" "|" # _category.attribute /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:421: SyntaxWarning: invalid escape sequence '\s' "(?:['\"](.*?)(?:['\"]\s|['\"]$))" "|" # quoted strings /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:423: SyntaxWarning: invalid escape sequence '\s' "(?:\s*#.*$)" "|" # comments (dumped) /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:425: SyntaxWarning: invalid escape sequence '\S' "(\S+)" # unquoted words /usr/lib/python3/dist-packages/openmm/app/metadynamics.py:247: SyntaxWarning: invalid escape sequence '\.' pattern = re.compile('bias_(.*)_(.*)\.npy') /usr/lib/python3/dist-packages/openmm/openmm.py:1556: SyntaxWarning: invalid escape sequence '\S' match = re.search("<([^?]\S*)", inputString) Setting up dh-python (6.20241024) ... Processing triggers for libc-bin (2.40-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2976/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/2976/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/python-pdbfixer-1.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-pdbfixer_1.9-4_source.changes dpkg-buildpackage: info: source package python-pdbfixer dpkg-buildpackage: info: source version 1.9-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf dpkg-source: info: using options from python-pdbfixer-1.9/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-pdbfixer-1.9' dh_auto_clean I: pybuild base:311: python3.12 setup.py clean running clean removing '/build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it rm -rf pdbfixer.egg-info make[1]: Leaving directory '/build/reproducible-path/python-pdbfixer-1.9' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/python-pdbfixer-1.9' for TEST in test_build_and_simulate.py test_cli.py test_mutate.py; do mv pdbfixer/tests/${TEST} pdbfixer/tests/HIDE_${TEST}; done dh_auto_build I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer copying pdbfixer/pdbfixer.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer copying pdbfixer/ui.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer copying pdbfixer/__init__.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer copying pdbfixer/uiserver.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer creating /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/HIDE_test_mutate.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/HIDE_test_build_and_simulate.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/HIDE_test_cli.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/test_removechains.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/__init__.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests copying pdbfixer/soft.xml -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer creating /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html copying pdbfixer/html/quit.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html copying pdbfixer/html/removeChains.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html copying pdbfixer/html/header.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html copying pdbfixer/html/error.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html copying pdbfixer/html/addHydrogens.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html copying pdbfixer/html/convertResidues.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html copying pdbfixer/html/addHeavyAtoms.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html copying pdbfixer/html/start.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html copying pdbfixer/html/addResidues.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html copying pdbfixer/html/saveFile.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html creating /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/CYS.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/PHE.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/ILE.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/SER.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/U.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/TYR.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/GLU.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/DC.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/VAL.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/DA.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/C.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/NME.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/ACE.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/ASP.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/TRP.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/PRO.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/MET.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/ASN.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/ARG.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/LYS.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/HIS.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/ALA.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/GLY.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/GLN.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/DG.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/G.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/LEU.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/DT.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/THR.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/A.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates creating /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images copying pdbfixer/images/background.jpg -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images copying pdbfixer/images/logo_small.png -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images copying pdbfixer/images/logo.png -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images copying pdbfixer/images/logo.svg -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images creating /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/data copying pdbfixer/tests/data/4JSV.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/data copying pdbfixer/tests/data/test.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/data rename 's/HIDE_//' pdbfixer/tests/HIDE_* make[1]: Leaving directory '/build/reproducible-path/python-pdbfixer-1.9' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/python-pdbfixer-1.9' dh_auto_test -- --test-pytest I: pybuild base:311: cd /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build; python3.12 -m pytest ============================= test session starts ============================== platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 rootdir: /build/reproducible-path/python-pdbfixer-1.9 plugins: typeguard-4.4.1 collected 2 items pdbfixer/tests/test_removechains.py .. [100%] =============================== warnings summary =============================== pdbfixer/pdbfixer.py:58 /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/pdbfixer.py:58: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html from pkg_resources import resource_filename -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======================== 2 passed, 1 warning in 40.62s ========================= make[1]: Leaving directory '/build/reproducible-path/python-pdbfixer-1.9' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-pdbfixer/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py copying pdbfixer/tests/test_cli.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/test_mutate.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/test_build_and_simulate.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests running install_lib creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/quit.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/removeChains.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/header.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/error.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/addHydrogens.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/convertResidues.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/addHeavyAtoms.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/start.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/addResidues.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/saveFile.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/CYS.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/PHE.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/ILE.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/SER.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/U.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/TYR.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/GLU.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/DC.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/VAL.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/DA.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/C.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/NME.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/ACE.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/ASP.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/TRP.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/PRO.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/MET.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/ASN.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/ARG.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/LYS.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/HIS.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/ALA.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/GLY.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/GLN.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/DG.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/G.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/LEU.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/DT.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/THR.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/A.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/pdbfixer.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/ui.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/__pycache__ copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/__pycache__/pdbfixer.cpython-312.pyc -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/__pycache__ copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/__pycache__ creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/images copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images/background.jpg -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/images copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images/logo_small.png -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/images copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images/logo.png -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/images copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images/logo.svg -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/images copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/__init__.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/HIDE_test_mutate.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/data copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/data/4JSV.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/data copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/data/test.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/data copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/HIDE_test_build_and_simulate.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/HIDE_test_cli.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/test_removechains.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/__pycache__ copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/__pycache__ copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/__pycache__/test_removechains.cpython-312-pytest-8.3.3.pyc -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/__pycache__ copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/test_cli.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/__init__.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/test_mutate.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/test_build_and_simulate.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/uiserver.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/soft.xml -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/pdbfixer.py to pdbfixer.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/ui.py to ui.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/HIDE_test_mutate.py to HIDE_test_mutate.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/HIDE_test_build_and_simulate.py to HIDE_test_build_and_simulate.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/HIDE_test_cli.py to HIDE_test_cli.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/test_removechains.py to test_removechains.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/test_cli.py to test_cli.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/test_mutate.py to test_mutate.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/test_build_and_simulate.py to test_build_and_simulate.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/uiserver.py to uiserver.cpython-312.pyc running install_egg_info running egg_info creating pdbfixer.egg-info writing pdbfixer.egg-info/PKG-INFO writing dependency_links to pdbfixer.egg-info/dependency_links.txt writing entry points to pdbfixer.egg-info/entry_points.txt writing requirements to pdbfixer.egg-info/requires.txt writing top-level names to pdbfixer.egg-info/top_level.txt writing manifest file 'pdbfixer.egg-info/SOURCES.txt' reading manifest file 'pdbfixer.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'pdbfixer.egg-info/SOURCES.txt' Copying pdbfixer.egg-info to /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer-1.9.0.egg-info Skipping SOURCES.txt running install_scripts Installing pdbfixer script to /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/bin dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/python-pdbfixer-1.9' PYTHONPATH=. help2man debian/python3-pdbfixer/usr/bin/pdbfixer --no-info \ --name 'Fix problems in Protein Data Bank files' \ --version-string "1.9" > pdbfixer.1 dh_installman pdbfixer.1 make[1]: Leaving directory '/build/reproducible-path/python-pdbfixer-1.9' debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/python-pdbfixer-1.9' dh_python3 rm debian/python3-pdbfixer/usr/lib/python3/dist-packages/pdbfixer/tests/HIDE_* make[1]: Leaving directory '/build/reproducible-path/python-pdbfixer-1.9' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pdbfixer' in '../python3-pdbfixer_1.9-4_all.deb'. dpkg-genbuildinfo --build=binary -O../python-pdbfixer_1.9-4_armhf.buildinfo dpkg-genchanges --build=binary -O../python-pdbfixer_1.9-4_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from python-pdbfixer-1.9/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2976/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2976/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2976 and its subdirectories I: Current time: Tue Nov 26 07:38:35 +14 2024 I: pbuilder-time-stamp: 1732556315 + false + set +x Mon Nov 25 17:38:35 UTC 2024 I: Signing ./b2/python-pdbfixer_1.9-4_armhf.buildinfo as python-pdbfixer_1.9-4_armhf.buildinfo.asc Mon Nov 25 17:38:36 UTC 2024 I: Signed ./b2/python-pdbfixer_1.9-4_armhf.buildinfo as ./b2/python-pdbfixer_1.9-4_armhf.buildinfo.asc Mon Nov 25 17:38:36 UTC 2024 - build #2 for python-pdbfixer/unstable/armhf on virt32c done. Starting cleanup. All cleanup done. Mon Nov 25 17:38:36 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-7DQQR0ZI, removing. /srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br: total 96 drwxr-xr-x 2 jenkins jenkins 4096 Nov 25 17:35 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 25 17:38 b2 -rw-r--r-- 1 jenkins jenkins 2196 Nov 16 14:14 python-pdbfixer_1.9-4.dsc -rw------- 1 jenkins jenkins 78178 Nov 25 17:35 rbuildlog.4TysSvA /srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br/b1: total 544 -rw-r--r-- 1 jenkins jenkins 74531 Nov 25 17:35 build.log -rw-r--r-- 1 jenkins jenkins 3032 Nov 25 17:35 python-pdbfixer_1.9-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2196 Nov 25 17:35 python-pdbfixer_1.9-4.dsc -rw-r--r-- 1 jenkins jenkins 6123 Nov 25 17:35 python-pdbfixer_1.9-4_armhf.buildinfo -rw-r--r-- 1 jenkins jenkins 7005 Nov 25 17:35 python-pdbfixer_1.9-4_armhf.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1146 Nov 25 17:35 python-pdbfixer_1.9-4_armhf.changes -rw-r--r-- 1 jenkins jenkins 1300 Nov 25 17:35 python-pdbfixer_1.9-4_source.changes -rw-r--r-- 1 jenkins jenkins 436888 Nov 25 17:35 python3-pdbfixer_1.9-4_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br/b2: total 544 -rw-r--r-- 1 jenkins jenkins 76464 Nov 25 17:38 build.log -rw-r--r-- 1 jenkins jenkins 3032 Nov 25 17:38 python-pdbfixer_1.9-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2196 Nov 25 17:38 python-pdbfixer_1.9-4.dsc -rw-r--r-- 1 jenkins jenkins 6128 Nov 25 17:38 python-pdbfixer_1.9-4_armhf.buildinfo -rw-r--r-- 1 jenkins jenkins 7010 Nov 25 17:38 python-pdbfixer_1.9-4_armhf.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1146 Nov 25 17:38 python-pdbfixer_1.9-4_armhf.changes -rw-r--r-- 1 jenkins jenkins 1300 Nov 25 17:38 python-pdbfixer_1.9-4_source.changes -rw-r--r-- 1 jenkins jenkins 436888 Nov 25 17:38 python3-pdbfixer_1.9-4_all.deb Mon Nov 25 17:38:43 UTC 2024 I: Deleting $TMPDIR on virt32c-armhf-rb.debian.net. Mon Nov 25 17:38:45 UTC 2024 I: python-pdbfixer_1.9-4_armhf.changes: Format: 1.8 Date: Sat, 16 Nov 2024 02:02:26 +0100 Source: python-pdbfixer Binary: python3-pdbfixer Architecture: all Version: 1.9-4 Distribution: unstable Urgency: medium Maintainer: Debian Python Team Changed-By: Alexandre Detiste Description: python3-pdbfixer - Fix problems in Protein Data Bank files (Python 3) Closes: 1084617 Changes: python-pdbfixer (1.9-4) unstable; urgency=medium . * Team Upload * Use dh-sequence-python3 * Add dep on python3-legacy-cgi (Closes: #1084617) Checksums-Sha1: d0148249bb89f462ef9ec2be782cba4c68d6037f 6123 python-pdbfixer_1.9-4_armhf.buildinfo f97583588d985a90ffa2ba3d1c723f12301bddab 436888 python3-pdbfixer_1.9-4_all.deb Checksums-Sha256: 98df38378e5f7a3bf23a7e30ce265c9e3613c5ae069ea92f93471e2ffcf7bfb3 6123 python-pdbfixer_1.9-4_armhf.buildinfo 4196468221a6cb13a9b8efdde278c8f3ac9bdb487e06022a6951197e6c2cba17 436888 python3-pdbfixer_1.9-4_all.deb Files: 6cb3f21d888f833d23728d90b21056a0 6123 python optional python-pdbfixer_1.9-4_armhf.buildinfo 6284dc0abf05c7296a719d8c3e37acc5 436888 python optional python3-pdbfixer_1.9-4_all.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/armhf/python-pdbfixer_1.9-3.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/armhf/python-pdbfixer_1.9-3.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/python-pdbfixer_1.9-3.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/python-pdbfixer_1.9-3.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/armhf/python-pdbfixer_1.9-3_armhf.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/python-pdbfixer_1.9-3.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-11-25 17:35:31.438861702 +0000 +++ b2/build.log 2024-11-25 17:38:40.102366465 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Nov 25 05:32:29 -12 2024 -I: pbuilder-time-stamp: 1732555949 +I: Current time: Tue Nov 26 07:35:44 +14 2024 +I: pbuilder-time-stamp: 1732556144 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: unpacking python-pdbfixer_1.9-4.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/17244/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2976/tmp/hooks/D01_modify_environment starting +debug: Running on virt32c. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 25 17:35 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2976/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2976/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='06268da6c50641f8b67feccb75d2690f' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='17244' - PS1='# ' - PS2='> ' + INVOCATION_ID=130113a27ded4e25a658385d1843a360 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2976 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br/pbuilderrc_wHuD --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br/b1 --logfile b1/build.log python-pdbfixer_1.9-4.dsc' - SUDO_GID='114' - SUDO_UID='108' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br/pbuilderrc_Jzm0 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br/b2 --logfile b2/build.log python-pdbfixer_1.9-4.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt64a 6.1.0-28-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-armmp-lpae #1 SMP Debian 6.1.119-1 (2024-11-22) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/17244/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/2976/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -201,7 +233,7 @@ Get: 76 http://deb.debian.org/debian unstable/main armhf python3-pluggy all 1.5.0-1 [26.9 kB] Get: 77 http://deb.debian.org/debian unstable/main armhf python3-pytest all 8.3.3-1 [249 kB] Get: 78 http://deb.debian.org/debian unstable/main armhf rename all 2.02-1 [21.8 kB] -Fetched 41.2 MB in 2s (17.2 MB/s) +Fetched 41.2 MB in 1s (36.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19685 files and directories currently installed.) @@ -471,8 +503,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon Nov 25 17:34:02 UTC 2024. -Universal Time is now: Mon Nov 25 17:34:02 UTC 2024. +Local time is now: Mon Nov 25 17:36:32 UTC 2024. +Universal Time is now: Mon Nov 25 17:36:32 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -597,7 +629,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-pdbfixer-1.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pdbfixer_1.9-4_source.changes +I: user script /srv/workspace/pbuilder/2976/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2976/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-pdbfixer-1.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-pdbfixer_1.9-4_source.changes dpkg-buildpackage: info: source package python-pdbfixer dpkg-buildpackage: info: source version 1.9-4 dpkg-buildpackage: info: source distribution unstable @@ -634,67 +670,67 @@ running build running build_py creating /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer +copying pdbfixer/pdbfixer.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer +copying pdbfixer/ui.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer copying pdbfixer/__init__.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer copying pdbfixer/uiserver.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer -copying pdbfixer/ui.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer -copying pdbfixer/pdbfixer.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer creating /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/HIDE_test_mutate.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests +copying pdbfixer/tests/HIDE_test_build_and_simulate.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests +copying pdbfixer/tests/HIDE_test_cli.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/test_removechains.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/__init__.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests -copying pdbfixer/tests/HIDE_test_cli.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests -copying pdbfixer/tests/HIDE_test_build_and_simulate.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests copying pdbfixer/soft.xml -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer +creating /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html +copying pdbfixer/html/quit.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html +copying pdbfixer/html/removeChains.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html +copying pdbfixer/html/header.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html +copying pdbfixer/html/error.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html +copying pdbfixer/html/addHydrogens.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html +copying pdbfixer/html/convertResidues.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html +copying pdbfixer/html/addHeavyAtoms.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html +copying pdbfixer/html/start.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html +copying pdbfixer/html/addResidues.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html +copying pdbfixer/html/saveFile.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html creating /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates -copying pdbfixer/templates/VAL.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates -copying pdbfixer/templates/PRO.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates +copying pdbfixer/templates/CYS.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates +copying pdbfixer/templates/PHE.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates +copying pdbfixer/templates/ILE.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates +copying pdbfixer/templates/SER.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates +copying pdbfixer/templates/U.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates +copying pdbfixer/templates/TYR.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/GLU.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates -copying pdbfixer/templates/G.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates +copying pdbfixer/templates/DC.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates +copying pdbfixer/templates/VAL.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/DA.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates -copying pdbfixer/templates/ASP.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates -copying pdbfixer/templates/ACE.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates +copying pdbfixer/templates/C.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/NME.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates -copying pdbfixer/templates/GLN.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates -copying pdbfixer/templates/PHE.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates +copying pdbfixer/templates/ACE.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates +copying pdbfixer/templates/ASP.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/TRP.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates -copying pdbfixer/templates/C.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates -copying pdbfixer/templates/TYR.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates -copying pdbfixer/templates/CYS.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates -copying pdbfixer/templates/U.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates -copying pdbfixer/templates/SER.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates +copying pdbfixer/templates/PRO.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates +copying pdbfixer/templates/MET.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates +copying pdbfixer/templates/ASN.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates +copying pdbfixer/templates/ARG.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/LYS.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates -copying pdbfixer/templates/DG.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates -copying pdbfixer/templates/GLY.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates -copying pdbfixer/templates/ILE.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates -copying pdbfixer/templates/DC.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/HIS.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates -copying pdbfixer/templates/THR.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates -copying pdbfixer/templates/LEU.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates -copying pdbfixer/templates/MET.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/ALA.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates +copying pdbfixer/templates/GLY.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates +copying pdbfixer/templates/GLN.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates +copying pdbfixer/templates/DG.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates +copying pdbfixer/templates/G.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates +copying pdbfixer/templates/LEU.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/DT.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates -copying pdbfixer/templates/ASN.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates +copying pdbfixer/templates/THR.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates copying pdbfixer/templates/A.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates -copying pdbfixer/templates/ARG.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates -creating /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html -copying pdbfixer/html/convertResidues.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html -copying pdbfixer/html/header.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html -copying pdbfixer/html/removeChains.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html -copying pdbfixer/html/addResidues.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html -copying pdbfixer/html/quit.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html -copying pdbfixer/html/error.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html -copying pdbfixer/html/addHydrogens.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html -copying pdbfixer/html/addHeavyAtoms.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html -copying pdbfixer/html/start.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html -copying pdbfixer/html/saveFile.html -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html -creating /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/data -copying pdbfixer/tests/data/4JSV.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/data -copying pdbfixer/tests/data/test.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/data creating /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images copying pdbfixer/images/background.jpg -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images -copying pdbfixer/images/logo.png -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images copying pdbfixer/images/logo_small.png -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images +copying pdbfixer/images/logo.png -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images copying pdbfixer/images/logo.svg -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images +creating /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/data +copying pdbfixer/tests/data/4JSV.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/data +copying pdbfixer/tests/data/test.pdb -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/data rename 's/HIDE_//' pdbfixer/tests/HIDE_* make[1]: Leaving directory '/build/reproducible-path/python-pdbfixer-1.9' debian/rules override_dh_auto_test @@ -715,7 +751,7 @@ from pkg_resources import resource_filename -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -======================== 2 passed, 1 warning in 30.97s ========================= +======================== 2 passed, 1 warning in 40.62s ========================= make[1]: Leaving directory '/build/reproducible-path/python-pdbfixer-1.9' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild @@ -738,94 +774,94 @@ self.initialize_options() running build running build_py -copying pdbfixer/tests/test_build_and_simulate.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/test_cli.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests copying pdbfixer/tests/test_mutate.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests +copying pdbfixer/tests/test_build_and_simulate.py -> /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests running install_lib creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer +creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/quit.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/removeChains.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/header.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/error.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/addHydrogens.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/convertResidues.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/addHeavyAtoms.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/start.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/addResidues.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/saveFile.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/VAL.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/PRO.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/CYS.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/PHE.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/ILE.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/SER.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/U.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/TYR.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/GLU.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/G.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/DC.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/VAL.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/DA.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/ASP.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/ACE.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/C.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/NME.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/GLN.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/PHE.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/ACE.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/ASP.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/TRP.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/C.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/TYR.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/CYS.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/U.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/SER.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/PRO.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/MET.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/ASN.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/ARG.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/LYS.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/DG.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/GLY.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/ILE.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/DC.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/HIS.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/THR.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/LEU.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/MET.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/ALA.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/GLY.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/GLN.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/DG.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/G.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/LEU.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/DT.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/ASN.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/THR.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/A.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/templates/ARG.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/templates -creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/convertResidues.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/header.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/removeChains.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/addResidues.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/quit.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/error.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/addHydrogens.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/addHeavyAtoms.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/start.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/html/saveFile.html -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/html +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/pdbfixer.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/ui.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer +creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/__pycache__ +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/__pycache__/pdbfixer.cpython-312.pyc -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/__pycache__ +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/__pycache__ +creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/images +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images/background.jpg -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/images +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images/logo_small.png -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/images +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images/logo.png -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/images +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images/logo.svg -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/images copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/__init__.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/uiserver.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/test_build_and_simulate.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/test_cli.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/HIDE_test_mutate.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/data copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/data/4JSV.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/data copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/data/test.pdb -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/data -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/HIDE_test_mutate.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/test_removechains.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/__init__.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/HIDE_test_build_and_simulate.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/HIDE_test_cli.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/test_removechains.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/__pycache__ -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/__pycache__/test_removechains.cpython-312-pytest-8.3.3.pyc -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/__pycache__ copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/__pycache__ -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/HIDE_test_build_and_simulate.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/__pycache__/test_removechains.cpython-312-pytest-8.3.3.pyc -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/__pycache__ +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/test_cli.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/__init__.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/test_mutate.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/ui.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer -creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/__pycache__ -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/__pycache__/pdbfixer.cpython-312.pyc -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/__pycache__ -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/__pycache__ -creating /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/images -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images/background.jpg -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/images -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images/logo.png -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/images -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images/logo_small.png -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/images -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/images/logo.svg -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/images +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/tests/test_build_and_simulate.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests +copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/uiserver.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/soft.xml -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer -copying /build/reproducible-path/python-pdbfixer-1.9/.pybuild/cpython3_3.12_pdbfixer/build/pdbfixer/pdbfixer.py -> /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer +byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/pdbfixer.py to pdbfixer.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/ui.py to ui.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/uiserver.py to uiserver.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/test_build_and_simulate.py to test_build_and_simulate.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/test_cli.py to test_cli.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/HIDE_test_mutate.py to HIDE_test_mutate.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/HIDE_test_build_and_simulate.py to HIDE_test_build_and_simulate.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/HIDE_test_cli.py to HIDE_test_cli.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/test_removechains.py to test_removechains.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/test_cli.py to test_cli.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/HIDE_test_cli.py to HIDE_test_cli.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/HIDE_test_build_and_simulate.py to HIDE_test_build_and_simulate.cpython-312.pyc byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/test_mutate.py to test_mutate.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/ui.py to ui.cpython-312.pyc -byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/pdbfixer.py to pdbfixer.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/tests/test_build_and_simulate.py to test_build_and_simulate.cpython-312.pyc +byte-compiling /build/reproducible-path/python-pdbfixer-1.9/debian/python3-pdbfixer/usr/lib/python3.12/dist-packages/pdbfixer/uiserver.py to uiserver.cpython-312.pyc running install_egg_info running egg_info creating pdbfixer.egg-info @@ -876,12 +912,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2976/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2976/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/17244 and its subdirectories -I: Current time: Mon Nov 25 05:35:25 -12 2024 -I: pbuilder-time-stamp: 1732556125 +I: removing directory /srv/workspace/pbuilder/2976 and its subdirectories +I: Current time: Tue Nov 26 07:38:35 +14 2024 +I: pbuilder-time-stamp: 1732556315 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/python-pdbfixer_1.9-4.diff: 90.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/python-pdbfixer_1.9-4.diff.gz b2/build.log: 85.3% -- replaced with stdout Compressing the 1st log... b1/build.log: 85.9% -- replaced with stdout Mon Nov 25 17:38:46 UTC 2024 I: diffoscope 283 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_python-pdbfixer_unstable_armhf_1732556326 + touch /var/log/reproducible-builds/diffoscope_stamp_python-pdbfixer_unstable_armhf_1732556326 + RESULT=0 + systemd-run '--description=diffoscope on python-pdbfixer/1.9-4 in unstable/armhf' --slice=rb-build-diffoscope.slice -u rb-diffoscope-armhf_8-11687 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br --run-session -c jenkins-reproducible-unstable-diffoscope-7042eda5-80d0-49fe-a34f-317b9afc97f1 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br/dbd-tmp-QQJiVzA ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br/python-pdbfixer_1.9-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br/python-pdbfixer_1.9-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br/python-pdbfixer_1.9-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br/b1/python-pdbfixer_1.9-4_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br/b2/python-pdbfixer_1.9-4_armhf.changes' + false + set +x Running as unit: rb-diffoscope-armhf_8-11687.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br/python-pdbfixer_1.9-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br/python-pdbfixer_1.9-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br/python-pdbfixer_1.9-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br/b1/python-pdbfixer_1.9-4_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.2P3Pb0br/b2/python-pdbfixer_1.9-4_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.373s) 0.373s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.018s) 0.018s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 702ms CPU time consumed: 684ms _ _ _ _ __ _ _ __ _ _| |_| |__ ___ _ __ _ __ __| | |__ / _(_)_ _____ _ __ | '_ \| | | | __| '_ \ / _ \| '_ \ _____| '_ \ / _` | '_ \| |_| \ \/ / _ \ '__| | |_) | |_| | |_| | | | (_) | | | |_____| |_) | (_| | |_) | _| |> < __/ | | .__/ \__, |\__|_| |_|\___/|_| |_| | .__/ \__,_|_.__/|_| |_/_/\_\___|_| |_| |___/ |_| Mon Nov 25 17:53:12 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Mon Nov 25 17:53:12 UTC 2024 I: python-pdbfixer from unstable built successfully and reproducibly on armhf. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-25 17:53:14] INFO: Starting at 2024-11-25 17:53:14.839456 [2024-11-25 17:53:15] INFO: Generating the pages of 1 package(s) [2024-11-25 17:53:16] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/armhf/python-pdbfixer didn't produce a buildlog, even though it has been built. [2024-11-25 17:53:16] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/python-pdbfixer_1.9-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/python-pdbfixer_1.9-4.diff.gz is missing [2024-11-25 17:53:16] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/python-pdbfixer_1.9-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/python-pdbfixer_1.9-4.diff.gz is missing [2024-11-25 17:53:17] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/python-pdbfixer_1.8.1-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/python-pdbfixer_1.8.1-2.diff.gz is missing [2024-11-25 17:53:17] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/python-pdbfixer_1.8.1-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/python-pdbfixer_1.8.1-2.diff.gz is missing [2024-11-25 17:53:17] INFO: Finished at 2024-11-25 17:53:17.212045, took: 0:00:02.372600 Mon Nov 25 17:53:17 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/armhf/python-pdbfixer.html Mon Nov 25 17:53:17 UTC 2024 I: Submitting .buildinfo files to external archives: Mon Nov 25 17:53:17 UTC 2024 I: Submitting 8.0K b1/python-pdbfixer_1.9-4_armhf.buildinfo.asc https://buildinfo.debian.net/d0148249bb89f462ef9ec2be782cba4c68d6037f/python-pdbfixer_1.9-4_all Mon Nov 25 17:53:32 UTC 2024 I: Submitting 8.0K b2/python-pdbfixer_1.9-4_armhf.buildinfo.asc Mon Nov 25 17:54:02 UTC 2024 E: Could not submit buildinfo from b2 to http://buildinfo.debian.net/api/submit Mon Nov 25 17:54:02 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Nov 25 17:54:02 UTC 2024 I: Done submitting .buildinfo files. Mon Nov 25 17:54:02 UTC 2024 I: Removing signed python-pdbfixer_1.9-4_armhf.buildinfo.asc files: removed './b1/python-pdbfixer_1.9-4_armhf.buildinfo.asc' removed './b2/python-pdbfixer_1.9-4_armhf.buildinfo.asc' 1732557242 armhf unstable python-pdbfixer Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/armhf/python-pdbfixer_1.9-4.rbuild.log: 83.5% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/armhf/python-pdbfixer_1.9-4.rbuild.log.gz [2024-11-25 17:54:02] INFO: Starting at 2024-11-25 17:54:02.714767 [2024-11-25 17:54:02] INFO: Generating the pages of 1 package(s) [2024-11-25 17:54:03] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/python-pdbfixer_1.9-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/python-pdbfixer_1.9-4.diff.gz is missing [2024-11-25 17:54:03] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/python-pdbfixer_1.9-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/python-pdbfixer_1.9-4.diff.gz is missing [2024-11-25 17:54:03] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/python-pdbfixer_1.8.1-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/python-pdbfixer_1.8.1-2.diff.gz is missing [2024-11-25 17:54:03] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/python-pdbfixer_1.8.1-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/python-pdbfixer_1.8.1-2.diff.gz is missing [2024-11-25 17:54:03] INFO: Finished at 2024-11-25 17:54:03.350532, took: 0:00:00.635774 All cleanup done. Mon Nov 25 17:54:03 UTC 2024 - total duration: 0h 21m 23s. Mon Nov 25 17:54:03 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-ZkMinmiL, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 22min 14.388s CPU time consumed: 8.557s