Running as unit: rb-build-i386_10-32421.service ==================================================================================== Fri Nov 22 14:32:22 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_i386_10) on jenkins, called using "ionos16-i386 ionos12-i386" as arguments. Fri Nov 22 14:32:22 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-31TDPhT6" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Nov 22 14:32:22 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos16-i386.debian.net is marked as down. Fri Nov 22 14:32:22 UTC 2024 - checking via ssh if ionos16-i386.debian.net is up. removed '/tmp/read-only-fs-test-zMcFNp' Fri Nov 22 14:32:22 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos12-i386.debian.net is marked as down. Fri Nov 22 14:32:22 UTC 2024 - checking via ssh if ionos12-i386.debian.net is up. removed '/tmp/read-only-fs-test-R6SQd4' ok, let's check if parallel-fastq-dump is building anywhere yet… ok, parallel-fastq-dump is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of parallel-fastq-dump in trixie on i386 on jenkins now. 1st build will be done on ionos16-i386.debian.net. 2nd build will be done on ionos12-i386.debian.net. ============================================================================= Fri Nov 22 14:32:44 UTC 2024 I: starting to build parallel-fastq-dump/trixie/i386 on jenkins on '2024-11-22 14:32' Fri Nov 22 14:32:44 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_10/32421/console.log 1732285964 i386 trixie parallel-fastq-dump Fri Nov 22 14:32:44 UTC 2024 I: Downloading source for trixie/parallel-fastq-dump=0.6.7-3 --2024-11-22 14:32:45-- http://deb.debian.org/debian/pool/main/p/parallel-fastq-dump/parallel-fastq-dump_0.6.7-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2141 (2.1K) [text/prs.lines.tag] Saving to: ‘parallel-fastq-dump_0.6.7-3.dsc’ 0K .. 100% 328M=0s 2024-11-22 14:32:45 (328 MB/s) - ‘parallel-fastq-dump_0.6.7-3.dsc’ saved [2141/2141] --2024-11-22 14:32:45-- http://deb.debian.org/debian/pool/main/p/parallel-fastq-dump/parallel-fastq-dump_0.6.7-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2141 (2.1K) [text/prs.lines.tag] Saving to: ‘parallel-fastq-dump_0.6.7-3.dsc’ 0K .. 100% 328M=0s 2024-11-22 14:32:45 (328 MB/s) - ‘parallel-fastq-dump_0.6.7-3.dsc’ saved [2141/2141] Fri Nov 22 14:32:45 UTC 2024 I: parallel-fastq-dump_0.6.7-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: parallel-fastq-dump Binary: parallel-fastq-dump Architecture: any Version: 0.6.7-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/rvalieris/parallel-fastq-dump Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/parallel-fastq-dump Vcs-Git: https://salsa.debian.org/med-team/parallel-fastq-dump.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, sra-toolkit Package-List: parallel-fastq-dump deb science optional arch=any Checksums-Sha1: 2f84683b686881fe817aa7fbd1a0b2358bfe4508 4208 parallel-fastq-dump_0.6.7.orig.tar.gz f3baa817ee82ca672dda9cd5ad5df4e404b90962 3080 parallel-fastq-dump_0.6.7-3.debian.tar.xz Checksums-Sha256: cb33ea0ed0b1123c100aee7b9ea60a3fc3fc81a3a46be5237c85ba56380617de 4208 parallel-fastq-dump_0.6.7.orig.tar.gz b9c66d93be3feaf1ae18f9f1b0389c5daa188ff80272b3eb6598f3b6642f3e94 3080 parallel-fastq-dump_0.6.7-3.debian.tar.xz Files: 2be46eb5b8865bc837bd279d892b29a9 4208 parallel-fastq-dump_0.6.7.orig.tar.gz e2a2e4479401189dde4e81f8792be58d 3080 parallel-fastq-dump_0.6.7-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmJDUlASHG5pbGVzaEBk ZWJpYW4ub3JnAAoJEAC650s0M2nxqIQQAIeI2pf5pHv7d8I20+x1zpMtxNiPIgqd /ALBNe7PioXeZC3fLnFEyEuE+/R2DndrboxE+fi1sMyOhS3EX8tNV8o5mQhxng7l KJE4xRlYAq+HYPgJ2ApCHU5UXS14Uzrf0PPbgl3vOzexr+qI2Rr0NmJ/38NtjMsM B5kVQ/KqzvVqxQUZ7Ii28j4ELzl/JSiBOdKwvQs+gxBVblDg7/GHy+sWJSH1L19n UBVNgnEoElfPv8SzpvaqwGH7iACT7pCqNEg7V5nP+f+WQVkEB+ZY63F8bJP0p9f2 Yc84J8gc06jzktPG6ia0niYVgVAa7YdtofKm0SG/QWAxSY1sUgJM3g+NzW3vmLZo 5aH6Meq5GzQ1GD/JpNlx8AM2l1wBCYrpY3YKgFSfQEH1Ia6/HZ2yE6xVjrCg8TTU efyTT1L/XGhmaaaHRdOdhdxb3g1YY5eBAO6qsNwG3umChMipJmGyh2i+MKaUesE2 3e7vz0d96o1CHPXj9O4NOHYCf2Wai8i1yXtQcvSpnUhh/YWPEdeDefLaPcAv6v0z M5OLrO2Ai96KYUK6n+Bn81xUXdDKAWSJsleEiJPl5n1thouFyKVq3CWPpf7nim3A x+jo9kQO20rEQALV7JL8nrJZqzkKXvYL5fZBuJfII0tFwe/tszqcO5Xbz0p0xY7X I7NFFxRKMAB2 =V+so -----END PGP SIGNATURE----- Fri Nov 22 14:32:45 UTC 2024 I: Checking whether the package is not for us Fri Nov 22 14:32:45 UTC 2024 I: Starting 1st build on remote node ionos16-i386.debian.net. Fri Nov 22 14:32:45 UTC 2024 I: Preparing to do remote build '1' on ionos16-i386.debian.net. Fri Nov 22 14:32:45 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos16-i386.debian.net is marked as down. Fri Nov 22 14:32:45 UTC 2024 - checking via ssh if ionos16-i386.debian.net is up. removed '/tmp/read-only-fs-test-C54WH6' ==================================================================================== Thu Dec 25 20:55:46 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos16-i386, called using "1 parallel-fastq-dump trixie /srv/reproducible-results/rbuild-debian/r-b-build.SqtKI973 0.6.7-3" as arguments. Thu Dec 25 20:55:46 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-FmUSdlzn" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Dec 25 20:55:46 UTC 2025 I: Downloading source for trixie/parallel-fastq-dump=0.6.7-3 Reading package lists... NOTICE: 'parallel-fastq-dump' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/parallel-fastq-dump.git Please use: git clone https://salsa.debian.org/med-team/parallel-fastq-dump.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 9429 B of source archives. Get:1 http://deb.debian.org/debian trixie/main parallel-fastq-dump 0.6.7-3 (dsc) [2141 B] Get:2 http://deb.debian.org/debian trixie/main parallel-fastq-dump 0.6.7-3 (tar) [4208 B] Get:3 http://deb.debian.org/debian trixie/main parallel-fastq-dump 0.6.7-3 (diff) [3080 B] Fetched 9429 B in 0s (360 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'parallel-fastq-dump' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/parallel-fastq-dump.git Please use: git clone https://salsa.debian.org/med-team/parallel-fastq-dump.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 9429 B of source archives. Get:1 http://deb.debian.org/debian trixie/main parallel-fastq-dump 0.6.7-3 (dsc) [2141 B] Get:2 http://deb.debian.org/debian trixie/main parallel-fastq-dump 0.6.7-3 (tar) [4208 B] Get:3 http://deb.debian.org/debian trixie/main parallel-fastq-dump 0.6.7-3 (diff) [3080 B] Fetched 9429 B in 0s (360 kB/s) Download complete and in download only mode ============================================================================= Building parallel-fastq-dump in trixie on i386 on ionos16-i386 now. Date: Thu Dec 25 21:55:46 CET 2025 Date UTC: Thu Dec 25 20:55:46 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Dec 25 08:55:46 -12 2025 I: pbuilder-time-stamp: 1766696146 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [parallel-fastq-dump_0.6.7-3.dsc] I: copying [./parallel-fastq-dump_0.6.7.orig.tar.gz] I: copying [./parallel-fastq-dump_0.6.7-3.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Mar 29 18:39:12 2022 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./parallel-fastq-dump_0.6.7-3.dsc: no acceptable signature found dpkg-source: info: extracting parallel-fastq-dump in parallel-fastq-dump-0.6.7 dpkg-source: info: unpacking parallel-fastq-dump_0.6.7.orig.tar.gz dpkg-source: info: unpacking parallel-fastq-dump_0.6.7-3.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/91687/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='e809b14e261f4b3187811133cd833ffc' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='91687' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.SqtKI973/pbuilderrc_rPqW --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.SqtKI973/b1 --logfile b1/build.log parallel-fastq-dump_0.6.7-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos16-i386 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/91687/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, sra-toolkit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on sra-toolkit; however: Package sra-toolkit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 28.6 MB of archives. After unpacking 110 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: sra-toolkit which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 28.6 MB of archives. After unpacking 110 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/91687 and its subdirectories Starting cleanup. All cleanup done. Thu Dec 25 20:56:02 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-FmUSdlzn, removing. /srv/reproducible-results/rbuild-debian/r-b-build.SqtKI973: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 14:33 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 14:32 b2 -rw-r--r-- 1 jenkins jenkins 2141 Mar 29 2022 parallel-fastq-dump_0.6.7-3.dsc -rw------- 1 jenkins jenkins 3319 Nov 22 14:32 rbuildlog.ZrDDFQE /srv/reproducible-results/rbuild-debian/r-b-build.SqtKI973/b1: total 12 -rw-r--r-- 1 jenkins jenkins 8664 Nov 22 14:33 build.log /srv/reproducible-results/rbuild-debian/r-b-build.SqtKI973/b2: total 0 Fri Nov 22 14:33:02 UTC 2024 I: Deleting $TMPDIR on ionos16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Dec 25 08:55:46 -12 2025 I: pbuilder-time-stamp: 1766696146 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [parallel-fastq-dump_0.6.7-3.dsc] I: copying [./parallel-fastq-dump_0.6.7.orig.tar.gz] I: copying [./parallel-fastq-dump_0.6.7-3.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Mar 29 18:39:12 2022 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./parallel-fastq-dump_0.6.7-3.dsc: no acceptable signature found dpkg-source: info: extracting parallel-fastq-dump in parallel-fastq-dump-0.6.7 dpkg-source: info: unpacking parallel-fastq-dump_0.6.7.orig.tar.gz dpkg-source: info: unpacking parallel-fastq-dump_0.6.7-3.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/91687/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='e809b14e261f4b3187811133cd833ffc' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='91687' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.SqtKI973/pbuilderrc_rPqW --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.SqtKI973/b1 --logfile b1/build.log parallel-fastq-dump_0.6.7-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos16-i386 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/91687/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, sra-toolkit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on sra-toolkit; however: Package sra-toolkit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 28.6 MB of archives. After unpacking 110 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: sra-toolkit which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 28.6 MB of archives. After unpacking 110 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/91687 and its subdirectories parallel-fastq-dump failed to build from source. removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/parallel-fastq-dump_0.6.7-3.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/parallel-fastq-dump_0.6.7-3.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/parallel-fastq-dump_0.6.7-3.build1.log.gz' Fri Nov 22 14:33:03 UTC 2024 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 66.7% -- replaced with stdout Fri Nov 22 14:33:03 UTC 2024 W: Downloading the build dependencies failed Fri Nov 22 14:33:03 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Fri Nov 22 14:33:03 UTC 2024 W: Network problems are automatically rescheduled after some hours. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-22 14:33:04] INFO: Starting at 2024-11-22 14:33:04.211856 [2024-11-22 14:33:04] INFO: Generating the pages of 1 package(s) [2024-11-22 14:33:04] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/parallel-fastq-dump_0.6.7-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/parallel-fastq-dump_0.6.7-3.diff.gz is missing [2024-11-22 14:33:04] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/parallel-fastq-dump_0.6.7-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/parallel-fastq-dump_0.6.7-3.diff.gz is missing [2024-11-22 14:33:04] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/parallel-fastq-dump_0.6.7-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/parallel-fastq-dump_0.6.7-3.diff.gz is missing [2024-11-22 14:33:04] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/i386/parallel-fastq-dump didn't produce a buildlog, even though it has been built. [2024-11-22 14:33:05] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/parallel-fastq-dump_0.6.7-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/parallel-fastq-dump_0.6.7-3.diff.gz is missing [2024-11-22 14:33:05] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/parallel-fastq-dump_0.6.7-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/parallel-fastq-dump_0.6.7-3.diff.gz is missing [2024-11-22 14:33:05] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/parallel-fastq-dump_0.6.6-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/parallel-fastq-dump_0.6.6-3.diff.gz is missing [2024-11-22 14:33:05] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/parallel-fastq-dump_0.6.6-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/parallel-fastq-dump_0.6.6-3.diff.gz is missing [2024-11-22 14:33:05] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/parallel-fastq-dump_0.6.6-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/parallel-fastq-dump_0.6.6-3.diff.gz is missing [2024-11-22 14:33:05] INFO: Finished at 2024-11-22 14:33:05.110103, took: 0:00:00.898252 Fri Nov 22 14:33:05 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/i386/parallel-fastq-dump.html Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/parallel-fastq-dump_0.6.7-3.rbuild.log: 62.5% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/parallel-fastq-dump_0.6.7-3.rbuild.log.gz [2024-11-22 14:33:05] INFO: Starting at 2024-11-22 14:33:05.525529 [2024-11-22 14:33:05] INFO: Generating the pages of 1 package(s) [2024-11-22 14:33:06] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/parallel-fastq-dump_0.6.7-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/parallel-fastq-dump_0.6.7-3.diff.gz is missing [2024-11-22 14:33:06] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/parallel-fastq-dump_0.6.7-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/parallel-fastq-dump_0.6.7-3.diff.gz is missing [2024-11-22 14:33:06] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/parallel-fastq-dump_0.6.7-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/parallel-fastq-dump_0.6.7-3.diff.gz is missing [2024-11-22 14:33:06] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/parallel-fastq-dump_0.6.7-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/parallel-fastq-dump_0.6.7-3.diff.gz is missing [2024-11-22 14:33:06] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/parallel-fastq-dump_0.6.7-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/parallel-fastq-dump_0.6.7-3.diff.gz is missing [2024-11-22 14:33:06] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/parallel-fastq-dump_0.6.7-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/parallel-fastq-dump_0.6.7-3.diff.gz is missing [2024-11-22 14:33:06] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/parallel-fastq-dump_0.6.6-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/parallel-fastq-dump_0.6.6-3.diff.gz is missing [2024-11-22 14:33:06] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/parallel-fastq-dump_0.6.6-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/parallel-fastq-dump_0.6.6-3.diff.gz is missing [2024-11-22 14:33:06] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/parallel-fastq-dump_0.6.6-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/parallel-fastq-dump_0.6.6-3.diff.gz is missing [2024-11-22 14:33:06] INFO: Finished at 2024-11-22 14:33:06.460697, took: 0:00:00.935172 All cleanup done. Fri Nov 22 14:33:06 UTC 2024 - total duration: 0h 0m 41s. Fri Nov 22 14:33:06 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-31TDPhT6, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 44.306s CPU time consumed: 5.878s