Running as unit: rb-build-i386_10-39568.service ==================================================================================== Wed Jan 22 23:31:45 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_i386_10) on jenkins, called using "ionos16-i386 ionos2-i386" as arguments. Wed Jan 22 23:31:45 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-7FSZwsVi" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Jan 22 23:31:45 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos16-i386.debian.net is marked as down. Wed Jan 22 23:31:45 UTC 2025 - checking via ssh if ionos16-i386.debian.net is up. removed '/tmp/read-only-fs-test-0fs8xi' Wed Jan 22 23:31:46 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos2-i386.debian.net is marked as down. Wed Jan 22 23:31:46 UTC 2025 - checking via ssh if ionos2-i386.debian.net is up. removed '/tmp/read-only-fs-test-Noplt4' ok, let's check if r-bioc-tfbstools is building anywhere yet… ok, r-bioc-tfbstools is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of r-bioc-tfbstools in trixie on i386 on jenkins now. 1st build will be done on ionos16-i386.debian.net. 2nd build will be done on ionos2-i386.debian.net. ============================================================================= Wed Jan 22 23:31:51 UTC 2025 I: starting to build r-bioc-tfbstools/trixie/i386 on jenkins on '2025-01-22 23:31' Wed Jan 22 23:31:51 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_10/39568/console.log 1737588711 i386 trixie r-bioc-tfbstools Wed Jan 22 23:31:51 UTC 2025 I: Downloading source for trixie/r-bioc-tfbstools=1.44.0+dfsg-2 --2025-01-22 23:31:51-- http://deb.debian.org/debian/pool/main/r/r-bioc-tfbstools/r-bioc-tfbstools_1.44.0%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2512 (2.5K) [text/prs.lines.tag] Saving to: ‘r-bioc-tfbstools_1.44.0+dfsg-2.dsc’ 0K .. 100% 405M=0s 2025-01-22 23:31:51 (405 MB/s) - ‘r-bioc-tfbstools_1.44.0+dfsg-2.dsc’ saved [2512/2512] --2025-01-22 23:31:51-- http://deb.debian.org/debian/pool/main/r/r-bioc-tfbstools/r-bioc-tfbstools_1.44.0%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2512 (2.5K) [text/prs.lines.tag] Saving to: ‘r-bioc-tfbstools_1.44.0+dfsg-2.dsc’ 0K .. 100% 405M=0s 2025-01-22 23:31:51 (405 MB/s) - ‘r-bioc-tfbstools_1.44.0+dfsg-2.dsc’ saved [2512/2512] Wed Jan 22 23:31:51 UTC 2025 I: r-bioc-tfbstools_1.44.0+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-tfbstools Binary: r-bioc-tfbstools Architecture: any Version: 1.44.0+dfsg-2 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Homepage: https://bioconductor.org/packages/TFBSTools/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-tfbstools Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-tfbstools.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biobase, r-bioc-biostrings, r-bioc-pwalign, r-bioc-biocgenerics, r-bioc-biocparallel, r-bioc-bsgenome, r-cran-catools, r-bioc-cner, r-bioc-dirichletmultinomial, r-bioc-genomeinfodb, r-bioc-genomicranges, r-cran-gtools, r-bioc-iranges, r-cran-dbi, r-cran-rsqlite, r-bioc-rtracklayer, r-bioc-seqlogo, r-bioc-s4vectors, r-cran-tfmpvalue, r-cran-xml, r-bioc-xvector, architecture-is-64-bit Package-List: r-bioc-tfbstools deb gnu-r optional arch=any Checksums-Sha1: aedbcd0a59ea8eaa3104de3ccd96a44e403992cb 120756 r-bioc-tfbstools_1.44.0+dfsg.orig.tar.xz 094fc0c072d09fed66990caea0ff65402d4df65e 4060 r-bioc-tfbstools_1.44.0+dfsg-2.debian.tar.xz Checksums-Sha256: 47f7adb6bf3694651d57024503be07b543855e8424a6bb69ebcc2c9c6bf2986b 120756 r-bioc-tfbstools_1.44.0+dfsg.orig.tar.xz 0c0f30c0daaad0e258e5e64f82a516faba8f1a8b40a5df25352a9a14d4856188 4060 r-bioc-tfbstools_1.44.0+dfsg-2.debian.tar.xz Files: 8b1a85d2c3bfbe031bb1a2536b72f9ab 120756 r-bioc-tfbstools_1.44.0+dfsg.orig.tar.xz 966d81dedf06c24d334b5906abb60a81 4060 r-bioc-tfbstools_1.44.0+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmeFk8sSHGNydXNvZUBk ZWJpYW4ub3JnAAoJEDwmdj9sZ+bijgEP/1pOHO2r9K8wRLSUVSnEpldRt3CNygLi EVOpuREVr31nkmYaAcAvIJ6hEUfCdHI3/hb3RJTmDV5+jIOXVWKtPVyncpBLzVX4 eJ0syv191yULwPra31wpXIRXLNNHztuY0FjAApg9gW3qHKtNHns0iSG9PpsC/mrF tfe6MSifH5nigST1l0/2A33X4Q1tzp9504v/PH9eCdK2LCzsiUlAzgyZZtoiFWgb qos0nhP0zlAkQgKVwR03p/2hCadgB2PJ13jXz848ka4Obi5nPSXa+eVLUnRkYRh5 XrpL91PIi74gtwWlbxsnrBiBsD1SK75ZFnKyJJrpwbYbqu5lpM5ppQLaXNgm+XPU cdhyXQw6sSf3uAWd8T1T1mJy4sAMa3Y8LOqkm5b/tPrhvKj4eovVUendRvPgjo2F v8VqEpwHOrJeFANWBOiLi7GJdl7y9vhvyj9jbzrNBTxrETdgcSLptRdUQt/jrDEN vqU80n9W2vPbVIBTdQQeupCJMgJCLsTRot/f8uPNjV6zt2z3tNGEEcYfx411ydFL Bwph7e+Dvq34nDp/4O//ODyeOKZV8SOd3wAs63o2jAIl6WE95xKK9EzpOoqHzAbr VLXo5em7nfzVh2Yqz/OH9BKnsZActHQQ6A2DIUlnMfat8sNO2Fc7RNgyJBoLcWrY 3ymVcmYkxFx7 =ri+9 -----END PGP SIGNATURE----- Wed Jan 22 23:31:51 UTC 2025 I: Checking whether the package is not for us Wed Jan 22 23:31:51 UTC 2025 I: Starting 1st build on remote node ionos16-i386.debian.net. Wed Jan 22 23:31:51 UTC 2025 I: Preparing to do remote build '1' on ionos16-i386.debian.net. Wed Jan 22 23:31:51 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos16-i386.debian.net is marked as down. Wed Jan 22 23:31:51 UTC 2025 - checking via ssh if ionos16-i386.debian.net is up. removed '/tmp/read-only-fs-test-C8xYjQ' ==================================================================================== Wed Feb 25 05:54:52 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos16-i386, called using "1 r-bioc-tfbstools trixie /srv/reproducible-results/rbuild-debian/r-b-build.eRONZGTl 1.44.0+dfsg-2" as arguments. Wed Feb 25 05:54:52 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-qG1b4PNG" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Feb 25 05:54:53 UTC 2026 I: Downloading source for trixie/r-bioc-tfbstools=1.44.0+dfsg-2 Reading package lists... NOTICE: 'r-bioc-tfbstools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-tfbstools.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-tfbstools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 127 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main r-bioc-tfbstools 1.44.0+dfsg-2 (dsc) [2512 B] Get:2 http://deb.debian.org/debian trixie/main r-bioc-tfbstools 1.44.0+dfsg-2 (tar) [121 kB] Get:3 http://deb.debian.org/debian trixie/main r-bioc-tfbstools 1.44.0+dfsg-2 (diff) [4060 B] Fetched 127 kB in 0s (2021 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'r-bioc-tfbstools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-tfbstools.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-tfbstools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 127 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main r-bioc-tfbstools 1.44.0+dfsg-2 (dsc) [2512 B] Get:2 http://deb.debian.org/debian trixie/main r-bioc-tfbstools 1.44.0+dfsg-2 (tar) [121 kB] Get:3 http://deb.debian.org/debian trixie/main r-bioc-tfbstools 1.44.0+dfsg-2 (diff) [4060 B] Fetched 127 kB in 0s (2021 kB/s) Download complete and in download only mode ============================================================================= Building r-bioc-tfbstools in trixie on i386 on ionos16-i386 now. Date: Wed Feb 25 06:54:54 CET 2026 Date UTC: Wed Feb 25 05:54:54 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Tue Feb 24 17:54:54 -12 2026 I: pbuilder-time-stamp: 1771998894 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [r-bioc-tfbstools_1.44.0+dfsg-2.dsc] I: copying [./r-bioc-tfbstools_1.44.0+dfsg.orig.tar.xz] I: copying [./r-bioc-tfbstools_1.44.0+dfsg-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./r-bioc-tfbstools_1.44.0+dfsg-2.dsc: unsupported subcommand dpkg-source: info: extracting r-bioc-tfbstools in r-bioc-tfbstools-1.44.0+dfsg dpkg-source: info: unpacking r-bioc-tfbstools_1.44.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-tfbstools_1.44.0+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Fix_autopkgtest.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/17108/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='00bdf5827cab43ca83672b9a947dd6ef' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='17108' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eRONZGTl/pbuilderrc_YODV --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eRONZGTl/b1 --logfile b1/build.log r-bioc-tfbstools_1.44.0+dfsg-2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos16-i386 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/17108/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biobase, r-bioc-biostrings, r-bioc-pwalign, r-bioc-biocgenerics, r-bioc-biocparallel, r-bioc-bsgenome, r-cran-catools, r-bioc-cner, r-bioc-dirichletmultinomial, r-bioc-genomeinfodb, r-bioc-genomicranges, r-cran-gtools, r-bioc-iranges, r-cran-dbi, r-cran-rsqlite, r-bioc-rtracklayer, r-bioc-seqlogo, r-bioc-s4vectors, r-cran-tfmpvalue, r-cran-xml, r-bioc-xvector, architecture-is-64-bit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19842 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biobase; however: Package r-bioc-biobase is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biostrings; however: Package r-bioc-biostrings is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-pwalign; however: Package r-bioc-pwalign is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics; however: Package r-bioc-biocgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocparallel; however: Package r-bioc-biocparallel is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-bsgenome; however: Package r-bioc-bsgenome is not installed. pbuilder-satisfydepends-dummy depends on r-cran-catools; however: Package r-cran-catools is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-cner; however: Package r-bioc-cner is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-dirichletmultinomial; however: Package r-bioc-dirichletmultinomial is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomeinfodb; however: Package r-bioc-genomeinfodb is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicranges; however: Package r-bioc-genomicranges is not installed. pbuilder-satisfydepends-dummy depends on r-cran-gtools; however: Package r-cran-gtools is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-iranges; however: Package r-bioc-iranges is not installed. pbuilder-satisfydepends-dummy depends on r-cran-dbi; however: Package r-cran-dbi is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rsqlite; however: Package r-cran-rsqlite is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rtracklayer; however: Package r-bioc-rtracklayer is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-seqlogo; however: Package r-bioc-seqlogo is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors; however: Package r-bioc-s4vectors is not installed. pbuilder-satisfydepends-dummy depends on r-cran-tfmpvalue; however: Package r-cran-tfmpvalue is not installed. pbuilder-satisfydepends-dummy depends on r-cran-xml; however: Package r-cran-xml is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-xvector; however: Package r-bioc-xvector is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libidn2-0{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap2{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper2{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtasn1-6{a} libtcl8.6{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} littler{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} r-base-core{a} r-base-dev{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-s4vectors{a} r-bioc-seqlogo{a} r-cran-bit{a} r-cran-bit64{a} r-cran-bitops{a} r-cran-blob{a} r-cran-cachem{a} r-cran-catools{a} r-cran-cli{a} r-cran-cpp11{a} r-cran-dbi{a} r-cran-fastmap{a} r-cran-glue{a} r-cran-gtools{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-memoise{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plogr{a} r-cran-rcpp{a} r-cran-rlang{a} r-cran-rsqlite{a} r-cran-tfmpvalue{a} r-cran-vctrs{a} r-cran-xml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl linux-sysctl-defaults lynx psmisc publicsuffix r-cran-bench r-cran-brio r-cran-callr r-cran-covr r-cran-crayon r-cran-dbitest r-cran-decor r-cran-desc r-cran-digest r-cran-dplyr r-cran-fs r-cran-generics r-cran-gert r-cran-ggplot2 r-cran-gh r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-knitr r-cran-lintr r-cran-lobstr r-cran-magrittr r-cran-mockery r-cran-pillar r-cran-pkgdown r-cran-processx r-cran-progress r-cran-ps r-cran-rmarkdown r-cran-rprojroot r-cran-rstudioapi r-cran-rvest r-cran-scales r-cran-testthat r-cran-tibble r-cran-tidyverse r-cran-usethis r-cran-waldo r-cran-whoami r-cran-withr r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 224 newly installed, 0 to remove and 0 not upgraded. Need to get 127 MB of archives. After unpacking 370 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: r-bioc-biostrings which is a virtual package and is not provided by any available package Depends: r-bioc-pwalign which is a virtual package and is not provided by any available package Depends: r-bioc-biocparallel which is a virtual package and is not provided by any available package Depends: r-bioc-bsgenome but it is not installable Depends: r-bioc-cner which is a virtual package and is not provided by any available package Depends: r-bioc-dirichletmultinomial which is a virtual package and is not provided by any available package Depends: r-bioc-genomeinfodb but it is not installable Depends: r-bioc-genomicranges which is a virtual package and is not provided by any available package Depends: r-bioc-iranges which is a virtual package and is not provided by any available package Depends: r-bioc-rtracklayer which is a virtual package and is not provided by any available package Depends: r-bioc-xvector which is a virtual package and is not provided by any available package Depends: architecture-is-64-bit which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libidn2-0{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap2{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper2{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtasn1-6{a} libtcl8.6{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} littler{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} r-base-core{a} r-base-dev{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-s4vectors{a} r-bioc-seqlogo{a} r-cran-bit{a} r-cran-bit64{a} r-cran-bitops{a} r-cran-blob{a} r-cran-cachem{a} r-cran-catools{a} r-cran-cli{a} r-cran-cpp11{a} r-cran-dbi{a} r-cran-fastmap{a} r-cran-glue{a} r-cran-gtools{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-memoise{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plogr{a} r-cran-rcpp{a} r-cran-rlang{a} r-cran-rsqlite{a} r-cran-tfmpvalue{a} r-cran-vctrs{a} r-cran-xml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl linux-sysctl-defaults lynx psmisc publicsuffix r-cran-bench r-cran-brio r-cran-callr r-cran-covr r-cran-crayon r-cran-dbitest r-cran-decor r-cran-desc r-cran-digest r-cran-dplyr r-cran-fs r-cran-generics r-cran-gert r-cran-ggplot2 r-cran-gh r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-knitr r-cran-lintr r-cran-lobstr r-cran-magrittr r-cran-mockery r-cran-pillar r-cran-pkgdown r-cran-processx r-cran-progress r-cran-ps r-cran-rmarkdown r-cran-rprojroot r-cran-rstudioapi r-cran-rvest r-cran-scales r-cran-testthat r-cran-tibble r-cran-tidyverse r-cran-usethis r-cran-waldo r-cran-whoami r-cran-withr r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 224 newly installed, 0 to remove and 0 not upgraded. Need to get 127 MB of archives. After unpacking 370 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/17108 and its subdirectories Starting cleanup. All cleanup done. Wed Feb 25 05:55:23 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-qG1b4PNG, removing. /srv/reproducible-results/rbuild-debian/r-b-build.eRONZGTl: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Jan 22 23:32 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jan 22 23:31 b2 -rw-r--r-- 1 jenkins jenkins 2512 Jan 13 22:32 r-bioc-tfbstools_1.44.0+dfsg-2.dsc -rw------- 1 jenkins jenkins 3701 Jan 22 23:31 rbuildlog.nVnrfeK /srv/reproducible-results/rbuild-debian/r-b-build.eRONZGTl/b1: total 20 -rw-r--r-- 1 jenkins jenkins 20295 Jan 22 23:32 build.log /srv/reproducible-results/rbuild-debian/r-b-build.eRONZGTl/b2: total 0 Wed Jan 22 23:32:24 UTC 2025 I: Deleting $TMPDIR on ionos16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Feb 24 17:54:54 -12 2026 I: pbuilder-time-stamp: 1771998894 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [r-bioc-tfbstools_1.44.0+dfsg-2.dsc] I: copying [./r-bioc-tfbstools_1.44.0+dfsg.orig.tar.xz] I: copying [./r-bioc-tfbstools_1.44.0+dfsg-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./r-bioc-tfbstools_1.44.0+dfsg-2.dsc: unsupported subcommand dpkg-source: info: extracting r-bioc-tfbstools in r-bioc-tfbstools-1.44.0+dfsg dpkg-source: info: unpacking r-bioc-tfbstools_1.44.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-tfbstools_1.44.0+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Fix_autopkgtest.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/17108/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='00bdf5827cab43ca83672b9a947dd6ef' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='17108' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eRONZGTl/pbuilderrc_YODV --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eRONZGTl/b1 --logfile b1/build.log r-bioc-tfbstools_1.44.0+dfsg-2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos16-i386 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/17108/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biobase, r-bioc-biostrings, r-bioc-pwalign, r-bioc-biocgenerics, r-bioc-biocparallel, r-bioc-bsgenome, r-cran-catools, r-bioc-cner, r-bioc-dirichletmultinomial, r-bioc-genomeinfodb, r-bioc-genomicranges, r-cran-gtools, r-bioc-iranges, r-cran-dbi, r-cran-rsqlite, r-bioc-rtracklayer, r-bioc-seqlogo, r-bioc-s4vectors, r-cran-tfmpvalue, r-cran-xml, r-bioc-xvector, architecture-is-64-bit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19842 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biobase; however: Package r-bioc-biobase is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biostrings; however: Package r-bioc-biostrings is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-pwalign; however: Package r-bioc-pwalign is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics; however: Package r-bioc-biocgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocparallel; however: Package r-bioc-biocparallel is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-bsgenome; however: Package r-bioc-bsgenome is not installed. pbuilder-satisfydepends-dummy depends on r-cran-catools; however: Package r-cran-catools is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-cner; however: Package r-bioc-cner is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-dirichletmultinomial; however: Package r-bioc-dirichletmultinomial is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomeinfodb; however: Package r-bioc-genomeinfodb is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicranges; however: Package r-bioc-genomicranges is not installed. pbuilder-satisfydepends-dummy depends on r-cran-gtools; however: Package r-cran-gtools is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-iranges; however: Package r-bioc-iranges is not installed. pbuilder-satisfydepends-dummy depends on r-cran-dbi; however: Package r-cran-dbi is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rsqlite; however: Package r-cran-rsqlite is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rtracklayer; however: Package r-bioc-rtracklayer is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-seqlogo; however: Package r-bioc-seqlogo is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors; however: Package r-bioc-s4vectors is not installed. pbuilder-satisfydepends-dummy depends on r-cran-tfmpvalue; however: Package r-cran-tfmpvalue is not installed. pbuilder-satisfydepends-dummy depends on r-cran-xml; however: Package r-cran-xml is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-xvector; however: Package r-bioc-xvector is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libidn2-0{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap2{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper2{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtasn1-6{a} libtcl8.6{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} littler{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} r-base-core{a} r-base-dev{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-s4vectors{a} r-bioc-seqlogo{a} r-cran-bit{a} r-cran-bit64{a} r-cran-bitops{a} r-cran-blob{a} r-cran-cachem{a} r-cran-catools{a} r-cran-cli{a} r-cran-cpp11{a} r-cran-dbi{a} r-cran-fastmap{a} r-cran-glue{a} r-cran-gtools{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-memoise{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plogr{a} r-cran-rcpp{a} r-cran-rlang{a} r-cran-rsqlite{a} r-cran-tfmpvalue{a} r-cran-vctrs{a} r-cran-xml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl linux-sysctl-defaults lynx psmisc publicsuffix r-cran-bench r-cran-brio r-cran-callr r-cran-covr r-cran-crayon r-cran-dbitest r-cran-decor r-cran-desc r-cran-digest r-cran-dplyr r-cran-fs r-cran-generics r-cran-gert r-cran-ggplot2 r-cran-gh r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-knitr r-cran-lintr r-cran-lobstr r-cran-magrittr r-cran-mockery r-cran-pillar r-cran-pkgdown r-cran-processx r-cran-progress r-cran-ps r-cran-rmarkdown r-cran-rprojroot r-cran-rstudioapi r-cran-rvest r-cran-scales r-cran-testthat r-cran-tibble r-cran-tidyverse r-cran-usethis r-cran-waldo r-cran-whoami r-cran-withr r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 224 newly installed, 0 to remove and 0 not upgraded. Need to get 127 MB of archives. After unpacking 370 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: r-bioc-biostrings which is a virtual package and is not provided by any available package Depends: r-bioc-pwalign which is a virtual package and is not provided by any available package Depends: r-bioc-biocparallel which is a virtual package and is not provided by any available package Depends: r-bioc-bsgenome but it is not installable Depends: r-bioc-cner which is a virtual package and is not provided by any available package Depends: r-bioc-dirichletmultinomial which is a virtual package and is not provided by any available package Depends: r-bioc-genomeinfodb but it is not installable Depends: r-bioc-genomicranges which is a virtual package and is not provided by any available package Depends: r-bioc-iranges which is a virtual package and is not provided by any available package Depends: r-bioc-rtracklayer which is a virtual package and is not provided by any available package Depends: r-bioc-xvector which is a virtual package and is not provided by any available package Depends: architecture-is-64-bit which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libidn2-0{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap2{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper2{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtasn1-6{a} libtcl8.6{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunistring5{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} littler{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} r-base-core{a} r-base-dev{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-s4vectors{a} r-bioc-seqlogo{a} r-cran-bit{a} r-cran-bit64{a} r-cran-bitops{a} r-cran-blob{a} r-cran-cachem{a} r-cran-catools{a} r-cran-cli{a} r-cran-cpp11{a} r-cran-dbi{a} r-cran-fastmap{a} r-cran-glue{a} r-cran-gtools{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-memoise{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plogr{a} r-cran-rcpp{a} r-cran-rlang{a} r-cran-rsqlite{a} r-cran-tfmpvalue{a} r-cran-vctrs{a} r-cran-xml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl linux-sysctl-defaults lynx psmisc publicsuffix r-cran-bench r-cran-brio r-cran-callr r-cran-covr r-cran-crayon r-cran-dbitest r-cran-decor r-cran-desc r-cran-digest r-cran-dplyr r-cran-fs r-cran-generics r-cran-gert r-cran-ggplot2 r-cran-gh r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-knitr r-cran-lintr r-cran-lobstr r-cran-magrittr r-cran-mockery r-cran-pillar r-cran-pkgdown r-cran-processx r-cran-progress r-cran-ps r-cran-rmarkdown r-cran-rprojroot r-cran-rstudioapi r-cran-rvest r-cran-scales r-cran-testthat r-cran-tibble r-cran-tidyverse r-cran-usethis r-cran-waldo r-cran-whoami r-cran-withr r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 224 newly installed, 0 to remove and 0 not upgraded. Need to get 127 MB of archives. After unpacking 370 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/17108 and its subdirectories r-bioc-tfbstools failed to build from source. Wed Jan 22 23:32:25 UTC 2025 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 77.5% -- replaced with stdout Wed Jan 22 23:32:25 UTC 2025 W: Downloading the build dependencies failed Wed Jan 22 23:32:25 UTC 2025 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Wed Jan 22 23:32:25 UTC 2025 W: Network problems are automatically rescheduled after some hours. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-01-22 23:32:26] INFO: Starting at 2025-01-22 23:32:26.101602 [2025-01-22 23:32:26] INFO: Generating the pages of 1 package(s) [2025-01-22 23:32:26] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/r-bioc-tfbstools_1.44.0+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/r-bioc-tfbstools_1.44.0+dfsg-2.diff.gz is missing [2025-01-22 23:32:26] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/r-bioc-tfbstools_1.44.0+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/r-bioc-tfbstools_1.44.0+dfsg-2.diff.gz is missing [2025-01-22 23:32:26] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/i386/r-bioc-tfbstools didn't produce a buildlog, even though it has been built. [2025-01-22 23:32:26] INFO: Finished at 2025-01-22 23:32:26.499242, took: 0:00:00.397646 Wed Jan 22 23:32:26 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/i386/r-bioc-tfbstools.html Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/r-bioc-tfbstools_1.44.0+dfsg-2.rbuild.log: 73.8% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/r-bioc-tfbstools_1.44.0+dfsg-2.rbuild.log.gz [2025-01-22 23:32:26] INFO: Starting at 2025-01-22 23:32:26.872943 [2025-01-22 23:32:26] INFO: Generating the pages of 1 package(s) [2025-01-22 23:32:27] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/r-bioc-tfbstools_1.44.0+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/r-bioc-tfbstools_1.44.0+dfsg-2.diff.gz is missing [2025-01-22 23:32:27] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/r-bioc-tfbstools_1.44.0+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/r-bioc-tfbstools_1.44.0+dfsg-2.diff.gz is missing [2025-01-22 23:32:27] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/r-bioc-tfbstools_1.44.0+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/r-bioc-tfbstools_1.44.0+dfsg-2.diff.gz is missing [2025-01-22 23:32:27] INFO: Finished at 2025-01-22 23:32:27.312661, took: 0:00:00.439724 All cleanup done. Wed Jan 22 23:32:27 UTC 2025 - total duration: 0h 0m 40s. Wed Jan 22 23:32:27 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-7FSZwsVi, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 41.666s CPU time consumed: 4.699s