Running as unit: rb-build-i386_11-42564.service ==================================================================================== Tue Jan 21 22:16:55 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_i386_11) on jenkins, called using "ionos6-i386 ionos12-i386" as arguments. Tue Jan 21 22:16:55 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-KEigys4n" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Tue Jan 21 22:16:55 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos6-i386.debian.net is marked as down. Tue Jan 21 22:16:55 UTC 2025 - checking via ssh if ionos6-i386.debian.net is up. removed '/tmp/read-only-fs-test-czkEEr' Tue Jan 21 22:16:56 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos12-i386.debian.net is marked as down. Tue Jan 21 22:16:56 UTC 2025 - checking via ssh if ionos12-i386.debian.net is up. removed '/tmp/read-only-fs-test-uHlO9e' ok, let's check if soapsnp is building anywhere yet… ok, soapsnp is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of soapsnp in unstable on i386 on jenkins now. 1st build will be done on ionos6-i386.debian.net. 2nd build will be done on ionos12-i386.debian.net. ============================================================================= Tue Jan 21 22:17:10 UTC 2025 I: starting to build soapsnp/unstable/i386 on jenkins on '2025-01-21 22:16' Tue Jan 21 22:17:10 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_11/42564/console.log 1737497830 i386 unstable soapsnp Tue Jan 21 22:17:10 UTC 2025 I: Downloading source for unstable/soapsnp=1.03-5 --2025-01-21 22:17:10-- http://deb.debian.org/debian/pool/main/s/soapsnp/soapsnp_1.03-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1961 (1.9K) [text/prs.lines.tag] Saving to: ‘soapsnp_1.03-5.dsc’ 0K . 100% 249M=0s 2025-01-21 22:17:10 (249 MB/s) - ‘soapsnp_1.03-5.dsc’ saved [1961/1961] --2025-01-21 22:17:10-- http://deb.debian.org/debian/pool/main/s/soapsnp/soapsnp_1.03-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1961 (1.9K) [text/prs.lines.tag] Saving to: ‘soapsnp_1.03-5.dsc’ 0K . 100% 249M=0s 2025-01-21 22:17:10 (249 MB/s) - ‘soapsnp_1.03-5.dsc’ saved [1961/1961] Tue Jan 21 22:17:10 UTC 2025 I: soapsnp_1.03-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: soapsnp Binary: soapsnp Architecture: any Version: 1.03-5 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: http://soap.genomics.org.cn/soapsnp.html Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/soapsnp Vcs-Git: https://salsa.debian.org/med-team/soapsnp.git Build-Depends: debhelper-compat (= 13), libboost-iostreams-dev, zlib1g-dev Package-List: soapsnp deb science optional arch=any Checksums-Sha1: f151594b5984c3c44ef2b61cebb17e0d97a7576e 38151 soapsnp_1.03.orig.tar.gz 5227653b21fa0fe661ce16d85259bcbb26bce0c6 3596 soapsnp_1.03-5.debian.tar.xz Checksums-Sha256: 68aab997285c4fece0f2900eb89df90edc7d8596fd6bc637bd922bbc8563f6d0 38151 soapsnp_1.03.orig.tar.gz 6498b123f0deeca5fe60e865a560027c29c2dc72ca152aff90f3d00d4340c301 3596 soapsnp_1.03-5.debian.tar.xz Files: 8d69e196013657357ff840b611762ebc 38151 soapsnp_1.03.orig.tar.gz 3e654495fdd080161728c3a88ee3311a 3596 soapsnp_1.03-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmPgEEcRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtE5cQ/7BYaVV2Zd+pRU0Siqmw30rZ/P+mmzW0pK RieC8kPuF6LwzeQRqhk6Rtn5QBcnvLoiqm4eWFqYdjq59/CFtQSCyl+jpZdNIlia WScgC7V+ZKVMUcSi1QVNm9fQebquG3c4VvYu18gj8cWWiqGYfxCi4dkPNW2EglKV cCuhX34bmvWI2ZysqrjQ8bziPvE5LXBcEiGc/7VN1DVlVLI6Qyea34Ir2Vf1HisQ fhtjv9TaSqiYHjM37Ar6gmeNtVFMvUAr9ysOxmewyGIanMAU1zbIRQncXmdYHkqF tZutjfVBG1YFjq6JOVSSQW+SyZbLxV6Rtu3XVLSadS2zG8M6yPRFek4jvdgMuXCZ 5N5MxT4QvqYWiLmFZz0iT8v88TDMtZ+JHkUVBklrMtYj1uJWkCrS/J68RCvBtsRr 4QBYHZUaC2VM10NkI59KRqZSimyCTiN036tJwIaLixt4jrQTQHnfzhBaUZRPF5R0 pZlPQM4RY4aQoMMS1eE/8KluqRnf5z5/jkAD6UP67LlzO014x+qVcDyZ6GJxWkTj +MuD/ZIlgVwrIBla2HRTNXnFSYouEgb+wTdIt9dKTOGd2SNTAoAhEsdFgPR58J0X 6kSXh30D50VGqeDiOOEsSKmOY8wlHB5xuNe3PZlRCo7s0BBlIyQONSGT07G19K/P 25HZPjUPi7I= =L281 -----END PGP SIGNATURE----- Tue Jan 21 22:17:10 UTC 2025 I: Checking whether the package is not for us Tue Jan 21 22:17:10 UTC 2025 I: Starting 1st build on remote node ionos6-i386.debian.net. Tue Jan 21 22:17:10 UTC 2025 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Tue Jan 21 22:17:10 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos6-i386.debian.net is marked as down. Tue Jan 21 22:17:10 UTC 2025 - checking via ssh if ionos6-i386.debian.net is up. removed '/tmp/read-only-fs-test-OAzZUP' ==================================================================================== Tue Feb 24 04:40:11 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos6-i386, called using "1 soapsnp unstable /srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu 1.03-5" as arguments. Tue Feb 24 04:40:11 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-QhSFtG6S" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Tue Feb 24 04:40:11 UTC 2026 I: Downloading source for unstable/soapsnp=1.03-5 Reading package lists... NOTICE: 'soapsnp' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/soapsnp.git Please use: git clone https://salsa.debian.org/med-team/soapsnp.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 43.7 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main soapsnp 1.03-5 (dsc) [1961 B] Get:2 http://deb.debian.org/debian unstable/main soapsnp 1.03-5 (tar) [38.2 kB] Get:3 http://deb.debian.org/debian unstable/main soapsnp 1.03-5 (diff) [3596 B] Fetched 43.7 kB in 0s (1696 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'soapsnp' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/soapsnp.git Please use: git clone https://salsa.debian.org/med-team/soapsnp.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 43.7 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main soapsnp 1.03-5 (dsc) [1961 B] Get:2 http://deb.debian.org/debian unstable/main soapsnp 1.03-5 (tar) [38.2 kB] Get:3 http://deb.debian.org/debian unstable/main soapsnp 1.03-5 (diff) [3596 B] Fetched 43.7 kB in 0s (1696 kB/s) Download complete and in download only mode ============================================================================= Building soapsnp in unstable on i386 on ionos6-i386 now. Date: Tue Feb 24 05:40:11 CET 2026 Date UTC: Tue Feb 24 04:40:11 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Mon Feb 23 16:40:12 -12 2026 I: pbuilder-time-stamp: 1771908012 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [soapsnp_1.03-5.dsc] I: copying [./soapsnp_1.03.orig.tar.gz] I: copying [./soapsnp_1.03-5.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./soapsnp_1.03-5.dsc: unsupported subcommand dpkg-source: info: extracting soapsnp in soapsnp-1.03 dpkg-source: info: unpacking soapsnp_1.03.orig.tar.gz dpkg-source: info: unpacking soapsnp_1.03-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Makefile.patch dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/69376/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='0f810fe096df44618e7cd7920446f7c1' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='69376' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu/pbuilderrc_HmCR --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu/b1 --logfile b1/build.log soapsnp_1.03-5.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos6-i386 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/69376/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libboost-iostreams-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19836 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost1.83-dev{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu-dev{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 38 newly installed, 0 to remove and 0 not upgraded. Need to get 44.1 MB of archives. After unpacking 296 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.23.1-1 [245 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-7 [1199 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.4-1 [96.1 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-5 [301 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 libtool all 2.5.4-2 [539 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.1-1 [8584 B] Get: 22 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 libunistring5 i386 1.3-1 [458 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-6 [9582 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 gettext i386 0.23.1-1 [1714 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 debhelper all 13.24.1 [920 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 icu-devtools i386 72.1-6 [218 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 libboost1.83-dev i386 1.83.0-4 [10.6 MB] Get: 33 http://deb.debian.org/debian unstable/main i386 libboost-regex1.83.0 i386 1.83.0-4 [329 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 libicu-dev i386 72.1-6 [10.6 MB] Get: 35 http://deb.debian.org/debian unstable/main i386 libboost-regex1.83-dev i386 1.83.0-4 [347 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 libboost-iostreams1.83-dev i386 1.83.0-4 [264 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 libboost-iostreams-dev i386 1.83.0.2+b2 [3588 B] Get: 38 http://deb.debian.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Fetched 44.1 MB in 2s (24.5 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19836 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_i386.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_i386.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_i386.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.4-1_i386.deb ... Unpacking bsdextrautils (2.40.4-1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../08-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-5_i386.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.1_all.deb ... Unpacking libdebhelper-perl (13.24.1) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-2_all.deb ... Unpacking libtool (2.5.4-2) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-1) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../21-libelf1t64_0.192-4_i386.deb ... Unpacking libelf1t64:i386 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:i386. Preparing to unpack .../23-libunistring5_1.3-1_i386.deb ... Unpacking libunistring5:i386 (1.3-1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../24-libicu72_72.1-6_i386.deb ... Unpacking libicu72:i386 (72.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_i386.deb ... Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.23.1-1_i386.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.24.1_all.deb ... Unpacking debhelper (13.24.1) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../30-icu-devtools_72.1-6_i386.deb ... Unpacking icu-devtools (72.1-6) ... Selecting previously unselected package libboost1.83-dev:i386. Preparing to unpack .../31-libboost1.83-dev_1.83.0-4_i386.deb ... Unpacking libboost1.83-dev:i386 (1.83.0-4) ... Selecting previously unselected package libboost-regex1.83.0:i386. Preparing to unpack .../32-libboost-regex1.83.0_1.83.0-4_i386.deb ... Unpacking libboost-regex1.83.0:i386 (1.83.0-4) ... Selecting previously unselected package libicu-dev:i386. Preparing to unpack .../33-libicu-dev_72.1-6_i386.deb ... Unpacking libicu-dev:i386 (72.1-6) ... Selecting previously unselected package libboost-regex1.83-dev:i386. Preparing to unpack .../34-libboost-regex1.83-dev_1.83.0-4_i386.deb ... Unpacking libboost-regex1.83-dev:i386 (1.83.0-4) ... Selecting previously unselected package libboost-iostreams1.83-dev:i386. Preparing to unpack .../35-libboost-iostreams1.83-dev_1.83.0-4_i386.deb ... Unpacking libboost-iostreams1.83-dev:i386 (1.83.0-4) ... Selecting previously unselected package libboost-iostreams-dev:i386. Preparing to unpack .../36-libboost-iostreams-dev_1.83.0.2+b2_i386.deb ... Unpacking libboost-iostreams-dev:i386 (1.83.0.2+b2) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../37-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpipeline1:i386 (1.5.8-1) ... Setting up libboost1.83-dev:i386 (1.83.0-4) ... Setting up libicu72:i386 (72.1-6) ... Setting up bsdextrautils (2.40.4-1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libboost-regex1.83.0:i386 (1.83.0-4) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libmagic1t64:i386 (1:5.45-3+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:i386 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up libunistring5:i386 (1.3-1) ... Setting up autopoint (0.23.1-1) ... Setting up icu-devtools (72.1-6) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b2) ... Setting up libicu-dev:i386 (72.1-6) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-1) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libboost-regex1.83-dev:i386 (1.83.0-4) ... Setting up dh-strip-nondeterminism (1.14.1-1) ... Setting up groff-base (1.23.0-7) ... Setting up libboost-iostreams1.83-dev:i386 (1.83.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libboost-iostreams-dev:i386 (1.83.0.2+b2) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.1) ... Processing triggers for libc-bin (2.40-5) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/soapsnp-1.03/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../soapsnp_1.03-5_source.changes dpkg-buildpackage: info: source package soapsnp dpkg-buildpackage: info: source version 1.03-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_auto_clean make -j22 clean make[1]: Entering directory '/build/reproducible-path/soapsnp-1.03' rm -f *.o soapsnp make[1]: Leaving directory '/build/reproducible-path/soapsnp-1.03' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j22 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/soapsnp-1.03' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o call_genotype.o call_genotype.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o chromosome.o chromosome.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o matrix.o matrix.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o normal_dis.o normal_dis.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o prior.o prior.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rank_sum.o rank_sum.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o main.o main.cc g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops call_genotype.o chromosome.o matrix.o normal_dis.o prior.o rank_sum.o main.o -o soapsnp -lz -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/build/reproducible-path/soapsnp-1.03' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/soapsnp/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'soapsnp' in '../soapsnp_1.03-5_i386.deb'. dpkg-deb: building package 'soapsnp-dbgsym' in '../soapsnp-dbgsym_1.03-5_i386.deb'. dpkg-genbuildinfo --build=binary -O../soapsnp_1.03-5_i386.buildinfo dpkg-genchanges --build=binary -O../soapsnp_1.03-5_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/69376 and its subdirectories I: Current time: Mon Feb 23 16:40:41 -12 2026 I: pbuilder-time-stamp: 1771908041 Tue Feb 24 04:40:41 UTC 2026 I: Signing ./b1/soapsnp_1.03-5_i386.buildinfo as soapsnp_1.03-5_i386.buildinfo.asc Tue Feb 24 04:40:41 UTC 2026 I: Signed ./b1/soapsnp_1.03-5_i386.buildinfo as ./b1/soapsnp_1.03-5_i386.buildinfo.asc Tue Feb 24 04:40:41 UTC 2026 - build #1 for soapsnp/unstable/i386 on ionos6-i386 done. Starting cleanup. All cleanup done. Tue Feb 24 04:40:41 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-QhSFtG6S, removing. /srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Jan 21 22:17 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jan 21 22:17 b2 -rw------- 1 jenkins jenkins 3052 Jan 21 22:17 rbuildlog.OhsOWNy -rw-r--r-- 1 jenkins jenkins 1961 Feb 5 2023 soapsnp_1.03-5.dsc /srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu/b1: total 492 -rw-r--r-- 1 jenkins jenkins 23135 Jan 21 22:17 build.log -rw-r--r-- 1 jenkins jenkins 392388 Jan 21 22:17 soapsnp-dbgsym_1.03-5_i386.deb -rw-r--r-- 1 jenkins jenkins 3596 Jan 21 22:17 soapsnp_1.03-5.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1961 Jan 21 22:17 soapsnp_1.03-5.dsc -rw-r--r-- 1 jenkins jenkins 5202 Jan 21 22:17 soapsnp_1.03-5_i386.buildinfo -rw-r--r-- 1 jenkins jenkins 6084 Jan 21 22:17 soapsnp_1.03-5_i386.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1371 Jan 21 22:17 soapsnp_1.03-5_i386.changes -rw-r--r-- 1 jenkins jenkins 51344 Jan 21 22:17 soapsnp_1.03-5_i386.deb -rw-r--r-- 1 jenkins jenkins 1221 Jan 21 22:17 soapsnp_1.03-5_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu/b2: total 0 Tue Jan 21 22:17:43 UTC 2025 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Feb 23 16:40:12 -12 2026 I: pbuilder-time-stamp: 1771908012 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [soapsnp_1.03-5.dsc] I: copying [./soapsnp_1.03.orig.tar.gz] I: copying [./soapsnp_1.03-5.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./soapsnp_1.03-5.dsc: unsupported subcommand dpkg-source: info: extracting soapsnp in soapsnp-1.03 dpkg-source: info: unpacking soapsnp_1.03.orig.tar.gz dpkg-source: info: unpacking soapsnp_1.03-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Makefile.patch dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/69376/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='0f810fe096df44618e7cd7920446f7c1' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='69376' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu/pbuilderrc_HmCR --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu/b1 --logfile b1/build.log soapsnp_1.03-5.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos6-i386 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/69376/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libboost-iostreams-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19836 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost1.83-dev{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu-dev{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 38 newly installed, 0 to remove and 0 not upgraded. Need to get 44.1 MB of archives. After unpacking 296 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.23.1-1 [245 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-7 [1199 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.4-1 [96.1 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-5 [301 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 libtool all 2.5.4-2 [539 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.1-1 [8584 B] Get: 22 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 libunistring5 i386 1.3-1 [458 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-6 [9582 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 gettext i386 0.23.1-1 [1714 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 debhelper all 13.24.1 [920 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 icu-devtools i386 72.1-6 [218 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 libboost1.83-dev i386 1.83.0-4 [10.6 MB] Get: 33 http://deb.debian.org/debian unstable/main i386 libboost-regex1.83.0 i386 1.83.0-4 [329 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 libicu-dev i386 72.1-6 [10.6 MB] Get: 35 http://deb.debian.org/debian unstable/main i386 libboost-regex1.83-dev i386 1.83.0-4 [347 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 libboost-iostreams1.83-dev i386 1.83.0-4 [264 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 libboost-iostreams-dev i386 1.83.0.2+b2 [3588 B] Get: 38 http://deb.debian.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Fetched 44.1 MB in 2s (24.5 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19836 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:i386. 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Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-5_i386.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. 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Setting up libicu72:i386 (72.1-6) ... Setting up bsdextrautils (2.40.4-1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libboost-regex1.83.0:i386 (1.83.0-4) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libmagic1t64:i386 (1:5.45-3+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:i386 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up libunistring5:i386 (1.3-1) ... Setting up autopoint (0.23.1-1) ... Setting up icu-devtools (72.1-6) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b2) ... Setting up libicu-dev:i386 (72.1-6) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-1) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libboost-regex1.83-dev:i386 (1.83.0-4) ... Setting up dh-strip-nondeterminism (1.14.1-1) ... Setting up groff-base (1.23.0-7) ... Setting up libboost-iostreams1.83-dev:i386 (1.83.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libboost-iostreams-dev:i386 (1.83.0.2+b2) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.1) ... Processing triggers for libc-bin (2.40-5) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/soapsnp-1.03/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../soapsnp_1.03-5_source.changes dpkg-buildpackage: info: source package soapsnp dpkg-buildpackage: info: source version 1.03-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_auto_clean make -j22 clean make[1]: Entering directory '/build/reproducible-path/soapsnp-1.03' rm -f *.o soapsnp make[1]: Leaving directory '/build/reproducible-path/soapsnp-1.03' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j22 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/soapsnp-1.03' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o call_genotype.o call_genotype.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o chromosome.o chromosome.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o matrix.o matrix.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o normal_dis.o normal_dis.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o prior.o prior.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rank_sum.o rank_sum.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o main.o main.cc g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops call_genotype.o chromosome.o matrix.o normal_dis.o prior.o rank_sum.o main.o -o soapsnp -lz -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/build/reproducible-path/soapsnp-1.03' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/soapsnp/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'soapsnp' in '../soapsnp_1.03-5_i386.deb'. dpkg-deb: building package 'soapsnp-dbgsym' in '../soapsnp-dbgsym_1.03-5_i386.deb'. dpkg-genbuildinfo --build=binary -O../soapsnp_1.03-5_i386.buildinfo dpkg-genchanges --build=binary -O../soapsnp_1.03-5_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/69376 and its subdirectories I: Current time: Mon Feb 23 16:40:41 -12 2026 I: pbuilder-time-stamp: 1771908041 Tue Jan 21 22:17:43 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos12-i386.debian.net. Tue Jan 21 22:17:43 UTC 2025 I: Preparing to do remote build '2' on ionos12-i386.debian.net. Tue Jan 21 22:17:43 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos12-i386.debian.net is marked as down. Tue Jan 21 22:17:43 UTC 2025 - checking via ssh if ionos12-i386.debian.net is up. removed '/tmp/read-only-fs-test-vnfbLd' ==================================================================================== Tue Jan 21 22:17:45 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos12-i386, called using "2 soapsnp unstable /srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu 1.03-5" as arguments. Tue Jan 21 22:17:45 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-VN84iGyJ" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Tue Jan 21 22:17:45 UTC 2025 I: Downloading source for unstable/soapsnp=1.03-5 Reading package lists... NOTICE: 'soapsnp' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/soapsnp.git Please use: git clone https://salsa.debian.org/med-team/soapsnp.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 43.7 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main soapsnp 1.03-5 (dsc) [1961 B] Get:2 http://deb.debian.org/debian unstable/main soapsnp 1.03-5 (tar) [38.2 kB] Get:3 http://deb.debian.org/debian unstable/main soapsnp 1.03-5 (diff) [3596 B] Fetched 43.7 kB in 0s (1433 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'soapsnp' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/soapsnp.git Please use: git clone https://salsa.debian.org/med-team/soapsnp.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 43.7 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main soapsnp 1.03-5 (dsc) [1961 B] Get:2 http://deb.debian.org/debian unstable/main soapsnp 1.03-5 (tar) [38.2 kB] Get:3 http://deb.debian.org/debian unstable/main soapsnp 1.03-5 (diff) [3596 B] Fetched 43.7 kB in 0s (1433 kB/s) Download complete and in download only mode ============================================================================= Re-Building soapsnp in unstable on i386 on ionos12-i386 now. Date: Tue Jan 21 23:17:45 CET 2025 Date UTC: Tue Jan 21 22:17:45 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu/pbuilderrc_ZYz4 + case ${ARCH} in + let NUM_CPU-=3 + case $ARCH in + locale=de_CH + language=de + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' soapsnp = debian-installer -o soapsnp = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' soapsnp = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu/pbuilderrc_ZYz4 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu/b2 --logfile b2/build.log soapsnp_1.03-5.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Jan 22 12:17:45 +14 2025 I: pbuilder-time-stamp: 1737497865 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [soapsnp_1.03-5.dsc] I: copying [./soapsnp_1.03.orig.tar.gz] I: copying [./soapsnp_1.03-5.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./soapsnp_1.03-5.dsc: unsupported subcommand dpkg-source: info: extracting soapsnp in soapsnp-1.03 dpkg-source: info: unpacking soapsnp_1.03.orig.tar.gz dpkg-source: info: unpacking soapsnp_1.03-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Makefile.patch dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/55244/tmp/hooks/D01_modify_environment starting debug: Running on ionos12-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jan 21 22:17 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/55244/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/55244/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=3e5bd61354844c8e85b5b96897b0b257 LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=55244 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu/pbuilderrc_ZYz4 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu/b2 --logfile b2/build.log soapsnp_1.03-5.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/55244/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libboost-iostreams-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19836 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost1.83-dev{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu-dev{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 38 newly installed, 0 to remove and 0 not upgraded. Need to get 44.1 MB of archives. After unpacking 296 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.23.1-1 [245 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-7 [1199 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.4-1 [96.1 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-5 [301 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 libtool all 2.5.4-2 [539 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.1-1 [8584 B] Get: 22 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 libunistring5 i386 1.3-1 [458 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-6 [9582 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 gettext i386 0.23.1-1 [1714 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 debhelper all 13.24.1 [920 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 icu-devtools i386 72.1-6 [218 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 libboost1.83-dev i386 1.83.0-4 [10.6 MB] Get: 33 http://deb.debian.org/debian unstable/main i386 libboost-regex1.83.0 i386 1.83.0-4 [329 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 libicu-dev i386 72.1-6 [10.6 MB] Get: 35 http://deb.debian.org/debian unstable/main i386 libboost-regex1.83-dev i386 1.83.0-4 [347 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 libboost-iostreams1.83-dev i386 1.83.0-4 [264 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 libboost-iostreams-dev i386 1.83.0.2+b2 [3588 B] Get: 38 http://deb.debian.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Fetched 44.1 MB in 1s (59.8 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19836 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_i386.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_i386.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_i386.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.4-1_i386.deb ... Unpacking bsdextrautils (2.40.4-1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../08-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-5_i386.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.1_all.deb ... Unpacking libdebhelper-perl (13.24.1) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-2_all.deb ... Unpacking libtool (2.5.4-2) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-1) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../21-libelf1t64_0.192-4_i386.deb ... Unpacking libelf1t64:i386 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:i386. Preparing to unpack .../23-libunistring5_1.3-1_i386.deb ... Unpacking libunistring5:i386 (1.3-1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../24-libicu72_72.1-6_i386.deb ... Unpacking libicu72:i386 (72.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_i386.deb ... Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.23.1-1_i386.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.24.1_all.deb ... Unpacking debhelper (13.24.1) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../30-icu-devtools_72.1-6_i386.deb ... Unpacking icu-devtools (72.1-6) ... Selecting previously unselected package libboost1.83-dev:i386. Preparing to unpack .../31-libboost1.83-dev_1.83.0-4_i386.deb ... Unpacking libboost1.83-dev:i386 (1.83.0-4) ... Selecting previously unselected package libboost-regex1.83.0:i386. Preparing to unpack .../32-libboost-regex1.83.0_1.83.0-4_i386.deb ... Unpacking libboost-regex1.83.0:i386 (1.83.0-4) ... Selecting previously unselected package libicu-dev:i386. Preparing to unpack .../33-libicu-dev_72.1-6_i386.deb ... Unpacking libicu-dev:i386 (72.1-6) ... Selecting previously unselected package libboost-regex1.83-dev:i386. Preparing to unpack .../34-libboost-regex1.83-dev_1.83.0-4_i386.deb ... Unpacking libboost-regex1.83-dev:i386 (1.83.0-4) ... Selecting previously unselected package libboost-iostreams1.83-dev:i386. Preparing to unpack .../35-libboost-iostreams1.83-dev_1.83.0-4_i386.deb ... Unpacking libboost-iostreams1.83-dev:i386 (1.83.0-4) ... Selecting previously unselected package libboost-iostreams-dev:i386. Preparing to unpack .../36-libboost-iostreams-dev_1.83.0.2+b2_i386.deb ... Unpacking libboost-iostreams-dev:i386 (1.83.0.2+b2) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../37-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpipeline1:i386 (1.5.8-1) ... Setting up libboost1.83-dev:i386 (1.83.0-4) ... Setting up libicu72:i386 (72.1-6) ... Setting up bsdextrautils (2.40.4-1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libboost-regex1.83.0:i386 (1.83.0-4) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libmagic1t64:i386 (1:5.45-3+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:i386 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up libunistring5:i386 (1.3-1) ... Setting up autopoint (0.23.1-1) ... Setting up icu-devtools (72.1-6) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b2) ... Setting up libicu-dev:i386 (72.1-6) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-1) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libboost-regex1.83-dev:i386 (1.83.0-4) ... Setting up dh-strip-nondeterminism (1.14.1-1) ... Setting up groff-base (1.23.0-7) ... Setting up libboost-iostreams1.83-dev:i386 (1.83.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libboost-iostreams-dev:i386 (1.83.0.2+b2) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.1) ... Processing triggers for libc-bin (2.40-5) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/55244/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/55244/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/soapsnp-1.03/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../soapsnp_1.03-5_source.changes dpkg-buildpackage: info: source package soapsnp dpkg-buildpackage: info: source version 1.03-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_auto_clean make -j10 clean make[1]: Entering directory '/build/reproducible-path/soapsnp-1.03' rm -f *.o soapsnp make[1]: Leaving directory '/build/reproducible-path/soapsnp-1.03' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j10 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/soapsnp-1.03' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o call_genotype.o call_genotype.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o chromosome.o chromosome.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o matrix.o matrix.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o normal_dis.o normal_dis.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o prior.o prior.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rank_sum.o rank_sum.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o main.o main.cc g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops call_genotype.o chromosome.o matrix.o normal_dis.o prior.o rank_sum.o main.o -o soapsnp -lz -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/build/reproducible-path/soapsnp-1.03' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/soapsnp/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'soapsnp-dbgsym' in '../soapsnp-dbgsym_1.03-5_i386.deb'. dpkg-deb: building package 'soapsnp' in '../soapsnp_1.03-5_i386.deb'. dpkg-genbuildinfo --build=binary -O../soapsnp_1.03-5_i386.buildinfo dpkg-genchanges --build=binary -O../soapsnp_1.03-5_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/55244/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/55244/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/55244 and its subdirectories I: Current time: Wed Jan 22 12:18:32 +14 2025 I: pbuilder-time-stamp: 1737497912 + false + set +x Tue Jan 21 22:18:32 UTC 2025 I: Signing ./b2/soapsnp_1.03-5_i386.buildinfo as soapsnp_1.03-5_i386.buildinfo.asc Tue Jan 21 22:18:32 UTC 2025 I: Signed ./b2/soapsnp_1.03-5_i386.buildinfo as ./b2/soapsnp_1.03-5_i386.buildinfo.asc Tue Jan 21 22:18:32 UTC 2025 - build #2 for soapsnp/unstable/i386 on ionos12-i386 done. Starting cleanup. All cleanup done. Tue Jan 21 22:18:32 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-VN84iGyJ, removing. /srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu: total 40 drwxr-xr-x 2 jenkins jenkins 4096 Jan 21 22:17 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jan 21 22:18 b2 -rw------- 1 jenkins jenkins 26472 Jan 21 22:17 rbuildlog.OhsOWNy -rw-r--r-- 1 jenkins jenkins 1961 Feb 5 2023 soapsnp_1.03-5.dsc /srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu/b1: total 500 -rw-r--r-- 1 jenkins jenkins 23135 Jan 21 22:17 build.log -rw-r--r-- 1 jenkins jenkins 392388 Jan 21 22:17 soapsnp-dbgsym_1.03-5_i386.deb -rw-r--r-- 1 jenkins jenkins 3596 Jan 21 22:17 soapsnp_1.03-5.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1961 Jan 21 22:17 soapsnp_1.03-5.dsc -rw-r--r-- 1 jenkins jenkins 5202 Jan 21 22:17 soapsnp_1.03-5_i386.buildinfo -rw-r--r-- 1 jenkins jenkins 6084 Jan 21 22:17 soapsnp_1.03-5_i386.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1371 Jan 21 22:17 soapsnp_1.03-5_i386.changes -rw-r--r-- 1 jenkins jenkins 51344 Jan 21 22:17 soapsnp_1.03-5_i386.deb -rw-r--r-- 1 jenkins jenkins 1221 Jan 21 22:17 soapsnp_1.03-5_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu/b2: total 496 -rw-r--r-- 1 jenkins jenkins 25044 Jan 21 22:18 build.log -rw-r--r-- 1 jenkins jenkins 392388 Jan 21 22:18 soapsnp-dbgsym_1.03-5_i386.deb -rw-r--r-- 1 jenkins jenkins 3596 Jan 21 22:18 soapsnp_1.03-5.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1961 Jan 21 22:18 soapsnp_1.03-5.dsc -rw-r--r-- 1 jenkins jenkins 5202 Jan 21 22:18 soapsnp_1.03-5_i386.buildinfo -rw-r--r-- 1 jenkins jenkins 6084 Jan 21 22:18 soapsnp_1.03-5_i386.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1371 Jan 21 22:18 soapsnp_1.03-5_i386.changes -rw-r--r-- 1 jenkins jenkins 51344 Jan 21 22:18 soapsnp_1.03-5_i386.deb -rw-r--r-- 1 jenkins jenkins 1221 Jan 21 22:18 soapsnp_1.03-5_source.changes Tue Jan 21 22:18:33 UTC 2025 I: Deleting $TMPDIR on ionos12-i386.debian.net. Tue Jan 21 22:18:33 UTC 2025 I: soapsnp_1.03-5_i386.changes: Format: 1.8 Date: Sun, 05 Feb 2023 20:49:41 +0100 Source: soapsnp Binary: soapsnp soapsnp-dbgsym Architecture: i386 Version: 1.03-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: soapsnp - resequencing utility that can assemble consensus sequence of geno Changes: soapsnp (1.03-5) unstable; urgency=medium . * Team upload. * Upstream download vanished * Standards-Version: 4.6.2 (routine-update) Checksums-Sha1: d74f84afa9688da09900530ddeff3ec5a7dd346d 392388 soapsnp-dbgsym_1.03-5_i386.deb 5b819cc7fbfd4c35fb7e39e7e5dd682b5f4a9ea2 5202 soapsnp_1.03-5_i386.buildinfo d5101f38e6651e2ab75d8ce1ee3af5905d9305ed 51344 soapsnp_1.03-5_i386.deb Checksums-Sha256: f96365c89fd4651cb7fd161e0f59f39067753418a86507a0b4aad8351a1abf27 392388 soapsnp-dbgsym_1.03-5_i386.deb 7c88cfb1c6dbeec19955b3f34b9228c4b8a6d35b69e306af7258f5ed520e8127 5202 soapsnp_1.03-5_i386.buildinfo 82adf623831ea0ac6b069f86645c7ae4db73d9570b9c79275b1ddd7494748051 51344 soapsnp_1.03-5_i386.deb Files: fb682fde927957ea3a9f89cf56f64f99 392388 debug optional soapsnp-dbgsym_1.03-5_i386.deb 6594849ffb89b47966edce7406ad9972 5202 science optional soapsnp_1.03-5_i386.buildinfo e03838c3da885704af71bde14302fc11 51344 science optional soapsnp_1.03-5_i386.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/soapsnp_1.03-5.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/soapsnp_1.03-5.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/soapsnp_1.03-5.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/soapsnp_1.03-5.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/i386/soapsnp_1.03-5_i386.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/soapsnp_1.03-5.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-01-21 22:17:43.190497792 +0000 +++ b2/build.log 2025-01-21 22:18:33.000250989 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Feb 23 16:40:12 -12 2026 -I: pbuilder-time-stamp: 1771908012 +I: Current time: Wed Jan 22 12:17:45 +14 2025 +I: pbuilder-time-stamp: 1737497865 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -26,54 +26,86 @@ dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/69376/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/55244/tmp/hooks/D01_modify_environment starting +debug: Running on ionos12-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 21 22:17 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/55244/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/55244/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='0f810fe096df44618e7cd7920446f7c1' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='69376' - PS1='# ' - PS2='> ' + INVOCATION_ID=3e5bd61354844c8e85b5b96897b0b257 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=55244 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu/pbuilderrc_HmCR --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu/b1 --logfile b1/build.log soapsnp_1.03-5.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu/pbuilderrc_ZYz4 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu/b2 --logfile b2/build.log soapsnp_1.03-5.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos6-i386 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/69376/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/55244/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -151,7 +183,7 @@ Get: 36 http://deb.debian.org/debian unstable/main i386 libboost-iostreams1.83-dev i386 1.83.0-4 [264 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 libboost-iostreams-dev i386 1.83.0.2+b2 [3588 B] Get: 38 http://deb.debian.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] -Fetched 44.1 MB in 2s (24.5 MB/s) +Fetched 44.1 MB in 1s (59.8 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19836 files and directories currently installed.) @@ -318,7 +350,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/soapsnp-1.03/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../soapsnp_1.03-5_source.changes +I: user script /srv/workspace/pbuilder/55244/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/55244/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/soapsnp-1.03/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../soapsnp_1.03-5_source.changes dpkg-buildpackage: info: source package soapsnp dpkg-buildpackage: info: source version 1.03-5 dpkg-buildpackage: info: source distribution unstable @@ -328,7 +364,7 @@ debian/rules clean dh clean dh_auto_clean - make -j22 clean + make -j10 clean make[1]: Entering directory '/build/reproducible-path/soapsnp-1.03' rm -f *.o soapsnp make[1]: Leaving directory '/build/reproducible-path/soapsnp-1.03' @@ -339,7 +375,7 @@ dh_autoreconf dh_auto_configure dh_auto_build - make -j22 "INSTALL=install --strip-program=true" + make -j10 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/soapsnp-1.03' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o call_genotype.o call_genotype.cc g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/soapsnp-1.03=. -fstack-protector-strong -Wformat -Werror=format-security -fomit-frame-pointer -O3 -ffast-math -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o chromosome.o chromosome.cc @@ -371,8 +407,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'soapsnp' in '../soapsnp_1.03-5_i386.deb'. dpkg-deb: building package 'soapsnp-dbgsym' in '../soapsnp-dbgsym_1.03-5_i386.deb'. +dpkg-deb: building package 'soapsnp' in '../soapsnp_1.03-5_i386.deb'. dpkg-genbuildinfo --build=binary -O../soapsnp_1.03-5_i386.buildinfo dpkg-genchanges --build=binary -O../soapsnp_1.03-5_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -380,12 +416,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/55244/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/55244/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/69376 and its subdirectories -I: Current time: Mon Feb 23 16:40:41 -12 2026 -I: pbuilder-time-stamp: 1771908041 +I: removing directory /srv/workspace/pbuilder/55244 and its subdirectories +I: Current time: Wed Jan 22 12:18:32 +14 2025 +I: pbuilder-time-stamp: 1737497912 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/soapsnp_1.03-5.diff: 67.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/soapsnp_1.03-5.diff.gz b2/build.log: 76.2% -- replaced with stdout Compressing the 1st log... b1/build.log: 77.3% -- replaced with stdout Tue Jan 21 22:18:34 UTC 2025 I: diffoscope 285 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_soapsnp_unstable_i386_1737497914 + touch /var/log/reproducible-builds/diffoscope_stamp_soapsnp_unstable_i386_1737497914 + RESULT=0 + systemd-run '--description=diffoscope on soapsnp/1.03-5 in unstable/i386' --slice=rb-build-diffoscope.slice -u rb-diffoscope-i386_11-42564 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu --run-session -c jenkins-reproducible-unstable-diffoscope-769dc33d-f5fd-48af-9a31-25e99ce461e6 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu/dbd-tmp-2tDEXr8 ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu/soapsnp_1.03-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu/soapsnp_1.03-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu/soapsnp_1.03-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu/b1/soapsnp_1.03-5_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu/b2/soapsnp_1.03-5_i386.changes' + false + set +x Running as unit: rb-diffoscope-i386_11-42564.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu/soapsnp_1.03-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu/soapsnp_1.03-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu/soapsnp_1.03-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu/b1/soapsnp_1.03-5_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.b8mEPfzu/b2/soapsnp_1.03-5_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.318s) 0.318s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.017s) 0.017s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 602ms CPU time consumed: 603ms ___ ___ __ _ _ __ ___ _ __ _ __ / __|/ _ \ / _` | '_ \/ __| '_ \| '_ \ \__ \ (_) | (_| | |_) \__ \ | | | |_) | |___/\___/ \__,_| .__/|___/_| |_| .__/ |_| |_| Tue Jan 21 22:18:35 UTC 2025 I: diffoscope 285 found no differences in the changes files, and a .buildinfo file also exists. Tue Jan 21 22:18:35 UTC 2025 I: soapsnp from unstable built successfully and reproducibly on i386. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-01-21 22:18:36] INFO: Starting at 2025-01-21 22:18:36.059304 [2025-01-21 22:18:36] INFO: Generating the pages of 1 package(s) [2025-01-21 22:18:36] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/i386/soapsnp didn't produce a buildlog, even though it has been built. [2025-01-21 22:18:36] INFO: Finished at 2025-01-21 22:18:36.433203, took: 0:00:00.373907 Tue Jan 21 22:18:36 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/i386/soapsnp.html Tue Jan 21 22:18:36 UTC 2025 I: Submitting .buildinfo files to external archives: Tue Jan 21 22:18:36 UTC 2025 I: Submitting 8.0K b1/soapsnp_1.03-5_i386.buildinfo.asc https://buildinfo.debian.net/5b819cc7fbfd4c35fb7e39e7e5dd682b5f4a9ea2/soapsnp_1.03-5_i386 Tue Jan 21 22:18:37 UTC 2025 I: Submitting 8.0K b2/soapsnp_1.03-5_i386.buildinfo.asc https://buildinfo.debian.net/10a01a5d3938bebd7d2fe4c9f9eb5c4b101cc16b/soapsnp_1.03-5_i386 Tue Jan 21 22:18:38 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Jan 21 22:18:38 UTC 2025 I: Done submitting .buildinfo files. Tue Jan 21 22:18:38 UTC 2025 I: Removing signed soapsnp_1.03-5_i386.buildinfo.asc files: removed './b1/soapsnp_1.03-5_i386.buildinfo.asc' removed './b2/soapsnp_1.03-5_i386.buildinfo.asc' 1737497918 i386 unstable soapsnp Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/soapsnp_1.03-5.rbuild.log: 73.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/soapsnp_1.03-5.rbuild.log.gz [2025-01-21 22:18:38] INFO: Starting at 2025-01-21 22:18:38.378638 [2025-01-21 22:18:38] INFO: Generating the pages of 1 package(s) [2025-01-21 22:18:38] INFO: Finished at 2025-01-21 22:18:38.851987, took: 0:00:00.473357 All cleanup done. Tue Jan 21 22:18:38 UTC 2025 - total duration: 0h 1m 40s. Tue Jan 21 22:18:38 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-KEigys4n, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1min 43.423s CPU time consumed: 7.297s