Running as unit: rb-build-i386_10-46240.service ==================================================================================== Mon Mar 10 07:03:04 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_i386_10) on jenkins, called using "ionos16-i386 ionos2-i386" as arguments. Mon Mar 10 07:03:04 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-uACX94ql" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Mar 10 07:03:04 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos16-i386.debian.net is marked as down. Mon Mar 10 07:03:04 UTC 2025 - checking via ssh if ionos16-i386.debian.net is up. removed '/tmp/read-only-fs-test-ryu2s9' Mon Mar 10 07:03:04 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos2-i386.debian.net is marked as down. Mon Mar 10 07:03:04 UTC 2025 - checking via ssh if ionos2-i386.debian.net is up. removed '/tmp/read-only-fs-test-S9LUDW' ok, let's check if python-bioregistry is building anywhere yet… ok, python-bioregistry is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of python-bioregistry in trixie on i386 on jenkins now. 1st build will be done on ionos16-i386.debian.net. 2nd build will be done on ionos2-i386.debian.net. ============================================================================= Mon Mar 10 07:03:24 UTC 2025 I: starting to build python-bioregistry/trixie/i386 on jenkins on '2025-03-10 07:03' Mon Mar 10 07:03:24 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_10/46240/console.log 1741590204 i386 trixie python-bioregistry Mon Mar 10 07:03:24 UTC 2025 I: Downloading source for trixie/python-bioregistry=0.11.12-3 --2025-03-10 07:03:25-- http://deb.debian.org/debian/pool/main/p/python-bioregistry/python-bioregistry_0.11.12-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2627 (2.6K) [text/prs.lines.tag] Saving to: ‘python-bioregistry_0.11.12-3.dsc’ 0K .. 100% 229M=0s 2025-03-10 07:03:25 (229 MB/s) - ‘python-bioregistry_0.11.12-3.dsc’ saved [2627/2627] --2025-03-10 07:03:25-- http://deb.debian.org/debian/pool/main/p/python-bioregistry/python-bioregistry_0.11.12-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2627 (2.6K) [text/prs.lines.tag] Saving to: ‘python-bioregistry_0.11.12-3.dsc’ 0K .. 100% 229M=0s 2025-03-10 07:03:25 (229 MB/s) - ‘python-bioregistry_0.11.12-3.dsc’ saved [2627/2627] Mon Mar 10 07:03:25 UTC 2025 I: python-bioregistry_0.11.12-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-bioregistry Binary: python3-bioregistry Architecture: all Version: 0.11.12-3 Maintainer: Debian Med Packaging Team Uploaders: Alexandre Detiste , Homepage: https://bioregistry.io/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/bioregistry Vcs-Git: https://salsa.debian.org/med-team/bioregistry.git Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all, python3-bs4 , python3-click , python3-curies , python3-defusedxml , python3-fastapi , python3-flask-bootstrap , python3-httpx , python3-markdown , python3-more-itertools , python3-pandas , python3-pydantic , python3-pystow, python3-pytest , python3-rdflib , python3-rdflib-endpoint , python3-setuptools, python3-tabulate , python3-tqdm , python3-yaml Package-List: python3-bioregistry deb python optional arch=all Checksums-Sha1: 2a8f5269a839b037e7f0c321677b2271618c85ea 5989328 python-bioregistry_0.11.12.orig.tar.gz 63fdbd885eff7b5c299bee29a20c6b4bda945325 7760 python-bioregistry_0.11.12-3.debian.tar.xz Checksums-Sha256: e93b317d9e0e864c1f7719ca878890fd485e47e0af41e750e36a2c4ea7388c7c 5989328 python-bioregistry_0.11.12.orig.tar.gz fd8ba2d0ea805ef9fd8d8f39883673858909ec5af544ea1c66a22b3838e60ade 7760 python-bioregistry_0.11.12-3.debian.tar.xz Files: 1a4a59b870fcadb106a7391e7ddd2a6d 5989328 python-bioregistry_0.11.12.orig.tar.gz 5990ace29827a44c018ba01a315a8283 7760 python-bioregistry_0.11.12-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmbhduARHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBrIVw/7BSJnz4VHFoO7c/XAcSZq35O62lDZT9yD hjxON6zHautT+uBKnzys8Qe1hbvfxo5rx0PhCKdQbAfWt4ZFZ5m5agSoMDX7ZSRv fMqoC4iSaaeyW+MrIQwD+eP0G0MAI+fjGSOqN389tg/E+AAlvN0lAJKq+AnHgPhC RDkhJJlFPAyVbQiPQGJVc1zdzGpj+mOXaX56Qg9dwi26kKM7u7/mJjm0X6s/HJAZ RI4RcVJqKmaMhEsgUIhlt4FJNEN9gJ9OX4hOo8rbQxMB1wXoGSHBtWRkHMSt9HHC TgY8wOZS7zd72ywVbORoSXBzZdfNmrj+9hjNqGmC/3J0PenX0FA88Xhr2MILlw5f 4Y1QWgrUcfm4V3nj5QUOF1BBhrqSW+Y71lqFHdTauztTtAKW9WtrFkVJpRLszG6X 12r9ZL0t6bhdYMCUzaKM4f7endmwMaIUnjqPL0V5e/ofSkOwxN48aXscMnRA1pM4 IxkXqfapzjQJiOuS0Ia+bf8VLJC7yTrz47ysos1Io6n54Xx7ZEapl41lQjw/+Qbi d2vxIQPmQLNK+FVYCX5ZXVQ+fJK2gq3ZakvSJpUoP8gzhEs7QII17PgbBXtQvspS L4xU/kB4+142V2JoHDQvFBoQ6YD+sGfNs0eANILM8FdYXL8nvD1LMGnEVk7OErgs dnuAod/Dywg= =qhzq -----END PGP SIGNATURE----- Mon Mar 10 07:03:25 UTC 2025 I: Checking whether the package is not for us Mon Mar 10 07:03:25 UTC 2025 I: Starting 1st build on remote node ionos16-i386.debian.net. Mon Mar 10 07:03:25 UTC 2025 I: Preparing to do remote build '1' on ionos16-i386.debian.net. Mon Mar 10 07:03:25 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos16-i386.debian.net is marked as down. Mon Mar 10 07:03:25 UTC 2025 - checking via ssh if ionos16-i386.debian.net is up. removed '/tmp/read-only-fs-test-RzFWHu' ==================================================================================== Sun Apr 12 13:26:21 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos16-i386, called using "1 python-bioregistry trixie /srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22 0.11.12-3" as arguments. Sun Apr 12 13:26:21 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-ow5uYvRW" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Apr 12 13:26:21 UTC 2026 I: Downloading source for trixie/python-bioregistry=0.11.12-3 Reading package lists... NOTICE: 'python-bioregistry' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/bioregistry.git Please use: git clone https://salsa.debian.org/med-team/bioregistry.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 6000 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main python-bioregistry 0.11.12-3 (dsc) [2627 B] Get:2 http://deb.debian.org/debian trixie/main python-bioregistry 0.11.12-3 (tar) [5989 kB] Get:3 http://deb.debian.org/debian trixie/main python-bioregistry 0.11.12-3 (diff) [7760 B] Fetched 6000 kB in 0s (29.6 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'python-bioregistry' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/bioregistry.git Please use: git clone https://salsa.debian.org/med-team/bioregistry.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 6000 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main python-bioregistry 0.11.12-3 (dsc) [2627 B] Get:2 http://deb.debian.org/debian trixie/main python-bioregistry 0.11.12-3 (tar) [5989 kB] Get:3 http://deb.debian.org/debian trixie/main python-bioregistry 0.11.12-3 (diff) [7760 B] Fetched 6000 kB in 0s (29.6 MB/s) Download complete and in download only mode ============================================================================= Building python-bioregistry in trixie on i386 on ionos16-i386 now. Date: Sun Apr 12 15:26:22 CEST 2026 Date UTC: Sun Apr 12 13:26:22 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Apr 12 01:26:22 -12 2026 I: pbuilder-time-stamp: 1776000382 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [python-bioregistry_0.11.12-3.dsc] I: copying [./python-bioregistry_0.11.12.orig.tar.gz] I: copying [./python-bioregistry_0.11.12-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-bioregistry_0.11.12-3.dsc: unsupported subcommand dpkg-source: info: extracting python-bioregistry in python-bioregistry-0.11.12 dpkg-source: info: unpacking python-bioregistry_0.11.12.orig.tar.gz dpkg-source: info: unpacking python-bioregistry_0.11.12-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying privacy-breach.patch dpkg-source: info: applying vendor_more_click.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/43544/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='9d47ecf4f95243839a890a0f1a572362' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='43544' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22/pbuilderrc_6ZGZ --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22/b1 --logfile b1/build.log python-bioregistry_0.11.12-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos16-i386 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/43544/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all, python3-bs4, python3-click, python3-curies, python3-defusedxml, python3-fastapi, python3-flask-bootstrap, python3-httpx, python3-markdown, python3-more-itertools, python3-pandas, python3-pydantic, python3-pystow, python3-pytest, python3-rdflib, python3-rdflib-endpoint, python3-setuptools, python3-tabulate, python3-tqdm, python3-yaml dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19787 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-bs4; however: Package python3-bs4 is not installed. pbuilder-satisfydepends-dummy depends on python3-click; however: Package python3-click is not installed. pbuilder-satisfydepends-dummy depends on python3-curies; however: Package python3-curies is not installed. pbuilder-satisfydepends-dummy depends on python3-defusedxml; however: Package python3-defusedxml is not installed. pbuilder-satisfydepends-dummy depends on python3-fastapi; however: Package python3-fastapi is not installed. pbuilder-satisfydepends-dummy depends on python3-flask-bootstrap; however: Package python3-flask-bootstrap is not installed. pbuilder-satisfydepends-dummy depends on python3-httpx; however: Package python3-httpx is not installed. pbuilder-satisfydepends-dummy depends on python3-markdown; however: Package python3-markdown is not installed. pbuilder-satisfydepends-dummy depends on python3-more-itertools; however: Package python3-more-itertools is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pydantic; however: Package python3-pydantic is not installed. pbuilder-satisfydepends-dummy depends on python3-pystow; however: Package python3-pystow is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-rdflib; however: Package python3-rdflib is not installed. pbuilder-satisfydepends-dummy depends on python3-rdflib-endpoint; however: Package python3-rdflib-endpoint is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-tabulate; however: Package python3-tabulate is not installed. pbuilder-satisfydepends-dummy depends on python3-tqdm; however: Package python3-tqdm is not installed. pbuilder-satisfydepends-dummy depends on python3-yaml; however: Package python3-yaml is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu72{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a} python3-annotated-types{a} python3-anyio{a} python3-autocommand{a} python3-blinker{a} python3-bs4{a} python3-build{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-curies{a} python3-dateutil{a} python3-defusedxml{a} python3-dnspython{a} python3-email-validator{a} python3-fastapi{a} python3-flask{a} python3-flask-bootstrap{a} python3-h11{a} python3-httpcore{a} python3-httpx{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-itsdangerous{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-markdown{a} python3-markdown-it{a} python3-markupsafe{a} python3-mdurl{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-pluggy{a} python3-pydantic{a} python3-pydantic-core{a} python3-pygments{a} python3-pyparsing{a} python3-pyproject-hooks{a} python3-pystow{a} python3-pytest{a} python3-pytz{a} python3-rdflib{a} python3-rdflib-endpoint{a} python3-requests{a} python3-rich{a} python3-setuptools{a} python3-sniffio{a} python3-sortedcontainers{a} python3-soupsieve{a} python3-starlette{a} python3-tabulate{a} python3-toml{a} python3-tqdm{a} python3-trie{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-urllib3{a} python3-uvicorn{a} python3-uvloop{a} python3-werkzeug{a} python3-wheel{a} python3-wsproto{a} python3-wtforms{a} python3-yaml{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-aiofiles python3-asgiref python3-babel python3-bottleneck python3-cryptography python3-dotenv python3-h2 python3-html5lib python3-html5rdf python3-lxml python3-matplotlib python3-networkx python3-numexpr python3-odf python3-openpyxl python3-openssl python3-orjson python3-pyinotify python3-python-multipart python3-scipy python3-tables wget 0 packages upgraded, 129 newly installed, 0 to remove and 0 not upgraded. Need to get 54.6 MB of archives. After unpacking 263 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 libpython3.13-minimal i386 3.13.2-1 [859 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.4-1 [107 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 python3.13-minimal i386 3.13.2-1 [2266 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.13.2-1 [27.1 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 media-types all 12.0.0 [28.9 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 tzdata all 2025a-2 [259 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 libffi8 i386 3.4.7-1 [21.4 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 libreadline8t64 i386 8.2-6 [173 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libpython3.13-stdlib i386 3.13.2-1 [1985 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 python3.13 i386 3.13.2-1 [745 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.13.2-1 [10.0 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 python3 i386 3.13.2-1 [28.1 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 python3-numpy-dev i386 1:2.2.3+ds-2+b1 [145 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libblas3 i386 3.12.1-2 [150 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 libgfortran5 i386 14.2.0-17 [735 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 liblapack3 i386 3.12.1-2 [2198 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 python3-numpy i386 1:2.2.3+ds-2+b1 [5060 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 openssl i386 3.4.1-1 [1432 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 ca-certificates all 20241223 [164 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.23.1-1 [245 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-7 [1199 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.4-5 [96.5 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-7 [301 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 automake all 1:1.17-3 [862 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 autopoint all 0.23.1-1 [770 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 libtool all 2.5.4-4 [539 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 43 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 libunistring5 i386 1.3-1 [458 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-6 [9582 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b2 [734 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 gettext i386 0.23.1-1 [1714 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 debhelper all 13.24.1 [920 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 python3-inflect all 7.3.1-2 [32.4 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 58 http://deb.debian.org/debian trixie/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 python3-pkg-resources all 75.8.0-1 [222 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 python3-zipp all 3.21.0-1 [10.6 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 python3-setuptools all 75.8.0-1 [724 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 dh-python all 6.20250108 [113 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 libuv1t64 i386 1.50.0-2 [163 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 libyaml-0-2 i386 0.2.5-2 [55.8 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 python3-packaging all 24.2-1 [55.3 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 python3-toml all 0.10.2-1 [16.2 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 python3-wheel all 0.45.1-1 [56.7 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 python3-build all 1.2.2-1 [36.0 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 pybuild-plugin-pyproject all 6.20250108 [11.6 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 python3-all i386 3.13.2-1 [1048 B] Get: 74 http://deb.debian.org/debian trixie/main i386 python3-annotated-types all 0.7.0-1 [18.8 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 python3-idna all 3.10-1 [42.0 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 python3-sniffio all 1.3.1-1 [7120 B] Get: 77 http://deb.debian.org/debian trixie/main i386 python3-anyio all 4.7.0-1 [61.8 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 python3-blinker all 1.9.0-1 [12.6 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 python3-soupsieve all 2.6-1 [38.3 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 python3-bs4 all 4.13.3-1 [166 kB] Get: 81 http://deb.debian.org/debian trixie/main i386 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 82 http://deb.debian.org/debian trixie/main i386 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 python3-charset-normalizer i386 3.4.1-1+b1 [127 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 python3-click all 8.2.0+0.really.8.1.8-1 [95.4 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 python3-pydantic-core i386 2.27.2-1+b2 [1454 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 python3-dnspython all 2.7.0-1 [164 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 python3-email-validator all 2.2.0-1 [31.6 kB] Get: 88 http://deb.debian.org/debian trixie/main i386 python3-pydantic i386 2.10.6-1 [346 kB] Get: 89 http://deb.debian.org/debian trixie/main i386 python3-sortedcontainers all 2.4.0-2 [31.9 kB] Get: 90 http://deb.debian.org/debian trixie/main i386 python3-trie all 0.4.0+ds-1 [7640 B] Get: 91 http://deb.debian.org/debian trixie/main i386 python3-curies all 0.9.0-1 [38.3 kB] Get: 92 http://deb.debian.org/debian trixie/main i386 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 93 http://deb.debian.org/debian trixie/main i386 python3-defusedxml all 0.7.1-3 [43.4 kB] Get: 94 http://deb.debian.org/debian trixie/main i386 python3-starlette all 0.41.3-2 [51.2 kB] Get: 95 http://deb.debian.org/debian trixie/main i386 python3-h11 all 0.14.0-1 [50.1 kB] Get: 96 http://deb.debian.org/debian trixie/main i386 python3-wsproto all 1.2.0-1 [25.4 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 python3-uvloop i386 0.21.0+ds1-2+b1 [564 kB] Get: 98 http://deb.debian.org/debian trixie/main i386 python3-uvicorn all 0.32.0-2 [50.8 kB] Get: 99 http://deb.debian.org/debian trixie/main i386 python3-fastapi all 0.115.11-3 [73.4 kB] Get: 100 http://deb.debian.org/debian trixie/main i386 python3-itsdangerous all 2.2.0-2 [18.1 kB] Get: 101 http://deb.debian.org/debian trixie/main i386 python3-markupsafe i386 2.1.5-1+b3 [14.0 kB] Get: 102 http://deb.debian.org/debian trixie/main i386 python3-jinja2 all 3.1.5-2 [107 kB] Get: 103 http://deb.debian.org/debian trixie/main i386 python3-werkzeug all 3.1.3-2 [207 kB] Get: 104 http://deb.debian.org/debian trixie/main i386 python3-flask all 3.1.0-2 [106 kB] Get: 105 http://deb.debian.org/debian trixie/main i386 python3-wtforms all 3.2.1-1 [68.8 kB] Get: 106 http://deb.debian.org/debian trixie/main i386 python3-flask-bootstrap all 2.4.1+ds-1 [1092 kB] Get: 107 http://deb.debian.org/debian trixie/main i386 python3-httpcore all 1.0.7-1 [44.7 kB] Get: 108 http://deb.debian.org/debian trixie/main i386 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 109 http://deb.debian.org/debian trixie/main i386 python3-mdurl all 0.1.2-1 [9444 B] Get: 110 http://deb.debian.org/debian trixie/main i386 python3-markdown-it all 3.0.0-2 [62.5 kB] Get: 111 http://deb.debian.org/debian trixie/main i386 python3-rich all 13.9.4-1 [203 kB] Get: 112 http://deb.debian.org/debian trixie/main i386 python3-httpx all 0.27.2-1 [77.6 kB] Get: 113 http://deb.debian.org/debian trixie/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Get: 114 http://deb.debian.org/debian trixie/main i386 python3-markdown all 3.7-2 [85.2 kB] Get: 115 http://deb.debian.org/debian trixie/main i386 python3-pytz all 2025.1-3 [150 kB] Get: 116 http://deb.debian.org/debian trixie/main i386 python3-tz all 2025.1-3 [4004 B] Get: 117 http://deb.debian.org/debian trixie/main i386 python3-pandas-lib i386 2.2.3+dfsg-8+b1 [4307 kB] Get: 118 http://deb.debian.org/debian trixie/main i386 python3-pandas all 2.2.3+dfsg-8 [3097 kB] Get: 119 http://deb.debian.org/debian trixie/main i386 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 120 http://deb.debian.org/debian trixie/main i386 python3-pyparsing all 3.1.2-1 [146 kB] Get: 121 http://deb.debian.org/debian trixie/main i386 python3-urllib3 all 2.3.0-1 [114 kB] Get: 122 http://deb.debian.org/debian trixie/main i386 python3-requests all 2.32.3+dfsg-4 [72.1 kB] Get: 123 http://deb.debian.org/debian trixie/main i386 python3-tqdm all 4.67.1-2 [91.1 kB] Get: 124 http://deb.debian.org/debian trixie/main i386 python3-pystow all 0.5.5-1 [25.6 kB] Get: 125 http://deb.debian.org/debian trixie/main i386 python3-pytest all 8.3.4-1 [250 kB] Get: 126 http://deb.debian.org/debian trixie/main i386 python3-rdflib all 7.1.1-2 [472 kB] Get: 127 http://deb.debian.org/debian trixie/main i386 python3-rdflib-endpoint all 0.5.1-2 [14.2 kB] Get: 128 http://deb.debian.org/debian trixie/main i386 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 129 http://deb.debian.org/debian trixie/main i386 python3-yaml i386 6.0.2-1+b2 [135 kB] Fetched 54.6 MB in 1s (46.9 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19787 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-1_i386.deb ... Unpacking libpython3.13-minimal:i386 (3.13.2-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.6.4-1_i386.deb ... Unpacking libexpat1:i386 (2.6.4-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.2-1_i386.deb ... Unpacking python3.13-minimal (3.13.2-1) ... Setting up libpython3.13-minimal:i386 (3.13.2-1) ... Setting up libexpat1:i386 (2.6.4-1) ... Setting up python3.13-minimal (3.13.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20121 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.2-1_i386.deb ... Unpacking python3-minimal (3.13.2-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_12.0.0_all.deb ... Unpacking media-types (12.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025a-2_all.deb ... Unpacking tzdata (2025a-2) ... Selecting previously unselected package libffi8:i386. Preparing to unpack .../4-libffi8_3.4.7-1_i386.deb ... Unpacking libffi8:i386 (3.4.7-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:i386. Preparing to unpack .../6-libreadline8t64_8.2-6_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:i386. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_i386.deb ... Unpacking libpython3.13-stdlib:i386 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_i386.deb ... Unpacking python3.13 (3.13.2-1) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../9-libpython3-stdlib_3.13.2-1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.13.2-1) ... Setting up python3-minimal (3.13.2-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21131 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.2-1_i386.deb ... Unpacking python3 (3.13.2-1) ... Selecting previously unselected package python3-numpy-dev:i386. Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.3+ds-2+b1_i386.deb ... Unpacking python3-numpy-dev:i386 (1:2.2.3+ds-2+b1) ... Selecting previously unselected package libblas3:i386. Preparing to unpack .../002-libblas3_3.12.1-2_i386.deb ... Unpacking libblas3:i386 (3.12.1-2) ... Selecting previously unselected package libgfortran5:i386. Preparing to unpack .../003-libgfortran5_14.2.0-17_i386.deb ... Unpacking libgfortran5:i386 (14.2.0-17) ... Selecting previously unselected package liblapack3:i386. Preparing to unpack .../004-liblapack3_3.12.1-2_i386.deb ... Unpacking liblapack3:i386 (3.12.1-2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../005-python3-numpy_1%3a2.2.3+ds-2+b1_i386.deb ... Unpacking python3-numpy (1:2.2.3+ds-2+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../006-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. 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Setting up libelf1t64:i386 (0.192-4) ... Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Apr 12 13:26:46 UTC 2026. Universal Time is now: Sun Apr 12 13:26:46 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libblas3:i386 (3.12.1-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libunistring5:i386 (1.3-1) ... Setting up python3-numpy-dev:i386 (1:2.2.3+ds-2+b1) ... Setting up autopoint (0.23.1-1) ... Setting up libgfortran5:i386 (14.2.0-17) ... Setting up autoconf (2.72-3) ... Setting up libffi8:i386 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b2) ... Setting up netbase (6.4) ... Setting up openssl (3.4.1-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b2) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up liblapack3:i386 (3.12.1-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libreadline8t64:i386 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libpython3.13-stdlib:i386 (3.13.2-1) ... Setting up libpython3-stdlib:i386 (3.13.2-1) ... Setting up python3.13 (3.13.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.2-1) ... Setting up python3-sortedcontainers (2.4.0-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-click (8.2.0+0.really.8.1.8-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-markupsafe (2.1.5-1+b3) ... Setting up python3-wheel (0.45.1-1) ... Setting up python3-annotated-types (0.7.0-1) ... Setting up python3-jinja2 (3.1.5-2) ... Setting up python3-pygments (2.18.0+dfsg-2) ... Setting up python3-packaging (24.2-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-pyproject-hooks (1.2.0-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up python3-werkzeug (3.1.3-2) ... Setting up python3-mdurl (0.1.2-1) ... Setting up python3-idna (3.10-1) ... Setting up python3-markdown (3.7-2) ... Setting up python3-h11 (0.14.0-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-numpy (1:2.2.3+ds-2+b1) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-uvloop (0.21.0+ds1-2+b1) ... Setting up python3-installer (0.7.0+dfsg1-3) ... Setting up python3-urllib3 (2.3.0-1) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-markdown-it (3.0.0-2) ... Setting up python3-dnspython (2.7.0-1) ... Setting up python3-rdflib (7.1.1-2) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-email-validator (2.2.0-1) ... Setting up python3-build (1.2.2-1) ... Setting up python3-trie (0.4.0+ds-1) ... Setting up python3-soupsieve (2.6-1) ... Setting up python3-blinker (1.9.0-1) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-httpcore (1.0.7-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sniffio (1.3.1-1) ... Setting up python3-pydantic-core (2.27.2-1+b2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-wsproto (1.2.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-anyio (4.7.0-1) ... Setting up python3-wtforms (3.2.1-1) ... Setting up python3-rich (13.9.4-1) ... Setting up python3-defusedxml (0.7.1-3) ... Setting up python3-charset-normalizer (3.4.1-1+b1) ... Setting up python3-pytest (8.3.4-1) ... Setting up python3-pandas-lib:i386 (2.2.3+dfsg-8+b1) ... Setting up python3-tqdm (4.67.1-2) ... Setting up python3-typeguard (4.4.2-1) ... Setting up python3-tabulate (0.9.0-1) ... Setting up python3-itsdangerous (2.2.0-2) ... Setting up python3-all (3.13.2-1) ... Setting up python3-yaml (6.0.2-1+b2) ... Setting up debhelper (13.24.1) ... Setting up python3-pytz (2025.1-3) ... Setting up python3-starlette (0.41.3-2) ... Setting up python3-tz (2025.1-3) ... Setting up python3-bs4 (4.13.3-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pandas (2.2.3+dfsg-8) ... Setting up python3-httpx (0.27.2-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pydantic (2.10.6-1) ... Setting up python3-requests (2.32.3+dfsg-4) ... Setting up python3-pystow (0.5.5-1) ... Setting up python3-curies (0.9.0-1) ... Setting up python3-pkg-resources (75.8.0-1) ... Setting up python3-uvicorn (0.32.0-2) ... Setting up python3-setuptools (75.8.0-1) ... Setting up python3-flask (3.1.0-2) ... Setting up python3-flask-bootstrap (2.4.1+ds-1) ... Setting up python3-fastapi (0.115.11-3) ... Setting up python3-rdflib-endpoint (0.5.1-2) ... Setting up dh-python (6.20250108) ... Setting up pybuild-plugin-pyproject (6.20250108) ... Processing triggers for libc-bin (2.40-7) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-bioregistry-0.11.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-bioregistry_0.11.12-3_source.changes dpkg-buildpackage: info: source package python-bioregistry dpkg-buildpackage: info: source version 0.11.12-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 dpkg-source: info: using options from python-bioregistry-0.11.12/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13 * Building wheel... running bdist_wheel running build running build_py creating build/lib/bioregistry copying src/bioregistry/metaresource_api.py -> build/lib/bioregistry copying src/bioregistry/license_standardizer.py -> build/lib/bioregistry copying src/bioregistry/lint.py -> build/lib/bioregistry copying src/bioregistry/resource_manager.py -> build/lib/bioregistry copying src/bioregistry/version.py -> build/lib/bioregistry copying src/bioregistry/constants.py -> build/lib/bioregistry copying src/bioregistry/compare.py -> build/lib/bioregistry copying src/bioregistry/pandas.py -> build/lib/bioregistry copying src/bioregistry/resolve_identifier.py -> build/lib/bioregistry copying src/bioregistry/bibliometrics.py -> build/lib/bioregistry copying src/bioregistry/__main__.py -> build/lib/bioregistry copying src/bioregistry/record_accumulator.py -> build/lib/bioregistry copying src/bioregistry/resolve.py -> build/lib/bioregistry copying src/bioregistry/summary.py -> build/lib/bioregistry copying src/bioregistry/parse_iri.py -> build/lib/bioregistry copying src/bioregistry/__init__.py -> build/lib/bioregistry copying src/bioregistry/schema_utils.py -> build/lib/bioregistry copying src/bioregistry/collection_api.py -> build/lib/bioregistry copying src/bioregistry/utils.py -> build/lib/bioregistry copying src/bioregistry/uri_format.py -> build/lib/bioregistry copying src/bioregistry/upload_ndex.py -> build/lib/bioregistry copying src/bioregistry/parse_version_iri.py -> build/lib/bioregistry copying src/bioregistry/cli.py -> build/lib/bioregistry creating build/lib/bioregistry/gh copying src/bioregistry/gh/github_client.py -> build/lib/bioregistry/gh copying src/bioregistry/gh/__init__.py -> build/lib/bioregistry/gh copying src/bioregistry/gh/new_prefix.py -> build/lib/bioregistry/gh creating build/lib/bioregistry/curation copying src/bioregistry/curation/add_examples.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/clean_publications.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/cleanup_authors.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/import_pc_semiautomatic.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/map_bartoc_via_wikidata.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/fix_obo_purls.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_examples_from_ols.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/suggest_uniprot_providers.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/clean_name_suffixes.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_descriptions_from_gs.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_examples_from_javert.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/deprecation_diff.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_ontology_regexes.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/__init__.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/clean_licenses.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/map_re3data_via_fairsharing.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/rename_metaprefix.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/review_pc.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/make_health_report_curation_sheet.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/suggest_author_curation.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/enrich_publications.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/make_description_curation_sheet.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/bulk_import.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_co_providers.py -> build/lib/bioregistry/curation creating build/lib/bioregistry/external copying src/bioregistry/external/align.py -> build/lib/bioregistry/external copying src/bioregistry/external/__init__.py -> build/lib/bioregistry/external copying src/bioregistry/external/alignment_utils.py -> build/lib/bioregistry/external creating build/lib/bioregistry/schema copying src/bioregistry/schema/constants.py -> build/lib/bioregistry/schema copying src/bioregistry/schema/__init__.py -> build/lib/bioregistry/schema copying src/bioregistry/schema/utils.py -> build/lib/bioregistry/schema copying src/bioregistry/schema/struct.py -> build/lib/bioregistry/schema creating build/lib/bioregistry/health copying src/bioregistry/health/check_providers.py -> build/lib/bioregistry/health copying src/bioregistry/health/check_homepages.py -> build/lib/bioregistry/health copying src/bioregistry/health/__main__.py -> build/lib/bioregistry/health copying src/bioregistry/health/__init__.py -> build/lib/bioregistry/health copying src/bioregistry/health/cli.py -> build/lib/bioregistry/health creating build/lib/bioregistry/app copying src/bioregistry/app/constants.py -> build/lib/bioregistry/app copying src/bioregistry/app/test.py -> build/lib/bioregistry/app copying src/bioregistry/app/ui.py -> build/lib/bioregistry/app copying src/bioregistry/app/proxies.py -> build/lib/bioregistry/app copying src/bioregistry/app/__init__.py -> build/lib/bioregistry/app copying src/bioregistry/app/wsgi.py -> build/lib/bioregistry/app copying src/bioregistry/app/utils.py -> build/lib/bioregistry/app copying src/bioregistry/app/impl.py -> build/lib/bioregistry/app copying src/bioregistry/app/api.py -> build/lib/bioregistry/app copying src/bioregistry/app/cli.py -> build/lib/bioregistry/app creating build/lib/bioregistry/export copying src/bioregistry/export/rdf_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/tsv_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/sssom_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/__main__.py -> build/lib/bioregistry/export copying src/bioregistry/export/__init__.py -> build/lib/bioregistry/export copying src/bioregistry/export/yaml_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/schema_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/warnings_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/prefix_maps.py -> build/lib/bioregistry/export copying src/bioregistry/export/prefixcc.py -> build/lib/bioregistry/export copying src/bioregistry/export/cli.py -> build/lib/bioregistry/export copying src/bioregistry/export/tables_export.py -> build/lib/bioregistry/export creating build/lib/bioregistry/analysis copying src/bioregistry/analysis/bioregistry_diff.py -> build/lib/bioregistry/analysis copying src/bioregistry/analysis/__init__.py -> build/lib/bioregistry/analysis copying src/bioregistry/analysis/paper_ranking.py -> build/lib/bioregistry/analysis creating build/lib/bioregistry/data copying src/bioregistry/data/__init__.py -> build/lib/bioregistry/data creating build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/__main__.py -> build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/uri_parsing.py -> build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/__init__.py -> build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/curie_parsing.py -> build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/curie_validation.py -> build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/cli.py -> build/lib/bioregistry/benchmarks creating build/lib/bioregistry/external/re3data copying src/bioregistry/external/re3data/__init__.py -> build/lib/bioregistry/external/re3data creating build/lib/bioregistry/external/miriam copying src/bioregistry/external/miriam/__init__.py -> build/lib/bioregistry/external/miriam creating build/lib/bioregistry/external/togoid copying src/bioregistry/external/togoid/__init__.py -> build/lib/bioregistry/external/togoid creating build/lib/bioregistry/external/zazuko copying src/bioregistry/external/zazuko/__init__.py -> build/lib/bioregistry/external/zazuko creating build/lib/bioregistry/external/pathguide copying src/bioregistry/external/pathguide/__init__.py -> build/lib/bioregistry/external/pathguide creating build/lib/bioregistry/external/biocontext copying src/bioregistry/external/biocontext/__init__.py -> build/lib/bioregistry/external/biocontext creating build/lib/bioregistry/external/bartoc copying src/bioregistry/external/bartoc/__init__.py -> build/lib/bioregistry/external/bartoc creating build/lib/bioregistry/external/go copying src/bioregistry/external/go/__init__.py -> build/lib/bioregistry/external/go creating build/lib/bioregistry/external/aberowl copying src/bioregistry/external/aberowl/__init__.py -> build/lib/bioregistry/external/aberowl creating build/lib/bioregistry/external/fairsharing copying src/bioregistry/external/fairsharing/__init__.py -> build/lib/bioregistry/external/fairsharing creating build/lib/bioregistry/external/integbio copying src/bioregistry/external/integbio/__init__.py -> build/lib/bioregistry/external/integbio creating build/lib/bioregistry/external/wikidata copying src/bioregistry/external/wikidata/__init__.py -> build/lib/bioregistry/external/wikidata creating build/lib/bioregistry/external/lov copying src/bioregistry/external/lov/__init__.py -> build/lib/bioregistry/external/lov creating build/lib/bioregistry/external/ncbi copying src/bioregistry/external/ncbi/__init__.py -> build/lib/bioregistry/external/ncbi creating build/lib/bioregistry/external/biolink copying src/bioregistry/external/biolink/__init__.py -> build/lib/bioregistry/external/biolink creating build/lib/bioregistry/external/hl7 copying src/bioregistry/external/hl7/__init__.py -> build/lib/bioregistry/external/hl7 creating build/lib/bioregistry/external/cellosaurus copying src/bioregistry/external/cellosaurus/__init__.py -> build/lib/bioregistry/external/cellosaurus creating build/lib/bioregistry/external/prefixcommons copying src/bioregistry/external/prefixcommons/__init__.py -> build/lib/bioregistry/external/prefixcommons creating build/lib/bioregistry/external/cropoct copying src/bioregistry/external/cropoct/__init__.py -> build/lib/bioregistry/external/cropoct creating build/lib/bioregistry/external/obofoundry copying src/bioregistry/external/obofoundry/__init__.py -> build/lib/bioregistry/external/obofoundry creating build/lib/bioregistry/external/edam copying src/bioregistry/external/edam/__init__.py -> build/lib/bioregistry/external/edam creating build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/agroportal.py -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/ecoportal.py -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/__init__.py -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/bioportal.py -> build/lib/bioregistry/external/bioportal creating build/lib/bioregistry/external/ontobee copying src/bioregistry/external/ontobee/__init__.py -> build/lib/bioregistry/external/ontobee creating build/lib/bioregistry/external/n2t copying src/bioregistry/external/n2t/__init__.py -> build/lib/bioregistry/external/n2t creating build/lib/bioregistry/external/uniprot copying src/bioregistry/external/uniprot/__init__.py -> build/lib/bioregistry/external/uniprot creating build/lib/bioregistry/external/rrid copying src/bioregistry/external/rrid/__init__.py -> build/lib/bioregistry/external/rrid creating build/lib/bioregistry/external/ols copying src/bioregistry/external/ols/__init__.py -> build/lib/bioregistry/external/ols creating build/lib/bioregistry/external/cheminf copying src/bioregistry/external/cheminf/__init__.py -> build/lib/bioregistry/external/cheminf running egg_info creating src/bioregistry.egg-info writing src/bioregistry.egg-info/PKG-INFO writing dependency_links to src/bioregistry.egg-info/dependency_links.txt writing entry points to src/bioregistry.egg-info/entry_points.txt writing requirements to src/bioregistry.egg-info/requires.txt writing top-level names to src/bioregistry.egg-info/top_level.txt writing manifest file 'src/bioregistry.egg-info/SOURCES.txt' reading manifest file 'src/bioregistry.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'Makefile' under directory 'docs' warning: no previously-included files matching '*.png' found under directory 'docs/img' warning: no previously-included files matching '*.py[cod]' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.dylib' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.gpickle' found anywhere in distribution no previously-included directories found matching 'docs/build' no previously-included directories found matching 'docs/_data' no previously-included directories found matching 'docs/source/api' no previously-included directories found matching 'exports' no previously-included directories found matching 'notebooks' no previously-included directories found matching 'tests/.pytest_cache' warning: no previously-included files found matching 'docs/*.md' warning: no previously-included files found matching 'docs/guides/*.md' warning: no previously-included files found matching 'docs/_config.yml' warning: no previously-included files found matching '.appveyor.yml' warning: no previously-included files found matching '.bumpversion.cfg' warning: no previously-included files found matching '.coveragerc' warning: no previously-included files found matching '.flake8' warning: no previously-included files found matching '.travis.yml' warning: no previously-included files found matching '.readthedocs.yml' warning: no previously-included files found matching 'tox.ini' warning: no previously-included files found matching '.pre-commit-config.yaml' warning: no previously-included files found matching 'Dockerfile' warning: no previously-included files found matching 'CITATION.cff' warning: no files found matching '*.rst' adding license file 'LICENSE' writing manifest file 'src/bioregistry.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bioregistry.app.static' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'bioregistry.app.static' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'bioregistry.app.static' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'bioregistry.app.static' to be distributed and are already explicitly excluding 'bioregistry.app.static' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bioregistry.app.templates' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'bioregistry.app.templates' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'bioregistry.app.templates' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'bioregistry.app.templates' to be distributed and are already explicitly excluding 'bioregistry.app.templates' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bioregistry.app.templates.highlights' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'bioregistry.app.templates.highlights' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'bioregistry.app.templates.highlights' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'bioregistry.app.templates.highlights' to be distributed and are already explicitly excluding 'bioregistry.app.templates.highlights' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bioregistry.app.templates.meta' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'bioregistry.app.templates.meta' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'bioregistry.app.templates.meta' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'bioregistry.app.templates.meta' to be distributed and are already explicitly excluding 'bioregistry.app.templates.meta' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bioregistry.app.templates.resolve_errors' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'bioregistry.app.templates.resolve_errors' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'bioregistry.app.templates.resolve_errors' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'bioregistry.app.templates.resolve_errors' to be distributed and are already explicitly excluding 'bioregistry.app.templates.resolve_errors' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying src/bioregistry/py.typed -> build/lib/bioregistry copying src/bioregistry/curation/curated_papers.csv -> build/lib/bioregistry/curation copying src/bioregistry/schema/schema.json -> build/lib/bioregistry/schema creating build/lib/bioregistry/app/static copying src/bioregistry/app/static/logo.svg -> build/lib/bioregistry/app/static creating build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/base.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/collection.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/collections.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/context.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/contexts.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/contributor.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/contributors.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/home.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/macros.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/metaresource.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/metaresources.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/prose.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/reference.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/resource.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/resources.html -> build/lib/bioregistry/app/templates creating build/lib/bioregistry/app/templates/highlights copying src/bioregistry/app/templates/highlights/keywords.html -> build/lib/bioregistry/app/templates/highlights copying src/bioregistry/app/templates/highlights/owners.html -> build/lib/bioregistry/app/templates/highlights copying src/bioregistry/app/templates/highlights/relations.html -> build/lib/bioregistry/app/templates/highlights copying src/bioregistry/app/templates/highlights/twitter.html -> build/lib/bioregistry/app/templates/highlights creating build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/access.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/acknowledgements.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/download.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/related.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/schema.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/summary.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/sustainability.html -> build/lib/bioregistry/app/templates/meta creating build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/app/templates/resolve_errors/disallowed_identifier.html -> build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/app/templates/resolve_errors/invalid_identifier.html -> build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/app/templates/resolve_errors/missing_prefix.html -> build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/app/templates/resolve_errors/missing_providers.html -> build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/analysis/paper_ranking_requirements.txt -> build/lib/bioregistry/analysis copying src/bioregistry/data/README.md -> build/lib/bioregistry/data copying src/bioregistry/data/bioregistry.json -> build/lib/bioregistry/data copying src/bioregistry/data/collections.json -> build/lib/bioregistry/data copying src/bioregistry/data/contexts.json -> build/lib/bioregistry/data copying src/bioregistry/data/metaregistry.json -> build/lib/bioregistry/data copying src/bioregistry/data/mismatch.json -> build/lib/bioregistry/data copying src/bioregistry/external/re3data/processed.json -> build/lib/bioregistry/external/re3data copying src/bioregistry/external/miriam/processed.json -> build/lib/bioregistry/external/miriam copying src/bioregistry/external/togoid/processed.json -> build/lib/bioregistry/external/togoid copying src/bioregistry/external/zazuko/processed.json -> build/lib/bioregistry/external/zazuko copying src/bioregistry/external/biocontext/processed.json -> build/lib/bioregistry/external/biocontext copying src/bioregistry/external/bartoc/processed.json -> build/lib/bioregistry/external/bartoc copying src/bioregistry/external/go/processed.json -> build/lib/bioregistry/external/go copying src/bioregistry/external/go/processing_go.json -> build/lib/bioregistry/external/go copying src/bioregistry/external/aberowl/processed.json -> build/lib/bioregistry/external/aberowl copying src/bioregistry/external/fairsharing/processed.json -> build/lib/bioregistry/external/fairsharing copying src/bioregistry/external/integbio/processed.json -> build/lib/bioregistry/external/integbio copying src/bioregistry/external/wikidata/processed.json -> build/lib/bioregistry/external/wikidata copying src/bioregistry/external/lov/processed.json -> build/lib/bioregistry/external/lov copying src/bioregistry/external/ncbi/processed.json -> build/lib/bioregistry/external/ncbi copying src/bioregistry/external/biolink/processed.json -> build/lib/bioregistry/external/biolink copying src/bioregistry/external/biolink/processing_biolink.json -> build/lib/bioregistry/external/biolink copying src/bioregistry/external/hl7/OID_Report.csv -> build/lib/bioregistry/external/hl7 copying src/bioregistry/external/cellosaurus/processed.json -> build/lib/bioregistry/external/cellosaurus copying src/bioregistry/external/prefixcommons/processed.json -> build/lib/bioregistry/external/prefixcommons copying src/bioregistry/external/cropoct/processed.json -> build/lib/bioregistry/external/cropoct copying src/bioregistry/external/obofoundry/processed.json -> build/lib/bioregistry/external/obofoundry copying src/bioregistry/external/edam/processed.json -> build/lib/bioregistry/external/edam copying src/bioregistry/external/bioportal/agroportal.json -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/bioportal.json -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/ecoportal.json -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/ontobee/processed.json -> build/lib/bioregistry/external/ontobee copying src/bioregistry/external/n2t/processed.json -> build/lib/bioregistry/external/n2t copying src/bioregistry/external/uniprot/processed.json -> build/lib/bioregistry/external/uniprot copying src/bioregistry/external/ols/processed.json -> build/lib/bioregistry/external/ols copying src/bioregistry/external/ols/processing_ols.json -> build/lib/bioregistry/external/ols copying src/bioregistry/external/cheminf/processed.json -> build/lib/bioregistry/external/cheminf installing to build/bdist.linux-i686/wheel running install running install_lib creating build/bdist.linux-i686/wheel creating build/bdist.linux-i686/wheel/bioregistry copying build/lib/bioregistry/metaresource_api.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/license_standardizer.py -> build/bdist.linux-i686/wheel/./bioregistry creating build/bdist.linux-i686/wheel/bioregistry/gh copying build/lib/bioregistry/gh/github_client.py -> build/bdist.linux-i686/wheel/./bioregistry/gh copying build/lib/bioregistry/gh/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/gh copying build/lib/bioregistry/gh/new_prefix.py -> build/bdist.linux-i686/wheel/./bioregistry/gh creating build/bdist.linux-i686/wheel/bioregistry/curation copying build/lib/bioregistry/curation/add_examples.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/clean_publications.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/cleanup_authors.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/import_pc_semiautomatic.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/map_bartoc_via_wikidata.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/fix_obo_purls.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_examples_from_ols.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/suggest_uniprot_providers.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/clean_name_suffixes.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_descriptions_from_gs.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_examples_from_javert.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/deprecation_diff.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_ontology_regexes.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/clean_licenses.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/curated_papers.csv -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/map_re3data_via_fairsharing.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/rename_metaprefix.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/review_pc.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/make_health_report_curation_sheet.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/suggest_author_curation.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/enrich_publications.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/make_description_curation_sheet.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/bulk_import.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_co_providers.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/lint.py -> build/bdist.linux-i686/wheel/./bioregistry creating build/bdist.linux-i686/wheel/bioregistry/external creating build/bdist.linux-i686/wheel/bioregistry/external/re3data copying build/lib/bioregistry/external/re3data/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/re3data copying build/lib/bioregistry/external/re3data/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/re3data creating build/bdist.linux-i686/wheel/bioregistry/external/miriam copying build/lib/bioregistry/external/miriam/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/miriam copying build/lib/bioregistry/external/miriam/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/miriam creating build/bdist.linux-i686/wheel/bioregistry/external/togoid copying build/lib/bioregistry/external/togoid/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/togoid copying build/lib/bioregistry/external/togoid/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/togoid creating build/bdist.linux-i686/wheel/bioregistry/external/zazuko copying build/lib/bioregistry/external/zazuko/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/zazuko copying build/lib/bioregistry/external/zazuko/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/zazuko copying build/lib/bioregistry/external/align.py -> build/bdist.linux-i686/wheel/./bioregistry/external creating build/bdist.linux-i686/wheel/bioregistry/external/pathguide copying build/lib/bioregistry/external/pathguide/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/pathguide creating build/bdist.linux-i686/wheel/bioregistry/external/biocontext copying build/lib/bioregistry/external/biocontext/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/biocontext copying build/lib/bioregistry/external/biocontext/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/biocontext creating build/bdist.linux-i686/wheel/bioregistry/external/bartoc copying build/lib/bioregistry/external/bartoc/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/bartoc copying build/lib/bioregistry/external/bartoc/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/bartoc creating build/bdist.linux-i686/wheel/bioregistry/external/go copying build/lib/bioregistry/external/go/processing_go.json -> build/bdist.linux-i686/wheel/./bioregistry/external/go copying build/lib/bioregistry/external/go/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/go copying build/lib/bioregistry/external/go/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/go creating build/bdist.linux-i686/wheel/bioregistry/external/aberowl copying build/lib/bioregistry/external/aberowl/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/aberowl copying build/lib/bioregistry/external/aberowl/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/aberowl creating build/bdist.linux-i686/wheel/bioregistry/external/fairsharing copying build/lib/bioregistry/external/fairsharing/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/fairsharing copying build/lib/bioregistry/external/fairsharing/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/fairsharing creating build/bdist.linux-i686/wheel/bioregistry/external/integbio copying build/lib/bioregistry/external/integbio/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/integbio copying build/lib/bioregistry/external/integbio/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/integbio creating build/bdist.linux-i686/wheel/bioregistry/external/wikidata copying build/lib/bioregistry/external/wikidata/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/wikidata copying build/lib/bioregistry/external/wikidata/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/wikidata creating build/bdist.linux-i686/wheel/bioregistry/external/lov copying build/lib/bioregistry/external/lov/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/lov copying build/lib/bioregistry/external/lov/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/lov creating build/bdist.linux-i686/wheel/bioregistry/external/ncbi copying build/lib/bioregistry/external/ncbi/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/ncbi copying build/lib/bioregistry/external/ncbi/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/ncbi creating build/bdist.linux-i686/wheel/bioregistry/external/biolink copying build/lib/bioregistry/external/biolink/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/biolink copying build/lib/bioregistry/external/biolink/processing_biolink.json -> build/bdist.linux-i686/wheel/./bioregistry/external/biolink copying build/lib/bioregistry/external/biolink/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/biolink copying build/lib/bioregistry/external/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external creating build/bdist.linux-i686/wheel/bioregistry/external/hl7 copying build/lib/bioregistry/external/hl7/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/hl7 copying build/lib/bioregistry/external/hl7/OID_Report.csv -> build/bdist.linux-i686/wheel/./bioregistry/external/hl7 creating build/bdist.linux-i686/wheel/bioregistry/external/cellosaurus copying build/lib/bioregistry/external/cellosaurus/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/cellosaurus copying build/lib/bioregistry/external/cellosaurus/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/cellosaurus creating build/bdist.linux-i686/wheel/bioregistry/external/prefixcommons copying build/lib/bioregistry/external/prefixcommons/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/prefixcommons copying build/lib/bioregistry/external/prefixcommons/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/prefixcommons creating build/bdist.linux-i686/wheel/bioregistry/external/cropoct copying build/lib/bioregistry/external/cropoct/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/cropoct copying build/lib/bioregistry/external/cropoct/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/cropoct creating build/bdist.linux-i686/wheel/bioregistry/external/obofoundry copying build/lib/bioregistry/external/obofoundry/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/obofoundry copying build/lib/bioregistry/external/obofoundry/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/obofoundry copying build/lib/bioregistry/external/alignment_utils.py -> build/bdist.linux-i686/wheel/./bioregistry/external creating build/bdist.linux-i686/wheel/bioregistry/external/edam copying build/lib/bioregistry/external/edam/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/edam copying build/lib/bioregistry/external/edam/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/edam creating build/bdist.linux-i686/wheel/bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/agroportal.py -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/ecoportal.py -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/agroportal.json -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/bioportal.json -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/bioportal.py -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/ecoportal.json -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal creating build/bdist.linux-i686/wheel/bioregistry/external/ontobee copying build/lib/bioregistry/external/ontobee/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/ontobee copying build/lib/bioregistry/external/ontobee/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/ontobee creating build/bdist.linux-i686/wheel/bioregistry/external/n2t copying build/lib/bioregistry/external/n2t/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/n2t copying build/lib/bioregistry/external/n2t/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/n2t creating build/bdist.linux-i686/wheel/bioregistry/external/uniprot copying build/lib/bioregistry/external/uniprot/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/uniprot copying build/lib/bioregistry/external/uniprot/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/uniprot creating build/bdist.linux-i686/wheel/bioregistry/external/rrid copying build/lib/bioregistry/external/rrid/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/rrid creating build/bdist.linux-i686/wheel/bioregistry/external/ols copying build/lib/bioregistry/external/ols/processing_ols.json -> build/bdist.linux-i686/wheel/./bioregistry/external/ols copying build/lib/bioregistry/external/ols/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/ols copying build/lib/bioregistry/external/ols/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/ols creating build/bdist.linux-i686/wheel/bioregistry/external/cheminf copying build/lib/bioregistry/external/cheminf/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/cheminf copying build/lib/bioregistry/external/cheminf/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/cheminf copying build/lib/bioregistry/resource_manager.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/version.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/constants.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/compare.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/pandas.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/resolve_identifier.py -> build/bdist.linux-i686/wheel/./bioregistry creating build/bdist.linux-i686/wheel/bioregistry/schema copying build/lib/bioregistry/schema/constants.py -> build/bdist.linux-i686/wheel/./bioregistry/schema copying build/lib/bioregistry/schema/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/schema copying build/lib/bioregistry/schema/schema.json -> build/bdist.linux-i686/wheel/./bioregistry/schema copying build/lib/bioregistry/schema/utils.py -> build/bdist.linux-i686/wheel/./bioregistry/schema copying build/lib/bioregistry/schema/struct.py -> build/bdist.linux-i686/wheel/./bioregistry/schema copying build/lib/bioregistry/bibliometrics.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/__main__.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/record_accumulator.py -> build/bdist.linux-i686/wheel/./bioregistry creating build/bdist.linux-i686/wheel/bioregistry/health copying build/lib/bioregistry/health/check_providers.py -> build/bdist.linux-i686/wheel/./bioregistry/health copying build/lib/bioregistry/health/check_homepages.py -> build/bdist.linux-i686/wheel/./bioregistry/health copying build/lib/bioregistry/health/__main__.py -> build/bdist.linux-i686/wheel/./bioregistry/health copying build/lib/bioregistry/health/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/health copying build/lib/bioregistry/health/cli.py -> build/bdist.linux-i686/wheel/./bioregistry/health copying build/lib/bioregistry/resolve.py -> build/bdist.linux-i686/wheel/./bioregistry creating build/bdist.linux-i686/wheel/bioregistry/app creating build/bdist.linux-i686/wheel/bioregistry/app/templates copying build/lib/bioregistry/app/templates/collection.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/collections.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates creating build/bdist.linux-i686/wheel/bioregistry/app/templates/resolve_errors copying build/lib/bioregistry/app/templates/resolve_errors/disallowed_identifier.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/resolve_errors copying build/lib/bioregistry/app/templates/resolve_errors/invalid_identifier.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/resolve_errors copying build/lib/bioregistry/app/templates/resolve_errors/missing_providers.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/resolve_errors copying build/lib/bioregistry/app/templates/resolve_errors/missing_prefix.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/resolve_errors creating build/bdist.linux-i686/wheel/bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/highlights/relations.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/highlights/keywords.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/highlights/owners.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/highlights/twitter.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/resource.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/prose.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/base.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/contributor.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/home.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/macros.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/resources.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/contributors.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/metaresources.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates creating build/bdist.linux-i686/wheel/bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/related.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/download.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/acknowledgements.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/schema.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/access.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/sustainability.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/summary.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/context.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/contexts.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/metaresource.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/reference.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/constants.py -> build/bdist.linux-i686/wheel/./bioregistry/app copying build/lib/bioregistry/app/test.py -> build/bdist.linux-i686/wheel/./bioregistry/app copying build/lib/bioregistry/app/ui.py -> build/bdist.linux-i686/wheel/./bioregistry/app copying build/lib/bioregistry/app/proxies.py -> build/bdist.linux-i686/wheel/./bioregistry/app copying build/lib/bioregistry/app/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/app copying build/lib/bioregistry/app/wsgi.py -> build/bdist.linux-i686/wheel/./bioregistry/app creating build/bdist.linux-i686/wheel/bioregistry/app/static copying build/lib/bioregistry/app/static/logo.svg -> build/bdist.linux-i686/wheel/./bioregistry/app/static copying build/lib/bioregistry/app/utils.py -> build/bdist.linux-i686/wheel/./bioregistry/app copying build/lib/bioregistry/app/impl.py -> build/bdist.linux-i686/wheel/./bioregistry/app copying build/lib/bioregistry/app/api.py -> build/bdist.linux-i686/wheel/./bioregistry/app copying build/lib/bioregistry/app/cli.py -> build/bdist.linux-i686/wheel/./bioregistry/app copying build/lib/bioregistry/summary.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/parse_iri.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/py.typed -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry creating build/bdist.linux-i686/wheel/bioregistry/export copying build/lib/bioregistry/export/rdf_export.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/tsv_export.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/sssom_export.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/__main__.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/yaml_export.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/schema_export.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/warnings_export.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/prefix_maps.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/prefixcc.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/cli.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/tables_export.py -> build/bdist.linux-i686/wheel/./bioregistry/export creating build/bdist.linux-i686/wheel/bioregistry/analysis copying build/lib/bioregistry/analysis/paper_ranking_requirements.txt -> build/bdist.linux-i686/wheel/./bioregistry/analysis copying build/lib/bioregistry/analysis/bioregistry_diff.py -> build/bdist.linux-i686/wheel/./bioregistry/analysis copying build/lib/bioregistry/analysis/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/analysis copying build/lib/bioregistry/analysis/paper_ranking.py -> build/bdist.linux-i686/wheel/./bioregistry/analysis copying build/lib/bioregistry/schema_utils.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/collection_api.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/utils.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/uri_format.py -> build/bdist.linux-i686/wheel/./bioregistry creating build/bdist.linux-i686/wheel/bioregistry/data copying build/lib/bioregistry/data/contexts.json -> build/bdist.linux-i686/wheel/./bioregistry/data copying build/lib/bioregistry/data/metaregistry.json -> build/bdist.linux-i686/wheel/./bioregistry/data copying build/lib/bioregistry/data/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/data copying build/lib/bioregistry/data/bioregistry.json -> build/bdist.linux-i686/wheel/./bioregistry/data copying build/lib/bioregistry/data/mismatch.json -> build/bdist.linux-i686/wheel/./bioregistry/data copying build/lib/bioregistry/data/README.md -> build/bdist.linux-i686/wheel/./bioregistry/data copying build/lib/bioregistry/data/collections.json -> build/bdist.linux-i686/wheel/./bioregistry/data copying build/lib/bioregistry/upload_ndex.py -> build/bdist.linux-i686/wheel/./bioregistry creating build/bdist.linux-i686/wheel/bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/__main__.py -> build/bdist.linux-i686/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/uri_parsing.py -> build/bdist.linux-i686/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/curie_parsing.py -> build/bdist.linux-i686/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/curie_validation.py -> build/bdist.linux-i686/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/cli.py -> build/bdist.linux-i686/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/parse_version_iri.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/cli.py -> build/bdist.linux-i686/wheel/./bioregistry running install_egg_info Copying src/bioregistry.egg-info to build/bdist.linux-i686/wheel/./bioregistry-0.11.12.egg-info running install_scripts creating build/bdist.linux-i686/wheel/bioregistry-0.11.12.dist-info/WHEEL creating '/build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/.tmp-277rxz41/bioregistry-0.11.12-py3-none-any.whl' and adding 'build/bdist.linux-i686/wheel' to it adding 'bioregistry/__init__.py' adding 'bioregistry/__main__.py' adding 'bioregistry/bibliometrics.py' adding 'bioregistry/cli.py' adding 'bioregistry/collection_api.py' adding 'bioregistry/compare.py' adding 'bioregistry/constants.py' adding 'bioregistry/license_standardizer.py' adding 'bioregistry/lint.py' adding 'bioregistry/metaresource_api.py' adding 'bioregistry/pandas.py' adding 'bioregistry/parse_iri.py' adding 'bioregistry/parse_version_iri.py' adding 'bioregistry/py.typed' adding 'bioregistry/record_accumulator.py' adding 'bioregistry/resolve.py' adding 'bioregistry/resolve_identifier.py' adding 'bioregistry/resource_manager.py' adding 'bioregistry/schema_utils.py' adding 'bioregistry/summary.py' adding 'bioregistry/upload_ndex.py' adding 'bioregistry/uri_format.py' adding 'bioregistry/utils.py' adding 'bioregistry/version.py' adding 'bioregistry/analysis/__init__.py' adding 'bioregistry/analysis/bioregistry_diff.py' adding 'bioregistry/analysis/paper_ranking.py' adding 'bioregistry/analysis/paper_ranking_requirements.txt' adding 'bioregistry/app/__init__.py' adding 'bioregistry/app/api.py' adding 'bioregistry/app/cli.py' adding 'bioregistry/app/constants.py' adding 'bioregistry/app/impl.py' adding 'bioregistry/app/proxies.py' adding 'bioregistry/app/test.py' adding 'bioregistry/app/ui.py' adding 'bioregistry/app/utils.py' adding 'bioregistry/app/wsgi.py' adding 'bioregistry/app/static/logo.svg' adding 'bioregistry/app/templates/base.html' adding 'bioregistry/app/templates/collection.html' adding 'bioregistry/app/templates/collections.html' adding 'bioregistry/app/templates/context.html' adding 'bioregistry/app/templates/contexts.html' adding 'bioregistry/app/templates/contributor.html' adding 'bioregistry/app/templates/contributors.html' adding 'bioregistry/app/templates/home.html' adding 'bioregistry/app/templates/macros.html' adding 'bioregistry/app/templates/metaresource.html' adding 'bioregistry/app/templates/metaresources.html' adding 'bioregistry/app/templates/prose.html' adding 'bioregistry/app/templates/reference.html' adding 'bioregistry/app/templates/resource.html' adding 'bioregistry/app/templates/resources.html' adding 'bioregistry/app/templates/highlights/keywords.html' adding 'bioregistry/app/templates/highlights/owners.html' adding 'bioregistry/app/templates/highlights/relations.html' adding 'bioregistry/app/templates/highlights/twitter.html' adding 'bioregistry/app/templates/meta/access.html' adding 'bioregistry/app/templates/meta/acknowledgements.html' adding 'bioregistry/app/templates/meta/download.html' adding 'bioregistry/app/templates/meta/related.html' adding 'bioregistry/app/templates/meta/schema.html' adding 'bioregistry/app/templates/meta/summary.html' adding 'bioregistry/app/templates/meta/sustainability.html' adding 'bioregistry/app/templates/resolve_errors/disallowed_identifier.html' adding 'bioregistry/app/templates/resolve_errors/invalid_identifier.html' adding 'bioregistry/app/templates/resolve_errors/missing_prefix.html' adding 'bioregistry/app/templates/resolve_errors/missing_providers.html' adding 'bioregistry/benchmarks/__init__.py' adding 'bioregistry/benchmarks/__main__.py' adding 'bioregistry/benchmarks/cli.py' adding 'bioregistry/benchmarks/curie_parsing.py' adding 'bioregistry/benchmarks/curie_validation.py' adding 'bioregistry/benchmarks/uri_parsing.py' adding 'bioregistry/curation/__init__.py' adding 'bioregistry/curation/add_co_providers.py' adding 'bioregistry/curation/add_descriptions_from_gs.py' adding 'bioregistry/curation/add_examples.py' adding 'bioregistry/curation/add_examples_from_javert.py' adding 'bioregistry/curation/add_examples_from_ols.py' adding 'bioregistry/curation/add_ontology_regexes.py' adding 'bioregistry/curation/bulk_import.py' adding 'bioregistry/curation/clean_licenses.py' adding 'bioregistry/curation/clean_name_suffixes.py' adding 'bioregistry/curation/clean_publications.py' adding 'bioregistry/curation/cleanup_authors.py' adding 'bioregistry/curation/curated_papers.csv' adding 'bioregistry/curation/deprecation_diff.py' adding 'bioregistry/curation/enrich_publications.py' adding 'bioregistry/curation/fix_obo_purls.py' adding 'bioregistry/curation/import_pc_semiautomatic.py' adding 'bioregistry/curation/make_description_curation_sheet.py' adding 'bioregistry/curation/make_health_report_curation_sheet.py' adding 'bioregistry/curation/map_bartoc_via_wikidata.py' adding 'bioregistry/curation/map_re3data_via_fairsharing.py' adding 'bioregistry/curation/rename_metaprefix.py' adding 'bioregistry/curation/review_pc.py' adding 'bioregistry/curation/suggest_author_curation.py' adding 'bioregistry/curation/suggest_uniprot_providers.py' adding 'bioregistry/data/README.md' adding 'bioregistry/data/__init__.py' adding 'bioregistry/data/bioregistry.json' adding 'bioregistry/data/collections.json' adding 'bioregistry/data/contexts.json' adding 'bioregistry/data/metaregistry.json' adding 'bioregistry/data/mismatch.json' adding 'bioregistry/export/__init__.py' adding 'bioregistry/export/__main__.py' adding 'bioregistry/export/cli.py' adding 'bioregistry/export/prefix_maps.py' adding 'bioregistry/export/prefixcc.py' adding 'bioregistry/export/rdf_export.py' adding 'bioregistry/export/schema_export.py' adding 'bioregistry/export/sssom_export.py' adding 'bioregistry/export/tables_export.py' adding 'bioregistry/export/tsv_export.py' adding 'bioregistry/export/warnings_export.py' adding 'bioregistry/export/yaml_export.py' adding 'bioregistry/external/__init__.py' adding 'bioregistry/external/align.py' adding 'bioregistry/external/alignment_utils.py' adding 'bioregistry/external/aberowl/__init__.py' adding 'bioregistry/external/aberowl/processed.json' adding 'bioregistry/external/bartoc/__init__.py' adding 'bioregistry/external/bartoc/processed.json' adding 'bioregistry/external/biocontext/__init__.py' adding 'bioregistry/external/biocontext/processed.json' adding 'bioregistry/external/biolink/__init__.py' adding 'bioregistry/external/biolink/processed.json' adding 'bioregistry/external/biolink/processing_biolink.json' adding 'bioregistry/external/bioportal/__init__.py' adding 'bioregistry/external/bioportal/agroportal.json' adding 'bioregistry/external/bioportal/agroportal.py' adding 'bioregistry/external/bioportal/bioportal.json' adding 'bioregistry/external/bioportal/bioportal.py' adding 'bioregistry/external/bioportal/ecoportal.json' adding 'bioregistry/external/bioportal/ecoportal.py' adding 'bioregistry/external/cellosaurus/__init__.py' adding 'bioregistry/external/cellosaurus/processed.json' adding 'bioregistry/external/cheminf/__init__.py' adding 'bioregistry/external/cheminf/processed.json' adding 'bioregistry/external/cropoct/__init__.py' adding 'bioregistry/external/cropoct/processed.json' adding 'bioregistry/external/edam/__init__.py' adding 'bioregistry/external/edam/processed.json' adding 'bioregistry/external/fairsharing/__init__.py' adding 'bioregistry/external/fairsharing/processed.json' adding 'bioregistry/external/go/__init__.py' adding 'bioregistry/external/go/processed.json' adding 'bioregistry/external/go/processing_go.json' adding 'bioregistry/external/hl7/OID_Report.csv' adding 'bioregistry/external/hl7/__init__.py' adding 'bioregistry/external/integbio/__init__.py' adding 'bioregistry/external/integbio/processed.json' adding 'bioregistry/external/lov/__init__.py' adding 'bioregistry/external/lov/processed.json' adding 'bioregistry/external/miriam/__init__.py' adding 'bioregistry/external/miriam/processed.json' adding 'bioregistry/external/n2t/__init__.py' adding 'bioregistry/external/n2t/processed.json' adding 'bioregistry/external/ncbi/__init__.py' adding 'bioregistry/external/ncbi/processed.json' adding 'bioregistry/external/obofoundry/__init__.py' adding 'bioregistry/external/obofoundry/processed.json' adding 'bioregistry/external/ols/__init__.py' adding 'bioregistry/external/ols/processed.json' adding 'bioregistry/external/ols/processing_ols.json' adding 'bioregistry/external/ontobee/__init__.py' adding 'bioregistry/external/ontobee/processed.json' adding 'bioregistry/external/pathguide/__init__.py' adding 'bioregistry/external/prefixcommons/__init__.py' adding 'bioregistry/external/prefixcommons/processed.json' adding 'bioregistry/external/re3data/__init__.py' adding 'bioregistry/external/re3data/processed.json' adding 'bioregistry/external/rrid/__init__.py' adding 'bioregistry/external/togoid/__init__.py' adding 'bioregistry/external/togoid/processed.json' adding 'bioregistry/external/uniprot/__init__.py' adding 'bioregistry/external/uniprot/processed.json' adding 'bioregistry/external/wikidata/__init__.py' adding 'bioregistry/external/wikidata/processed.json' adding 'bioregistry/external/zazuko/__init__.py' adding 'bioregistry/external/zazuko/processed.json' adding 'bioregistry/gh/__init__.py' adding 'bioregistry/gh/github_client.py' adding 'bioregistry/gh/new_prefix.py' adding 'bioregistry/health/__init__.py' adding 'bioregistry/health/__main__.py' adding 'bioregistry/health/check_homepages.py' adding 'bioregistry/health/check_providers.py' adding 'bioregistry/health/cli.py' adding 'bioregistry/schema/__init__.py' adding 'bioregistry/schema/constants.py' adding 'bioregistry/schema/schema.json' adding 'bioregistry/schema/struct.py' adding 'bioregistry/schema/utils.py' adding 'bioregistry-0.11.12.dist-info/LICENSE' adding 'bioregistry-0.11.12.dist-info/METADATA' adding 'bioregistry-0.11.12.dist-info/WHEEL' adding 'bioregistry-0.11.12.dist-info/entry_points.txt' adding 'bioregistry-0.11.12.dist-info/top_level.txt' adding 'bioregistry-0.11.12.dist-info/RECORD' removing build/bdist.linux-i686/wheel Successfully built bioregistry-0.11.12-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build; python3.13 -m pytest -k 'not test_url and not test_url_banana and not test_obolibrary_example and not test_usages ' ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build configfile: pyproject.toml plugins: anyio-4.7.0, typeguard-4.4.2 collected 137 items / 6 deselected / 131 selected tests/test_api.py . [ 0%] tests/test_collections.py ... [ 3%] tests/test_contexts.py .... [ 6%] tests/test_data.py ...................s............................s... [ 45%] tests/test_data_slow.py ... [ 48%] tests/test_duplicates.py .. [ 49%] tests/test_identifiers_org.py .... [ 52%] tests/test_indra.py ss [ 54%] tests/test_manager.py ........... [ 62%] tests/test_metaregistry.py ..... [ 66%] tests/test_obofoundry.py . [ 67%] tests/test_ols.py . [ 67%] tests/test_pandas.py .s.... [ 72%] tests/test_resolve.py ....... [ 77%] tests/test_sparql.py s [ 78%] tests/test_utils.py .. [ 80%] tests/test_web/test_api.py ................ [ 92%] tests/test_web/test_ui.py .......... [100%] =============================== warnings summary =============================== bioregistry/schema_utils.py:61: 1778 warnings tests/test_contexts.py: 1778 warnings tests/test_manager.py: 19558 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/schema_utils.py:61: PydanticDeprecatedSince20: The `parse_obj` method is deprecated; use `model_validate` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ return {prefix: Resource.parse_obj(value) for prefix, value in data.items()} bioregistry/schema/struct.py:648: 7112 warnings tests/test_api.py: 7 warnings tests/test_collections.py: 58 warnings tests/test_contexts.py: 209240 warnings tests/test_data.py: 230996 warnings tests/test_data_slow.py: 334389 warnings tests/test_identifiers_org.py: 1497 warnings tests/test_manager.py: 422132 warnings tests/test_metaregistry.py: 245 warnings tests/test_resolve.py: 8418 warnings tests/test_web/test_api.py: 4180 warnings tests/test_web/test_ui.py: 13217 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/schema/struct.py:648: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ return self.dict().get(metaprefix) or dict() bioregistry/app/api.py:137 /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/app/api.py:137: DeprecationWarning: `example` has been deprecated, please use `examples` instead prefix: str = Path( bioregistry/app/api.py:185 /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/app/api.py:185: DeprecationWarning: `example` has been deprecated, please use `examples` instead METAPREFIX_PATH = Path( bioregistry/app/api.py:353 /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/app/api.py:353: DeprecationWarning: `example` has been deprecated, please use `examples` instead identifier: str = Path( bioregistry/app/api.py:405 /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/app/api.py:405: DeprecationWarning: `example` has been deprecated, please use `examples` instead identifier: str = Path(title="Context Key", description="The context key", example="obo"), ../../../../../../usr/lib/python3/dist-packages/starlette/middleware/wsgi.py:14 /usr/lib/python3/dist-packages/starlette/middleware/wsgi.py:14: DeprecationWarning: starlette.middleware.wsgi is deprecated and will be removed in a future release. Please refer to https://github.com/abersheeran/a2wsgi as a replacement. warnings.warn( tests/test_api.py: 7 warnings tests/test_collections.py: 18 warnings tests/test_contexts.py: 31539 warnings tests/test_data.py: 43942 warnings tests/test_data_slow.py: 47708 warnings tests/test_identifiers_org.py: 778 warnings tests/test_manager.py: 48395 warnings tests/test_metaregistry.py: 56 warnings tests/test_resolve.py: 3454 warnings tests/test_web/test_api.py: 2727 warnings tests/test_web/test_ui.py: 5177 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/schema/struct.py:673: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ rv = self.dict().get(key) tests/test_collections.py: 13 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/tests/test_collections.py:31: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ collection = collection_pydantic.dict() tests/test_data.py::TestRegistry::test_keys /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/tests/test_data.py:83: PydanticDeprecatedSince20: The `__fields__` attribute is deprecated, use `model_fields` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ keys = set(Resource.__fields__.keys()) tests/test_data.py: 1404 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/tests/test_data.py:875: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ for key, value in publication.dict().items(): tests/test_manager.py: 3021 warnings tests/test_web/test_api.py: 38 warnings tests/test_web/test_ui.py: 31 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/schema/struct.py:2853: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ records = [publication.dict(exclude_none=True) for publication in publications] tests/test_manager.py: 99 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/schema/struct.py:1296: PydanticDeprecatedSince20: The `parse_obj` method is deprecated; use `model_validate` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ publications.append(Publication.parse_obj(publication)) tests/test_metaregistry.py: 32 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/tests/test_metaregistry.py:84: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ invalid_keys = set(registry.dict()).difference(Registry.__fields__) tests/test_metaregistry.py: 32 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/tests/test_metaregistry.py:84: PydanticDeprecatedSince20: The `__fields__` attribute is deprecated, use `model_fields` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ invalid_keys = set(registry.dict()).difference(Registry.__fields__) tests/test_web/test_api.py::TestWeb::test_api_collection tests/test_web/test_api.py::TestWeb::test_api_metaresource tests/test_web/test_api.py::TestWeb::test_api_resource /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/app/api.py:57: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ content = content.dict( tests/test_web/test_api.py: 2390 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/schema/utils.py:30: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ return sanitize_dict(base_model.dict(**kwargs)) tests/test_web/test_api.py: 3556 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/tests/test_web/test_api.py:59: PydanticDeprecatedSince20: The `parse_obj` method is deprecated; use `model_validate` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ return {key: Resource.parse_obj(resource) for key, resource in data} tests/test_web/test_api.py: 1778 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/tests/test_web/test_api.py:93: PydanticDeprecatedSince20: The `parse_obj` method is deprecated; use `model_validate` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ return {key: Resource.parse_obj(resource) for key, resource in data} tests/test_web/test_api.py::TestWeb::test_external_registry_mappings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/tests/test_web/test_api.py:237: PydanticDeprecatedSince20: The `parse_obj` method is deprecated; use `model_validate` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ res_parsed = MappingResponse.parse_obj(res.json()) tests/test_web/test_api.py::TestWeb::test_iri_mapping /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/tests/test_web/test_api.py:255: PydanticDeprecatedSince20: The `parse_obj` method is deprecated; use `model_validate` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ data = URIResponse.parse_obj(res.json()) tests/test_web/test_api.py::TestWeb::test_ui_resource_rdf tests/test_web/test_ui.py::TestUI::test_ui_collection_rdf tests/test_web/test_ui.py::TestUI::test_ui_registry_rdf /usr/lib/python3/dist-packages/rdflib/plugins/parsers/notation3.py:2050: DeprecationWarning: ConjunctiveGraph is deprecated, use Dataset instead. conj_graph = ConjunctiveGraph(store=graph.store) tests/test_web/test_ui.py::TestUI::test_ui /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/app/ui.py:274: PydanticDeprecatedSince20: The `schema` method is deprecated; use `model_json_schema` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ schema=Context.schema(), tests/test_web/test_ui.py::TestUI::test_ui /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/app/ui.py:288: PydanticDeprecatedSince20: The `schema` method is deprecated; use `model_json_schema` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ schema=Context.schema()["properties"], tests/test_web/test_ui.py: 22 warnings /usr/lib/python3/dist-packages/jinja2/environment.py:490: PydanticDeprecatedSince20: The `__fields__` attribute is deprecated, use `model_fields` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ return getattr(obj, attribute) tests/test_web/test_ui.py::TestUI::test_ui_collection_json /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/app/utils.py:181: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ json.dumps(data.dict(exclude_unset=True, exclude_none=True), ensure_ascii=False), tests/test_web/test_ui.py::TestUI::test_ui_collection_json /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/app/utils.py:186: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ yaml.safe_dump(data.dict(exclude_unset=True, exclude_none=True), allow_unicode=True), -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html == 125 passed, 6 skipped, 6 deselected, 1450840 warnings in 311.52s (0:05:11) == create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-bioregistry/ -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir debian/rules execute_after_dh_auto_install make[1]: Entering directory '/build/reproducible-path/python-bioregistry-0.11.12' sed -i 's#https://raw.githubusercontent.com/biopragmatics/bioregistry/main/docs/img/#file://#' \ debian/python3-bioregistry/usr/lib/python3*/dist-packages/bioregistry/app/templates/meta/summary.html make[1]: Leaving directory '/build/reproducible-path/python-bioregistry-0.11.12' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-bioregistry' in '../python3-bioregistry_0.11.12-3_all.deb'. dpkg-genbuildinfo --build=binary -O../python-bioregistry_0.11.12-3_i386.buildinfo dpkg-genchanges --build=binary -O../python-bioregistry_0.11.12-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from python-bioregistry-0.11.12/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/43544 and its subdirectories I: Current time: Sun Apr 12 01:32:52 -12 2026 I: pbuilder-time-stamp: 1776000772 Sun Apr 12 13:32:52 UTC 2026 I: Signing ./b1/python-bioregistry_0.11.12-3_i386.buildinfo as python-bioregistry_0.11.12-3_i386.buildinfo.asc Sun Apr 12 13:32:52 UTC 2026 I: Signed ./b1/python-bioregistry_0.11.12-3_i386.buildinfo as ./b1/python-bioregistry_0.11.12-3_i386.buildinfo.asc Sun Apr 12 13:32:52 UTC 2026 - build #1 for python-bioregistry/trixie/i386 on ionos16-i386 done. Starting cleanup. All cleanup done. Sun Apr 12 13:32:52 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-ow5uYvRW, removing. /srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Mar 10 07:09 b1 drwxr-xr-x 2 jenkins jenkins 4096 Mar 10 07:03 b2 -rw-r--r-- 1 jenkins jenkins 2627 Sep 11 11:03 python-bioregistry_0.11.12-3.dsc -rw------- 1 jenkins jenkins 3808 Mar 10 07:03 rbuildlog.A4J8wXt /srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22/b1: total 3996 -rw-r--r-- 1 jenkins jenkins 139452 Mar 10 07:09 build.log -rw-r--r-- 1 jenkins jenkins 7760 Mar 10 07:09 python-bioregistry_0.11.12-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2627 Mar 10 07:09 python-bioregistry_0.11.12-3.dsc -rw-r--r-- 1 jenkins jenkins 7796 Mar 10 07:09 python-bioregistry_0.11.12-3_i386.buildinfo -rw-r--r-- 1 jenkins jenkins 8678 Mar 10 07:09 python-bioregistry_0.11.12-3_i386.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1206 Mar 10 07:09 python-bioregistry_0.11.12-3_i386.changes -rw-r--r-- 1 jenkins jenkins 1359 Mar 10 07:09 python-bioregistry_0.11.12-3_source.changes -rw-r--r-- 1 jenkins jenkins 3907148 Mar 10 07:09 python3-bioregistry_0.11.12-3_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22/b2: total 0 Mon Mar 10 07:09:57 UTC 2025 I: Deleting $TMPDIR on ionos16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Apr 12 01:26:22 -12 2026 I: pbuilder-time-stamp: 1776000382 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [python-bioregistry_0.11.12-3.dsc] I: copying [./python-bioregistry_0.11.12.orig.tar.gz] I: copying [./python-bioregistry_0.11.12-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-bioregistry_0.11.12-3.dsc: unsupported subcommand dpkg-source: info: extracting python-bioregistry in python-bioregistry-0.11.12 dpkg-source: info: unpacking python-bioregistry_0.11.12.orig.tar.gz dpkg-source: info: unpacking python-bioregistry_0.11.12-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying privacy-breach.patch dpkg-source: info: applying vendor_more_click.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/43544/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='9d47ecf4f95243839a890a0f1a572362' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='43544' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22/pbuilderrc_6ZGZ --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22/b1 --logfile b1/build.log python-bioregistry_0.11.12-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos16-i386 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/43544/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all, python3-bs4, python3-click, python3-curies, python3-defusedxml, python3-fastapi, python3-flask-bootstrap, python3-httpx, python3-markdown, python3-more-itertools, python3-pandas, python3-pydantic, python3-pystow, python3-pytest, python3-rdflib, python3-rdflib-endpoint, python3-setuptools, python3-tabulate, python3-tqdm, python3-yaml dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19787 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-bs4; however: Package python3-bs4 is not installed. pbuilder-satisfydepends-dummy depends on python3-click; however: Package python3-click is not installed. pbuilder-satisfydepends-dummy depends on python3-curies; however: Package python3-curies is not installed. pbuilder-satisfydepends-dummy depends on python3-defusedxml; however: Package python3-defusedxml is not installed. pbuilder-satisfydepends-dummy depends on python3-fastapi; however: Package python3-fastapi is not installed. pbuilder-satisfydepends-dummy depends on python3-flask-bootstrap; however: Package python3-flask-bootstrap is not installed. pbuilder-satisfydepends-dummy depends on python3-httpx; however: Package python3-httpx is not installed. pbuilder-satisfydepends-dummy depends on python3-markdown; however: Package python3-markdown is not installed. pbuilder-satisfydepends-dummy depends on python3-more-itertools; however: Package python3-more-itertools is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pydantic; however: Package python3-pydantic is not installed. pbuilder-satisfydepends-dummy depends on python3-pystow; however: Package python3-pystow is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-rdflib; however: Package python3-rdflib is not installed. pbuilder-satisfydepends-dummy depends on python3-rdflib-endpoint; however: Package python3-rdflib-endpoint is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-tabulate; however: Package python3-tabulate is not installed. pbuilder-satisfydepends-dummy depends on python3-tqdm; however: Package python3-tqdm is not installed. pbuilder-satisfydepends-dummy depends on python3-yaml; however: Package python3-yaml is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu72{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a} python3-annotated-types{a} python3-anyio{a} python3-autocommand{a} python3-blinker{a} python3-bs4{a} python3-build{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-curies{a} python3-dateutil{a} python3-defusedxml{a} python3-dnspython{a} python3-email-validator{a} python3-fastapi{a} python3-flask{a} python3-flask-bootstrap{a} python3-h11{a} python3-httpcore{a} python3-httpx{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-itsdangerous{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-markdown{a} python3-markdown-it{a} python3-markupsafe{a} python3-mdurl{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-pluggy{a} python3-pydantic{a} python3-pydantic-core{a} python3-pygments{a} python3-pyparsing{a} python3-pyproject-hooks{a} python3-pystow{a} python3-pytest{a} python3-pytz{a} python3-rdflib{a} python3-rdflib-endpoint{a} python3-requests{a} python3-rich{a} python3-setuptools{a} python3-sniffio{a} python3-sortedcontainers{a} python3-soupsieve{a} python3-starlette{a} python3-tabulate{a} python3-toml{a} python3-tqdm{a} python3-trie{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-urllib3{a} python3-uvicorn{a} python3-uvloop{a} python3-werkzeug{a} python3-wheel{a} python3-wsproto{a} python3-wtforms{a} python3-yaml{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-aiofiles python3-asgiref python3-babel python3-bottleneck python3-cryptography python3-dotenv python3-h2 python3-html5lib python3-html5rdf python3-lxml python3-matplotlib python3-networkx python3-numexpr python3-odf python3-openpyxl python3-openssl python3-orjson python3-pyinotify python3-python-multipart python3-scipy python3-tables wget 0 packages upgraded, 129 newly installed, 0 to remove and 0 not upgraded. Need to get 54.6 MB of archives. After unpacking 263 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 libpython3.13-minimal i386 3.13.2-1 [859 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.4-1 [107 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 python3.13-minimal i386 3.13.2-1 [2266 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.13.2-1 [27.1 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 media-types all 12.0.0 [28.9 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 tzdata all 2025a-2 [259 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 libffi8 i386 3.4.7-1 [21.4 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 libreadline8t64 i386 8.2-6 [173 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libpython3.13-stdlib i386 3.13.2-1 [1985 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 python3.13 i386 3.13.2-1 [745 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.13.2-1 [10.0 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 python3 i386 3.13.2-1 [28.1 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 python3-numpy-dev i386 1:2.2.3+ds-2+b1 [145 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libblas3 i386 3.12.1-2 [150 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 libgfortran5 i386 14.2.0-17 [735 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 liblapack3 i386 3.12.1-2 [2198 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 python3-numpy i386 1:2.2.3+ds-2+b1 [5060 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 openssl i386 3.4.1-1 [1432 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 ca-certificates all 20241223 [164 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.23.1-1 [245 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-7 [1199 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.4-5 [96.5 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-7 [301 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 automake all 1:1.17-3 [862 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 autopoint all 0.23.1-1 [770 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 libtool all 2.5.4-4 [539 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 43 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 libunistring5 i386 1.3-1 [458 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-6 [9582 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b2 [734 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 gettext i386 0.23.1-1 [1714 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 debhelper all 13.24.1 [920 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 python3-inflect all 7.3.1-2 [32.4 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 58 http://deb.debian.org/debian trixie/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 python3-pkg-resources all 75.8.0-1 [222 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 python3-zipp all 3.21.0-1 [10.6 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 python3-setuptools all 75.8.0-1 [724 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 dh-python all 6.20250108 [113 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 libuv1t64 i386 1.50.0-2 [163 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 libyaml-0-2 i386 0.2.5-2 [55.8 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 python3-packaging all 24.2-1 [55.3 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 python3-toml all 0.10.2-1 [16.2 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 python3-wheel all 0.45.1-1 [56.7 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 python3-build all 1.2.2-1 [36.0 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 pybuild-plugin-pyproject all 6.20250108 [11.6 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 python3-all i386 3.13.2-1 [1048 B] Get: 74 http://deb.debian.org/debian trixie/main i386 python3-annotated-types all 0.7.0-1 [18.8 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 python3-idna all 3.10-1 [42.0 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 python3-sniffio all 1.3.1-1 [7120 B] Get: 77 http://deb.debian.org/debian trixie/main i386 python3-anyio all 4.7.0-1 [61.8 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 python3-blinker all 1.9.0-1 [12.6 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 python3-soupsieve all 2.6-1 [38.3 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 python3-bs4 all 4.13.3-1 [166 kB] Get: 81 http://deb.debian.org/debian trixie/main i386 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 82 http://deb.debian.org/debian trixie/main i386 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 python3-charset-normalizer i386 3.4.1-1+b1 [127 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 python3-click all 8.2.0+0.really.8.1.8-1 [95.4 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 python3-pydantic-core i386 2.27.2-1+b2 [1454 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 python3-dnspython all 2.7.0-1 [164 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 python3-email-validator all 2.2.0-1 [31.6 kB] Get: 88 http://deb.debian.org/debian trixie/main i386 python3-pydantic i386 2.10.6-1 [346 kB] Get: 89 http://deb.debian.org/debian trixie/main i386 python3-sortedcontainers all 2.4.0-2 [31.9 kB] Get: 90 http://deb.debian.org/debian trixie/main i386 python3-trie all 0.4.0+ds-1 [7640 B] Get: 91 http://deb.debian.org/debian trixie/main i386 python3-curies all 0.9.0-1 [38.3 kB] Get: 92 http://deb.debian.org/debian trixie/main i386 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 93 http://deb.debian.org/debian trixie/main i386 python3-defusedxml all 0.7.1-3 [43.4 kB] Get: 94 http://deb.debian.org/debian trixie/main i386 python3-starlette all 0.41.3-2 [51.2 kB] Get: 95 http://deb.debian.org/debian trixie/main i386 python3-h11 all 0.14.0-1 [50.1 kB] Get: 96 http://deb.debian.org/debian trixie/main i386 python3-wsproto all 1.2.0-1 [25.4 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 python3-uvloop i386 0.21.0+ds1-2+b1 [564 kB] Get: 98 http://deb.debian.org/debian trixie/main i386 python3-uvicorn all 0.32.0-2 [50.8 kB] Get: 99 http://deb.debian.org/debian trixie/main i386 python3-fastapi all 0.115.11-3 [73.4 kB] Get: 100 http://deb.debian.org/debian trixie/main i386 python3-itsdangerous all 2.2.0-2 [18.1 kB] Get: 101 http://deb.debian.org/debian trixie/main i386 python3-markupsafe i386 2.1.5-1+b3 [14.0 kB] Get: 102 http://deb.debian.org/debian trixie/main i386 python3-jinja2 all 3.1.5-2 [107 kB] Get: 103 http://deb.debian.org/debian trixie/main i386 python3-werkzeug all 3.1.3-2 [207 kB] Get: 104 http://deb.debian.org/debian trixie/main i386 python3-flask all 3.1.0-2 [106 kB] Get: 105 http://deb.debian.org/debian trixie/main i386 python3-wtforms all 3.2.1-1 [68.8 kB] Get: 106 http://deb.debian.org/debian trixie/main i386 python3-flask-bootstrap all 2.4.1+ds-1 [1092 kB] Get: 107 http://deb.debian.org/debian trixie/main i386 python3-httpcore all 1.0.7-1 [44.7 kB] Get: 108 http://deb.debian.org/debian trixie/main i386 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 109 http://deb.debian.org/debian trixie/main i386 python3-mdurl all 0.1.2-1 [9444 B] Get: 110 http://deb.debian.org/debian trixie/main i386 python3-markdown-it all 3.0.0-2 [62.5 kB] Get: 111 http://deb.debian.org/debian trixie/main i386 python3-rich all 13.9.4-1 [203 kB] Get: 112 http://deb.debian.org/debian trixie/main i386 python3-httpx all 0.27.2-1 [77.6 kB] Get: 113 http://deb.debian.org/debian trixie/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Get: 114 http://deb.debian.org/debian trixie/main i386 python3-markdown all 3.7-2 [85.2 kB] Get: 115 http://deb.debian.org/debian trixie/main i386 python3-pytz all 2025.1-3 [150 kB] Get: 116 http://deb.debian.org/debian trixie/main i386 python3-tz all 2025.1-3 [4004 B] Get: 117 http://deb.debian.org/debian trixie/main i386 python3-pandas-lib i386 2.2.3+dfsg-8+b1 [4307 kB] Get: 118 http://deb.debian.org/debian trixie/main i386 python3-pandas all 2.2.3+dfsg-8 [3097 kB] Get: 119 http://deb.debian.org/debian trixie/main i386 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 120 http://deb.debian.org/debian trixie/main i386 python3-pyparsing all 3.1.2-1 [146 kB] Get: 121 http://deb.debian.org/debian trixie/main i386 python3-urllib3 all 2.3.0-1 [114 kB] Get: 122 http://deb.debian.org/debian trixie/main i386 python3-requests all 2.32.3+dfsg-4 [72.1 kB] Get: 123 http://deb.debian.org/debian trixie/main i386 python3-tqdm all 4.67.1-2 [91.1 kB] Get: 124 http://deb.debian.org/debian trixie/main i386 python3-pystow all 0.5.5-1 [25.6 kB] Get: 125 http://deb.debian.org/debian trixie/main i386 python3-pytest all 8.3.4-1 [250 kB] Get: 126 http://deb.debian.org/debian trixie/main i386 python3-rdflib all 7.1.1-2 [472 kB] Get: 127 http://deb.debian.org/debian trixie/main i386 python3-rdflib-endpoint all 0.5.1-2 [14.2 kB] Get: 128 http://deb.debian.org/debian trixie/main i386 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 129 http://deb.debian.org/debian trixie/main i386 python3-yaml i386 6.0.2-1+b2 [135 kB] Fetched 54.6 MB in 1s (46.9 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19787 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-1_i386.deb ... Unpacking libpython3.13-minimal:i386 (3.13.2-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.6.4-1_i386.deb ... Unpacking libexpat1:i386 (2.6.4-1) ... 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Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:i386. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_i386.deb ... Unpacking libpython3.13-stdlib:i386 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_i386.deb ... Unpacking python3.13 (3.13.2-1) ... Selecting previously unselected package libpython3-stdlib:i386. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-bioregistry-0.11.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-bioregistry_0.11.12-3_source.changes dpkg-buildpackage: info: source package python-bioregistry dpkg-buildpackage: info: source version 0.11.12-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 dpkg-source: info: using options from python-bioregistry-0.11.12/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13 * Building wheel... running bdist_wheel running build running build_py creating build/lib/bioregistry copying src/bioregistry/metaresource_api.py -> build/lib/bioregistry copying src/bioregistry/license_standardizer.py -> build/lib/bioregistry copying src/bioregistry/lint.py -> build/lib/bioregistry copying src/bioregistry/resource_manager.py -> build/lib/bioregistry copying src/bioregistry/version.py -> build/lib/bioregistry copying src/bioregistry/constants.py -> build/lib/bioregistry copying src/bioregistry/compare.py -> build/lib/bioregistry copying src/bioregistry/pandas.py -> build/lib/bioregistry copying src/bioregistry/resolve_identifier.py -> build/lib/bioregistry copying src/bioregistry/bibliometrics.py -> build/lib/bioregistry copying src/bioregistry/__main__.py -> build/lib/bioregistry copying src/bioregistry/record_accumulator.py -> build/lib/bioregistry copying src/bioregistry/resolve.py -> build/lib/bioregistry copying src/bioregistry/summary.py -> build/lib/bioregistry copying src/bioregistry/parse_iri.py -> build/lib/bioregistry copying src/bioregistry/__init__.py -> build/lib/bioregistry copying src/bioregistry/schema_utils.py -> build/lib/bioregistry copying src/bioregistry/collection_api.py -> build/lib/bioregistry copying src/bioregistry/utils.py -> build/lib/bioregistry copying src/bioregistry/uri_format.py -> build/lib/bioregistry copying src/bioregistry/upload_ndex.py -> build/lib/bioregistry copying src/bioregistry/parse_version_iri.py -> build/lib/bioregistry copying src/bioregistry/cli.py -> build/lib/bioregistry creating build/lib/bioregistry/gh copying src/bioregistry/gh/github_client.py -> build/lib/bioregistry/gh copying src/bioregistry/gh/__init__.py -> build/lib/bioregistry/gh copying src/bioregistry/gh/new_prefix.py -> build/lib/bioregistry/gh creating build/lib/bioregistry/curation copying src/bioregistry/curation/add_examples.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/clean_publications.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/cleanup_authors.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/import_pc_semiautomatic.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/map_bartoc_via_wikidata.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/fix_obo_purls.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_examples_from_ols.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/suggest_uniprot_providers.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/clean_name_suffixes.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_descriptions_from_gs.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_examples_from_javert.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/deprecation_diff.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_ontology_regexes.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/__init__.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/clean_licenses.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/map_re3data_via_fairsharing.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/rename_metaprefix.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/review_pc.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/make_health_report_curation_sheet.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/suggest_author_curation.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/enrich_publications.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/make_description_curation_sheet.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/bulk_import.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_co_providers.py -> build/lib/bioregistry/curation creating build/lib/bioregistry/external copying src/bioregistry/external/align.py -> build/lib/bioregistry/external copying src/bioregistry/external/__init__.py -> build/lib/bioregistry/external copying src/bioregistry/external/alignment_utils.py -> build/lib/bioregistry/external creating build/lib/bioregistry/schema copying src/bioregistry/schema/constants.py -> build/lib/bioregistry/schema copying src/bioregistry/schema/__init__.py -> build/lib/bioregistry/schema copying src/bioregistry/schema/utils.py -> build/lib/bioregistry/schema copying src/bioregistry/schema/struct.py -> build/lib/bioregistry/schema creating build/lib/bioregistry/health copying src/bioregistry/health/check_providers.py -> build/lib/bioregistry/health copying src/bioregistry/health/check_homepages.py -> build/lib/bioregistry/health copying src/bioregistry/health/__main__.py -> build/lib/bioregistry/health copying src/bioregistry/health/__init__.py -> build/lib/bioregistry/health copying src/bioregistry/health/cli.py -> build/lib/bioregistry/health creating build/lib/bioregistry/app copying src/bioregistry/app/constants.py -> build/lib/bioregistry/app copying src/bioregistry/app/test.py -> build/lib/bioregistry/app copying src/bioregistry/app/ui.py -> build/lib/bioregistry/app copying src/bioregistry/app/proxies.py -> build/lib/bioregistry/app copying src/bioregistry/app/__init__.py -> build/lib/bioregistry/app copying src/bioregistry/app/wsgi.py -> build/lib/bioregistry/app copying src/bioregistry/app/utils.py -> build/lib/bioregistry/app copying src/bioregistry/app/impl.py -> build/lib/bioregistry/app copying src/bioregistry/app/api.py -> build/lib/bioregistry/app copying src/bioregistry/app/cli.py -> build/lib/bioregistry/app creating build/lib/bioregistry/export copying src/bioregistry/export/rdf_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/tsv_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/sssom_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/__main__.py -> build/lib/bioregistry/export copying src/bioregistry/export/__init__.py -> build/lib/bioregistry/export copying src/bioregistry/export/yaml_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/schema_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/warnings_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/prefix_maps.py -> build/lib/bioregistry/export copying src/bioregistry/export/prefixcc.py -> build/lib/bioregistry/export copying src/bioregistry/export/cli.py -> build/lib/bioregistry/export copying src/bioregistry/export/tables_export.py -> build/lib/bioregistry/export creating build/lib/bioregistry/analysis copying src/bioregistry/analysis/bioregistry_diff.py -> build/lib/bioregistry/analysis copying src/bioregistry/analysis/__init__.py -> build/lib/bioregistry/analysis copying src/bioregistry/analysis/paper_ranking.py -> build/lib/bioregistry/analysis creating build/lib/bioregistry/data copying src/bioregistry/data/__init__.py -> build/lib/bioregistry/data creating build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/__main__.py -> build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/uri_parsing.py -> build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/__init__.py -> build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/curie_parsing.py -> build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/curie_validation.py -> build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/cli.py -> build/lib/bioregistry/benchmarks creating build/lib/bioregistry/external/re3data copying src/bioregistry/external/re3data/__init__.py -> build/lib/bioregistry/external/re3data creating build/lib/bioregistry/external/miriam copying src/bioregistry/external/miriam/__init__.py -> build/lib/bioregistry/external/miriam creating build/lib/bioregistry/external/togoid copying src/bioregistry/external/togoid/__init__.py -> build/lib/bioregistry/external/togoid creating build/lib/bioregistry/external/zazuko copying src/bioregistry/external/zazuko/__init__.py -> build/lib/bioregistry/external/zazuko creating build/lib/bioregistry/external/pathguide copying src/bioregistry/external/pathguide/__init__.py -> build/lib/bioregistry/external/pathguide creating build/lib/bioregistry/external/biocontext copying src/bioregistry/external/biocontext/__init__.py -> build/lib/bioregistry/external/biocontext creating build/lib/bioregistry/external/bartoc copying src/bioregistry/external/bartoc/__init__.py -> build/lib/bioregistry/external/bartoc creating build/lib/bioregistry/external/go copying src/bioregistry/external/go/__init__.py -> build/lib/bioregistry/external/go creating build/lib/bioregistry/external/aberowl copying src/bioregistry/external/aberowl/__init__.py -> build/lib/bioregistry/external/aberowl creating build/lib/bioregistry/external/fairsharing copying src/bioregistry/external/fairsharing/__init__.py -> build/lib/bioregistry/external/fairsharing creating build/lib/bioregistry/external/integbio copying src/bioregistry/external/integbio/__init__.py -> build/lib/bioregistry/external/integbio creating build/lib/bioregistry/external/wikidata copying src/bioregistry/external/wikidata/__init__.py -> build/lib/bioregistry/external/wikidata creating build/lib/bioregistry/external/lov copying src/bioregistry/external/lov/__init__.py -> build/lib/bioregistry/external/lov creating build/lib/bioregistry/external/ncbi copying src/bioregistry/external/ncbi/__init__.py -> build/lib/bioregistry/external/ncbi creating build/lib/bioregistry/external/biolink copying src/bioregistry/external/biolink/__init__.py -> build/lib/bioregistry/external/biolink creating build/lib/bioregistry/external/hl7 copying src/bioregistry/external/hl7/__init__.py -> build/lib/bioregistry/external/hl7 creating build/lib/bioregistry/external/cellosaurus copying src/bioregistry/external/cellosaurus/__init__.py -> build/lib/bioregistry/external/cellosaurus creating build/lib/bioregistry/external/prefixcommons copying src/bioregistry/external/prefixcommons/__init__.py -> build/lib/bioregistry/external/prefixcommons creating build/lib/bioregistry/external/cropoct copying src/bioregistry/external/cropoct/__init__.py -> build/lib/bioregistry/external/cropoct creating build/lib/bioregistry/external/obofoundry copying src/bioregistry/external/obofoundry/__init__.py -> build/lib/bioregistry/external/obofoundry creating build/lib/bioregistry/external/edam copying src/bioregistry/external/edam/__init__.py -> build/lib/bioregistry/external/edam creating build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/agroportal.py -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/ecoportal.py -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/__init__.py -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/bioportal.py -> build/lib/bioregistry/external/bioportal creating build/lib/bioregistry/external/ontobee copying src/bioregistry/external/ontobee/__init__.py -> build/lib/bioregistry/external/ontobee creating build/lib/bioregistry/external/n2t copying src/bioregistry/external/n2t/__init__.py -> build/lib/bioregistry/external/n2t creating build/lib/bioregistry/external/uniprot copying src/bioregistry/external/uniprot/__init__.py -> build/lib/bioregistry/external/uniprot creating build/lib/bioregistry/external/rrid copying src/bioregistry/external/rrid/__init__.py -> build/lib/bioregistry/external/rrid creating build/lib/bioregistry/external/ols copying src/bioregistry/external/ols/__init__.py -> build/lib/bioregistry/external/ols creating build/lib/bioregistry/external/cheminf copying src/bioregistry/external/cheminf/__init__.py -> build/lib/bioregistry/external/cheminf running egg_info creating src/bioregistry.egg-info writing src/bioregistry.egg-info/PKG-INFO writing dependency_links to src/bioregistry.egg-info/dependency_links.txt writing entry points to src/bioregistry.egg-info/entry_points.txt writing requirements to src/bioregistry.egg-info/requires.txt writing top-level names to src/bioregistry.egg-info/top_level.txt writing manifest file 'src/bioregistry.egg-info/SOURCES.txt' reading manifest file 'src/bioregistry.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'Makefile' under directory 'docs' warning: no previously-included files matching '*.png' found under directory 'docs/img' warning: no previously-included files matching '*.py[cod]' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.dylib' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.gpickle' found anywhere in distribution no previously-included directories found matching 'docs/build' no previously-included directories found matching 'docs/_data' no previously-included directories found matching 'docs/source/api' no previously-included directories found matching 'exports' no previously-included directories found matching 'notebooks' no previously-included directories found matching 'tests/.pytest_cache' warning: no previously-included files found matching 'docs/*.md' warning: no previously-included files found matching 'docs/guides/*.md' warning: no previously-included files found matching 'docs/_config.yml' warning: no previously-included files found matching '.appveyor.yml' warning: no previously-included files found matching '.bumpversion.cfg' warning: no previously-included files found matching '.coveragerc' warning: no previously-included files found matching '.flake8' warning: no previously-included files found matching '.travis.yml' warning: no previously-included files found matching '.readthedocs.yml' warning: no previously-included files found matching 'tox.ini' warning: no previously-included files found matching '.pre-commit-config.yaml' warning: no previously-included files found matching 'Dockerfile' warning: no previously-included files found matching 'CITATION.cff' warning: no files found matching '*.rst' adding license file 'LICENSE' writing manifest file 'src/bioregistry.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bioregistry.app.static' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'bioregistry.app.static' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'bioregistry.app.static' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'bioregistry.app.static' to be distributed and are already explicitly excluding 'bioregistry.app.static' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bioregistry.app.templates' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'bioregistry.app.templates' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'bioregistry.app.templates' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'bioregistry.app.templates' to be distributed and are already explicitly excluding 'bioregistry.app.templates' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bioregistry.app.templates.highlights' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'bioregistry.app.templates.highlights' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'bioregistry.app.templates.highlights' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'bioregistry.app.templates.highlights' to be distributed and are already explicitly excluding 'bioregistry.app.templates.highlights' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bioregistry.app.templates.meta' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'bioregistry.app.templates.meta' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'bioregistry.app.templates.meta' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'bioregistry.app.templates.meta' to be distributed and are already explicitly excluding 'bioregistry.app.templates.meta' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bioregistry.app.templates.resolve_errors' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'bioregistry.app.templates.resolve_errors' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'bioregistry.app.templates.resolve_errors' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'bioregistry.app.templates.resolve_errors' to be distributed and are already explicitly excluding 'bioregistry.app.templates.resolve_errors' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying src/bioregistry/py.typed -> build/lib/bioregistry copying src/bioregistry/curation/curated_papers.csv -> build/lib/bioregistry/curation copying src/bioregistry/schema/schema.json -> build/lib/bioregistry/schema creating build/lib/bioregistry/app/static copying src/bioregistry/app/static/logo.svg -> build/lib/bioregistry/app/static creating build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/base.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/collection.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/collections.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/context.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/contexts.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/contributor.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/contributors.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/home.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/macros.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/metaresource.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/metaresources.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/prose.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/reference.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/resource.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/resources.html -> build/lib/bioregistry/app/templates creating build/lib/bioregistry/app/templates/highlights copying src/bioregistry/app/templates/highlights/keywords.html -> build/lib/bioregistry/app/templates/highlights copying src/bioregistry/app/templates/highlights/owners.html -> build/lib/bioregistry/app/templates/highlights copying src/bioregistry/app/templates/highlights/relations.html -> build/lib/bioregistry/app/templates/highlights copying src/bioregistry/app/templates/highlights/twitter.html -> build/lib/bioregistry/app/templates/highlights creating build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/access.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/acknowledgements.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/download.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/related.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/schema.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/summary.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/sustainability.html -> build/lib/bioregistry/app/templates/meta creating build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/app/templates/resolve_errors/disallowed_identifier.html -> build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/app/templates/resolve_errors/invalid_identifier.html -> build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/app/templates/resolve_errors/missing_prefix.html -> build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/app/templates/resolve_errors/missing_providers.html -> build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/analysis/paper_ranking_requirements.txt -> build/lib/bioregistry/analysis copying src/bioregistry/data/README.md -> build/lib/bioregistry/data copying src/bioregistry/data/bioregistry.json -> build/lib/bioregistry/data copying src/bioregistry/data/collections.json -> build/lib/bioregistry/data copying src/bioregistry/data/contexts.json -> build/lib/bioregistry/data copying src/bioregistry/data/metaregistry.json -> build/lib/bioregistry/data copying src/bioregistry/data/mismatch.json -> build/lib/bioregistry/data copying src/bioregistry/external/re3data/processed.json -> build/lib/bioregistry/external/re3data copying src/bioregistry/external/miriam/processed.json -> build/lib/bioregistry/external/miriam copying src/bioregistry/external/togoid/processed.json -> build/lib/bioregistry/external/togoid copying src/bioregistry/external/zazuko/processed.json -> build/lib/bioregistry/external/zazuko copying src/bioregistry/external/biocontext/processed.json -> build/lib/bioregistry/external/biocontext copying src/bioregistry/external/bartoc/processed.json -> build/lib/bioregistry/external/bartoc copying src/bioregistry/external/go/processed.json -> build/lib/bioregistry/external/go copying src/bioregistry/external/go/processing_go.json -> build/lib/bioregistry/external/go copying src/bioregistry/external/aberowl/processed.json -> build/lib/bioregistry/external/aberowl copying src/bioregistry/external/fairsharing/processed.json -> build/lib/bioregistry/external/fairsharing copying src/bioregistry/external/integbio/processed.json -> build/lib/bioregistry/external/integbio copying src/bioregistry/external/wikidata/processed.json -> build/lib/bioregistry/external/wikidata copying src/bioregistry/external/lov/processed.json -> build/lib/bioregistry/external/lov copying src/bioregistry/external/ncbi/processed.json -> build/lib/bioregistry/external/ncbi copying src/bioregistry/external/biolink/processed.json -> build/lib/bioregistry/external/biolink copying src/bioregistry/external/biolink/processing_biolink.json -> build/lib/bioregistry/external/biolink copying src/bioregistry/external/hl7/OID_Report.csv -> build/lib/bioregistry/external/hl7 copying src/bioregistry/external/cellosaurus/processed.json -> build/lib/bioregistry/external/cellosaurus copying src/bioregistry/external/prefixcommons/processed.json -> build/lib/bioregistry/external/prefixcommons copying src/bioregistry/external/cropoct/processed.json -> build/lib/bioregistry/external/cropoct copying src/bioregistry/external/obofoundry/processed.json -> build/lib/bioregistry/external/obofoundry copying src/bioregistry/external/edam/processed.json -> build/lib/bioregistry/external/edam copying src/bioregistry/external/bioportal/agroportal.json -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/bioportal.json -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/ecoportal.json -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/ontobee/processed.json -> build/lib/bioregistry/external/ontobee copying src/bioregistry/external/n2t/processed.json -> build/lib/bioregistry/external/n2t copying src/bioregistry/external/uniprot/processed.json -> build/lib/bioregistry/external/uniprot copying src/bioregistry/external/ols/processed.json -> build/lib/bioregistry/external/ols copying src/bioregistry/external/ols/processing_ols.json -> build/lib/bioregistry/external/ols copying src/bioregistry/external/cheminf/processed.json -> build/lib/bioregistry/external/cheminf installing to build/bdist.linux-i686/wheel running install running install_lib creating build/bdist.linux-i686/wheel creating build/bdist.linux-i686/wheel/bioregistry copying build/lib/bioregistry/metaresource_api.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/license_standardizer.py -> build/bdist.linux-i686/wheel/./bioregistry creating build/bdist.linux-i686/wheel/bioregistry/gh copying build/lib/bioregistry/gh/github_client.py -> build/bdist.linux-i686/wheel/./bioregistry/gh copying build/lib/bioregistry/gh/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/gh copying build/lib/bioregistry/gh/new_prefix.py -> build/bdist.linux-i686/wheel/./bioregistry/gh creating build/bdist.linux-i686/wheel/bioregistry/curation copying build/lib/bioregistry/curation/add_examples.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/clean_publications.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/cleanup_authors.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/import_pc_semiautomatic.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/map_bartoc_via_wikidata.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/fix_obo_purls.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_examples_from_ols.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/suggest_uniprot_providers.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/clean_name_suffixes.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_descriptions_from_gs.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_examples_from_javert.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/deprecation_diff.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_ontology_regexes.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/clean_licenses.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/curated_papers.csv -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/map_re3data_via_fairsharing.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/rename_metaprefix.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/review_pc.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/make_health_report_curation_sheet.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/suggest_author_curation.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/enrich_publications.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/make_description_curation_sheet.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/bulk_import.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_co_providers.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/lint.py -> build/bdist.linux-i686/wheel/./bioregistry creating build/bdist.linux-i686/wheel/bioregistry/external creating build/bdist.linux-i686/wheel/bioregistry/external/re3data copying build/lib/bioregistry/external/re3data/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/re3data copying build/lib/bioregistry/external/re3data/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/re3data creating build/bdist.linux-i686/wheel/bioregistry/external/miriam copying build/lib/bioregistry/external/miriam/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/miriam copying build/lib/bioregistry/external/miriam/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/miriam creating build/bdist.linux-i686/wheel/bioregistry/external/togoid copying build/lib/bioregistry/external/togoid/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/togoid copying build/lib/bioregistry/external/togoid/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/togoid creating build/bdist.linux-i686/wheel/bioregistry/external/zazuko copying build/lib/bioregistry/external/zazuko/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/zazuko copying build/lib/bioregistry/external/zazuko/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/zazuko copying build/lib/bioregistry/external/align.py -> build/bdist.linux-i686/wheel/./bioregistry/external creating build/bdist.linux-i686/wheel/bioregistry/external/pathguide copying build/lib/bioregistry/external/pathguide/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/pathguide creating build/bdist.linux-i686/wheel/bioregistry/external/biocontext copying build/lib/bioregistry/external/biocontext/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/biocontext copying build/lib/bioregistry/external/biocontext/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/biocontext creating build/bdist.linux-i686/wheel/bioregistry/external/bartoc copying build/lib/bioregistry/external/bartoc/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/bartoc copying build/lib/bioregistry/external/bartoc/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/bartoc creating build/bdist.linux-i686/wheel/bioregistry/external/go copying build/lib/bioregistry/external/go/processing_go.json -> build/bdist.linux-i686/wheel/./bioregistry/external/go copying build/lib/bioregistry/external/go/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/go copying build/lib/bioregistry/external/go/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/go creating build/bdist.linux-i686/wheel/bioregistry/external/aberowl copying build/lib/bioregistry/external/aberowl/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/aberowl copying build/lib/bioregistry/external/aberowl/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/aberowl creating build/bdist.linux-i686/wheel/bioregistry/external/fairsharing copying build/lib/bioregistry/external/fairsharing/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/fairsharing copying build/lib/bioregistry/external/fairsharing/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/fairsharing creating build/bdist.linux-i686/wheel/bioregistry/external/integbio copying build/lib/bioregistry/external/integbio/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/integbio copying build/lib/bioregistry/external/integbio/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/integbio creating build/bdist.linux-i686/wheel/bioregistry/external/wikidata copying build/lib/bioregistry/external/wikidata/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/wikidata copying build/lib/bioregistry/external/wikidata/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/wikidata creating build/bdist.linux-i686/wheel/bioregistry/external/lov copying build/lib/bioregistry/external/lov/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/lov copying build/lib/bioregistry/external/lov/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/lov creating build/bdist.linux-i686/wheel/bioregistry/external/ncbi copying build/lib/bioregistry/external/ncbi/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/ncbi copying build/lib/bioregistry/external/ncbi/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/ncbi creating build/bdist.linux-i686/wheel/bioregistry/external/biolink copying build/lib/bioregistry/external/biolink/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/biolink copying build/lib/bioregistry/external/biolink/processing_biolink.json -> build/bdist.linux-i686/wheel/./bioregistry/external/biolink copying build/lib/bioregistry/external/biolink/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/biolink copying build/lib/bioregistry/external/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external creating build/bdist.linux-i686/wheel/bioregistry/external/hl7 copying build/lib/bioregistry/external/hl7/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/hl7 copying build/lib/bioregistry/external/hl7/OID_Report.csv -> build/bdist.linux-i686/wheel/./bioregistry/external/hl7 creating build/bdist.linux-i686/wheel/bioregistry/external/cellosaurus copying build/lib/bioregistry/external/cellosaurus/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/cellosaurus copying build/lib/bioregistry/external/cellosaurus/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/cellosaurus creating build/bdist.linux-i686/wheel/bioregistry/external/prefixcommons copying build/lib/bioregistry/external/prefixcommons/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/prefixcommons copying build/lib/bioregistry/external/prefixcommons/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/prefixcommons creating build/bdist.linux-i686/wheel/bioregistry/external/cropoct copying build/lib/bioregistry/external/cropoct/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/cropoct copying build/lib/bioregistry/external/cropoct/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/cropoct creating build/bdist.linux-i686/wheel/bioregistry/external/obofoundry copying build/lib/bioregistry/external/obofoundry/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/obofoundry copying build/lib/bioregistry/external/obofoundry/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/obofoundry copying build/lib/bioregistry/external/alignment_utils.py -> build/bdist.linux-i686/wheel/./bioregistry/external creating build/bdist.linux-i686/wheel/bioregistry/external/edam copying build/lib/bioregistry/external/edam/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/edam copying build/lib/bioregistry/external/edam/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/edam creating build/bdist.linux-i686/wheel/bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/agroportal.py -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/ecoportal.py -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/agroportal.json -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/bioportal.json -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/bioportal.py -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/ecoportal.json -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal creating build/bdist.linux-i686/wheel/bioregistry/external/ontobee copying build/lib/bioregistry/external/ontobee/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/ontobee copying build/lib/bioregistry/external/ontobee/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/ontobee creating build/bdist.linux-i686/wheel/bioregistry/external/n2t copying build/lib/bioregistry/external/n2t/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/n2t copying build/lib/bioregistry/external/n2t/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/n2t creating build/bdist.linux-i686/wheel/bioregistry/external/uniprot copying build/lib/bioregistry/external/uniprot/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/uniprot copying build/lib/bioregistry/external/uniprot/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/uniprot creating build/bdist.linux-i686/wheel/bioregistry/external/rrid copying build/lib/bioregistry/external/rrid/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/rrid creating build/bdist.linux-i686/wheel/bioregistry/external/ols copying build/lib/bioregistry/external/ols/processing_ols.json -> build/bdist.linux-i686/wheel/./bioregistry/external/ols copying build/lib/bioregistry/external/ols/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/ols copying build/lib/bioregistry/external/ols/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/ols creating build/bdist.linux-i686/wheel/bioregistry/external/cheminf copying build/lib/bioregistry/external/cheminf/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/cheminf copying build/lib/bioregistry/external/cheminf/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/cheminf copying build/lib/bioregistry/resource_manager.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/version.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/constants.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/compare.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/pandas.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/resolve_identifier.py -> build/bdist.linux-i686/wheel/./bioregistry creating build/bdist.linux-i686/wheel/bioregistry/schema copying build/lib/bioregistry/schema/constants.py -> build/bdist.linux-i686/wheel/./bioregistry/schema copying build/lib/bioregistry/schema/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/schema copying build/lib/bioregistry/schema/schema.json -> build/bdist.linux-i686/wheel/./bioregistry/schema copying build/lib/bioregistry/schema/utils.py -> build/bdist.linux-i686/wheel/./bioregistry/schema copying build/lib/bioregistry/schema/struct.py -> build/bdist.linux-i686/wheel/./bioregistry/schema copying build/lib/bioregistry/bibliometrics.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/__main__.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/record_accumulator.py -> build/bdist.linux-i686/wheel/./bioregistry creating build/bdist.linux-i686/wheel/bioregistry/health copying build/lib/bioregistry/health/check_providers.py -> build/bdist.linux-i686/wheel/./bioregistry/health copying build/lib/bioregistry/health/check_homepages.py -> build/bdist.linux-i686/wheel/./bioregistry/health copying build/lib/bioregistry/health/__main__.py -> build/bdist.linux-i686/wheel/./bioregistry/health copying build/lib/bioregistry/health/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/health copying build/lib/bioregistry/health/cli.py -> build/bdist.linux-i686/wheel/./bioregistry/health copying build/lib/bioregistry/resolve.py -> build/bdist.linux-i686/wheel/./bioregistry creating build/bdist.linux-i686/wheel/bioregistry/app creating build/bdist.linux-i686/wheel/bioregistry/app/templates copying build/lib/bioregistry/app/templates/collection.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/collections.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates creating build/bdist.linux-i686/wheel/bioregistry/app/templates/resolve_errors copying build/lib/bioregistry/app/templates/resolve_errors/disallowed_identifier.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/resolve_errors copying build/lib/bioregistry/app/templates/resolve_errors/invalid_identifier.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/resolve_errors copying build/lib/bioregistry/app/templates/resolve_errors/missing_providers.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/resolve_errors copying build/lib/bioregistry/app/templates/resolve_errors/missing_prefix.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/resolve_errors creating build/bdist.linux-i686/wheel/bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/highlights/relations.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/highlights/keywords.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/highlights/owners.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/highlights/twitter.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/resource.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/prose.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/base.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/contributor.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/home.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/macros.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/resources.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/contributors.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/metaresources.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates creating build/bdist.linux-i686/wheel/bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/related.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/download.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/acknowledgements.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/schema.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/access.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/sustainability.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/summary.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/context.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/contexts.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/metaresource.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/reference.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/constants.py -> build/bdist.linux-i686/wheel/./bioregistry/app copying build/lib/bioregistry/app/test.py -> build/bdist.linux-i686/wheel/./bioregistry/app copying build/lib/bioregistry/app/ui.py -> build/bdist.linux-i686/wheel/./bioregistry/app copying build/lib/bioregistry/app/proxies.py -> build/bdist.linux-i686/wheel/./bioregistry/app copying build/lib/bioregistry/app/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/app copying build/lib/bioregistry/app/wsgi.py -> build/bdist.linux-i686/wheel/./bioregistry/app creating build/bdist.linux-i686/wheel/bioregistry/app/static copying build/lib/bioregistry/app/static/logo.svg -> build/bdist.linux-i686/wheel/./bioregistry/app/static copying build/lib/bioregistry/app/utils.py -> build/bdist.linux-i686/wheel/./bioregistry/app copying build/lib/bioregistry/app/impl.py -> build/bdist.linux-i686/wheel/./bioregistry/app copying build/lib/bioregistry/app/api.py -> build/bdist.linux-i686/wheel/./bioregistry/app copying build/lib/bioregistry/app/cli.py -> build/bdist.linux-i686/wheel/./bioregistry/app copying build/lib/bioregistry/summary.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/parse_iri.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/py.typed -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry creating build/bdist.linux-i686/wheel/bioregistry/export copying build/lib/bioregistry/export/rdf_export.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/tsv_export.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/sssom_export.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/__main__.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/yaml_export.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/schema_export.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/warnings_export.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/prefix_maps.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/prefixcc.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/cli.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/tables_export.py -> build/bdist.linux-i686/wheel/./bioregistry/export creating build/bdist.linux-i686/wheel/bioregistry/analysis copying build/lib/bioregistry/analysis/paper_ranking_requirements.txt -> build/bdist.linux-i686/wheel/./bioregistry/analysis copying build/lib/bioregistry/analysis/bioregistry_diff.py -> build/bdist.linux-i686/wheel/./bioregistry/analysis copying build/lib/bioregistry/analysis/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/analysis copying build/lib/bioregistry/analysis/paper_ranking.py -> build/bdist.linux-i686/wheel/./bioregistry/analysis copying build/lib/bioregistry/schema_utils.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/collection_api.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/utils.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/uri_format.py -> build/bdist.linux-i686/wheel/./bioregistry creating build/bdist.linux-i686/wheel/bioregistry/data copying build/lib/bioregistry/data/contexts.json -> build/bdist.linux-i686/wheel/./bioregistry/data copying build/lib/bioregistry/data/metaregistry.json -> build/bdist.linux-i686/wheel/./bioregistry/data copying build/lib/bioregistry/data/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/data copying build/lib/bioregistry/data/bioregistry.json -> build/bdist.linux-i686/wheel/./bioregistry/data copying build/lib/bioregistry/data/mismatch.json -> build/bdist.linux-i686/wheel/./bioregistry/data copying build/lib/bioregistry/data/README.md -> build/bdist.linux-i686/wheel/./bioregistry/data copying build/lib/bioregistry/data/collections.json -> build/bdist.linux-i686/wheel/./bioregistry/data copying build/lib/bioregistry/upload_ndex.py -> build/bdist.linux-i686/wheel/./bioregistry creating build/bdist.linux-i686/wheel/bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/__main__.py -> build/bdist.linux-i686/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/uri_parsing.py -> build/bdist.linux-i686/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/curie_parsing.py -> build/bdist.linux-i686/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/curie_validation.py -> build/bdist.linux-i686/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/cli.py -> build/bdist.linux-i686/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/parse_version_iri.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/cli.py -> build/bdist.linux-i686/wheel/./bioregistry running install_egg_info Copying src/bioregistry.egg-info to build/bdist.linux-i686/wheel/./bioregistry-0.11.12.egg-info running install_scripts creating build/bdist.linux-i686/wheel/bioregistry-0.11.12.dist-info/WHEEL creating '/build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/.tmp-277rxz41/bioregistry-0.11.12-py3-none-any.whl' and adding 'build/bdist.linux-i686/wheel' to it adding 'bioregistry/__init__.py' adding 'bioregistry/__main__.py' adding 'bioregistry/bibliometrics.py' adding 'bioregistry/cli.py' adding 'bioregistry/collection_api.py' adding 'bioregistry/compare.py' adding 'bioregistry/constants.py' adding 'bioregistry/license_standardizer.py' adding 'bioregistry/lint.py' adding 'bioregistry/metaresource_api.py' adding 'bioregistry/pandas.py' adding 'bioregistry/parse_iri.py' adding 'bioregistry/parse_version_iri.py' adding 'bioregistry/py.typed' adding 'bioregistry/record_accumulator.py' adding 'bioregistry/resolve.py' adding 'bioregistry/resolve_identifier.py' adding 'bioregistry/resource_manager.py' adding 'bioregistry/schema_utils.py' adding 'bioregistry/summary.py' adding 'bioregistry/upload_ndex.py' adding 'bioregistry/uri_format.py' adding 'bioregistry/utils.py' adding 'bioregistry/version.py' adding 'bioregistry/analysis/__init__.py' adding 'bioregistry/analysis/bioregistry_diff.py' adding 'bioregistry/analysis/paper_ranking.py' adding 'bioregistry/analysis/paper_ranking_requirements.txt' adding 'bioregistry/app/__init__.py' adding 'bioregistry/app/api.py' adding 'bioregistry/app/cli.py' adding 'bioregistry/app/constants.py' adding 'bioregistry/app/impl.py' adding 'bioregistry/app/proxies.py' adding 'bioregistry/app/test.py' adding 'bioregistry/app/ui.py' adding 'bioregistry/app/utils.py' adding 'bioregistry/app/wsgi.py' adding 'bioregistry/app/static/logo.svg' adding 'bioregistry/app/templates/base.html' adding 'bioregistry/app/templates/collection.html' adding 'bioregistry/app/templates/collections.html' adding 'bioregistry/app/templates/context.html' adding 'bioregistry/app/templates/contexts.html' adding 'bioregistry/app/templates/contributor.html' adding 'bioregistry/app/templates/contributors.html' adding 'bioregistry/app/templates/home.html' adding 'bioregistry/app/templates/macros.html' adding 'bioregistry/app/templates/metaresource.html' adding 'bioregistry/app/templates/metaresources.html' adding 'bioregistry/app/templates/prose.html' adding 'bioregistry/app/templates/reference.html' adding 'bioregistry/app/templates/resource.html' adding 'bioregistry/app/templates/resources.html' adding 'bioregistry/app/templates/highlights/keywords.html' adding 'bioregistry/app/templates/highlights/owners.html' adding 'bioregistry/app/templates/highlights/relations.html' adding 'bioregistry/app/templates/highlights/twitter.html' adding 'bioregistry/app/templates/meta/access.html' adding 'bioregistry/app/templates/meta/acknowledgements.html' adding 'bioregistry/app/templates/meta/download.html' adding 'bioregistry/app/templates/meta/related.html' adding 'bioregistry/app/templates/meta/schema.html' adding 'bioregistry/app/templates/meta/summary.html' adding 'bioregistry/app/templates/meta/sustainability.html' adding 'bioregistry/app/templates/resolve_errors/disallowed_identifier.html' adding 'bioregistry/app/templates/resolve_errors/invalid_identifier.html' adding 'bioregistry/app/templates/resolve_errors/missing_prefix.html' adding 'bioregistry/app/templates/resolve_errors/missing_providers.html' adding 'bioregistry/benchmarks/__init__.py' adding 'bioregistry/benchmarks/__main__.py' adding 'bioregistry/benchmarks/cli.py' adding 'bioregistry/benchmarks/curie_parsing.py' adding 'bioregistry/benchmarks/curie_validation.py' adding 'bioregistry/benchmarks/uri_parsing.py' adding 'bioregistry/curation/__init__.py' adding 'bioregistry/curation/add_co_providers.py' adding 'bioregistry/curation/add_descriptions_from_gs.py' adding 'bioregistry/curation/add_examples.py' adding 'bioregistry/curation/add_examples_from_javert.py' adding 'bioregistry/curation/add_examples_from_ols.py' adding 'bioregistry/curation/add_ontology_regexes.py' adding 'bioregistry/curation/bulk_import.py' adding 'bioregistry/curation/clean_licenses.py' adding 'bioregistry/curation/clean_name_suffixes.py' adding 'bioregistry/curation/clean_publications.py' adding 'bioregistry/curation/cleanup_authors.py' adding 'bioregistry/curation/curated_papers.csv' adding 'bioregistry/curation/deprecation_diff.py' adding 'bioregistry/curation/enrich_publications.py' adding 'bioregistry/curation/fix_obo_purls.py' adding 'bioregistry/curation/import_pc_semiautomatic.py' adding 'bioregistry/curation/make_description_curation_sheet.py' adding 'bioregistry/curation/make_health_report_curation_sheet.py' adding 'bioregistry/curation/map_bartoc_via_wikidata.py' adding 'bioregistry/curation/map_re3data_via_fairsharing.py' adding 'bioregistry/curation/rename_metaprefix.py' adding 'bioregistry/curation/review_pc.py' adding 'bioregistry/curation/suggest_author_curation.py' adding 'bioregistry/curation/suggest_uniprot_providers.py' adding 'bioregistry/data/README.md' adding 'bioregistry/data/__init__.py' adding 'bioregistry/data/bioregistry.json' adding 'bioregistry/data/collections.json' adding 'bioregistry/data/contexts.json' adding 'bioregistry/data/metaregistry.json' adding 'bioregistry/data/mismatch.json' adding 'bioregistry/export/__init__.py' adding 'bioregistry/export/__main__.py' adding 'bioregistry/export/cli.py' adding 'bioregistry/export/prefix_maps.py' adding 'bioregistry/export/prefixcc.py' adding 'bioregistry/export/rdf_export.py' adding 'bioregistry/export/schema_export.py' adding 'bioregistry/export/sssom_export.py' adding 'bioregistry/export/tables_export.py' adding 'bioregistry/export/tsv_export.py' adding 'bioregistry/export/warnings_export.py' adding 'bioregistry/export/yaml_export.py' adding 'bioregistry/external/__init__.py' adding 'bioregistry/external/align.py' adding 'bioregistry/external/alignment_utils.py' adding 'bioregistry/external/aberowl/__init__.py' adding 'bioregistry/external/aberowl/processed.json' adding 'bioregistry/external/bartoc/__init__.py' adding 'bioregistry/external/bartoc/processed.json' adding 'bioregistry/external/biocontext/__init__.py' adding 'bioregistry/external/biocontext/processed.json' adding 'bioregistry/external/biolink/__init__.py' adding 'bioregistry/external/biolink/processed.json' adding 'bioregistry/external/biolink/processing_biolink.json' adding 'bioregistry/external/bioportal/__init__.py' adding 'bioregistry/external/bioportal/agroportal.json' adding 'bioregistry/external/bioportal/agroportal.py' adding 'bioregistry/external/bioportal/bioportal.json' adding 'bioregistry/external/bioportal/bioportal.py' adding 'bioregistry/external/bioportal/ecoportal.json' adding 'bioregistry/external/bioportal/ecoportal.py' adding 'bioregistry/external/cellosaurus/__init__.py' adding 'bioregistry/external/cellosaurus/processed.json' adding 'bioregistry/external/cheminf/__init__.py' adding 'bioregistry/external/cheminf/processed.json' adding 'bioregistry/external/cropoct/__init__.py' adding 'bioregistry/external/cropoct/processed.json' adding 'bioregistry/external/edam/__init__.py' adding 'bioregistry/external/edam/processed.json' adding 'bioregistry/external/fairsharing/__init__.py' adding 'bioregistry/external/fairsharing/processed.json' adding 'bioregistry/external/go/__init__.py' adding 'bioregistry/external/go/processed.json' adding 'bioregistry/external/go/processing_go.json' adding 'bioregistry/external/hl7/OID_Report.csv' adding 'bioregistry/external/hl7/__init__.py' adding 'bioregistry/external/integbio/__init__.py' adding 'bioregistry/external/integbio/processed.json' adding 'bioregistry/external/lov/__init__.py' adding 'bioregistry/external/lov/processed.json' adding 'bioregistry/external/miriam/__init__.py' adding 'bioregistry/external/miriam/processed.json' adding 'bioregistry/external/n2t/__init__.py' adding 'bioregistry/external/n2t/processed.json' adding 'bioregistry/external/ncbi/__init__.py' adding 'bioregistry/external/ncbi/processed.json' adding 'bioregistry/external/obofoundry/__init__.py' adding 'bioregistry/external/obofoundry/processed.json' adding 'bioregistry/external/ols/__init__.py' adding 'bioregistry/external/ols/processed.json' adding 'bioregistry/external/ols/processing_ols.json' adding 'bioregistry/external/ontobee/__init__.py' adding 'bioregistry/external/ontobee/processed.json' adding 'bioregistry/external/pathguide/__init__.py' adding 'bioregistry/external/prefixcommons/__init__.py' adding 'bioregistry/external/prefixcommons/processed.json' adding 'bioregistry/external/re3data/__init__.py' adding 'bioregistry/external/re3data/processed.json' adding 'bioregistry/external/rrid/__init__.py' adding 'bioregistry/external/togoid/__init__.py' adding 'bioregistry/external/togoid/processed.json' adding 'bioregistry/external/uniprot/__init__.py' adding 'bioregistry/external/uniprot/processed.json' adding 'bioregistry/external/wikidata/__init__.py' adding 'bioregistry/external/wikidata/processed.json' adding 'bioregistry/external/zazuko/__init__.py' adding 'bioregistry/external/zazuko/processed.json' adding 'bioregistry/gh/__init__.py' adding 'bioregistry/gh/github_client.py' adding 'bioregistry/gh/new_prefix.py' adding 'bioregistry/health/__init__.py' adding 'bioregistry/health/__main__.py' adding 'bioregistry/health/check_homepages.py' adding 'bioregistry/health/check_providers.py' adding 'bioregistry/health/cli.py' adding 'bioregistry/schema/__init__.py' adding 'bioregistry/schema/constants.py' adding 'bioregistry/schema/schema.json' adding 'bioregistry/schema/struct.py' adding 'bioregistry/schema/utils.py' adding 'bioregistry-0.11.12.dist-info/LICENSE' adding 'bioregistry-0.11.12.dist-info/METADATA' adding 'bioregistry-0.11.12.dist-info/WHEEL' adding 'bioregistry-0.11.12.dist-info/entry_points.txt' adding 'bioregistry-0.11.12.dist-info/top_level.txt' adding 'bioregistry-0.11.12.dist-info/RECORD' removing build/bdist.linux-i686/wheel Successfully built bioregistry-0.11.12-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build; python3.13 -m pytest -k 'not test_url and not test_url_banana and not test_obolibrary_example and not test_usages ' ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build configfile: pyproject.toml plugins: anyio-4.7.0, typeguard-4.4.2 collected 137 items / 6 deselected / 131 selected tests/test_api.py . [ 0%] tests/test_collections.py ... [ 3%] tests/test_contexts.py .... [ 6%] tests/test_data.py ...................s............................s... [ 45%] tests/test_data_slow.py ... [ 48%] tests/test_duplicates.py .. [ 49%] tests/test_identifiers_org.py .... [ 52%] tests/test_indra.py ss [ 54%] tests/test_manager.py ........... [ 62%] tests/test_metaregistry.py ..... [ 66%] tests/test_obofoundry.py . [ 67%] tests/test_ols.py . [ 67%] tests/test_pandas.py .s.... [ 72%] tests/test_resolve.py ....... [ 77%] tests/test_sparql.py s [ 78%] tests/test_utils.py .. [ 80%] tests/test_web/test_api.py ................ [ 92%] tests/test_web/test_ui.py .......... [100%] =============================== warnings summary =============================== bioregistry/schema_utils.py:61: 1778 warnings tests/test_contexts.py: 1778 warnings tests/test_manager.py: 19558 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/schema_utils.py:61: PydanticDeprecatedSince20: The `parse_obj` method is deprecated; use `model_validate` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ return {prefix: Resource.parse_obj(value) for prefix, value in data.items()} bioregistry/schema/struct.py:648: 7112 warnings tests/test_api.py: 7 warnings tests/test_collections.py: 58 warnings tests/test_contexts.py: 209240 warnings tests/test_data.py: 230996 warnings tests/test_data_slow.py: 334389 warnings tests/test_identifiers_org.py: 1497 warnings tests/test_manager.py: 422132 warnings tests/test_metaregistry.py: 245 warnings tests/test_resolve.py: 8418 warnings tests/test_web/test_api.py: 4180 warnings tests/test_web/test_ui.py: 13217 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/schema/struct.py:648: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ return self.dict().get(metaprefix) or dict() bioregistry/app/api.py:137 /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/app/api.py:137: DeprecationWarning: `example` has been deprecated, please use `examples` instead prefix: str = Path( bioregistry/app/api.py:185 /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/app/api.py:185: DeprecationWarning: `example` has been deprecated, please use `examples` instead METAPREFIX_PATH = Path( bioregistry/app/api.py:353 /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/app/api.py:353: DeprecationWarning: `example` has been deprecated, please use `examples` instead identifier: str = Path( bioregistry/app/api.py:405 /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/app/api.py:405: DeprecationWarning: `example` has been deprecated, please use `examples` instead identifier: str = Path(title="Context Key", description="The context key", example="obo"), ../../../../../../usr/lib/python3/dist-packages/starlette/middleware/wsgi.py:14 /usr/lib/python3/dist-packages/starlette/middleware/wsgi.py:14: DeprecationWarning: starlette.middleware.wsgi is deprecated and will be removed in a future release. Please refer to https://github.com/abersheeran/a2wsgi as a replacement. warnings.warn( tests/test_api.py: 7 warnings tests/test_collections.py: 18 warnings tests/test_contexts.py: 31539 warnings tests/test_data.py: 43942 warnings tests/test_data_slow.py: 47708 warnings tests/test_identifiers_org.py: 778 warnings tests/test_manager.py: 48395 warnings tests/test_metaregistry.py: 56 warnings tests/test_resolve.py: 3454 warnings tests/test_web/test_api.py: 2727 warnings tests/test_web/test_ui.py: 5177 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/schema/struct.py:673: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ rv = self.dict().get(key) tests/test_collections.py: 13 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/tests/test_collections.py:31: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ collection = collection_pydantic.dict() tests/test_data.py::TestRegistry::test_keys /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/tests/test_data.py:83: PydanticDeprecatedSince20: The `__fields__` attribute is deprecated, use `model_fields` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ keys = set(Resource.__fields__.keys()) tests/test_data.py: 1404 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/tests/test_data.py:875: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ for key, value in publication.dict().items(): tests/test_manager.py: 3021 warnings tests/test_web/test_api.py: 38 warnings tests/test_web/test_ui.py: 31 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/schema/struct.py:2853: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ records = [publication.dict(exclude_none=True) for publication in publications] tests/test_manager.py: 99 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/schema/struct.py:1296: PydanticDeprecatedSince20: The `parse_obj` method is deprecated; use `model_validate` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ publications.append(Publication.parse_obj(publication)) tests/test_metaregistry.py: 32 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/tests/test_metaregistry.py:84: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ invalid_keys = set(registry.dict()).difference(Registry.__fields__) tests/test_metaregistry.py: 32 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/tests/test_metaregistry.py:84: PydanticDeprecatedSince20: The `__fields__` attribute is deprecated, use `model_fields` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ invalid_keys = set(registry.dict()).difference(Registry.__fields__) tests/test_web/test_api.py::TestWeb::test_api_collection tests/test_web/test_api.py::TestWeb::test_api_metaresource tests/test_web/test_api.py::TestWeb::test_api_resource /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/app/api.py:57: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ content = content.dict( tests/test_web/test_api.py: 2390 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/schema/utils.py:30: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ return sanitize_dict(base_model.dict(**kwargs)) tests/test_web/test_api.py: 3556 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/tests/test_web/test_api.py:59: PydanticDeprecatedSince20: The `parse_obj` method is deprecated; use `model_validate` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ return {key: Resource.parse_obj(resource) for key, resource in data} tests/test_web/test_api.py: 1778 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/tests/test_web/test_api.py:93: PydanticDeprecatedSince20: The `parse_obj` method is deprecated; use `model_validate` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ return {key: Resource.parse_obj(resource) for key, resource in data} tests/test_web/test_api.py::TestWeb::test_external_registry_mappings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/tests/test_web/test_api.py:237: PydanticDeprecatedSince20: The `parse_obj` method is deprecated; use `model_validate` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ res_parsed = MappingResponse.parse_obj(res.json()) tests/test_web/test_api.py::TestWeb::test_iri_mapping /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/tests/test_web/test_api.py:255: PydanticDeprecatedSince20: The `parse_obj` method is deprecated; use `model_validate` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ data = URIResponse.parse_obj(res.json()) tests/test_web/test_api.py::TestWeb::test_ui_resource_rdf tests/test_web/test_ui.py::TestUI::test_ui_collection_rdf tests/test_web/test_ui.py::TestUI::test_ui_registry_rdf /usr/lib/python3/dist-packages/rdflib/plugins/parsers/notation3.py:2050: DeprecationWarning: ConjunctiveGraph is deprecated, use Dataset instead. conj_graph = ConjunctiveGraph(store=graph.store) tests/test_web/test_ui.py::TestUI::test_ui /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/app/ui.py:274: PydanticDeprecatedSince20: The `schema` method is deprecated; use `model_json_schema` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ schema=Context.schema(), tests/test_web/test_ui.py::TestUI::test_ui /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/app/ui.py:288: PydanticDeprecatedSince20: The `schema` method is deprecated; use `model_json_schema` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ schema=Context.schema()["properties"], tests/test_web/test_ui.py: 22 warnings /usr/lib/python3/dist-packages/jinja2/environment.py:490: PydanticDeprecatedSince20: The `__fields__` attribute is deprecated, use `model_fields` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ return getattr(obj, attribute) tests/test_web/test_ui.py::TestUI::test_ui_collection_json /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/app/utils.py:181: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ json.dumps(data.dict(exclude_unset=True, exclude_none=True), ensure_ascii=False), tests/test_web/test_ui.py::TestUI::test_ui_collection_json /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/app/utils.py:186: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ yaml.safe_dump(data.dict(exclude_unset=True, exclude_none=True), allow_unicode=True), -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html == 125 passed, 6 skipped, 6 deselected, 1450840 warnings in 311.52s (0:05:11) == create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-bioregistry/ -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir debian/rules execute_after_dh_auto_install make[1]: Entering directory '/build/reproducible-path/python-bioregistry-0.11.12' sed -i 's#https://raw.githubusercontent.com/biopragmatics/bioregistry/main/docs/img/#file://#' \ debian/python3-bioregistry/usr/lib/python3*/dist-packages/bioregistry/app/templates/meta/summary.html make[1]: Leaving directory '/build/reproducible-path/python-bioregistry-0.11.12' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-bioregistry' in '../python3-bioregistry_0.11.12-3_all.deb'. dpkg-genbuildinfo --build=binary -O../python-bioregistry_0.11.12-3_i386.buildinfo dpkg-genchanges --build=binary -O../python-bioregistry_0.11.12-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from python-bioregistry-0.11.12/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/43544 and its subdirectories I: Current time: Sun Apr 12 01:32:52 -12 2026 I: pbuilder-time-stamp: 1776000772 Mon Mar 10 07:09:58 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos2-i386.debian.net. Mon Mar 10 07:09:58 UTC 2025 I: Preparing to do remote build '2' on ionos2-i386.debian.net. Mon Mar 10 07:09:58 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos2-i386.debian.net is marked as down. Mon Mar 10 07:09:58 UTC 2025 - checking via ssh if ionos2-i386.debian.net is up. removed '/tmp/read-only-fs-test-AP6G8o' ==================================================================================== Mon Mar 10 07:09:59 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos2-i386, called using "2 python-bioregistry trixie /srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22 0.11.12-3" as arguments. Mon Mar 10 07:09:59 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-HRjKnp4G" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Mar 10 07:09:59 UTC 2025 I: Downloading source for trixie/python-bioregistry=0.11.12-3 Reading package lists... NOTICE: 'python-bioregistry' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/bioregistry.git Please use: git clone https://salsa.debian.org/med-team/bioregistry.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 6000 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main python-bioregistry 0.11.12-3 (dsc) [2627 B] Get:2 http://deb.debian.org/debian trixie/main python-bioregistry 0.11.12-3 (tar) [5989 kB] Get:3 http://deb.debian.org/debian trixie/main python-bioregistry 0.11.12-3 (diff) [7760 B] Fetched 6000 kB in 0s (26.3 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'python-bioregistry' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/bioregistry.git Please use: git clone https://salsa.debian.org/med-team/bioregistry.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 6000 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main python-bioregistry 0.11.12-3 (dsc) [2627 B] Get:2 http://deb.debian.org/debian trixie/main python-bioregistry 0.11.12-3 (tar) [5989 kB] Get:3 http://deb.debian.org/debian trixie/main python-bioregistry 0.11.12-3 (diff) [7760 B] Fetched 6000 kB in 0s (26.3 MB/s) Download complete and in download only mode ============================================================================= Re-Building python-bioregistry in trixie on i386 on ionos2-i386 now. Date: Mon Mar 10 08:10:03 CET 2025 Date UTC: Mon Mar 10 07:10:03 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22 + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22/pbuilderrc_0E5f + case ${ARCH} in + let NUM_CPU-=3 + case $ARCH in + locale=de_CH + language=de + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' python-bioregistry = debian-installer -o python-bioregistry = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' python-bioregistry = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22/pbuilderrc_0E5f --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22/b2 --logfile b2/build.log python-bioregistry_0.11.12-3.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Mon Mar 10 21:10:04 +14 2025 I: pbuilder-time-stamp: 1741590604 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [python-bioregistry_0.11.12-3.dsc] I: copying [./python-bioregistry_0.11.12.orig.tar.gz] I: copying [./python-bioregistry_0.11.12-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-bioregistry_0.11.12-3.dsc: unsupported subcommand dpkg-source: info: extracting python-bioregistry in python-bioregistry-0.11.12 dpkg-source: info: unpacking python-bioregistry_0.11.12.orig.tar.gz dpkg-source: info: unpacking python-bioregistry_0.11.12-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying privacy-breach.patch dpkg-source: info: applying vendor_more_click.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/32152/tmp/hooks/D01_modify_environment starting debug: Running on ionos2-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Mar 10 07:10 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/32152/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/32152/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=31f458503e164cc3b3a6126506c7b1f3 LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=32152 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22/pbuilderrc_0E5f --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22/b2 --logfile b2/build.log python-bioregistry_0.11.12-3.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/32152/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all, python3-bs4, python3-click, python3-curies, python3-defusedxml, python3-fastapi, python3-flask-bootstrap, python3-httpx, python3-markdown, python3-more-itertools, python3-pandas, python3-pydantic, python3-pystow, python3-pytest, python3-rdflib, python3-rdflib-endpoint, python3-setuptools, python3-tabulate, python3-tqdm, python3-yaml dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19787 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-bs4; however: Package python3-bs4 is not installed. pbuilder-satisfydepends-dummy depends on python3-click; however: Package python3-click is not installed. pbuilder-satisfydepends-dummy depends on python3-curies; however: Package python3-curies is not installed. pbuilder-satisfydepends-dummy depends on python3-defusedxml; however: Package python3-defusedxml is not installed. pbuilder-satisfydepends-dummy depends on python3-fastapi; however: Package python3-fastapi is not installed. pbuilder-satisfydepends-dummy depends on python3-flask-bootstrap; however: Package python3-flask-bootstrap is not installed. pbuilder-satisfydepends-dummy depends on python3-httpx; however: Package python3-httpx is not installed. pbuilder-satisfydepends-dummy depends on python3-markdown; however: Package python3-markdown is not installed. pbuilder-satisfydepends-dummy depends on python3-more-itertools; however: Package python3-more-itertools is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pydantic; however: Package python3-pydantic is not installed. pbuilder-satisfydepends-dummy depends on python3-pystow; however: Package python3-pystow is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-rdflib; however: Package python3-rdflib is not installed. pbuilder-satisfydepends-dummy depends on python3-rdflib-endpoint; however: Package python3-rdflib-endpoint is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-tabulate; however: Package python3-tabulate is not installed. pbuilder-satisfydepends-dummy depends on python3-tqdm; however: Package python3-tqdm is not installed. pbuilder-satisfydepends-dummy depends on python3-yaml; however: Package python3-yaml is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu72{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a} python3-annotated-types{a} python3-anyio{a} python3-autocommand{a} python3-blinker{a} python3-bs4{a} python3-build{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-curies{a} python3-dateutil{a} python3-defusedxml{a} python3-dnspython{a} python3-email-validator{a} python3-fastapi{a} python3-flask{a} python3-flask-bootstrap{a} python3-h11{a} python3-httpcore{a} python3-httpx{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-itsdangerous{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-markdown{a} python3-markdown-it{a} python3-markupsafe{a} python3-mdurl{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-pluggy{a} python3-pydantic{a} python3-pydantic-core{a} python3-pygments{a} python3-pyparsing{a} python3-pyproject-hooks{a} python3-pystow{a} python3-pytest{a} python3-pytz{a} python3-rdflib{a} python3-rdflib-endpoint{a} python3-requests{a} python3-rich{a} python3-setuptools{a} python3-sniffio{a} python3-sortedcontainers{a} python3-soupsieve{a} python3-starlette{a} python3-tabulate{a} python3-toml{a} python3-tqdm{a} python3-trie{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-urllib3{a} python3-uvicorn{a} python3-uvloop{a} python3-werkzeug{a} python3-wheel{a} python3-wsproto{a} python3-wtforms{a} python3-yaml{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-aiofiles python3-asgiref python3-babel python3-bottleneck python3-cryptography python3-dotenv python3-h2 python3-html5lib python3-html5rdf python3-lxml python3-matplotlib python3-networkx python3-numexpr python3-odf python3-openpyxl python3-openssl python3-orjson python3-pyinotify python3-python-multipart python3-scipy python3-tables wget 0 packages upgraded, 129 newly installed, 0 to remove and 0 not upgraded. Need to get 54.6 MB of archives. After unpacking 263 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 libpython3.13-minimal i386 3.13.2-1 [859 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.4-1 [107 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 python3.13-minimal i386 3.13.2-1 [2266 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.13.2-1 [27.1 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 media-types all 12.0.0 [28.9 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 tzdata all 2025a-2 [259 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 libffi8 i386 3.4.7-1 [21.4 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 libreadline8t64 i386 8.2-6 [173 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libpython3.13-stdlib i386 3.13.2-1 [1985 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 python3.13 i386 3.13.2-1 [745 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.13.2-1 [10.0 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 python3 i386 3.13.2-1 [28.1 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 python3-numpy-dev i386 1:2.2.3+ds-2+b1 [145 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libblas3 i386 3.12.1-2 [150 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 libgfortran5 i386 14.2.0-17 [735 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 liblapack3 i386 3.12.1-2 [2198 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 python3-numpy i386 1:2.2.3+ds-2+b1 [5060 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 openssl i386 3.4.1-1 [1432 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 ca-certificates all 20241223 [164 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.23.1-1 [245 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-7 [1199 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.4-5 [96.5 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-7 [301 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 automake all 1:1.17-3 [862 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 autopoint all 0.23.1-1 [770 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 libtool all 2.5.4-4 [539 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 43 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 libunistring5 i386 1.3-1 [458 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-6 [9582 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b2 [734 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 gettext i386 0.23.1-1 [1714 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 debhelper all 13.24.1 [920 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 python3-inflect all 7.3.1-2 [32.4 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 58 http://deb.debian.org/debian trixie/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 python3-pkg-resources all 75.8.0-1 [222 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 python3-zipp all 3.21.0-1 [10.6 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 python3-setuptools all 75.8.0-1 [724 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 dh-python all 6.20250108 [113 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 libuv1t64 i386 1.50.0-2 [163 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 libyaml-0-2 i386 0.2.5-2 [55.8 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 python3-packaging all 24.2-1 [55.3 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 python3-toml all 0.10.2-1 [16.2 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 python3-wheel all 0.45.1-1 [56.7 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 python3-build all 1.2.2-1 [36.0 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 pybuild-plugin-pyproject all 6.20250108 [11.6 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 python3-all i386 3.13.2-1 [1048 B] Get: 74 http://deb.debian.org/debian trixie/main i386 python3-annotated-types all 0.7.0-1 [18.8 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 python3-idna all 3.10-1 [42.0 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 python3-sniffio all 1.3.1-1 [7120 B] Get: 77 http://deb.debian.org/debian trixie/main i386 python3-anyio all 4.7.0-1 [61.8 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 python3-blinker all 1.9.0-1 [12.6 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 python3-soupsieve all 2.6-1 [38.3 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 python3-bs4 all 4.13.3-1 [166 kB] Get: 81 http://deb.debian.org/debian trixie/main i386 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 82 http://deb.debian.org/debian trixie/main i386 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 python3-charset-normalizer i386 3.4.1-1+b1 [127 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 python3-click all 8.2.0+0.really.8.1.8-1 [95.4 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 python3-pydantic-core i386 2.27.2-1+b2 [1454 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 python3-dnspython all 2.7.0-1 [164 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 python3-email-validator all 2.2.0-1 [31.6 kB] Get: 88 http://deb.debian.org/debian trixie/main i386 python3-pydantic i386 2.10.6-1 [346 kB] Get: 89 http://deb.debian.org/debian trixie/main i386 python3-sortedcontainers all 2.4.0-2 [31.9 kB] Get: 90 http://deb.debian.org/debian trixie/main i386 python3-trie all 0.4.0+ds-1 [7640 B] Get: 91 http://deb.debian.org/debian trixie/main i386 python3-curies all 0.9.0-1 [38.3 kB] Get: 92 http://deb.debian.org/debian trixie/main i386 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 93 http://deb.debian.org/debian trixie/main i386 python3-defusedxml all 0.7.1-3 [43.4 kB] Get: 94 http://deb.debian.org/debian trixie/main i386 python3-starlette all 0.41.3-2 [51.2 kB] Get: 95 http://deb.debian.org/debian trixie/main i386 python3-h11 all 0.14.0-1 [50.1 kB] Get: 96 http://deb.debian.org/debian trixie/main i386 python3-wsproto all 1.2.0-1 [25.4 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 python3-uvloop i386 0.21.0+ds1-2+b1 [564 kB] Get: 98 http://deb.debian.org/debian trixie/main i386 python3-uvicorn all 0.32.0-2 [50.8 kB] Get: 99 http://deb.debian.org/debian trixie/main i386 python3-fastapi all 0.115.11-3 [73.4 kB] Get: 100 http://deb.debian.org/debian trixie/main i386 python3-itsdangerous all 2.2.0-2 [18.1 kB] Get: 101 http://deb.debian.org/debian trixie/main i386 python3-markupsafe i386 2.1.5-1+b3 [14.0 kB] Get: 102 http://deb.debian.org/debian trixie/main i386 python3-jinja2 all 3.1.5-2 [107 kB] Get: 103 http://deb.debian.org/debian trixie/main i386 python3-werkzeug all 3.1.3-2 [207 kB] Get: 104 http://deb.debian.org/debian trixie/main i386 python3-flask all 3.1.0-2 [106 kB] Get: 105 http://deb.debian.org/debian trixie/main i386 python3-wtforms all 3.2.1-1 [68.8 kB] Get: 106 http://deb.debian.org/debian trixie/main i386 python3-flask-bootstrap all 2.4.1+ds-1 [1092 kB] Get: 107 http://deb.debian.org/debian trixie/main i386 python3-httpcore all 1.0.7-1 [44.7 kB] Get: 108 http://deb.debian.org/debian trixie/main i386 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 109 http://deb.debian.org/debian trixie/main i386 python3-mdurl all 0.1.2-1 [9444 B] Get: 110 http://deb.debian.org/debian trixie/main i386 python3-markdown-it all 3.0.0-2 [62.5 kB] Get: 111 http://deb.debian.org/debian trixie/main i386 python3-rich all 13.9.4-1 [203 kB] Get: 112 http://deb.debian.org/debian trixie/main i386 python3-httpx all 0.27.2-1 [77.6 kB] Get: 113 http://deb.debian.org/debian trixie/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Get: 114 http://deb.debian.org/debian trixie/main i386 python3-markdown all 3.7-2 [85.2 kB] Get: 115 http://deb.debian.org/debian trixie/main i386 python3-pytz all 2025.1-3 [150 kB] Get: 116 http://deb.debian.org/debian trixie/main i386 python3-tz all 2025.1-3 [4004 B] Get: 117 http://deb.debian.org/debian trixie/main i386 python3-pandas-lib i386 2.2.3+dfsg-8+b1 [4307 kB] Get: 118 http://deb.debian.org/debian trixie/main i386 python3-pandas all 2.2.3+dfsg-8 [3097 kB] Get: 119 http://deb.debian.org/debian trixie/main i386 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 120 http://deb.debian.org/debian trixie/main i386 python3-pyparsing all 3.1.2-1 [146 kB] Get: 121 http://deb.debian.org/debian trixie/main i386 python3-urllib3 all 2.3.0-1 [114 kB] Get: 122 http://deb.debian.org/debian trixie/main i386 python3-requests all 2.32.3+dfsg-4 [72.1 kB] Get: 123 http://deb.debian.org/debian trixie/main i386 python3-tqdm all 4.67.1-2 [91.1 kB] Get: 124 http://deb.debian.org/debian trixie/main i386 python3-pystow all 0.5.5-1 [25.6 kB] Get: 125 http://deb.debian.org/debian trixie/main i386 python3-pytest all 8.3.4-1 [250 kB] Get: 126 http://deb.debian.org/debian trixie/main i386 python3-rdflib all 7.1.1-2 [472 kB] Get: 127 http://deb.debian.org/debian trixie/main i386 python3-rdflib-endpoint all 0.5.1-2 [14.2 kB] Get: 128 http://deb.debian.org/debian trixie/main i386 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 129 http://deb.debian.org/debian trixie/main i386 python3-yaml i386 6.0.2-1+b2 [135 kB] Fetched 54.6 MB in 1s (69.9 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19787 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-1_i386.deb ... Unpacking libpython3.13-minimal:i386 (3.13.2-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.6.4-1_i386.deb ... Unpacking libexpat1:i386 (2.6.4-1) ... 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Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:i386. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_i386.deb ... Unpacking libpython3.13-stdlib:i386 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_i386.deb ... Unpacking python3.13 (3.13.2-1) ... Selecting previously unselected package libpython3-stdlib:i386. 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Setting up libelf1t64:i386 (0.192-4) ... Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Mar 10 07:10:49 UTC 2025. Universal Time is now: Mon Mar 10 07:10:49 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libblas3:i386 (3.12.1-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libunistring5:i386 (1.3-1) ... Setting up python3-numpy-dev:i386 (1:2.2.3+ds-2+b1) ... Setting up autopoint (0.23.1-1) ... Setting up libgfortran5:i386 (14.2.0-17) ... Setting up autoconf (2.72-3) ... Setting up libffi8:i386 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b2) ... Setting up netbase (6.4) ... Setting up openssl (3.4.1-1) ... Setting up readline-common (8.2-6) ... 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Setting up python3-httpx (0.27.2-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pydantic (2.10.6-1) ... Setting up python3-requests (2.32.3+dfsg-4) ... Setting up python3-pystow (0.5.5-1) ... Setting up python3-curies (0.9.0-1) ... Setting up python3-pkg-resources (75.8.0-1) ... Setting up python3-uvicorn (0.32.0-2) ... Setting up python3-setuptools (75.8.0-1) ... Setting up python3-flask (3.1.0-2) ... Setting up python3-flask-bootstrap (2.4.1+ds-1) ... Setting up python3-fastapi (0.115.11-3) ... Setting up python3-rdflib-endpoint (0.5.1-2) ... Setting up dh-python (6.20250108) ... Setting up pybuild-plugin-pyproject (6.20250108) ... Processing triggers for libc-bin (2.40-7) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/32152/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/32152/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/python-bioregistry-0.11.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-bioregistry_0.11.12-3_source.changes dpkg-buildpackage: info: source package python-bioregistry dpkg-buildpackage: info: source version 0.11.12-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 dpkg-source: info: using options from python-bioregistry-0.11.12/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13 * Building wheel... running bdist_wheel running build running build_py creating build/lib/bioregistry copying src/bioregistry/metaresource_api.py -> build/lib/bioregistry copying src/bioregistry/summary.py -> build/lib/bioregistry copying src/bioregistry/collection_api.py -> build/lib/bioregistry copying src/bioregistry/record_accumulator.py -> build/lib/bioregistry copying src/bioregistry/license_standardizer.py -> build/lib/bioregistry copying src/bioregistry/pandas.py -> build/lib/bioregistry copying src/bioregistry/parse_version_iri.py -> build/lib/bioregistry copying src/bioregistry/version.py -> build/lib/bioregistry copying src/bioregistry/upload_ndex.py -> build/lib/bioregistry copying src/bioregistry/__main__.py -> build/lib/bioregistry copying src/bioregistry/parse_iri.py -> build/lib/bioregistry copying src/bioregistry/resolve.py -> build/lib/bioregistry copying src/bioregistry/schema_utils.py -> build/lib/bioregistry copying src/bioregistry/lint.py -> build/lib/bioregistry copying src/bioregistry/__init__.py -> build/lib/bioregistry copying src/bioregistry/compare.py -> build/lib/bioregistry copying src/bioregistry/resource_manager.py -> build/lib/bioregistry copying src/bioregistry/utils.py -> build/lib/bioregistry copying src/bioregistry/bibliometrics.py -> build/lib/bioregistry copying src/bioregistry/cli.py -> build/lib/bioregistry copying src/bioregistry/constants.py -> build/lib/bioregistry copying src/bioregistry/resolve_identifier.py -> build/lib/bioregistry copying src/bioregistry/uri_format.py -> build/lib/bioregistry creating build/lib/bioregistry/health copying src/bioregistry/health/check_homepages.py -> build/lib/bioregistry/health copying src/bioregistry/health/__main__.py -> build/lib/bioregistry/health copying src/bioregistry/health/__init__.py -> build/lib/bioregistry/health copying src/bioregistry/health/check_providers.py -> build/lib/bioregistry/health copying src/bioregistry/health/cli.py -> build/lib/bioregistry/health creating build/lib/bioregistry/data copying src/bioregistry/data/__init__.py -> build/lib/bioregistry/data creating build/lib/bioregistry/external copying src/bioregistry/external/align.py -> build/lib/bioregistry/external copying src/bioregistry/external/alignment_utils.py -> build/lib/bioregistry/external copying src/bioregistry/external/__init__.py -> build/lib/bioregistry/external creating build/lib/bioregistry/curation copying src/bioregistry/curation/fix_obo_purls.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/rename_metaprefix.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/make_health_report_curation_sheet.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_examples.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_co_providers.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_descriptions_from_gs.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/make_description_curation_sheet.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/map_bartoc_via_wikidata.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/import_pc_semiautomatic.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/deprecation_diff.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_examples_from_javert.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/review_pc.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/cleanup_authors.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_ontology_regexes.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/clean_licenses.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/map_re3data_via_fairsharing.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/bulk_import.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/clean_publications.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_examples_from_ols.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/__init__.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/clean_name_suffixes.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/suggest_uniprot_providers.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/suggest_author_curation.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/enrich_publications.py -> build/lib/bioregistry/curation creating build/lib/bioregistry/schema copying src/bioregistry/schema/struct.py -> build/lib/bioregistry/schema copying src/bioregistry/schema/__init__.py -> build/lib/bioregistry/schema copying src/bioregistry/schema/utils.py -> build/lib/bioregistry/schema copying src/bioregistry/schema/constants.py -> build/lib/bioregistry/schema creating build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/curie_parsing.py -> build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/curie_validation.py -> build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/__main__.py -> build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/uri_parsing.py -> build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/__init__.py -> build/lib/bioregistry/benchmarks copying src/bioregistry/benchmarks/cli.py -> build/lib/bioregistry/benchmarks creating build/lib/bioregistry/gh copying src/bioregistry/gh/new_prefix.py -> build/lib/bioregistry/gh copying src/bioregistry/gh/github_client.py -> build/lib/bioregistry/gh copying src/bioregistry/gh/__init__.py -> build/lib/bioregistry/gh creating build/lib/bioregistry/app copying src/bioregistry/app/ui.py -> build/lib/bioregistry/app copying src/bioregistry/app/api.py -> build/lib/bioregistry/app copying src/bioregistry/app/proxies.py -> build/lib/bioregistry/app copying src/bioregistry/app/wsgi.py -> build/lib/bioregistry/app copying src/bioregistry/app/test.py -> build/lib/bioregistry/app copying src/bioregistry/app/impl.py -> build/lib/bioregistry/app copying src/bioregistry/app/__init__.py -> build/lib/bioregistry/app copying src/bioregistry/app/utils.py -> build/lib/bioregistry/app copying src/bioregistry/app/cli.py -> build/lib/bioregistry/app copying src/bioregistry/app/constants.py -> build/lib/bioregistry/app creating build/lib/bioregistry/analysis copying src/bioregistry/analysis/paper_ranking.py -> build/lib/bioregistry/analysis copying src/bioregistry/analysis/__init__.py -> build/lib/bioregistry/analysis copying src/bioregistry/analysis/bioregistry_diff.py -> build/lib/bioregistry/analysis creating build/lib/bioregistry/export copying src/bioregistry/export/prefixcc.py -> build/lib/bioregistry/export copying src/bioregistry/export/rdf_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/tables_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/prefix_maps.py -> build/lib/bioregistry/export copying src/bioregistry/export/tsv_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/yaml_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/__main__.py -> build/lib/bioregistry/export copying src/bioregistry/export/warnings_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/__init__.py -> build/lib/bioregistry/export copying src/bioregistry/export/cli.py -> build/lib/bioregistry/export copying src/bioregistry/export/schema_export.py -> build/lib/bioregistry/export copying src/bioregistry/export/sssom_export.py -> build/lib/bioregistry/export creating build/lib/bioregistry/external/edam copying src/bioregistry/external/edam/__init__.py -> build/lib/bioregistry/external/edam creating build/lib/bioregistry/external/hl7 copying src/bioregistry/external/hl7/__init__.py -> build/lib/bioregistry/external/hl7 creating build/lib/bioregistry/external/prefixcommons copying src/bioregistry/external/prefixcommons/__init__.py -> build/lib/bioregistry/external/prefixcommons creating build/lib/bioregistry/external/ontobee copying src/bioregistry/external/ontobee/__init__.py -> build/lib/bioregistry/external/ontobee creating build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/agroportal.py -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/bioportal.py -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/__init__.py -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/ecoportal.py -> build/lib/bioregistry/external/bioportal creating build/lib/bioregistry/external/pathguide copying src/bioregistry/external/pathguide/__init__.py -> build/lib/bioregistry/external/pathguide creating build/lib/bioregistry/external/rrid copying src/bioregistry/external/rrid/__init__.py -> build/lib/bioregistry/external/rrid creating build/lib/bioregistry/external/re3data copying src/bioregistry/external/re3data/__init__.py -> build/lib/bioregistry/external/re3data creating build/lib/bioregistry/external/cropoct copying src/bioregistry/external/cropoct/__init__.py -> build/lib/bioregistry/external/cropoct creating build/lib/bioregistry/external/togoid copying src/bioregistry/external/togoid/__init__.py -> build/lib/bioregistry/external/togoid creating build/lib/bioregistry/external/uniprot copying src/bioregistry/external/uniprot/__init__.py -> build/lib/bioregistry/external/uniprot creating build/lib/bioregistry/external/cheminf copying src/bioregistry/external/cheminf/__init__.py -> build/lib/bioregistry/external/cheminf creating build/lib/bioregistry/external/integbio copying src/bioregistry/external/integbio/__init__.py -> build/lib/bioregistry/external/integbio creating build/lib/bioregistry/external/obofoundry copying src/bioregistry/external/obofoundry/__init__.py -> build/lib/bioregistry/external/obofoundry creating build/lib/bioregistry/external/bartoc copying src/bioregistry/external/bartoc/__init__.py -> build/lib/bioregistry/external/bartoc creating build/lib/bioregistry/external/biolink copying src/bioregistry/external/biolink/__init__.py -> build/lib/bioregistry/external/biolink creating build/lib/bioregistry/external/ncbi copying src/bioregistry/external/ncbi/__init__.py -> build/lib/bioregistry/external/ncbi creating build/lib/bioregistry/external/lov copying src/bioregistry/external/lov/__init__.py -> build/lib/bioregistry/external/lov creating build/lib/bioregistry/external/wikidata copying src/bioregistry/external/wikidata/__init__.py -> build/lib/bioregistry/external/wikidata creating build/lib/bioregistry/external/go copying src/bioregistry/external/go/__init__.py -> build/lib/bioregistry/external/go creating build/lib/bioregistry/external/biocontext copying src/bioregistry/external/biocontext/__init__.py -> build/lib/bioregistry/external/biocontext creating build/lib/bioregistry/external/aberowl copying src/bioregistry/external/aberowl/__init__.py -> build/lib/bioregistry/external/aberowl creating build/lib/bioregistry/external/n2t copying src/bioregistry/external/n2t/__init__.py -> build/lib/bioregistry/external/n2t creating build/lib/bioregistry/external/zazuko copying src/bioregistry/external/zazuko/__init__.py -> build/lib/bioregistry/external/zazuko creating build/lib/bioregistry/external/fairsharing copying src/bioregistry/external/fairsharing/__init__.py -> build/lib/bioregistry/external/fairsharing creating build/lib/bioregistry/external/miriam copying src/bioregistry/external/miriam/__init__.py -> build/lib/bioregistry/external/miriam creating build/lib/bioregistry/external/ols copying src/bioregistry/external/ols/__init__.py -> build/lib/bioregistry/external/ols creating build/lib/bioregistry/external/cellosaurus copying src/bioregistry/external/cellosaurus/__init__.py -> build/lib/bioregistry/external/cellosaurus running egg_info creating src/bioregistry.egg-info writing src/bioregistry.egg-info/PKG-INFO writing dependency_links to src/bioregistry.egg-info/dependency_links.txt writing entry points to src/bioregistry.egg-info/entry_points.txt writing requirements to src/bioregistry.egg-info/requires.txt writing top-level names to src/bioregistry.egg-info/top_level.txt writing manifest file 'src/bioregistry.egg-info/SOURCES.txt' reading manifest file 'src/bioregistry.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'Makefile' under directory 'docs' warning: no previously-included files matching '*.png' found under directory 'docs/img' warning: no previously-included files matching '*.py[cod]' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.dylib' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.gpickle' found anywhere in distribution no previously-included directories found matching 'docs/build' no previously-included directories found matching 'docs/_data' no previously-included directories found matching 'docs/source/api' no previously-included directories found matching 'exports' no previously-included directories found matching 'notebooks' no previously-included directories found matching 'tests/.pytest_cache' warning: no previously-included files found matching 'docs/*.md' warning: no previously-included files found matching 'docs/guides/*.md' warning: no previously-included files found matching 'docs/_config.yml' warning: no previously-included files found matching '.appveyor.yml' warning: no previously-included files found matching '.bumpversion.cfg' warning: no previously-included files found matching '.coveragerc' warning: no previously-included files found matching '.flake8' warning: no previously-included files found matching '.travis.yml' warning: no previously-included files found matching '.readthedocs.yml' warning: no previously-included files found matching 'tox.ini' warning: no previously-included files found matching '.pre-commit-config.yaml' warning: no previously-included files found matching 'Dockerfile' warning: no previously-included files found matching 'CITATION.cff' warning: no files found matching '*.rst' adding license file 'LICENSE' writing manifest file 'src/bioregistry.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bioregistry.app.static' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'bioregistry.app.static' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'bioregistry.app.static' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'bioregistry.app.static' to be distributed and are already explicitly excluding 'bioregistry.app.static' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bioregistry.app.templates' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'bioregistry.app.templates' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'bioregistry.app.templates' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'bioregistry.app.templates' to be distributed and are already explicitly excluding 'bioregistry.app.templates' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bioregistry.app.templates.highlights' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'bioregistry.app.templates.highlights' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'bioregistry.app.templates.highlights' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'bioregistry.app.templates.highlights' to be distributed and are already explicitly excluding 'bioregistry.app.templates.highlights' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bioregistry.app.templates.meta' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'bioregistry.app.templates.meta' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'bioregistry.app.templates.meta' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'bioregistry.app.templates.meta' to be distributed and are already explicitly excluding 'bioregistry.app.templates.meta' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bioregistry.app.templates.resolve_errors' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'bioregistry.app.templates.resolve_errors' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'bioregistry.app.templates.resolve_errors' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'bioregistry.app.templates.resolve_errors' to be distributed and are already explicitly excluding 'bioregistry.app.templates.resolve_errors' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying src/bioregistry/py.typed -> build/lib/bioregistry copying src/bioregistry/data/README.md -> build/lib/bioregistry/data copying src/bioregistry/data/bioregistry.json -> build/lib/bioregistry/data copying src/bioregistry/data/collections.json -> build/lib/bioregistry/data copying src/bioregistry/data/contexts.json -> build/lib/bioregistry/data copying src/bioregistry/data/metaregistry.json -> build/lib/bioregistry/data copying src/bioregistry/data/mismatch.json -> build/lib/bioregistry/data copying src/bioregistry/curation/curated_papers.csv -> build/lib/bioregistry/curation copying src/bioregistry/schema/schema.json -> build/lib/bioregistry/schema creating build/lib/bioregistry/app/static copying src/bioregistry/app/static/logo.svg -> build/lib/bioregistry/app/static creating build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/base.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/collection.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/collections.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/context.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/contexts.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/contributor.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/contributors.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/home.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/macros.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/metaresource.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/metaresources.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/prose.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/reference.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/resource.html -> build/lib/bioregistry/app/templates copying src/bioregistry/app/templates/resources.html -> build/lib/bioregistry/app/templates creating build/lib/bioregistry/app/templates/highlights copying src/bioregistry/app/templates/highlights/keywords.html -> build/lib/bioregistry/app/templates/highlights copying src/bioregistry/app/templates/highlights/owners.html -> build/lib/bioregistry/app/templates/highlights copying src/bioregistry/app/templates/highlights/relations.html -> build/lib/bioregistry/app/templates/highlights copying src/bioregistry/app/templates/highlights/twitter.html -> build/lib/bioregistry/app/templates/highlights creating build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/access.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/acknowledgements.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/download.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/related.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/schema.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/summary.html -> build/lib/bioregistry/app/templates/meta copying src/bioregistry/app/templates/meta/sustainability.html -> build/lib/bioregistry/app/templates/meta creating build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/app/templates/resolve_errors/disallowed_identifier.html -> build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/app/templates/resolve_errors/invalid_identifier.html -> build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/app/templates/resolve_errors/missing_prefix.html -> build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/app/templates/resolve_errors/missing_providers.html -> build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/analysis/paper_ranking_requirements.txt -> build/lib/bioregistry/analysis copying src/bioregistry/external/edam/processed.json -> build/lib/bioregistry/external/edam copying src/bioregistry/external/hl7/OID_Report.csv -> build/lib/bioregistry/external/hl7 copying src/bioregistry/external/prefixcommons/processed.json -> build/lib/bioregistry/external/prefixcommons copying src/bioregistry/external/ontobee/processed.json -> build/lib/bioregistry/external/ontobee copying src/bioregistry/external/bioportal/agroportal.json -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/bioportal.json -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/bioportal/ecoportal.json -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/re3data/processed.json -> build/lib/bioregistry/external/re3data copying src/bioregistry/external/cropoct/processed.json -> build/lib/bioregistry/external/cropoct copying src/bioregistry/external/togoid/processed.json -> build/lib/bioregistry/external/togoid copying src/bioregistry/external/uniprot/processed.json -> build/lib/bioregistry/external/uniprot copying src/bioregistry/external/cheminf/processed.json -> build/lib/bioregistry/external/cheminf copying src/bioregistry/external/integbio/processed.json -> build/lib/bioregistry/external/integbio copying src/bioregistry/external/obofoundry/processed.json -> build/lib/bioregistry/external/obofoundry copying src/bioregistry/external/bartoc/processed.json -> build/lib/bioregistry/external/bartoc copying src/bioregistry/external/biolink/processed.json -> build/lib/bioregistry/external/biolink copying src/bioregistry/external/biolink/processing_biolink.json -> build/lib/bioregistry/external/biolink copying src/bioregistry/external/ncbi/processed.json -> build/lib/bioregistry/external/ncbi copying src/bioregistry/external/lov/processed.json -> build/lib/bioregistry/external/lov copying src/bioregistry/external/wikidata/processed.json -> build/lib/bioregistry/external/wikidata copying src/bioregistry/external/go/processed.json -> build/lib/bioregistry/external/go copying src/bioregistry/external/go/processing_go.json -> build/lib/bioregistry/external/go copying src/bioregistry/external/biocontext/processed.json -> build/lib/bioregistry/external/biocontext copying src/bioregistry/external/aberowl/processed.json -> build/lib/bioregistry/external/aberowl copying src/bioregistry/external/n2t/processed.json -> build/lib/bioregistry/external/n2t copying src/bioregistry/external/zazuko/processed.json -> build/lib/bioregistry/external/zazuko copying src/bioregistry/external/fairsharing/processed.json -> build/lib/bioregistry/external/fairsharing copying src/bioregistry/external/miriam/processed.json -> build/lib/bioregistry/external/miriam copying src/bioregistry/external/ols/processed.json -> build/lib/bioregistry/external/ols copying src/bioregistry/external/ols/processing_ols.json -> build/lib/bioregistry/external/ols copying src/bioregistry/external/cellosaurus/processed.json -> build/lib/bioregistry/external/cellosaurus installing to build/bdist.linux-i686/wheel running install running install_lib creating build/bdist.linux-i686/wheel creating build/bdist.linux-i686/wheel/bioregistry creating build/bdist.linux-i686/wheel/bioregistry/health copying build/lib/bioregistry/health/check_homepages.py -> build/bdist.linux-i686/wheel/./bioregistry/health copying build/lib/bioregistry/health/__main__.py -> build/bdist.linux-i686/wheel/./bioregistry/health copying build/lib/bioregistry/health/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/health copying build/lib/bioregistry/health/check_providers.py -> build/bdist.linux-i686/wheel/./bioregistry/health copying build/lib/bioregistry/health/cli.py -> build/bdist.linux-i686/wheel/./bioregistry/health copying build/lib/bioregistry/py.typed -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/metaresource_api.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/summary.py -> build/bdist.linux-i686/wheel/./bioregistry creating build/bdist.linux-i686/wheel/bioregistry/data copying build/lib/bioregistry/data/README.md -> build/bdist.linux-i686/wheel/./bioregistry/data copying build/lib/bioregistry/data/metaregistry.json -> build/bdist.linux-i686/wheel/./bioregistry/data copying build/lib/bioregistry/data/mismatch.json -> build/bdist.linux-i686/wheel/./bioregistry/data copying build/lib/bioregistry/data/collections.json -> build/bdist.linux-i686/wheel/./bioregistry/data copying build/lib/bioregistry/data/bioregistry.json -> build/bdist.linux-i686/wheel/./bioregistry/data copying build/lib/bioregistry/data/contexts.json -> build/bdist.linux-i686/wheel/./bioregistry/data copying build/lib/bioregistry/data/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/data copying build/lib/bioregistry/collection_api.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/record_accumulator.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/license_standardizer.py -> build/bdist.linux-i686/wheel/./bioregistry creating build/bdist.linux-i686/wheel/bioregistry/external creating build/bdist.linux-i686/wheel/bioregistry/external/edam copying build/lib/bioregistry/external/edam/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/edam copying build/lib/bioregistry/external/edam/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/edam creating build/bdist.linux-i686/wheel/bioregistry/external/hl7 copying build/lib/bioregistry/external/hl7/OID_Report.csv -> build/bdist.linux-i686/wheel/./bioregistry/external/hl7 copying build/lib/bioregistry/external/hl7/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/hl7 creating build/bdist.linux-i686/wheel/bioregistry/external/prefixcommons copying build/lib/bioregistry/external/prefixcommons/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/prefixcommons copying build/lib/bioregistry/external/prefixcommons/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/prefixcommons copying build/lib/bioregistry/external/align.py -> build/bdist.linux-i686/wheel/./bioregistry/external creating build/bdist.linux-i686/wheel/bioregistry/external/ontobee copying build/lib/bioregistry/external/ontobee/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/ontobee copying build/lib/bioregistry/external/ontobee/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/ontobee creating build/bdist.linux-i686/wheel/bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/agroportal.py -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/bioportal.py -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/ecoportal.json -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/agroportal.json -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/bioportal.json -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal copying build/lib/bioregistry/external/bioportal/ecoportal.py -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal creating build/bdist.linux-i686/wheel/bioregistry/external/pathguide copying build/lib/bioregistry/external/pathguide/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/pathguide creating build/bdist.linux-i686/wheel/bioregistry/external/rrid copying build/lib/bioregistry/external/rrid/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/rrid creating build/bdist.linux-i686/wheel/bioregistry/external/re3data copying build/lib/bioregistry/external/re3data/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/re3data copying build/lib/bioregistry/external/re3data/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/re3data creating build/bdist.linux-i686/wheel/bioregistry/external/cropoct copying build/lib/bioregistry/external/cropoct/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/cropoct copying build/lib/bioregistry/external/cropoct/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/cropoct creating build/bdist.linux-i686/wheel/bioregistry/external/togoid copying build/lib/bioregistry/external/togoid/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/togoid copying build/lib/bioregistry/external/togoid/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/togoid creating build/bdist.linux-i686/wheel/bioregistry/external/uniprot copying build/lib/bioregistry/external/uniprot/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/uniprot copying build/lib/bioregistry/external/uniprot/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/uniprot creating build/bdist.linux-i686/wheel/bioregistry/external/cheminf copying build/lib/bioregistry/external/cheminf/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/cheminf copying build/lib/bioregistry/external/cheminf/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/cheminf creating build/bdist.linux-i686/wheel/bioregistry/external/integbio copying build/lib/bioregistry/external/integbio/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/integbio copying build/lib/bioregistry/external/integbio/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/integbio copying build/lib/bioregistry/external/alignment_utils.py -> build/bdist.linux-i686/wheel/./bioregistry/external creating build/bdist.linux-i686/wheel/bioregistry/external/obofoundry copying build/lib/bioregistry/external/obofoundry/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/obofoundry copying build/lib/bioregistry/external/obofoundry/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/obofoundry creating build/bdist.linux-i686/wheel/bioregistry/external/bartoc copying build/lib/bioregistry/external/bartoc/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/bartoc copying build/lib/bioregistry/external/bartoc/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/bartoc creating build/bdist.linux-i686/wheel/bioregistry/external/biolink copying build/lib/bioregistry/external/biolink/processing_biolink.json -> build/bdist.linux-i686/wheel/./bioregistry/external/biolink copying build/lib/bioregistry/external/biolink/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/biolink copying build/lib/bioregistry/external/biolink/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/biolink creating build/bdist.linux-i686/wheel/bioregistry/external/ncbi copying build/lib/bioregistry/external/ncbi/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/ncbi copying build/lib/bioregistry/external/ncbi/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/ncbi creating build/bdist.linux-i686/wheel/bioregistry/external/lov copying build/lib/bioregistry/external/lov/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/lov copying build/lib/bioregistry/external/lov/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/lov creating build/bdist.linux-i686/wheel/bioregistry/external/wikidata copying build/lib/bioregistry/external/wikidata/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/wikidata copying build/lib/bioregistry/external/wikidata/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/wikidata creating build/bdist.linux-i686/wheel/bioregistry/external/go copying build/lib/bioregistry/external/go/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/go copying build/lib/bioregistry/external/go/processing_go.json -> build/bdist.linux-i686/wheel/./bioregistry/external/go copying build/lib/bioregistry/external/go/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/go creating build/bdist.linux-i686/wheel/bioregistry/external/biocontext copying build/lib/bioregistry/external/biocontext/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/biocontext copying build/lib/bioregistry/external/biocontext/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/biocontext creating build/bdist.linux-i686/wheel/bioregistry/external/aberowl copying build/lib/bioregistry/external/aberowl/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/aberowl copying build/lib/bioregistry/external/aberowl/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/aberowl creating build/bdist.linux-i686/wheel/bioregistry/external/n2t copying build/lib/bioregistry/external/n2t/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/n2t copying build/lib/bioregistry/external/n2t/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/n2t creating build/bdist.linux-i686/wheel/bioregistry/external/zazuko copying build/lib/bioregistry/external/zazuko/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/zazuko copying build/lib/bioregistry/external/zazuko/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/zazuko creating build/bdist.linux-i686/wheel/bioregistry/external/fairsharing copying build/lib/bioregistry/external/fairsharing/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/fairsharing copying build/lib/bioregistry/external/fairsharing/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/fairsharing copying build/lib/bioregistry/external/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external creating build/bdist.linux-i686/wheel/bioregistry/external/miriam copying build/lib/bioregistry/external/miriam/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/miriam copying build/lib/bioregistry/external/miriam/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/miriam creating build/bdist.linux-i686/wheel/bioregistry/external/ols copying build/lib/bioregistry/external/ols/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/ols copying build/lib/bioregistry/external/ols/processing_ols.json -> build/bdist.linux-i686/wheel/./bioregistry/external/ols copying build/lib/bioregistry/external/ols/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/ols creating build/bdist.linux-i686/wheel/bioregistry/external/cellosaurus copying build/lib/bioregistry/external/cellosaurus/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/cellosaurus copying build/lib/bioregistry/external/cellosaurus/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/cellosaurus creating build/bdist.linux-i686/wheel/bioregistry/curation copying build/lib/bioregistry/curation/fix_obo_purls.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/rename_metaprefix.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/make_health_report_curation_sheet.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_examples.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_co_providers.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_descriptions_from_gs.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/make_description_curation_sheet.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/map_bartoc_via_wikidata.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/import_pc_semiautomatic.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/deprecation_diff.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_examples_from_javert.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/review_pc.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/cleanup_authors.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_ontology_regexes.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/clean_licenses.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/map_re3data_via_fairsharing.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/bulk_import.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/clean_publications.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/add_examples_from_ols.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/clean_name_suffixes.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/suggest_uniprot_providers.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/suggest_author_curation.py -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/curated_papers.csv -> build/bdist.linux-i686/wheel/./bioregistry/curation copying build/lib/bioregistry/curation/enrich_publications.py -> build/bdist.linux-i686/wheel/./bioregistry/curation creating build/bdist.linux-i686/wheel/bioregistry/schema copying build/lib/bioregistry/schema/schema.json -> build/bdist.linux-i686/wheel/./bioregistry/schema copying build/lib/bioregistry/schema/struct.py -> build/bdist.linux-i686/wheel/./bioregistry/schema copying build/lib/bioregistry/schema/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/schema copying build/lib/bioregistry/schema/utils.py -> build/bdist.linux-i686/wheel/./bioregistry/schema copying build/lib/bioregistry/schema/constants.py -> build/bdist.linux-i686/wheel/./bioregistry/schema copying build/lib/bioregistry/pandas.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/parse_version_iri.py -> build/bdist.linux-i686/wheel/./bioregistry creating build/bdist.linux-i686/wheel/bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/curie_parsing.py -> build/bdist.linux-i686/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/curie_validation.py -> build/bdist.linux-i686/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/__main__.py -> build/bdist.linux-i686/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/uri_parsing.py -> build/bdist.linux-i686/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/benchmarks/cli.py -> build/bdist.linux-i686/wheel/./bioregistry/benchmarks copying build/lib/bioregistry/version.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/upload_ndex.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/__main__.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/parse_iri.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/resolve.py -> build/bdist.linux-i686/wheel/./bioregistry creating build/bdist.linux-i686/wheel/bioregistry/gh copying build/lib/bioregistry/gh/new_prefix.py -> build/bdist.linux-i686/wheel/./bioregistry/gh copying build/lib/bioregistry/gh/github_client.py -> build/bdist.linux-i686/wheel/./bioregistry/gh copying build/lib/bioregistry/gh/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/gh copying build/lib/bioregistry/schema_utils.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/lint.py -> build/bdist.linux-i686/wheel/./bioregistry creating build/bdist.linux-i686/wheel/bioregistry/app copying build/lib/bioregistry/app/ui.py -> build/bdist.linux-i686/wheel/./bioregistry/app copying build/lib/bioregistry/app/api.py -> build/bdist.linux-i686/wheel/./bioregistry/app creating build/bdist.linux-i686/wheel/bioregistry/app/templates creating build/bdist.linux-i686/wheel/bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/download.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/sustainability.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/schema.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/access.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/summary.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/related.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/meta/acknowledgements.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta copying build/lib/bioregistry/app/templates/base.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/reference.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/macros.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/collections.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates creating build/bdist.linux-i686/wheel/bioregistry/app/templates/resolve_errors copying build/lib/bioregistry/app/templates/resolve_errors/invalid_identifier.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/resolve_errors copying build/lib/bioregistry/app/templates/resolve_errors/missing_providers.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/resolve_errors copying build/lib/bioregistry/app/templates/resolve_errors/disallowed_identifier.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/resolve_errors copying build/lib/bioregistry/app/templates/resolve_errors/missing_prefix.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/resolve_errors copying build/lib/bioregistry/app/templates/contributors.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/collection.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/contexts.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/context.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/prose.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/resources.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/metaresource.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/home.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/contributor.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/metaresources.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates creating build/bdist.linux-i686/wheel/bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/highlights/owners.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/highlights/keywords.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/highlights/relations.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/highlights/twitter.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/resource.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/proxies.py -> build/bdist.linux-i686/wheel/./bioregistry/app copying build/lib/bioregistry/app/wsgi.py -> build/bdist.linux-i686/wheel/./bioregistry/app copying build/lib/bioregistry/app/test.py -> build/bdist.linux-i686/wheel/./bioregistry/app copying build/lib/bioregistry/app/impl.py -> build/bdist.linux-i686/wheel/./bioregistry/app copying build/lib/bioregistry/app/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/app copying build/lib/bioregistry/app/utils.py -> build/bdist.linux-i686/wheel/./bioregistry/app creating build/bdist.linux-i686/wheel/bioregistry/app/static copying build/lib/bioregistry/app/static/logo.svg -> build/bdist.linux-i686/wheel/./bioregistry/app/static copying build/lib/bioregistry/app/cli.py -> build/bdist.linux-i686/wheel/./bioregistry/app copying build/lib/bioregistry/app/constants.py -> build/bdist.linux-i686/wheel/./bioregistry/app copying build/lib/bioregistry/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry creating build/bdist.linux-i686/wheel/bioregistry/analysis copying build/lib/bioregistry/analysis/paper_ranking.py -> build/bdist.linux-i686/wheel/./bioregistry/analysis copying build/lib/bioregistry/analysis/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/analysis copying build/lib/bioregistry/analysis/bioregistry_diff.py -> build/bdist.linux-i686/wheel/./bioregistry/analysis copying build/lib/bioregistry/analysis/paper_ranking_requirements.txt -> build/bdist.linux-i686/wheel/./bioregistry/analysis copying build/lib/bioregistry/compare.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/resource_manager.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/utils.py -> build/bdist.linux-i686/wheel/./bioregistry creating build/bdist.linux-i686/wheel/bioregistry/export copying build/lib/bioregistry/export/prefixcc.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/rdf_export.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/tables_export.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/prefix_maps.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/tsv_export.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/yaml_export.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/__main__.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/warnings_export.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/cli.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/schema_export.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/sssom_export.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/bibliometrics.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/cli.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/constants.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/resolve_identifier.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/uri_format.py -> build/bdist.linux-i686/wheel/./bioregistry running install_egg_info Copying src/bioregistry.egg-info to build/bdist.linux-i686/wheel/./bioregistry-0.11.12.egg-info running install_scripts creating build/bdist.linux-i686/wheel/bioregistry-0.11.12.dist-info/WHEEL creating '/build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/.tmp-9lt779j9/bioregistry-0.11.12-py3-none-any.whl' and adding 'build/bdist.linux-i686/wheel' to it adding 'bioregistry/__init__.py' adding 'bioregistry/__main__.py' adding 'bioregistry/bibliometrics.py' adding 'bioregistry/cli.py' adding 'bioregistry/collection_api.py' adding 'bioregistry/compare.py' adding 'bioregistry/constants.py' adding 'bioregistry/license_standardizer.py' adding 'bioregistry/lint.py' adding 'bioregistry/metaresource_api.py' adding 'bioregistry/pandas.py' adding 'bioregistry/parse_iri.py' adding 'bioregistry/parse_version_iri.py' adding 'bioregistry/py.typed' adding 'bioregistry/record_accumulator.py' adding 'bioregistry/resolve.py' adding 'bioregistry/resolve_identifier.py' adding 'bioregistry/resource_manager.py' adding 'bioregistry/schema_utils.py' adding 'bioregistry/summary.py' adding 'bioregistry/upload_ndex.py' adding 'bioregistry/uri_format.py' adding 'bioregistry/utils.py' adding 'bioregistry/version.py' adding 'bioregistry/analysis/__init__.py' adding 'bioregistry/analysis/bioregistry_diff.py' adding 'bioregistry/analysis/paper_ranking.py' adding 'bioregistry/analysis/paper_ranking_requirements.txt' adding 'bioregistry/app/__init__.py' adding 'bioregistry/app/api.py' adding 'bioregistry/app/cli.py' adding 'bioregistry/app/constants.py' adding 'bioregistry/app/impl.py' adding 'bioregistry/app/proxies.py' adding 'bioregistry/app/test.py' adding 'bioregistry/app/ui.py' adding 'bioregistry/app/utils.py' adding 'bioregistry/app/wsgi.py' adding 'bioregistry/app/static/logo.svg' adding 'bioregistry/app/templates/base.html' adding 'bioregistry/app/templates/collection.html' adding 'bioregistry/app/templates/collections.html' adding 'bioregistry/app/templates/context.html' adding 'bioregistry/app/templates/contexts.html' adding 'bioregistry/app/templates/contributor.html' adding 'bioregistry/app/templates/contributors.html' adding 'bioregistry/app/templates/home.html' adding 'bioregistry/app/templates/macros.html' adding 'bioregistry/app/templates/metaresource.html' adding 'bioregistry/app/templates/metaresources.html' adding 'bioregistry/app/templates/prose.html' adding 'bioregistry/app/templates/reference.html' adding 'bioregistry/app/templates/resource.html' adding 'bioregistry/app/templates/resources.html' adding 'bioregistry/app/templates/highlights/keywords.html' adding 'bioregistry/app/templates/highlights/owners.html' adding 'bioregistry/app/templates/highlights/relations.html' adding 'bioregistry/app/templates/highlights/twitter.html' adding 'bioregistry/app/templates/meta/access.html' adding 'bioregistry/app/templates/meta/acknowledgements.html' adding 'bioregistry/app/templates/meta/download.html' adding 'bioregistry/app/templates/meta/related.html' adding 'bioregistry/app/templates/meta/schema.html' adding 'bioregistry/app/templates/meta/summary.html' adding 'bioregistry/app/templates/meta/sustainability.html' adding 'bioregistry/app/templates/resolve_errors/disallowed_identifier.html' adding 'bioregistry/app/templates/resolve_errors/invalid_identifier.html' adding 'bioregistry/app/templates/resolve_errors/missing_prefix.html' adding 'bioregistry/app/templates/resolve_errors/missing_providers.html' adding 'bioregistry/benchmarks/__init__.py' adding 'bioregistry/benchmarks/__main__.py' adding 'bioregistry/benchmarks/cli.py' adding 'bioregistry/benchmarks/curie_parsing.py' adding 'bioregistry/benchmarks/curie_validation.py' adding 'bioregistry/benchmarks/uri_parsing.py' adding 'bioregistry/curation/__init__.py' adding 'bioregistry/curation/add_co_providers.py' adding 'bioregistry/curation/add_descriptions_from_gs.py' adding 'bioregistry/curation/add_examples.py' adding 'bioregistry/curation/add_examples_from_javert.py' adding 'bioregistry/curation/add_examples_from_ols.py' adding 'bioregistry/curation/add_ontology_regexes.py' adding 'bioregistry/curation/bulk_import.py' adding 'bioregistry/curation/clean_licenses.py' adding 'bioregistry/curation/clean_name_suffixes.py' adding 'bioregistry/curation/clean_publications.py' adding 'bioregistry/curation/cleanup_authors.py' adding 'bioregistry/curation/curated_papers.csv' adding 'bioregistry/curation/deprecation_diff.py' adding 'bioregistry/curation/enrich_publications.py' adding 'bioregistry/curation/fix_obo_purls.py' adding 'bioregistry/curation/import_pc_semiautomatic.py' adding 'bioregistry/curation/make_description_curation_sheet.py' adding 'bioregistry/curation/make_health_report_curation_sheet.py' adding 'bioregistry/curation/map_bartoc_via_wikidata.py' adding 'bioregistry/curation/map_re3data_via_fairsharing.py' adding 'bioregistry/curation/rename_metaprefix.py' adding 'bioregistry/curation/review_pc.py' adding 'bioregistry/curation/suggest_author_curation.py' adding 'bioregistry/curation/suggest_uniprot_providers.py' adding 'bioregistry/data/README.md' adding 'bioregistry/data/__init__.py' adding 'bioregistry/data/bioregistry.json' adding 'bioregistry/data/collections.json' adding 'bioregistry/data/contexts.json' adding 'bioregistry/data/metaregistry.json' adding 'bioregistry/data/mismatch.json' adding 'bioregistry/export/__init__.py' adding 'bioregistry/export/__main__.py' adding 'bioregistry/export/cli.py' adding 'bioregistry/export/prefix_maps.py' adding 'bioregistry/export/prefixcc.py' adding 'bioregistry/export/rdf_export.py' adding 'bioregistry/export/schema_export.py' adding 'bioregistry/export/sssom_export.py' adding 'bioregistry/export/tables_export.py' adding 'bioregistry/export/tsv_export.py' adding 'bioregistry/export/warnings_export.py' adding 'bioregistry/export/yaml_export.py' adding 'bioregistry/external/__init__.py' adding 'bioregistry/external/align.py' adding 'bioregistry/external/alignment_utils.py' adding 'bioregistry/external/aberowl/__init__.py' adding 'bioregistry/external/aberowl/processed.json' adding 'bioregistry/external/bartoc/__init__.py' adding 'bioregistry/external/bartoc/processed.json' adding 'bioregistry/external/biocontext/__init__.py' adding 'bioregistry/external/biocontext/processed.json' adding 'bioregistry/external/biolink/__init__.py' adding 'bioregistry/external/biolink/processed.json' adding 'bioregistry/external/biolink/processing_biolink.json' adding 'bioregistry/external/bioportal/__init__.py' adding 'bioregistry/external/bioportal/agroportal.json' adding 'bioregistry/external/bioportal/agroportal.py' adding 'bioregistry/external/bioportal/bioportal.json' adding 'bioregistry/external/bioportal/bioportal.py' adding 'bioregistry/external/bioportal/ecoportal.json' adding 'bioregistry/external/bioportal/ecoportal.py' adding 'bioregistry/external/cellosaurus/__init__.py' adding 'bioregistry/external/cellosaurus/processed.json' adding 'bioregistry/external/cheminf/__init__.py' adding 'bioregistry/external/cheminf/processed.json' adding 'bioregistry/external/cropoct/__init__.py' adding 'bioregistry/external/cropoct/processed.json' adding 'bioregistry/external/edam/__init__.py' adding 'bioregistry/external/edam/processed.json' adding 'bioregistry/external/fairsharing/__init__.py' adding 'bioregistry/external/fairsharing/processed.json' adding 'bioregistry/external/go/__init__.py' adding 'bioregistry/external/go/processed.json' adding 'bioregistry/external/go/processing_go.json' adding 'bioregistry/external/hl7/OID_Report.csv' adding 'bioregistry/external/hl7/__init__.py' adding 'bioregistry/external/integbio/__init__.py' adding 'bioregistry/external/integbio/processed.json' adding 'bioregistry/external/lov/__init__.py' adding 'bioregistry/external/lov/processed.json' adding 'bioregistry/external/miriam/__init__.py' adding 'bioregistry/external/miriam/processed.json' adding 'bioregistry/external/n2t/__init__.py' adding 'bioregistry/external/n2t/processed.json' adding 'bioregistry/external/ncbi/__init__.py' adding 'bioregistry/external/ncbi/processed.json' adding 'bioregistry/external/obofoundry/__init__.py' adding 'bioregistry/external/obofoundry/processed.json' adding 'bioregistry/external/ols/__init__.py' adding 'bioregistry/external/ols/processed.json' adding 'bioregistry/external/ols/processing_ols.json' adding 'bioregistry/external/ontobee/__init__.py' adding 'bioregistry/external/ontobee/processed.json' adding 'bioregistry/external/pathguide/__init__.py' adding 'bioregistry/external/prefixcommons/__init__.py' adding 'bioregistry/external/prefixcommons/processed.json' adding 'bioregistry/external/re3data/__init__.py' adding 'bioregistry/external/re3data/processed.json' adding 'bioregistry/external/rrid/__init__.py' adding 'bioregistry/external/togoid/__init__.py' adding 'bioregistry/external/togoid/processed.json' adding 'bioregistry/external/uniprot/__init__.py' adding 'bioregistry/external/uniprot/processed.json' adding 'bioregistry/external/wikidata/__init__.py' adding 'bioregistry/external/wikidata/processed.json' adding 'bioregistry/external/zazuko/__init__.py' adding 'bioregistry/external/zazuko/processed.json' adding 'bioregistry/gh/__init__.py' adding 'bioregistry/gh/github_client.py' adding 'bioregistry/gh/new_prefix.py' adding 'bioregistry/health/__init__.py' adding 'bioregistry/health/__main__.py' adding 'bioregistry/health/check_homepages.py' adding 'bioregistry/health/check_providers.py' adding 'bioregistry/health/cli.py' adding 'bioregistry/schema/__init__.py' adding 'bioregistry/schema/constants.py' adding 'bioregistry/schema/schema.json' adding 'bioregistry/schema/struct.py' adding 'bioregistry/schema/utils.py' adding 'bioregistry-0.11.12.dist-info/LICENSE' adding 'bioregistry-0.11.12.dist-info/METADATA' adding 'bioregistry-0.11.12.dist-info/WHEEL' adding 'bioregistry-0.11.12.dist-info/entry_points.txt' adding 'bioregistry-0.11.12.dist-info/top_level.txt' adding 'bioregistry-0.11.12.dist-info/RECORD' removing build/bdist.linux-i686/wheel Successfully built bioregistry-0.11.12-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build; python3.13 -m pytest -k 'not test_url and not test_url_banana and not test_obolibrary_example and not test_usages ' ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build configfile: pyproject.toml plugins: typeguard-4.4.2, anyio-4.7.0 collected 137 items / 6 deselected / 131 selected tests/test_api.py . [ 0%] tests/test_collections.py ... [ 3%] tests/test_contexts.py .... [ 6%] tests/test_data.py ...................s............................s... [ 45%] tests/test_data_slow.py ... [ 48%] tests/test_duplicates.py .. [ 49%] tests/test_identifiers_org.py .... [ 52%] tests/test_indra.py ss [ 54%] tests/test_manager.py ........... [ 62%] tests/test_metaregistry.py ..... [ 66%] tests/test_obofoundry.py . [ 67%] tests/test_ols.py . [ 67%] tests/test_pandas.py .s.... [ 72%] tests/test_resolve.py ....... [ 77%] tests/test_sparql.py s [ 78%] tests/test_utils.py .. [ 80%] tests/test_web/test_api.py ................ [ 92%] tests/test_web/test_ui.py .......... [100%] =============================== warnings summary =============================== bioregistry/schema_utils.py:61: 1778 warnings tests/test_contexts.py: 1778 warnings tests/test_manager.py: 19558 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/schema_utils.py:61: PydanticDeprecatedSince20: The `parse_obj` method is deprecated; use `model_validate` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ return {prefix: Resource.parse_obj(value) for prefix, value in data.items()} bioregistry/schema/struct.py:648: 7112 warnings tests/test_api.py: 7 warnings tests/test_collections.py: 58 warnings tests/test_contexts.py: 209240 warnings tests/test_data.py: 230996 warnings tests/test_data_slow.py: 334389 warnings tests/test_identifiers_org.py: 1497 warnings tests/test_manager.py: 422132 warnings tests/test_metaregistry.py: 245 warnings tests/test_resolve.py: 8418 warnings tests/test_web/test_api.py: 4180 warnings tests/test_web/test_ui.py: 13217 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/schema/struct.py:648: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ return self.dict().get(metaprefix) or dict() bioregistry/app/api.py:137 /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/app/api.py:137: DeprecationWarning: `example` has been deprecated, please use `examples` instead prefix: str = Path( bioregistry/app/api.py:185 /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/app/api.py:185: DeprecationWarning: `example` has been deprecated, please use `examples` instead METAPREFIX_PATH = Path( bioregistry/app/api.py:353 /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/app/api.py:353: DeprecationWarning: `example` has been deprecated, please use `examples` instead identifier: str = Path( bioregistry/app/api.py:405 /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/app/api.py:405: DeprecationWarning: `example` has been deprecated, please use `examples` instead identifier: str = Path(title="Context Key", description="The context key", example="obo"), ../../../../../../usr/lib/python3/dist-packages/starlette/middleware/wsgi.py:14 /usr/lib/python3/dist-packages/starlette/middleware/wsgi.py:14: DeprecationWarning: starlette.middleware.wsgi is deprecated and will be removed in a future release. Please refer to https://github.com/abersheeran/a2wsgi as a replacement. warnings.warn( tests/test_api.py: 7 warnings tests/test_collections.py: 18 warnings tests/test_contexts.py: 31539 warnings tests/test_data.py: 43942 warnings tests/test_data_slow.py: 47708 warnings tests/test_identifiers_org.py: 778 warnings tests/test_manager.py: 48395 warnings tests/test_metaregistry.py: 56 warnings tests/test_resolve.py: 3454 warnings tests/test_web/test_api.py: 2727 warnings tests/test_web/test_ui.py: 5177 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/schema/struct.py:673: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ rv = self.dict().get(key) tests/test_collections.py: 13 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/tests/test_collections.py:31: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ collection = collection_pydantic.dict() tests/test_data.py::TestRegistry::test_keys /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/tests/test_data.py:83: PydanticDeprecatedSince20: The `__fields__` attribute is deprecated, use `model_fields` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ keys = set(Resource.__fields__.keys()) tests/test_data.py: 1404 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/tests/test_data.py:875: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ for key, value in publication.dict().items(): tests/test_manager.py: 3021 warnings tests/test_web/test_api.py: 38 warnings tests/test_web/test_ui.py: 31 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/schema/struct.py:2853: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ records = [publication.dict(exclude_none=True) for publication in publications] tests/test_manager.py: 99 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/schema/struct.py:1296: PydanticDeprecatedSince20: The `parse_obj` method is deprecated; use `model_validate` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ publications.append(Publication.parse_obj(publication)) tests/test_metaregistry.py: 32 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/tests/test_metaregistry.py:84: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ invalid_keys = set(registry.dict()).difference(Registry.__fields__) tests/test_metaregistry.py: 32 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/tests/test_metaregistry.py:84: PydanticDeprecatedSince20: The `__fields__` attribute is deprecated, use `model_fields` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ invalid_keys = set(registry.dict()).difference(Registry.__fields__) tests/test_web/test_api.py::TestWeb::test_api_collection tests/test_web/test_api.py::TestWeb::test_api_metaresource tests/test_web/test_api.py::TestWeb::test_api_resource /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/app/api.py:57: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ content = content.dict( tests/test_web/test_api.py: 2390 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/schema/utils.py:30: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ return sanitize_dict(base_model.dict(**kwargs)) tests/test_web/test_api.py: 3556 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/tests/test_web/test_api.py:59: PydanticDeprecatedSince20: The `parse_obj` method is deprecated; use `model_validate` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ return {key: Resource.parse_obj(resource) for key, resource in data} tests/test_web/test_api.py: 1778 warnings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/tests/test_web/test_api.py:93: PydanticDeprecatedSince20: The `parse_obj` method is deprecated; use `model_validate` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ return {key: Resource.parse_obj(resource) for key, resource in data} tests/test_web/test_api.py::TestWeb::test_external_registry_mappings /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/tests/test_web/test_api.py:237: PydanticDeprecatedSince20: The `parse_obj` method is deprecated; use `model_validate` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ res_parsed = MappingResponse.parse_obj(res.json()) tests/test_web/test_api.py::TestWeb::test_iri_mapping /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/tests/test_web/test_api.py:255: PydanticDeprecatedSince20: The `parse_obj` method is deprecated; use `model_validate` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ data = URIResponse.parse_obj(res.json()) tests/test_web/test_api.py::TestWeb::test_ui_resource_rdf tests/test_web/test_ui.py::TestUI::test_ui_collection_rdf tests/test_web/test_ui.py::TestUI::test_ui_registry_rdf /usr/lib/python3/dist-packages/rdflib/plugins/parsers/notation3.py:2050: DeprecationWarning: ConjunctiveGraph is deprecated, use Dataset instead. conj_graph = ConjunctiveGraph(store=graph.store) tests/test_web/test_ui.py::TestUI::test_ui /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/app/ui.py:274: PydanticDeprecatedSince20: The `schema` method is deprecated; use `model_json_schema` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ schema=Context.schema(), tests/test_web/test_ui.py::TestUI::test_ui /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/app/ui.py:288: PydanticDeprecatedSince20: The `schema` method is deprecated; use `model_json_schema` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ schema=Context.schema()["properties"], tests/test_web/test_ui.py: 22 warnings /usr/lib/python3/dist-packages/jinja2/environment.py:490: PydanticDeprecatedSince20: The `__fields__` attribute is deprecated, use `model_fields` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ return getattr(obj, attribute) tests/test_web/test_ui.py::TestUI::test_ui_collection_json /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/app/utils.py:181: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ json.dumps(data.dict(exclude_unset=True, exclude_none=True), ensure_ascii=False), tests/test_web/test_ui.py::TestUI::test_ui_collection_json /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build/bioregistry/app/utils.py:186: PydanticDeprecatedSince20: The `dict` method is deprecated; use `model_dump` instead. Deprecated in Pydantic V2.0 to be removed in V3.0. See Pydantic V2 Migration Guide at https://errors.pydantic.dev/2.10/migration/ yaml.safe_dump(data.dict(exclude_unset=True, exclude_none=True), allow_unicode=True), -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html == 125 passed, 6 skipped, 6 deselected, 1450840 warnings in 755.11s (0:12:35) == create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-bioregistry/ -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir debian/rules execute_after_dh_auto_install make[1]: Entering directory '/build/reproducible-path/python-bioregistry-0.11.12' sed -i 's#https://raw.githubusercontent.com/biopragmatics/bioregistry/main/docs/img/#file://#' \ debian/python3-bioregistry/usr/lib/python3*/dist-packages/bioregistry/app/templates/meta/summary.html make[1]: Leaving directory '/build/reproducible-path/python-bioregistry-0.11.12' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-bioregistry' in '../python3-bioregistry_0.11.12-3_all.deb'. dpkg-genbuildinfo --build=binary -O../python-bioregistry_0.11.12-3_i386.buildinfo dpkg-genchanges --build=binary -O../python-bioregistry_0.11.12-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from python-bioregistry-0.11.12/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/32152/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/32152/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/32152 and its subdirectories I: Current time: Mon Mar 10 21:26:06 +14 2025 I: pbuilder-time-stamp: 1741591566 + false + set +x Mon Mar 10 07:26:07 UTC 2025 I: Signing ./b2/python-bioregistry_0.11.12-3_i386.buildinfo as python-bioregistry_0.11.12-3_i386.buildinfo.asc Mon Mar 10 07:26:07 UTC 2025 I: Signed ./b2/python-bioregistry_0.11.12-3_i386.buildinfo as ./b2/python-bioregistry_0.11.12-3_i386.buildinfo.asc Mon Mar 10 07:26:07 UTC 2025 - build #2 for python-bioregistry/trixie/i386 on ionos2-i386 done. Starting cleanup. All cleanup done. Mon Mar 10 07:26:07 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-HRjKnp4G, removing. /srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22: total 160 drwxr-xr-x 2 jenkins jenkins 4096 Mar 10 07:09 b1 drwxr-xr-x 2 jenkins jenkins 4096 Mar 10 07:26 b2 -rw-r--r-- 1 jenkins jenkins 2627 Sep 11 11:03 python-bioregistry_0.11.12-3.dsc -rw------- 1 jenkins jenkins 143544 Mar 10 07:09 rbuildlog.A4J8wXt /srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22/b1: total 4004 -rw-r--r-- 1 jenkins jenkins 139452 Mar 10 07:09 build.log -rw-r--r-- 1 jenkins jenkins 7760 Mar 10 07:09 python-bioregistry_0.11.12-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2627 Mar 10 07:09 python-bioregistry_0.11.12-3.dsc -rw-r--r-- 1 jenkins jenkins 7796 Mar 10 07:09 python-bioregistry_0.11.12-3_i386.buildinfo -rw-r--r-- 1 jenkins jenkins 8678 Mar 10 07:09 python-bioregistry_0.11.12-3_i386.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1206 Mar 10 07:09 python-bioregistry_0.11.12-3_i386.changes -rw-r--r-- 1 jenkins jenkins 1359 Mar 10 07:09 python-bioregistry_0.11.12-3_source.changes -rw-r--r-- 1 jenkins jenkins 3907148 Mar 10 07:09 python3-bioregistry_0.11.12-3_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22/b2: total 4004 -rw-r--r-- 1 jenkins jenkins 141357 Mar 10 07:26 build.log -rw-r--r-- 1 jenkins jenkins 7760 Mar 10 07:26 python-bioregistry_0.11.12-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2627 Mar 10 07:26 python-bioregistry_0.11.12-3.dsc -rw-r--r-- 1 jenkins jenkins 7796 Mar 10 07:26 python-bioregistry_0.11.12-3_i386.buildinfo -rw-r--r-- 1 jenkins jenkins 8678 Mar 10 07:26 python-bioregistry_0.11.12-3_i386.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1206 Mar 10 07:26 python-bioregistry_0.11.12-3_i386.changes -rw-r--r-- 1 jenkins jenkins 1359 Mar 10 07:26 python-bioregistry_0.11.12-3_source.changes -rw-r--r-- 1 jenkins jenkins 3907148 Mar 10 07:26 python3-bioregistry_0.11.12-3_all.deb Mon Mar 10 07:26:08 UTC 2025 I: Deleting $TMPDIR on ionos2-i386.debian.net. Mon Mar 10 07:26:09 UTC 2025 I: python-bioregistry_0.11.12-3_i386.changes: Format: 1.8 Date: Wed, 11 Sep 2024 11:35:43 +0200 Source: python-bioregistry Binary: python3-bioregistry Architecture: all Version: 0.11.12-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Alexandre Detiste Description: python3-bioregistry - community curated registry, meta-registry, and compact identifier Closes: 1080722 Changes: python-bioregistry (0.11.12-3) unstable; urgency=medium . * Add dependency on python3-setuptools (Closes: #1080722) Checksums-Sha1: da650433c272ae7d73b54fbac720b2ac07a8e858 7796 python-bioregistry_0.11.12-3_i386.buildinfo 4274b85cf3f19b1b55aca4ee69aa3c5ec4a216eb 3907148 python3-bioregistry_0.11.12-3_all.deb Checksums-Sha256: 3451e2a724dbc2eeb5537806a120798e132eb4e1a80b79001469970300d53fe2 7796 python-bioregistry_0.11.12-3_i386.buildinfo 555c02b3ee655ce856c6086f5d1e0e4abdf2b31c64efc187cfa798acd25169df 3907148 python3-bioregistry_0.11.12-3_all.deb Files: 5f5e53201274da8784e328f65a9eaa6c 7796 science optional python-bioregistry_0.11.12-3_i386.buildinfo 777c80a5510fb99d8188bb054708dc19 3907148 python optional python3-bioregistry_0.11.12-3_all.deb Diff of the two buildlogs: -- --- b1/build.log 2025-03-10 07:09:57.528410767 +0000 +++ b2/build.log 2025-03-10 07:26:08.824758928 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Apr 12 01:26:22 -12 2026 -I: pbuilder-time-stamp: 1776000382 +I: Current time: Mon Mar 10 21:10:04 +14 2025 +I: pbuilder-time-stamp: 1741590604 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -26,54 +26,86 @@ dpkg-source: info: applying vendor_more_click.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/43544/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/32152/tmp/hooks/D01_modify_environment starting +debug: Running on ionos2-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 10 07:10 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/32152/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/32152/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='9d47ecf4f95243839a890a0f1a572362' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='43544' - PS1='# ' - PS2='> ' + INVOCATION_ID=31f458503e164cc3b3a6126506c7b1f3 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=32152 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22/pbuilderrc_6ZGZ --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22/b1 --logfile b1/build.log python-bioregistry_0.11.12-3.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22/pbuilderrc_0E5f --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22/b2 --logfile b2/build.log python-bioregistry_0.11.12-3.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos16-i386 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/43544/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/32152/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -282,7 +314,7 @@ Get: 127 http://deb.debian.org/debian trixie/main i386 python3-rdflib-endpoint all 0.5.1-2 [14.2 kB] Get: 128 http://deb.debian.org/debian trixie/main i386 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 129 http://deb.debian.org/debian trixie/main i386 python3-yaml i386 6.0.2-1+b2 [135 kB] -Fetched 54.6 MB in 1s (46.9 MB/s) +Fetched 54.6 MB in 1s (69.9 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19787 files and directories currently installed.) @@ -699,8 +731,8 @@ Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun Apr 12 13:26:46 UTC 2026. -Universal Time is now: Sun Apr 12 13:26:46 UTC 2026. +Local time is now: Mon Mar 10 07:10:49 UTC 2025. +Universal Time is now: Mon Mar 10 07:10:49 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -834,7 +866,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-bioregistry-0.11.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-bioregistry_0.11.12-3_source.changes +I: user script /srv/workspace/pbuilder/32152/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/32152/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-bioregistry-0.11.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-bioregistry_0.11.12-3_source.changes dpkg-buildpackage: info: source package python-bioregistry dpkg-buildpackage: info: source version 0.11.12-3 dpkg-buildpackage: info: source distribution unstable @@ -861,168 +897,168 @@ running build_py creating build/lib/bioregistry copying src/bioregistry/metaresource_api.py -> build/lib/bioregistry +copying src/bioregistry/summary.py -> build/lib/bioregistry +copying src/bioregistry/collection_api.py -> build/lib/bioregistry +copying src/bioregistry/record_accumulator.py -> build/lib/bioregistry copying src/bioregistry/license_standardizer.py -> build/lib/bioregistry -copying src/bioregistry/lint.py -> build/lib/bioregistry -copying src/bioregistry/resource_manager.py -> build/lib/bioregistry -copying src/bioregistry/version.py -> build/lib/bioregistry -copying src/bioregistry/constants.py -> build/lib/bioregistry -copying src/bioregistry/compare.py -> build/lib/bioregistry copying src/bioregistry/pandas.py -> build/lib/bioregistry -copying src/bioregistry/resolve_identifier.py -> build/lib/bioregistry -copying src/bioregistry/bibliometrics.py -> build/lib/bioregistry +copying src/bioregistry/parse_version_iri.py -> build/lib/bioregistry +copying src/bioregistry/version.py -> build/lib/bioregistry +copying src/bioregistry/upload_ndex.py -> build/lib/bioregistry copying src/bioregistry/__main__.py -> build/lib/bioregistry -copying src/bioregistry/record_accumulator.py -> build/lib/bioregistry -copying src/bioregistry/resolve.py -> build/lib/bioregistry -copying src/bioregistry/summary.py -> build/lib/bioregistry copying src/bioregistry/parse_iri.py -> build/lib/bioregistry -copying src/bioregistry/__init__.py -> build/lib/bioregistry +copying src/bioregistry/resolve.py -> build/lib/bioregistry copying src/bioregistry/schema_utils.py -> build/lib/bioregistry -copying src/bioregistry/collection_api.py -> build/lib/bioregistry +copying src/bioregistry/lint.py -> build/lib/bioregistry +copying src/bioregistry/__init__.py -> build/lib/bioregistry +copying src/bioregistry/compare.py -> build/lib/bioregistry +copying src/bioregistry/resource_manager.py -> build/lib/bioregistry copying src/bioregistry/utils.py -> build/lib/bioregistry -copying src/bioregistry/uri_format.py -> build/lib/bioregistry -copying src/bioregistry/upload_ndex.py -> build/lib/bioregistry -copying src/bioregistry/parse_version_iri.py -> build/lib/bioregistry +copying src/bioregistry/bibliometrics.py -> build/lib/bioregistry copying src/bioregistry/cli.py -> build/lib/bioregistry -creating build/lib/bioregistry/gh -copying src/bioregistry/gh/github_client.py -> build/lib/bioregistry/gh -copying src/bioregistry/gh/__init__.py -> build/lib/bioregistry/gh -copying src/bioregistry/gh/new_prefix.py -> build/lib/bioregistry/gh +copying src/bioregistry/constants.py -> build/lib/bioregistry +copying src/bioregistry/resolve_identifier.py -> build/lib/bioregistry +copying src/bioregistry/uri_format.py -> build/lib/bioregistry +creating build/lib/bioregistry/health +copying src/bioregistry/health/check_homepages.py -> build/lib/bioregistry/health +copying src/bioregistry/health/__main__.py -> build/lib/bioregistry/health +copying src/bioregistry/health/__init__.py -> build/lib/bioregistry/health +copying src/bioregistry/health/check_providers.py -> build/lib/bioregistry/health +copying src/bioregistry/health/cli.py -> build/lib/bioregistry/health +creating build/lib/bioregistry/data +copying src/bioregistry/data/__init__.py -> build/lib/bioregistry/data +creating build/lib/bioregistry/external +copying src/bioregistry/external/align.py -> build/lib/bioregistry/external +copying src/bioregistry/external/alignment_utils.py -> build/lib/bioregistry/external +copying src/bioregistry/external/__init__.py -> build/lib/bioregistry/external creating build/lib/bioregistry/curation -copying src/bioregistry/curation/add_examples.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/clean_publications.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/cleanup_authors.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/import_pc_semiautomatic.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/map_bartoc_via_wikidata.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/fix_obo_purls.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/add_examples_from_ols.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/suggest_uniprot_providers.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/clean_name_suffixes.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/rename_metaprefix.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/make_health_report_curation_sheet.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/add_examples.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/add_co_providers.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_descriptions_from_gs.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/add_examples_from_javert.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/make_description_curation_sheet.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/map_bartoc_via_wikidata.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/import_pc_semiautomatic.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/deprecation_diff.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/add_examples_from_javert.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/review_pc.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/cleanup_authors.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/add_ontology_regexes.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/__init__.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/clean_licenses.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/map_re3data_via_fairsharing.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/rename_metaprefix.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/review_pc.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/make_health_report_curation_sheet.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/bulk_import.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/clean_publications.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/add_examples_from_ols.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/__init__.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/clean_name_suffixes.py -> build/lib/bioregistry/curation +copying src/bioregistry/curation/suggest_uniprot_providers.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/suggest_author_curation.py -> build/lib/bioregistry/curation copying src/bioregistry/curation/enrich_publications.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/make_description_curation_sheet.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/bulk_import.py -> build/lib/bioregistry/curation -copying src/bioregistry/curation/add_co_providers.py -> build/lib/bioregistry/curation -creating build/lib/bioregistry/external -copying src/bioregistry/external/align.py -> build/lib/bioregistry/external -copying src/bioregistry/external/__init__.py -> build/lib/bioregistry/external -copying src/bioregistry/external/alignment_utils.py -> build/lib/bioregistry/external creating build/lib/bioregistry/schema -copying src/bioregistry/schema/constants.py -> build/lib/bioregistry/schema +copying src/bioregistry/schema/struct.py -> build/lib/bioregistry/schema copying src/bioregistry/schema/__init__.py -> build/lib/bioregistry/schema copying src/bioregistry/schema/utils.py -> build/lib/bioregistry/schema -copying src/bioregistry/schema/struct.py -> build/lib/bioregistry/schema -creating build/lib/bioregistry/health -copying src/bioregistry/health/check_providers.py -> build/lib/bioregistry/health -copying src/bioregistry/health/check_homepages.py -> build/lib/bioregistry/health -copying src/bioregistry/health/__main__.py -> build/lib/bioregistry/health -copying src/bioregistry/health/__init__.py -> build/lib/bioregistry/health -copying src/bioregistry/health/cli.py -> build/lib/bioregistry/health +copying src/bioregistry/schema/constants.py -> build/lib/bioregistry/schema +creating build/lib/bioregistry/benchmarks +copying src/bioregistry/benchmarks/curie_parsing.py -> build/lib/bioregistry/benchmarks +copying src/bioregistry/benchmarks/curie_validation.py -> build/lib/bioregistry/benchmarks +copying src/bioregistry/benchmarks/__main__.py -> build/lib/bioregistry/benchmarks +copying src/bioregistry/benchmarks/uri_parsing.py -> build/lib/bioregistry/benchmarks +copying src/bioregistry/benchmarks/__init__.py -> build/lib/bioregistry/benchmarks +copying src/bioregistry/benchmarks/cli.py -> build/lib/bioregistry/benchmarks +creating build/lib/bioregistry/gh +copying src/bioregistry/gh/new_prefix.py -> build/lib/bioregistry/gh +copying src/bioregistry/gh/github_client.py -> build/lib/bioregistry/gh +copying src/bioregistry/gh/__init__.py -> build/lib/bioregistry/gh creating build/lib/bioregistry/app -copying src/bioregistry/app/constants.py -> build/lib/bioregistry/app -copying src/bioregistry/app/test.py -> build/lib/bioregistry/app copying src/bioregistry/app/ui.py -> build/lib/bioregistry/app +copying src/bioregistry/app/api.py -> build/lib/bioregistry/app copying src/bioregistry/app/proxies.py -> build/lib/bioregistry/app -copying src/bioregistry/app/__init__.py -> build/lib/bioregistry/app copying src/bioregistry/app/wsgi.py -> build/lib/bioregistry/app -copying src/bioregistry/app/utils.py -> build/lib/bioregistry/app +copying src/bioregistry/app/test.py -> build/lib/bioregistry/app copying src/bioregistry/app/impl.py -> build/lib/bioregistry/app -copying src/bioregistry/app/api.py -> build/lib/bioregistry/app +copying src/bioregistry/app/__init__.py -> build/lib/bioregistry/app +copying src/bioregistry/app/utils.py -> build/lib/bioregistry/app copying src/bioregistry/app/cli.py -> build/lib/bioregistry/app +copying src/bioregistry/app/constants.py -> build/lib/bioregistry/app +creating build/lib/bioregistry/analysis +copying src/bioregistry/analysis/paper_ranking.py -> build/lib/bioregistry/analysis +copying src/bioregistry/analysis/__init__.py -> build/lib/bioregistry/analysis +copying src/bioregistry/analysis/bioregistry_diff.py -> build/lib/bioregistry/analysis creating build/lib/bioregistry/export +copying src/bioregistry/export/prefixcc.py -> build/lib/bioregistry/export copying src/bioregistry/export/rdf_export.py -> build/lib/bioregistry/export +copying src/bioregistry/export/tables_export.py -> build/lib/bioregistry/export +copying src/bioregistry/export/prefix_maps.py -> build/lib/bioregistry/export copying src/bioregistry/export/tsv_export.py -> build/lib/bioregistry/export -copying src/bioregistry/export/sssom_export.py -> build/lib/bioregistry/export -copying src/bioregistry/export/__main__.py -> build/lib/bioregistry/export -copying src/bioregistry/export/__init__.py -> build/lib/bioregistry/export copying src/bioregistry/export/yaml_export.py -> build/lib/bioregistry/export -copying src/bioregistry/export/schema_export.py -> build/lib/bioregistry/export +copying src/bioregistry/export/__main__.py -> build/lib/bioregistry/export copying src/bioregistry/export/warnings_export.py -> build/lib/bioregistry/export -copying src/bioregistry/export/prefix_maps.py -> build/lib/bioregistry/export -copying src/bioregistry/export/prefixcc.py -> build/lib/bioregistry/export +copying src/bioregistry/export/__init__.py -> build/lib/bioregistry/export copying src/bioregistry/export/cli.py -> build/lib/bioregistry/export -copying src/bioregistry/export/tables_export.py -> build/lib/bioregistry/export -creating build/lib/bioregistry/analysis -copying src/bioregistry/analysis/bioregistry_diff.py -> build/lib/bioregistry/analysis -copying src/bioregistry/analysis/__init__.py -> build/lib/bioregistry/analysis -copying src/bioregistry/analysis/paper_ranking.py -> build/lib/bioregistry/analysis -creating build/lib/bioregistry/data -copying src/bioregistry/data/__init__.py -> build/lib/bioregistry/data -creating build/lib/bioregistry/benchmarks -copying src/bioregistry/benchmarks/__main__.py -> build/lib/bioregistry/benchmarks -copying src/bioregistry/benchmarks/uri_parsing.py -> build/lib/bioregistry/benchmarks -copying src/bioregistry/benchmarks/__init__.py -> build/lib/bioregistry/benchmarks -copying src/bioregistry/benchmarks/curie_parsing.py -> build/lib/bioregistry/benchmarks -copying src/bioregistry/benchmarks/curie_validation.py -> build/lib/bioregistry/benchmarks -copying src/bioregistry/benchmarks/cli.py -> build/lib/bioregistry/benchmarks +copying src/bioregistry/export/schema_export.py -> build/lib/bioregistry/export +copying src/bioregistry/export/sssom_export.py -> build/lib/bioregistry/export +creating build/lib/bioregistry/external/edam +copying src/bioregistry/external/edam/__init__.py -> build/lib/bioregistry/external/edam +creating build/lib/bioregistry/external/hl7 +copying src/bioregistry/external/hl7/__init__.py -> build/lib/bioregistry/external/hl7 +creating build/lib/bioregistry/external/prefixcommons +copying src/bioregistry/external/prefixcommons/__init__.py -> build/lib/bioregistry/external/prefixcommons +creating build/lib/bioregistry/external/ontobee +copying src/bioregistry/external/ontobee/__init__.py -> build/lib/bioregistry/external/ontobee +creating build/lib/bioregistry/external/bioportal +copying src/bioregistry/external/bioportal/agroportal.py -> build/lib/bioregistry/external/bioportal +copying src/bioregistry/external/bioportal/bioportal.py -> build/lib/bioregistry/external/bioportal +copying src/bioregistry/external/bioportal/__init__.py -> build/lib/bioregistry/external/bioportal +copying src/bioregistry/external/bioportal/ecoportal.py -> build/lib/bioregistry/external/bioportal +creating build/lib/bioregistry/external/pathguide +copying src/bioregistry/external/pathguide/__init__.py -> build/lib/bioregistry/external/pathguide +creating build/lib/bioregistry/external/rrid +copying src/bioregistry/external/rrid/__init__.py -> build/lib/bioregistry/external/rrid creating build/lib/bioregistry/external/re3data copying src/bioregistry/external/re3data/__init__.py -> build/lib/bioregistry/external/re3data -creating build/lib/bioregistry/external/miriam -copying src/bioregistry/external/miriam/__init__.py -> build/lib/bioregistry/external/miriam +creating build/lib/bioregistry/external/cropoct +copying src/bioregistry/external/cropoct/__init__.py -> build/lib/bioregistry/external/cropoct creating build/lib/bioregistry/external/togoid copying src/bioregistry/external/togoid/__init__.py -> build/lib/bioregistry/external/togoid -creating build/lib/bioregistry/external/zazuko -copying src/bioregistry/external/zazuko/__init__.py -> build/lib/bioregistry/external/zazuko -creating build/lib/bioregistry/external/pathguide -copying src/bioregistry/external/pathguide/__init__.py -> build/lib/bioregistry/external/pathguide -creating build/lib/bioregistry/external/biocontext -copying src/bioregistry/external/biocontext/__init__.py -> build/lib/bioregistry/external/biocontext +creating build/lib/bioregistry/external/uniprot +copying src/bioregistry/external/uniprot/__init__.py -> build/lib/bioregistry/external/uniprot +creating build/lib/bioregistry/external/cheminf +copying src/bioregistry/external/cheminf/__init__.py -> build/lib/bioregistry/external/cheminf +creating build/lib/bioregistry/external/integbio +copying src/bioregistry/external/integbio/__init__.py -> build/lib/bioregistry/external/integbio +creating build/lib/bioregistry/external/obofoundry +copying src/bioregistry/external/obofoundry/__init__.py -> build/lib/bioregistry/external/obofoundry creating build/lib/bioregistry/external/bartoc copying src/bioregistry/external/bartoc/__init__.py -> build/lib/bioregistry/external/bartoc +creating build/lib/bioregistry/external/biolink +copying src/bioregistry/external/biolink/__init__.py -> build/lib/bioregistry/external/biolink +creating build/lib/bioregistry/external/ncbi +copying src/bioregistry/external/ncbi/__init__.py -> build/lib/bioregistry/external/ncbi +creating build/lib/bioregistry/external/lov +copying src/bioregistry/external/lov/__init__.py -> build/lib/bioregistry/external/lov +creating build/lib/bioregistry/external/wikidata +copying src/bioregistry/external/wikidata/__init__.py -> build/lib/bioregistry/external/wikidata creating build/lib/bioregistry/external/go copying src/bioregistry/external/go/__init__.py -> build/lib/bioregistry/external/go +creating build/lib/bioregistry/external/biocontext +copying src/bioregistry/external/biocontext/__init__.py -> build/lib/bioregistry/external/biocontext creating build/lib/bioregistry/external/aberowl copying src/bioregistry/external/aberowl/__init__.py -> build/lib/bioregistry/external/aberowl -creating build/lib/bioregistry/external/fairsharing -copying src/bioregistry/external/fairsharing/__init__.py -> build/lib/bioregistry/external/fairsharing -creating build/lib/bioregistry/external/integbio -copying src/bioregistry/external/integbio/__init__.py -> build/lib/bioregistry/external/integbio -creating build/lib/bioregistry/external/wikidata -copying src/bioregistry/external/wikidata/__init__.py -> build/lib/bioregistry/external/wikidata -creating build/lib/bioregistry/external/lov -copying src/bioregistry/external/lov/__init__.py -> build/lib/bioregistry/external/lov -creating build/lib/bioregistry/external/ncbi -copying src/bioregistry/external/ncbi/__init__.py -> build/lib/bioregistry/external/ncbi -creating build/lib/bioregistry/external/biolink -copying src/bioregistry/external/biolink/__init__.py -> build/lib/bioregistry/external/biolink -creating build/lib/bioregistry/external/hl7 -copying src/bioregistry/external/hl7/__init__.py -> build/lib/bioregistry/external/hl7 -creating build/lib/bioregistry/external/cellosaurus -copying src/bioregistry/external/cellosaurus/__init__.py -> build/lib/bioregistry/external/cellosaurus -creating build/lib/bioregistry/external/prefixcommons -copying src/bioregistry/external/prefixcommons/__init__.py -> build/lib/bioregistry/external/prefixcommons -creating build/lib/bioregistry/external/cropoct -copying src/bioregistry/external/cropoct/__init__.py -> build/lib/bioregistry/external/cropoct -creating build/lib/bioregistry/external/obofoundry -copying src/bioregistry/external/obofoundry/__init__.py -> build/lib/bioregistry/external/obofoundry -creating build/lib/bioregistry/external/edam -copying src/bioregistry/external/edam/__init__.py -> build/lib/bioregistry/external/edam -creating build/lib/bioregistry/external/bioportal -copying src/bioregistry/external/bioportal/agroportal.py -> build/lib/bioregistry/external/bioportal -copying src/bioregistry/external/bioportal/ecoportal.py -> build/lib/bioregistry/external/bioportal -copying src/bioregistry/external/bioportal/__init__.py -> build/lib/bioregistry/external/bioportal -copying src/bioregistry/external/bioportal/bioportal.py -> build/lib/bioregistry/external/bioportal -creating build/lib/bioregistry/external/ontobee -copying src/bioregistry/external/ontobee/__init__.py -> build/lib/bioregistry/external/ontobee creating build/lib/bioregistry/external/n2t copying src/bioregistry/external/n2t/__init__.py -> build/lib/bioregistry/external/n2t -creating build/lib/bioregistry/external/uniprot -copying src/bioregistry/external/uniprot/__init__.py -> build/lib/bioregistry/external/uniprot -creating build/lib/bioregistry/external/rrid -copying src/bioregistry/external/rrid/__init__.py -> build/lib/bioregistry/external/rrid +creating build/lib/bioregistry/external/zazuko +copying src/bioregistry/external/zazuko/__init__.py -> build/lib/bioregistry/external/zazuko +creating build/lib/bioregistry/external/fairsharing +copying src/bioregistry/external/fairsharing/__init__.py -> build/lib/bioregistry/external/fairsharing +creating build/lib/bioregistry/external/miriam +copying src/bioregistry/external/miriam/__init__.py -> build/lib/bioregistry/external/miriam creating build/lib/bioregistry/external/ols copying src/bioregistry/external/ols/__init__.py -> build/lib/bioregistry/external/ols -creating build/lib/bioregistry/external/cheminf -copying src/bioregistry/external/cheminf/__init__.py -> build/lib/bioregistry/external/cheminf +creating build/lib/bioregistry/external/cellosaurus +copying src/bioregistry/external/cellosaurus/__init__.py -> build/lib/bioregistry/external/cellosaurus running egg_info creating src/bioregistry.egg-info writing src/bioregistry.egg-info/PKG-INFO @@ -1269,6 +1305,12 @@ !! check.warn(importable) copying src/bioregistry/py.typed -> build/lib/bioregistry +copying src/bioregistry/data/README.md -> build/lib/bioregistry/data +copying src/bioregistry/data/bioregistry.json -> build/lib/bioregistry/data +copying src/bioregistry/data/collections.json -> build/lib/bioregistry/data +copying src/bioregistry/data/contexts.json -> build/lib/bioregistry/data +copying src/bioregistry/data/metaregistry.json -> build/lib/bioregistry/data +copying src/bioregistry/data/mismatch.json -> build/lib/bioregistry/data copying src/bioregistry/curation/curated_papers.csv -> build/lib/bioregistry/curation copying src/bioregistry/schema/schema.json -> build/lib/bioregistry/schema creating build/lib/bioregistry/app/static @@ -1308,293 +1350,287 @@ copying src/bioregistry/app/templates/resolve_errors/missing_prefix.html -> build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/app/templates/resolve_errors/missing_providers.html -> build/lib/bioregistry/app/templates/resolve_errors copying src/bioregistry/analysis/paper_ranking_requirements.txt -> build/lib/bioregistry/analysis -copying src/bioregistry/data/README.md -> build/lib/bioregistry/data -copying src/bioregistry/data/bioregistry.json -> build/lib/bioregistry/data -copying src/bioregistry/data/collections.json -> build/lib/bioregistry/data -copying src/bioregistry/data/contexts.json -> build/lib/bioregistry/data -copying src/bioregistry/data/metaregistry.json -> build/lib/bioregistry/data -copying src/bioregistry/data/mismatch.json -> build/lib/bioregistry/data +copying src/bioregistry/external/edam/processed.json -> build/lib/bioregistry/external/edam +copying src/bioregistry/external/hl7/OID_Report.csv -> build/lib/bioregistry/external/hl7 +copying src/bioregistry/external/prefixcommons/processed.json -> build/lib/bioregistry/external/prefixcommons +copying src/bioregistry/external/ontobee/processed.json -> build/lib/bioregistry/external/ontobee +copying src/bioregistry/external/bioportal/agroportal.json -> build/lib/bioregistry/external/bioportal +copying src/bioregistry/external/bioportal/bioportal.json -> build/lib/bioregistry/external/bioportal +copying src/bioregistry/external/bioportal/ecoportal.json -> build/lib/bioregistry/external/bioportal copying src/bioregistry/external/re3data/processed.json -> build/lib/bioregistry/external/re3data -copying src/bioregistry/external/miriam/processed.json -> build/lib/bioregistry/external/miriam +copying src/bioregistry/external/cropoct/processed.json -> build/lib/bioregistry/external/cropoct copying src/bioregistry/external/togoid/processed.json -> build/lib/bioregistry/external/togoid -copying src/bioregistry/external/zazuko/processed.json -> build/lib/bioregistry/external/zazuko -copying src/bioregistry/external/biocontext/processed.json -> build/lib/bioregistry/external/biocontext +copying src/bioregistry/external/uniprot/processed.json -> build/lib/bioregistry/external/uniprot +copying src/bioregistry/external/cheminf/processed.json -> build/lib/bioregistry/external/cheminf +copying src/bioregistry/external/integbio/processed.json -> build/lib/bioregistry/external/integbio +copying src/bioregistry/external/obofoundry/processed.json -> build/lib/bioregistry/external/obofoundry copying src/bioregistry/external/bartoc/processed.json -> build/lib/bioregistry/external/bartoc +copying src/bioregistry/external/biolink/processed.json -> build/lib/bioregistry/external/biolink +copying src/bioregistry/external/biolink/processing_biolink.json -> build/lib/bioregistry/external/biolink +copying src/bioregistry/external/ncbi/processed.json -> build/lib/bioregistry/external/ncbi +copying src/bioregistry/external/lov/processed.json -> build/lib/bioregistry/external/lov +copying src/bioregistry/external/wikidata/processed.json -> build/lib/bioregistry/external/wikidata copying src/bioregistry/external/go/processed.json -> build/lib/bioregistry/external/go copying src/bioregistry/external/go/processing_go.json -> build/lib/bioregistry/external/go +copying src/bioregistry/external/biocontext/processed.json -> build/lib/bioregistry/external/biocontext copying src/bioregistry/external/aberowl/processed.json -> build/lib/bioregistry/external/aberowl -copying src/bioregistry/external/fairsharing/processed.json -> build/lib/bioregistry/external/fairsharing -copying src/bioregistry/external/integbio/processed.json -> build/lib/bioregistry/external/integbio -copying src/bioregistry/external/wikidata/processed.json -> build/lib/bioregistry/external/wikidata -copying src/bioregistry/external/lov/processed.json -> build/lib/bioregistry/external/lov -copying src/bioregistry/external/ncbi/processed.json -> build/lib/bioregistry/external/ncbi -copying src/bioregistry/external/biolink/processed.json -> build/lib/bioregistry/external/biolink -copying src/bioregistry/external/biolink/processing_biolink.json -> build/lib/bioregistry/external/biolink -copying src/bioregistry/external/hl7/OID_Report.csv -> build/lib/bioregistry/external/hl7 -copying src/bioregistry/external/cellosaurus/processed.json -> build/lib/bioregistry/external/cellosaurus -copying src/bioregistry/external/prefixcommons/processed.json -> build/lib/bioregistry/external/prefixcommons -copying src/bioregistry/external/cropoct/processed.json -> build/lib/bioregistry/external/cropoct -copying src/bioregistry/external/obofoundry/processed.json -> build/lib/bioregistry/external/obofoundry -copying src/bioregistry/external/edam/processed.json -> build/lib/bioregistry/external/edam -copying src/bioregistry/external/bioportal/agroportal.json -> build/lib/bioregistry/external/bioportal -copying src/bioregistry/external/bioportal/bioportal.json -> build/lib/bioregistry/external/bioportal -copying src/bioregistry/external/bioportal/ecoportal.json -> build/lib/bioregistry/external/bioportal -copying src/bioregistry/external/ontobee/processed.json -> build/lib/bioregistry/external/ontobee copying src/bioregistry/external/n2t/processed.json -> build/lib/bioregistry/external/n2t -copying src/bioregistry/external/uniprot/processed.json -> build/lib/bioregistry/external/uniprot +copying src/bioregistry/external/zazuko/processed.json -> build/lib/bioregistry/external/zazuko +copying src/bioregistry/external/fairsharing/processed.json -> build/lib/bioregistry/external/fairsharing +copying src/bioregistry/external/miriam/processed.json -> build/lib/bioregistry/external/miriam copying src/bioregistry/external/ols/processed.json -> build/lib/bioregistry/external/ols copying src/bioregistry/external/ols/processing_ols.json -> build/lib/bioregistry/external/ols -copying src/bioregistry/external/cheminf/processed.json -> build/lib/bioregistry/external/cheminf +copying src/bioregistry/external/cellosaurus/processed.json -> build/lib/bioregistry/external/cellosaurus installing to build/bdist.linux-i686/wheel running install running install_lib creating build/bdist.linux-i686/wheel creating build/bdist.linux-i686/wheel/bioregistry +creating build/bdist.linux-i686/wheel/bioregistry/health +copying build/lib/bioregistry/health/check_homepages.py -> build/bdist.linux-i686/wheel/./bioregistry/health +copying build/lib/bioregistry/health/__main__.py -> build/bdist.linux-i686/wheel/./bioregistry/health +copying build/lib/bioregistry/health/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/health +copying build/lib/bioregistry/health/check_providers.py -> build/bdist.linux-i686/wheel/./bioregistry/health +copying build/lib/bioregistry/health/cli.py -> build/bdist.linux-i686/wheel/./bioregistry/health +copying build/lib/bioregistry/py.typed -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/metaresource_api.py -> build/bdist.linux-i686/wheel/./bioregistry +copying build/lib/bioregistry/summary.py -> build/bdist.linux-i686/wheel/./bioregistry +creating build/bdist.linux-i686/wheel/bioregistry/data +copying build/lib/bioregistry/data/README.md -> build/bdist.linux-i686/wheel/./bioregistry/data +copying build/lib/bioregistry/data/metaregistry.json -> build/bdist.linux-i686/wheel/./bioregistry/data +copying build/lib/bioregistry/data/mismatch.json -> build/bdist.linux-i686/wheel/./bioregistry/data +copying build/lib/bioregistry/data/collections.json -> build/bdist.linux-i686/wheel/./bioregistry/data +copying build/lib/bioregistry/data/bioregistry.json -> build/bdist.linux-i686/wheel/./bioregistry/data +copying build/lib/bioregistry/data/contexts.json -> build/bdist.linux-i686/wheel/./bioregistry/data +copying build/lib/bioregistry/data/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/data +copying build/lib/bioregistry/collection_api.py -> build/bdist.linux-i686/wheel/./bioregistry +copying build/lib/bioregistry/record_accumulator.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/license_standardizer.py -> build/bdist.linux-i686/wheel/./bioregistry -creating build/bdist.linux-i686/wheel/bioregistry/gh -copying build/lib/bioregistry/gh/github_client.py -> build/bdist.linux-i686/wheel/./bioregistry/gh -copying build/lib/bioregistry/gh/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/gh -copying build/lib/bioregistry/gh/new_prefix.py -> build/bdist.linux-i686/wheel/./bioregistry/gh -creating build/bdist.linux-i686/wheel/bioregistry/curation -copying build/lib/bioregistry/curation/add_examples.py -> build/bdist.linux-i686/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/clean_publications.py -> build/bdist.linux-i686/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/cleanup_authors.py -> build/bdist.linux-i686/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/import_pc_semiautomatic.py -> build/bdist.linux-i686/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/map_bartoc_via_wikidata.py -> build/bdist.linux-i686/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/fix_obo_purls.py -> build/bdist.linux-i686/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/add_examples_from_ols.py -> build/bdist.linux-i686/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/suggest_uniprot_providers.py -> build/bdist.linux-i686/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/clean_name_suffixes.py -> build/bdist.linux-i686/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/add_descriptions_from_gs.py -> build/bdist.linux-i686/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/add_examples_from_javert.py -> build/bdist.linux-i686/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/deprecation_diff.py -> build/bdist.linux-i686/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/add_ontology_regexes.py -> build/bdist.linux-i686/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/clean_licenses.py -> build/bdist.linux-i686/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/curated_papers.csv -> build/bdist.linux-i686/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/map_re3data_via_fairsharing.py -> build/bdist.linux-i686/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/rename_metaprefix.py -> build/bdist.linux-i686/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/review_pc.py -> build/bdist.linux-i686/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/make_health_report_curation_sheet.py -> build/bdist.linux-i686/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/suggest_author_curation.py -> build/bdist.linux-i686/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/enrich_publications.py -> build/bdist.linux-i686/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/make_description_curation_sheet.py -> build/bdist.linux-i686/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/bulk_import.py -> build/bdist.linux-i686/wheel/./bioregistry/curation -copying build/lib/bioregistry/curation/add_co_providers.py -> build/bdist.linux-i686/wheel/./bioregistry/curation -copying build/lib/bioregistry/lint.py -> build/bdist.linux-i686/wheel/./bioregistry creating build/bdist.linux-i686/wheel/bioregistry/external +creating build/bdist.linux-i686/wheel/bioregistry/external/edam +copying build/lib/bioregistry/external/edam/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/edam +copying build/lib/bioregistry/external/edam/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/edam +creating build/bdist.linux-i686/wheel/bioregistry/external/hl7 +copying build/lib/bioregistry/external/hl7/OID_Report.csv -> build/bdist.linux-i686/wheel/./bioregistry/external/hl7 +copying build/lib/bioregistry/external/hl7/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/hl7 +creating build/bdist.linux-i686/wheel/bioregistry/external/prefixcommons +copying build/lib/bioregistry/external/prefixcommons/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/prefixcommons +copying build/lib/bioregistry/external/prefixcommons/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/prefixcommons +copying build/lib/bioregistry/external/align.py -> build/bdist.linux-i686/wheel/./bioregistry/external +creating build/bdist.linux-i686/wheel/bioregistry/external/ontobee +copying build/lib/bioregistry/external/ontobee/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/ontobee +copying build/lib/bioregistry/external/ontobee/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/ontobee +creating build/bdist.linux-i686/wheel/bioregistry/external/bioportal +copying build/lib/bioregistry/external/bioportal/agroportal.py -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal +copying build/lib/bioregistry/external/bioportal/bioportal.py -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal +copying build/lib/bioregistry/external/bioportal/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal +copying build/lib/bioregistry/external/bioportal/ecoportal.json -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal +copying build/lib/bioregistry/external/bioportal/agroportal.json -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal +copying build/lib/bioregistry/external/bioportal/bioportal.json -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal +copying build/lib/bioregistry/external/bioportal/ecoportal.py -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal +creating build/bdist.linux-i686/wheel/bioregistry/external/pathguide +copying build/lib/bioregistry/external/pathguide/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/pathguide +creating build/bdist.linux-i686/wheel/bioregistry/external/rrid +copying build/lib/bioregistry/external/rrid/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/rrid creating build/bdist.linux-i686/wheel/bioregistry/external/re3data -copying build/lib/bioregistry/external/re3data/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/re3data copying build/lib/bioregistry/external/re3data/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/re3data -creating build/bdist.linux-i686/wheel/bioregistry/external/miriam -copying build/lib/bioregistry/external/miriam/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/miriam -copying build/lib/bioregistry/external/miriam/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/miriam +copying build/lib/bioregistry/external/re3data/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/re3data +creating build/bdist.linux-i686/wheel/bioregistry/external/cropoct +copying build/lib/bioregistry/external/cropoct/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/cropoct +copying build/lib/bioregistry/external/cropoct/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/cropoct creating build/bdist.linux-i686/wheel/bioregistry/external/togoid -copying build/lib/bioregistry/external/togoid/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/togoid copying build/lib/bioregistry/external/togoid/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/togoid -creating build/bdist.linux-i686/wheel/bioregistry/external/zazuko -copying build/lib/bioregistry/external/zazuko/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/zazuko -copying build/lib/bioregistry/external/zazuko/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/zazuko -copying build/lib/bioregistry/external/align.py -> build/bdist.linux-i686/wheel/./bioregistry/external -creating build/bdist.linux-i686/wheel/bioregistry/external/pathguide -copying build/lib/bioregistry/external/pathguide/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/pathguide -creating build/bdist.linux-i686/wheel/bioregistry/external/biocontext -copying build/lib/bioregistry/external/biocontext/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/biocontext -copying build/lib/bioregistry/external/biocontext/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/biocontext +copying build/lib/bioregistry/external/togoid/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/togoid +creating build/bdist.linux-i686/wheel/bioregistry/external/uniprot +copying build/lib/bioregistry/external/uniprot/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/uniprot +copying build/lib/bioregistry/external/uniprot/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/uniprot +creating build/bdist.linux-i686/wheel/bioregistry/external/cheminf +copying build/lib/bioregistry/external/cheminf/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/cheminf +copying build/lib/bioregistry/external/cheminf/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/cheminf +creating build/bdist.linux-i686/wheel/bioregistry/external/integbio +copying build/lib/bioregistry/external/integbio/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/integbio +copying build/lib/bioregistry/external/integbio/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/integbio +copying build/lib/bioregistry/external/alignment_utils.py -> build/bdist.linux-i686/wheel/./bioregistry/external +creating build/bdist.linux-i686/wheel/bioregistry/external/obofoundry +copying build/lib/bioregistry/external/obofoundry/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/obofoundry +copying build/lib/bioregistry/external/obofoundry/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/obofoundry creating build/bdist.linux-i686/wheel/bioregistry/external/bartoc -copying build/lib/bioregistry/external/bartoc/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/bartoc copying build/lib/bioregistry/external/bartoc/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/bartoc +copying build/lib/bioregistry/external/bartoc/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/bartoc +creating build/bdist.linux-i686/wheel/bioregistry/external/biolink +copying build/lib/bioregistry/external/biolink/processing_biolink.json -> build/bdist.linux-i686/wheel/./bioregistry/external/biolink +copying build/lib/bioregistry/external/biolink/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/biolink +copying build/lib/bioregistry/external/biolink/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/biolink +creating build/bdist.linux-i686/wheel/bioregistry/external/ncbi +copying build/lib/bioregistry/external/ncbi/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/ncbi +copying build/lib/bioregistry/external/ncbi/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/ncbi +creating build/bdist.linux-i686/wheel/bioregistry/external/lov +copying build/lib/bioregistry/external/lov/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/lov +copying build/lib/bioregistry/external/lov/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/lov +creating build/bdist.linux-i686/wheel/bioregistry/external/wikidata +copying build/lib/bioregistry/external/wikidata/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/wikidata +copying build/lib/bioregistry/external/wikidata/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/wikidata creating build/bdist.linux-i686/wheel/bioregistry/external/go +copying build/lib/bioregistry/external/go/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/go copying build/lib/bioregistry/external/go/processing_go.json -> build/bdist.linux-i686/wheel/./bioregistry/external/go copying build/lib/bioregistry/external/go/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/go -copying build/lib/bioregistry/external/go/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/go +creating build/bdist.linux-i686/wheel/bioregistry/external/biocontext +copying build/lib/bioregistry/external/biocontext/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/biocontext +copying build/lib/bioregistry/external/biocontext/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/biocontext creating build/bdist.linux-i686/wheel/bioregistry/external/aberowl -copying build/lib/bioregistry/external/aberowl/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/aberowl copying build/lib/bioregistry/external/aberowl/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/aberowl +copying build/lib/bioregistry/external/aberowl/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/aberowl +creating build/bdist.linux-i686/wheel/bioregistry/external/n2t +copying build/lib/bioregistry/external/n2t/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/n2t +copying build/lib/bioregistry/external/n2t/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/n2t +creating build/bdist.linux-i686/wheel/bioregistry/external/zazuko +copying build/lib/bioregistry/external/zazuko/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/zazuko +copying build/lib/bioregistry/external/zazuko/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/zazuko creating build/bdist.linux-i686/wheel/bioregistry/external/fairsharing -copying build/lib/bioregistry/external/fairsharing/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/fairsharing copying build/lib/bioregistry/external/fairsharing/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/fairsharing -creating build/bdist.linux-i686/wheel/bioregistry/external/integbio -copying build/lib/bioregistry/external/integbio/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/integbio -copying build/lib/bioregistry/external/integbio/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/integbio -creating build/bdist.linux-i686/wheel/bioregistry/external/wikidata -copying build/lib/bioregistry/external/wikidata/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/wikidata -copying build/lib/bioregistry/external/wikidata/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/wikidata -creating build/bdist.linux-i686/wheel/bioregistry/external/lov -copying build/lib/bioregistry/external/lov/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/lov -copying build/lib/bioregistry/external/lov/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/lov -creating build/bdist.linux-i686/wheel/bioregistry/external/ncbi -copying build/lib/bioregistry/external/ncbi/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/ncbi -copying build/lib/bioregistry/external/ncbi/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/ncbi -creating build/bdist.linux-i686/wheel/bioregistry/external/biolink -copying build/lib/bioregistry/external/biolink/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/biolink -copying build/lib/bioregistry/external/biolink/processing_biolink.json -> build/bdist.linux-i686/wheel/./bioregistry/external/biolink -copying build/lib/bioregistry/external/biolink/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/biolink +copying build/lib/bioregistry/external/fairsharing/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/fairsharing copying build/lib/bioregistry/external/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external -creating build/bdist.linux-i686/wheel/bioregistry/external/hl7 -copying build/lib/bioregistry/external/hl7/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/hl7 -copying build/lib/bioregistry/external/hl7/OID_Report.csv -> build/bdist.linux-i686/wheel/./bioregistry/external/hl7 -creating build/bdist.linux-i686/wheel/bioregistry/external/cellosaurus -copying build/lib/bioregistry/external/cellosaurus/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/cellosaurus -copying build/lib/bioregistry/external/cellosaurus/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/cellosaurus -creating build/bdist.linux-i686/wheel/bioregistry/external/prefixcommons -copying build/lib/bioregistry/external/prefixcommons/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/prefixcommons -copying build/lib/bioregistry/external/prefixcommons/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/prefixcommons -creating build/bdist.linux-i686/wheel/bioregistry/external/cropoct -copying build/lib/bioregistry/external/cropoct/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/cropoct -copying build/lib/bioregistry/external/cropoct/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/cropoct -creating build/bdist.linux-i686/wheel/bioregistry/external/obofoundry -copying build/lib/bioregistry/external/obofoundry/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/obofoundry -copying build/lib/bioregistry/external/obofoundry/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/obofoundry -copying build/lib/bioregistry/external/alignment_utils.py -> build/bdist.linux-i686/wheel/./bioregistry/external -creating build/bdist.linux-i686/wheel/bioregistry/external/edam -copying build/lib/bioregistry/external/edam/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/edam -copying build/lib/bioregistry/external/edam/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/edam -creating build/bdist.linux-i686/wheel/bioregistry/external/bioportal -copying build/lib/bioregistry/external/bioportal/agroportal.py -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal -copying build/lib/bioregistry/external/bioportal/ecoportal.py -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal -copying build/lib/bioregistry/external/bioportal/agroportal.json -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal -copying build/lib/bioregistry/external/bioportal/bioportal.json -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal -copying build/lib/bioregistry/external/bioportal/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal -copying build/lib/bioregistry/external/bioportal/bioportal.py -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal -copying build/lib/bioregistry/external/bioportal/ecoportal.json -> build/bdist.linux-i686/wheel/./bioregistry/external/bioportal -creating build/bdist.linux-i686/wheel/bioregistry/external/ontobee -copying build/lib/bioregistry/external/ontobee/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/ontobee -copying build/lib/bioregistry/external/ontobee/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/ontobee -creating build/bdist.linux-i686/wheel/bioregistry/external/n2t -copying build/lib/bioregistry/external/n2t/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/n2t -copying build/lib/bioregistry/external/n2t/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/n2t -creating build/bdist.linux-i686/wheel/bioregistry/external/uniprot -copying build/lib/bioregistry/external/uniprot/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/uniprot -copying build/lib/bioregistry/external/uniprot/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/uniprot -creating build/bdist.linux-i686/wheel/bioregistry/external/rrid -copying build/lib/bioregistry/external/rrid/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/rrid +creating build/bdist.linux-i686/wheel/bioregistry/external/miriam +copying build/lib/bioregistry/external/miriam/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/miriam +copying build/lib/bioregistry/external/miriam/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/miriam creating build/bdist.linux-i686/wheel/bioregistry/external/ols +copying build/lib/bioregistry/external/ols/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/ols copying build/lib/bioregistry/external/ols/processing_ols.json -> build/bdist.linux-i686/wheel/./bioregistry/external/ols copying build/lib/bioregistry/external/ols/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/ols -copying build/lib/bioregistry/external/ols/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/ols -creating build/bdist.linux-i686/wheel/bioregistry/external/cheminf -copying build/lib/bioregistry/external/cheminf/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/cheminf -copying build/lib/bioregistry/external/cheminf/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/cheminf -copying build/lib/bioregistry/resource_manager.py -> build/bdist.linux-i686/wheel/./bioregistry -copying build/lib/bioregistry/version.py -> build/bdist.linux-i686/wheel/./bioregistry -copying build/lib/bioregistry/constants.py -> build/bdist.linux-i686/wheel/./bioregistry -copying build/lib/bioregistry/compare.py -> build/bdist.linux-i686/wheel/./bioregistry -copying build/lib/bioregistry/pandas.py -> build/bdist.linux-i686/wheel/./bioregistry -copying build/lib/bioregistry/resolve_identifier.py -> build/bdist.linux-i686/wheel/./bioregistry +creating build/bdist.linux-i686/wheel/bioregistry/external/cellosaurus +copying build/lib/bioregistry/external/cellosaurus/processed.json -> build/bdist.linux-i686/wheel/./bioregistry/external/cellosaurus +copying build/lib/bioregistry/external/cellosaurus/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/external/cellosaurus +creating build/bdist.linux-i686/wheel/bioregistry/curation +copying build/lib/bioregistry/curation/fix_obo_purls.py -> build/bdist.linux-i686/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/rename_metaprefix.py -> build/bdist.linux-i686/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/make_health_report_curation_sheet.py -> build/bdist.linux-i686/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/add_examples.py -> build/bdist.linux-i686/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/add_co_providers.py -> build/bdist.linux-i686/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/add_descriptions_from_gs.py -> build/bdist.linux-i686/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/make_description_curation_sheet.py -> build/bdist.linux-i686/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/map_bartoc_via_wikidata.py -> build/bdist.linux-i686/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/import_pc_semiautomatic.py -> build/bdist.linux-i686/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/deprecation_diff.py -> build/bdist.linux-i686/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/add_examples_from_javert.py -> build/bdist.linux-i686/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/review_pc.py -> build/bdist.linux-i686/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/cleanup_authors.py -> build/bdist.linux-i686/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/add_ontology_regexes.py -> build/bdist.linux-i686/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/clean_licenses.py -> build/bdist.linux-i686/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/map_re3data_via_fairsharing.py -> build/bdist.linux-i686/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/bulk_import.py -> build/bdist.linux-i686/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/clean_publications.py -> build/bdist.linux-i686/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/add_examples_from_ols.py -> build/bdist.linux-i686/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/clean_name_suffixes.py -> build/bdist.linux-i686/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/suggest_uniprot_providers.py -> build/bdist.linux-i686/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/suggest_author_curation.py -> build/bdist.linux-i686/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/curated_papers.csv -> build/bdist.linux-i686/wheel/./bioregistry/curation +copying build/lib/bioregistry/curation/enrich_publications.py -> build/bdist.linux-i686/wheel/./bioregistry/curation creating build/bdist.linux-i686/wheel/bioregistry/schema -copying build/lib/bioregistry/schema/constants.py -> build/bdist.linux-i686/wheel/./bioregistry/schema -copying build/lib/bioregistry/schema/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/schema copying build/lib/bioregistry/schema/schema.json -> build/bdist.linux-i686/wheel/./bioregistry/schema -copying build/lib/bioregistry/schema/utils.py -> build/bdist.linux-i686/wheel/./bioregistry/schema copying build/lib/bioregistry/schema/struct.py -> build/bdist.linux-i686/wheel/./bioregistry/schema -copying build/lib/bioregistry/bibliometrics.py -> build/bdist.linux-i686/wheel/./bioregistry +copying build/lib/bioregistry/schema/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/schema +copying build/lib/bioregistry/schema/utils.py -> build/bdist.linux-i686/wheel/./bioregistry/schema +copying build/lib/bioregistry/schema/constants.py -> build/bdist.linux-i686/wheel/./bioregistry/schema +copying build/lib/bioregistry/pandas.py -> build/bdist.linux-i686/wheel/./bioregistry +copying build/lib/bioregistry/parse_version_iri.py -> build/bdist.linux-i686/wheel/./bioregistry +creating build/bdist.linux-i686/wheel/bioregistry/benchmarks +copying build/lib/bioregistry/benchmarks/curie_parsing.py -> build/bdist.linux-i686/wheel/./bioregistry/benchmarks +copying build/lib/bioregistry/benchmarks/curie_validation.py -> build/bdist.linux-i686/wheel/./bioregistry/benchmarks +copying build/lib/bioregistry/benchmarks/__main__.py -> build/bdist.linux-i686/wheel/./bioregistry/benchmarks +copying build/lib/bioregistry/benchmarks/uri_parsing.py -> build/bdist.linux-i686/wheel/./bioregistry/benchmarks +copying build/lib/bioregistry/benchmarks/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/benchmarks +copying build/lib/bioregistry/benchmarks/cli.py -> build/bdist.linux-i686/wheel/./bioregistry/benchmarks +copying build/lib/bioregistry/version.py -> build/bdist.linux-i686/wheel/./bioregistry +copying build/lib/bioregistry/upload_ndex.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/__main__.py -> build/bdist.linux-i686/wheel/./bioregistry -copying build/lib/bioregistry/record_accumulator.py -> build/bdist.linux-i686/wheel/./bioregistry -creating build/bdist.linux-i686/wheel/bioregistry/health -copying build/lib/bioregistry/health/check_providers.py -> build/bdist.linux-i686/wheel/./bioregistry/health -copying build/lib/bioregistry/health/check_homepages.py -> build/bdist.linux-i686/wheel/./bioregistry/health -copying build/lib/bioregistry/health/__main__.py -> build/bdist.linux-i686/wheel/./bioregistry/health -copying build/lib/bioregistry/health/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/health -copying build/lib/bioregistry/health/cli.py -> build/bdist.linux-i686/wheel/./bioregistry/health +copying build/lib/bioregistry/parse_iri.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/resolve.py -> build/bdist.linux-i686/wheel/./bioregistry +creating build/bdist.linux-i686/wheel/bioregistry/gh +copying build/lib/bioregistry/gh/new_prefix.py -> build/bdist.linux-i686/wheel/./bioregistry/gh +copying build/lib/bioregistry/gh/github_client.py -> build/bdist.linux-i686/wheel/./bioregistry/gh +copying build/lib/bioregistry/gh/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/gh +copying build/lib/bioregistry/schema_utils.py -> build/bdist.linux-i686/wheel/./bioregistry +copying build/lib/bioregistry/lint.py -> build/bdist.linux-i686/wheel/./bioregistry creating build/bdist.linux-i686/wheel/bioregistry/app +copying build/lib/bioregistry/app/ui.py -> build/bdist.linux-i686/wheel/./bioregistry/app +copying build/lib/bioregistry/app/api.py -> build/bdist.linux-i686/wheel/./bioregistry/app creating build/bdist.linux-i686/wheel/bioregistry/app/templates -copying build/lib/bioregistry/app/templates/collection.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates +creating build/bdist.linux-i686/wheel/bioregistry/app/templates/meta +copying build/lib/bioregistry/app/templates/meta/download.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta +copying build/lib/bioregistry/app/templates/meta/sustainability.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta +copying build/lib/bioregistry/app/templates/meta/schema.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta +copying build/lib/bioregistry/app/templates/meta/access.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta +copying build/lib/bioregistry/app/templates/meta/summary.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta +copying build/lib/bioregistry/app/templates/meta/related.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta +copying build/lib/bioregistry/app/templates/meta/acknowledgements.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta +copying build/lib/bioregistry/app/templates/base.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates +copying build/lib/bioregistry/app/templates/reference.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates +copying build/lib/bioregistry/app/templates/macros.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates copying build/lib/bioregistry/app/templates/collections.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates creating build/bdist.linux-i686/wheel/bioregistry/app/templates/resolve_errors -copying build/lib/bioregistry/app/templates/resolve_errors/disallowed_identifier.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/resolve_errors copying build/lib/bioregistry/app/templates/resolve_errors/invalid_identifier.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/resolve_errors copying build/lib/bioregistry/app/templates/resolve_errors/missing_providers.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/resolve_errors +copying build/lib/bioregistry/app/templates/resolve_errors/disallowed_identifier.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/resolve_errors copying build/lib/bioregistry/app/templates/resolve_errors/missing_prefix.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/resolve_errors +copying build/lib/bioregistry/app/templates/contributors.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates +copying build/lib/bioregistry/app/templates/collection.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates +copying build/lib/bioregistry/app/templates/contexts.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates +copying build/lib/bioregistry/app/templates/context.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates +copying build/lib/bioregistry/app/templates/prose.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates +copying build/lib/bioregistry/app/templates/resources.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates +copying build/lib/bioregistry/app/templates/metaresource.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates +copying build/lib/bioregistry/app/templates/home.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates +copying build/lib/bioregistry/app/templates/contributor.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates +copying build/lib/bioregistry/app/templates/metaresources.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates creating build/bdist.linux-i686/wheel/bioregistry/app/templates/highlights -copying build/lib/bioregistry/app/templates/highlights/relations.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/highlights -copying build/lib/bioregistry/app/templates/highlights/keywords.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/highlights/owners.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/highlights +copying build/lib/bioregistry/app/templates/highlights/keywords.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/highlights +copying build/lib/bioregistry/app/templates/highlights/relations.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/highlights/twitter.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/highlights copying build/lib/bioregistry/app/templates/resource.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates -copying build/lib/bioregistry/app/templates/prose.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates -copying build/lib/bioregistry/app/templates/base.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates -copying build/lib/bioregistry/app/templates/contributor.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates -copying build/lib/bioregistry/app/templates/home.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates -copying build/lib/bioregistry/app/templates/macros.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates -copying build/lib/bioregistry/app/templates/resources.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates -copying build/lib/bioregistry/app/templates/contributors.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates -copying build/lib/bioregistry/app/templates/metaresources.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates -creating build/bdist.linux-i686/wheel/bioregistry/app/templates/meta -copying build/lib/bioregistry/app/templates/meta/related.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta -copying build/lib/bioregistry/app/templates/meta/download.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta -copying build/lib/bioregistry/app/templates/meta/acknowledgements.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta -copying build/lib/bioregistry/app/templates/meta/schema.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta -copying build/lib/bioregistry/app/templates/meta/access.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta -copying build/lib/bioregistry/app/templates/meta/sustainability.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta -copying build/lib/bioregistry/app/templates/meta/summary.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates/meta -copying build/lib/bioregistry/app/templates/context.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates -copying build/lib/bioregistry/app/templates/contexts.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates -copying build/lib/bioregistry/app/templates/metaresource.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates -copying build/lib/bioregistry/app/templates/reference.html -> build/bdist.linux-i686/wheel/./bioregistry/app/templates -copying build/lib/bioregistry/app/constants.py -> build/bdist.linux-i686/wheel/./bioregistry/app -copying build/lib/bioregistry/app/test.py -> build/bdist.linux-i686/wheel/./bioregistry/app -copying build/lib/bioregistry/app/ui.py -> build/bdist.linux-i686/wheel/./bioregistry/app copying build/lib/bioregistry/app/proxies.py -> build/bdist.linux-i686/wheel/./bioregistry/app -copying build/lib/bioregistry/app/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/app copying build/lib/bioregistry/app/wsgi.py -> build/bdist.linux-i686/wheel/./bioregistry/app +copying build/lib/bioregistry/app/test.py -> build/bdist.linux-i686/wheel/./bioregistry/app +copying build/lib/bioregistry/app/impl.py -> build/bdist.linux-i686/wheel/./bioregistry/app +copying build/lib/bioregistry/app/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/app +copying build/lib/bioregistry/app/utils.py -> build/bdist.linux-i686/wheel/./bioregistry/app creating build/bdist.linux-i686/wheel/bioregistry/app/static copying build/lib/bioregistry/app/static/logo.svg -> build/bdist.linux-i686/wheel/./bioregistry/app/static -copying build/lib/bioregistry/app/utils.py -> build/bdist.linux-i686/wheel/./bioregistry/app -copying build/lib/bioregistry/app/impl.py -> build/bdist.linux-i686/wheel/./bioregistry/app -copying build/lib/bioregistry/app/api.py -> build/bdist.linux-i686/wheel/./bioregistry/app copying build/lib/bioregistry/app/cli.py -> build/bdist.linux-i686/wheel/./bioregistry/app -copying build/lib/bioregistry/summary.py -> build/bdist.linux-i686/wheel/./bioregistry -copying build/lib/bioregistry/parse_iri.py -> build/bdist.linux-i686/wheel/./bioregistry -copying build/lib/bioregistry/py.typed -> build/bdist.linux-i686/wheel/./bioregistry +copying build/lib/bioregistry/app/constants.py -> build/bdist.linux-i686/wheel/./bioregistry/app copying build/lib/bioregistry/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry +creating build/bdist.linux-i686/wheel/bioregistry/analysis +copying build/lib/bioregistry/analysis/paper_ranking.py -> build/bdist.linux-i686/wheel/./bioregistry/analysis +copying build/lib/bioregistry/analysis/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/analysis +copying build/lib/bioregistry/analysis/bioregistry_diff.py -> build/bdist.linux-i686/wheel/./bioregistry/analysis +copying build/lib/bioregistry/analysis/paper_ranking_requirements.txt -> build/bdist.linux-i686/wheel/./bioregistry/analysis +copying build/lib/bioregistry/compare.py -> build/bdist.linux-i686/wheel/./bioregistry +copying build/lib/bioregistry/resource_manager.py -> build/bdist.linux-i686/wheel/./bioregistry +copying build/lib/bioregistry/utils.py -> build/bdist.linux-i686/wheel/./bioregistry creating build/bdist.linux-i686/wheel/bioregistry/export +copying build/lib/bioregistry/export/prefixcc.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/rdf_export.py -> build/bdist.linux-i686/wheel/./bioregistry/export +copying build/lib/bioregistry/export/tables_export.py -> build/bdist.linux-i686/wheel/./bioregistry/export +copying build/lib/bioregistry/export/prefix_maps.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/tsv_export.py -> build/bdist.linux-i686/wheel/./bioregistry/export -copying build/lib/bioregistry/export/sssom_export.py -> build/bdist.linux-i686/wheel/./bioregistry/export -copying build/lib/bioregistry/export/__main__.py -> build/bdist.linux-i686/wheel/./bioregistry/export -copying build/lib/bioregistry/export/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/yaml_export.py -> build/bdist.linux-i686/wheel/./bioregistry/export -copying build/lib/bioregistry/export/schema_export.py -> build/bdist.linux-i686/wheel/./bioregistry/export +copying build/lib/bioregistry/export/__main__.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/warnings_export.py -> build/bdist.linux-i686/wheel/./bioregistry/export -copying build/lib/bioregistry/export/prefix_maps.py -> build/bdist.linux-i686/wheel/./bioregistry/export -copying build/lib/bioregistry/export/prefixcc.py -> build/bdist.linux-i686/wheel/./bioregistry/export +copying build/lib/bioregistry/export/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/export copying build/lib/bioregistry/export/cli.py -> build/bdist.linux-i686/wheel/./bioregistry/export -copying build/lib/bioregistry/export/tables_export.py -> build/bdist.linux-i686/wheel/./bioregistry/export -creating build/bdist.linux-i686/wheel/bioregistry/analysis -copying build/lib/bioregistry/analysis/paper_ranking_requirements.txt -> build/bdist.linux-i686/wheel/./bioregistry/analysis -copying build/lib/bioregistry/analysis/bioregistry_diff.py -> build/bdist.linux-i686/wheel/./bioregistry/analysis -copying build/lib/bioregistry/analysis/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/analysis -copying build/lib/bioregistry/analysis/paper_ranking.py -> build/bdist.linux-i686/wheel/./bioregistry/analysis -copying build/lib/bioregistry/schema_utils.py -> build/bdist.linux-i686/wheel/./bioregistry -copying build/lib/bioregistry/collection_api.py -> build/bdist.linux-i686/wheel/./bioregistry -copying build/lib/bioregistry/utils.py -> build/bdist.linux-i686/wheel/./bioregistry -copying build/lib/bioregistry/uri_format.py -> build/bdist.linux-i686/wheel/./bioregistry -creating build/bdist.linux-i686/wheel/bioregistry/data -copying build/lib/bioregistry/data/contexts.json -> build/bdist.linux-i686/wheel/./bioregistry/data -copying build/lib/bioregistry/data/metaregistry.json -> build/bdist.linux-i686/wheel/./bioregistry/data -copying build/lib/bioregistry/data/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/data -copying build/lib/bioregistry/data/bioregistry.json -> build/bdist.linux-i686/wheel/./bioregistry/data -copying build/lib/bioregistry/data/mismatch.json -> build/bdist.linux-i686/wheel/./bioregistry/data -copying build/lib/bioregistry/data/README.md -> build/bdist.linux-i686/wheel/./bioregistry/data -copying build/lib/bioregistry/data/collections.json -> build/bdist.linux-i686/wheel/./bioregistry/data -copying build/lib/bioregistry/upload_ndex.py -> build/bdist.linux-i686/wheel/./bioregistry -creating build/bdist.linux-i686/wheel/bioregistry/benchmarks -copying build/lib/bioregistry/benchmarks/__main__.py -> build/bdist.linux-i686/wheel/./bioregistry/benchmarks -copying build/lib/bioregistry/benchmarks/uri_parsing.py -> build/bdist.linux-i686/wheel/./bioregistry/benchmarks -copying build/lib/bioregistry/benchmarks/__init__.py -> build/bdist.linux-i686/wheel/./bioregistry/benchmarks -copying build/lib/bioregistry/benchmarks/curie_parsing.py -> build/bdist.linux-i686/wheel/./bioregistry/benchmarks -copying build/lib/bioregistry/benchmarks/curie_validation.py -> build/bdist.linux-i686/wheel/./bioregistry/benchmarks -copying build/lib/bioregistry/benchmarks/cli.py -> build/bdist.linux-i686/wheel/./bioregistry/benchmarks -copying build/lib/bioregistry/parse_version_iri.py -> build/bdist.linux-i686/wheel/./bioregistry +copying build/lib/bioregistry/export/schema_export.py -> build/bdist.linux-i686/wheel/./bioregistry/export +copying build/lib/bioregistry/export/sssom_export.py -> build/bdist.linux-i686/wheel/./bioregistry/export +copying build/lib/bioregistry/bibliometrics.py -> build/bdist.linux-i686/wheel/./bioregistry copying build/lib/bioregistry/cli.py -> build/bdist.linux-i686/wheel/./bioregistry +copying build/lib/bioregistry/constants.py -> build/bdist.linux-i686/wheel/./bioregistry +copying build/lib/bioregistry/resolve_identifier.py -> build/bdist.linux-i686/wheel/./bioregistry +copying build/lib/bioregistry/uri_format.py -> build/bdist.linux-i686/wheel/./bioregistry running install_egg_info Copying src/bioregistry.egg-info to build/bdist.linux-i686/wheel/./bioregistry-0.11.12.egg-info running install_scripts creating build/bdist.linux-i686/wheel/bioregistry-0.11.12.dist-info/WHEEL -creating '/build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/.tmp-277rxz41/bioregistry-0.11.12-py3-none-any.whl' and adding 'build/bdist.linux-i686/wheel' to it +creating '/build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/.tmp-9lt779j9/bioregistry-0.11.12-py3-none-any.whl' and adding 'build/bdist.linux-i686/wheel' to it adding 'bioregistry/__init__.py' adding 'bioregistry/__main__.py' adding 'bioregistry/bibliometrics.py' @@ -1807,7 +1843,7 @@ platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/python-bioregistry-0.11.12/.pybuild/cpython3_3.13/build configfile: pyproject.toml -plugins: anyio-4.7.0, typeguard-4.4.2 +plugins: typeguard-4.4.2, anyio-4.7.0 collected 137 items / 6 deselected / 131 selected tests/test_api.py . [ 0%] @@ -1968,7 +2004,7 @@ yaml.safe_dump(data.dict(exclude_unset=True, exclude_none=True), allow_unicode=True), -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -== 125 passed, 6 skipped, 6 deselected, 1450840 warnings in 311.52s (0:05:11) == +== 125 passed, 6 skipped, 6 deselected, 1450840 warnings in 755.11s (0:12:35) == create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -2003,12 +2039,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/32152/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/32152/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/43544 and its subdirectories -I: Current time: Sun Apr 12 01:32:52 -12 2026 -I: pbuilder-time-stamp: 1776000772 +I: removing directory /srv/workspace/pbuilder/32152 and its subdirectories +I: Current time: Mon Mar 10 21:26:06 +14 2025 +I: pbuilder-time-stamp: 1741591566 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/python-bioregistry_0.11.12-3.diff: 89.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/python-bioregistry_0.11.12-3.diff.gz b2/build.log: 86.1% -- replaced with stdout Compressing the 1st log... b1/build.log: 86.5% -- replaced with stdout Mon Mar 10 07:26:10 UTC 2025 I: diffoscope 289 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_python-bioregistry_trixie_i386_1741591570 + touch /var/log/reproducible-builds/diffoscope_stamp_python-bioregistry_trixie_i386_1741591570 + RESULT=0 + systemd-run '--description=diffoscope on python-bioregistry/0.11.12-3 in trixie/i386' --slice=rb-build-diffoscope.slice -u rb-diffoscope-i386_10-46240 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22 --run-session -c jenkins-reproducible-trixie-diffoscope-dd88b113-df4c-4a6b-8214-789d30261aad -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22/dbd-tmp-G4JC6Mk ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22/python-bioregistry_0.11.12-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22/python-bioregistry_0.11.12-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22/python-bioregistry_0.11.12-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22/b1/python-bioregistry_0.11.12-3_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22/b2/python-bioregistry_0.11.12-3_i386.changes' + false + set +x Running as unit: rb-diffoscope-i386_10-46240.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22/python-bioregistry_0.11.12-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22/python-bioregistry_0.11.12-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22/python-bioregistry_0.11.12-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22/b1/python-bioregistry_0.11.12-3_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.rtQH9A22/b2/python-bioregistry_0.11.12-3_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.006s) 0.006s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 397ms CPU time consumed: 382ms _ _ _ _ _ _ __ _ _| |_| |__ ___ _ __ | |__ (_) ___ _ __ ___ __ _(_)___ | '_ \| | | | __| '_ \ / _ \| '_ \ _____| '_ \| |/ _ \| '__/ _ \/ _` | / __| | |_) | |_| | |_| | | | (_) | | | |_____| |_) | | (_) | | | __/ (_| | \__ \ | .__/ \__, |\__|_| |_|\___/|_| |_| |_.__/|_|\___/|_| \___|\__, |_|___/ |_| |___/ |___/ _ | |_ _ __ _ _ | __| '__| | | | | |_| | | |_| | \__|_| \__, | |___/ Mon Mar 10 07:26:11 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists. Mon Mar 10 07:26:11 UTC 2025 I: python-bioregistry from trixie built successfully and reproducibly on i386. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-03-10 07:26:12] INFO: Starting at 2025-03-10 07:26:12.333279 [2025-03-10 07:26:12] INFO: Generating the pages of 1 package(s) [2025-03-10 07:26:12] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/i386/python-bioregistry didn't produce a buildlog, even though it has been built. [2025-03-10 07:26:12] INFO: Finished at 2025-03-10 07:26:12.511964, took: 0:00:00.178689 Mon Mar 10 07:26:12 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/i386/python-bioregistry.html Mon Mar 10 07:26:12 UTC 2025 I: Submitting .buildinfo files to external archives: Mon Mar 10 07:26:12 UTC 2025 I: Submitting 12K b1/python-bioregistry_0.11.12-3_i386.buildinfo.asc https://buildinfo.debian.net/da650433c272ae7d73b54fbac720b2ac07a8e858/python-bioregistry_0.11.12-3_all Mon Mar 10 07:26:13 UTC 2025 I: Submitting 12K b2/python-bioregistry_0.11.12-3_i386.buildinfo.asc https://buildinfo.debian.net/fe206f49490b2bac485b9d6de588e7038787fbc4/python-bioregistry_0.11.12-3_all Mon Mar 10 07:26:14 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Mar 10 07:26:14 UTC 2025 I: Done submitting .buildinfo files. Mon Mar 10 07:26:14 UTC 2025 I: Removing signed python-bioregistry_0.11.12-3_i386.buildinfo.asc files: removed './b1/python-bioregistry_0.11.12-3_i386.buildinfo.asc' removed './b2/python-bioregistry_0.11.12-3_i386.buildinfo.asc' 1741591574 i386 trixie python-bioregistry Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/python-bioregistry_0.11.12-3.rbuild.log: 85.2% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/python-bioregistry_0.11.12-3.rbuild.log.gz [2025-03-10 07:26:14] INFO: Starting at 2025-03-10 07:26:14.524523 [2025-03-10 07:26:14] INFO: Generating the pages of 1 package(s) [2025-03-10 07:26:14] INFO: Finished at 2025-03-10 07:26:14.698951, took: 0:00:00.174439 All cleanup done. Mon Mar 10 07:26:14 UTC 2025 - total duration: 0h 23m 7s. Mon Mar 10 07:26:14 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-uACX94ql, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 23min 10.765s CPU time consumed: 7.506s