Running as unit: rb-build-i386_12-29739.service ==================================================================================== Thu Nov 21 02:20:13 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_i386_12) on jenkins, called using "ionos12-i386 ionos16-i386" as arguments. Thu Nov 21 02:20:13 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-veL1mKIu" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Nov 21 02:20:13 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos12-i386.debian.net is marked as down. Thu Nov 21 02:20:13 UTC 2024 - checking via ssh if ionos12-i386.debian.net is up. removed '/tmp/read-only-fs-test-ThnRaB' Thu Nov 21 02:20:13 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos16-i386.debian.net is marked as down. Thu Nov 21 02:20:13 UTC 2024 - checking via ssh if ionos16-i386.debian.net is up. removed '/tmp/read-only-fs-test-ylvWBv' ok, let's check if libssw is building anywhere yet… ok, libssw is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of libssw in experimental on i386 on jenkins now. 1st build will be done on ionos12-i386.debian.net. 2nd build will be done on ionos16-i386.debian.net. ============================================================================= Thu Nov 21 02:20:26 UTC 2024 I: starting to build libssw/experimental/i386 on jenkins on '2024-11-21 02:20' Thu Nov 21 02:20:26 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_12/29739/console.log 1732155626 i386 experimental libssw Thu Nov 21 02:20:26 UTC 2024 I: Downloading source for experimental/libssw=1.2.5-1 --2024-11-21 02:20:26-- http://cdn-fastly.deb.debian.org/debian/pool/main/libs/libssw/libssw_1.2.5-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2393 (2.3K) [text/prs.lines.tag] Saving to: ‘libssw_1.2.5-1.dsc’ 0K .. 100% 295M=0s 2024-11-21 02:20:26 (295 MB/s) - ‘libssw_1.2.5-1.dsc’ saved [2393/2393] --2024-11-21 02:20:26-- http://cdn-fastly.deb.debian.org/debian/pool/main/libs/libssw/libssw_1.2.5-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2393 (2.3K) [text/prs.lines.tag] Saving to: ‘libssw_1.2.5-1.dsc’ 0K .. 100% 295M=0s 2024-11-21 02:20:26 (295 MB/s) - ‘libssw_1.2.5-1.dsc’ saved [2393/2393] Thu Nov 21 02:20:26 UTC 2024 I: libssw_1.2.5-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libssw Binary: libssw1, libssw-dev, libssw-java, ssw-align Architecture: any Version: 1.2.5-1 Maintainer: Debian Med Packaging Team Uploaders: Sascha Steinbiss , Michael R. Crusoe Homepage: https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/libssw Vcs-Git: https://salsa.debian.org/med-team/libssw.git Testsuite: autopkgtest Testsuite-Triggers: build-essential, default-jdk-headless, libssw0, zlib1g-dev Build-Depends: debhelper-compat (= 13), default-jdk-headless , javahelper , help2man, zlib1g-dev, libsimde-dev, maven-repo-helper Package-List: libssw-dev deb libdevel optional arch=any libssw-java deb java optional arch=any profile=!nojava libssw1 deb libs optional arch=any ssw-align deb science optional arch=any Checksums-Sha1: 5967cc1977bc9f25a8ace5d6eadf3773a805975f 12384395 libssw_1.2.5.orig.tar.gz 6b18bb49beff0cedc593e16c90d771bbe701d346 15348 libssw_1.2.5-1.debian.tar.xz Checksums-Sha256: b294c0cb6f0f3d578db11b4112a88b20583b9d4190b0a9cf04d83bb6a8704d9a 12384395 libssw_1.2.5.orig.tar.gz a7795de8418161986d38c033425843108ef9e59f45e8124cd54416ce5e40a3ad 15348 libssw_1.2.5-1.debian.tar.xz Files: ec2f83cae4d4e6f4356d6edb9b60e659 12384395 libssw_1.2.5.orig.tar.gz 2b460ce4fc4285a31abd638f35f223d6 15348 libssw_1.2.5-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmTaOz8RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHxtQ/9EH+SYBLjscU7Q3TTc8K7+mSl5/OcfmlB a5y7TFeN+OXuVfMFPMT7/AaN8x/DZ6BOlTro4boP4BfDRyXEdAYQ1FT31axWsRP3 GhLKCyvFC9cGKYKorYWyxdtpkizbL10CtH3iQXqKjsDXZONFriuk6A6ISPM2qaOB ABsfmkgyP61t231X5LlWGppz0hRU7ddoz0QQgyDpeDFaaPNejYghzjF+koJtIMrV SptSe2Uk8adds/yTqIgiLKeHhHiM9vuikwQfzuMep8vYfb8kbkcZLhWSf4q5cxlZ FefPHpfaMCFLWFG3XF0PePAfIIQjU3NfQTN5BvPO8S+PTQYHkE4tHMpZkgShOT6G +qj5R1Zvtr7xlbsnJowHWqfwf98sLw/a8VpCzZtK6z23GpVTfS43aWqJU48kuDH3 qw3fVOlzFLt6S36x+hH4OvthKhkae7hmWFhfoX6EjkgVeNAVnLFilQCIm/g9fpik +t5WAzETDx47drIns+WJ6PmuaiourIXfIIZPTQQ2mK9VzDiGCpcH+KAnT3F9NbMg KH5z2kLm96oWPKVmUHS0L0DSjbdVH3v+uD5dcLja4E5SHHiRTqbwTqOWbCfDjPFU aqBLu1NosEZgMcDwZHbXgve8LOT+Pw5i7JJvRFm9K5cYKU67NVJSQgdOq2j5rWfx Xk7wYe2sqmI= =6JXn -----END PGP SIGNATURE----- Thu Nov 21 02:20:26 UTC 2024 I: Checking whether the package is not for us Thu Nov 21 02:20:26 UTC 2024 I: Starting 1st build on remote node ionos12-i386.debian.net. Thu Nov 21 02:20:26 UTC 2024 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Thu Nov 21 02:20:26 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos12-i386.debian.net is marked as down. Thu Nov 21 02:20:26 UTC 2024 - checking via ssh if ionos12-i386.debian.net is up. removed '/tmp/read-only-fs-test-DDcrUn' ==================================================================================== Thu Nov 21 02:20:27 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos12-i386, called using "1 libssw experimental /srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx 1.2.5-1" as arguments. Thu Nov 21 02:20:27 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-SHloHCmM" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Nov 21 02:20:27 UTC 2024 I: Downloading source for experimental/libssw=1.2.5-1 Reading package lists... NOTICE: 'libssw' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libssw.git Please use: git clone https://salsa.debian.org/med-team/libssw.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 12.4 MB of source archives. Get:1 http://cdn-fastly.deb.debian.org/debian experimental/main libssw 1.2.5-1 (dsc) [2393 B] Get:2 http://cdn-fastly.deb.debian.org/debian experimental/main libssw 1.2.5-1 (tar) [12.4 MB] Get:3 http://cdn-fastly.deb.debian.org/debian experimental/main libssw 1.2.5-1 (diff) [15.3 kB] Fetched 12.4 MB in 0s (49.6 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'libssw' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libssw.git Please use: git clone https://salsa.debian.org/med-team/libssw.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 12.4 MB of source archives. Get:1 http://cdn-fastly.deb.debian.org/debian experimental/main libssw 1.2.5-1 (dsc) [2393 B] Get:2 http://cdn-fastly.deb.debian.org/debian experimental/main libssw 1.2.5-1 (tar) [12.4 MB] Get:3 http://cdn-fastly.deb.debian.org/debian experimental/main libssw 1.2.5-1 (diff) [15.3 kB] Fetched 12.4 MB in 0s (49.6 MB/s) Download complete and in download only mode ============================================================================= Building libssw in experimental on i386 on ionos12-i386 now. Date: Thu Nov 21 03:20:28 CET 2024 Date UTC: Thu Nov 21 02:20:28 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Nov 20 14:20:28 -12 2024 I: pbuilder-time-stamp: 1732155628 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [libssw_1.2.5-1.dsc] I: copying [./libssw_1.2.5.orig.tar.gz] I: copying [./libssw_1.2.5-1.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Aug 14 14:33:35 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libssw_1.2.5-1.dsc: no acceptable signature found dpkg-source: info: extracting libssw in libssw-1.2.5 dpkg-source: info: unpacking libssw_1.2.5.orig.tar.gz dpkg-source: info: unpacking libssw_1.2.5-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying build_all_libs.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying rename_tool.patch dpkg-source: info: applying simde.patch dpkg-source: info: applying malloc I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/7621/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='experimental' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='649df34c73d24f31800ca0b6492b0a38' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='7621' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx/pbuilderrc_KZBg --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx/b1 --logfile b1/build.log libssw_1.2.5-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos12-i386 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/7621/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), default-jdk-headless, javahelper, help2man, zlib1g-dev, libsimde-dev, maven-repo-helper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19952 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on default-jdk-headless; however: Package default-jdk-headless is not installed. pbuilder-satisfydepends-dummy depends on javahelper; however: Package javahelper is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on maven-repo-helper; however: Package maven-repo-helper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} binfmt-support{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} dctrl-tools{a} debhelper{a} default-jdk-headless{a} default-jre-headless{a} devscripts{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dirmngr{a} dwz{a} fastjar{a} file{a} gettext{a} gettext-base{a} gnupg{a} gnupg-l10n{a} gpg{a} gpg-agent{a} gpgconf{a} gpgsm{a} groff-base{a} help2man{a} intltool-debian{a} jarwrapper{a} java-common{a} javahelper{a} libarchive-zip-perl{a} libassuan9{a} libb-hooks-op-check-perl{a} libclass-method-modifiers-perl{a} libclass-xsaccessor-perl{a} libclone-perl{a} libcom-err2{a} libdebhelper-perl{a} libdevel-callchecker-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libexpat1{a} libfile-dirlist-perl{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-touch-perl{a} libfile-which-perl{a} libgssapi-krb5-2{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libimport-into-perl{a} libio-html-perl{a} libio-pty-perl{a} libio-socket-ssl-perl{a} libipc-run-perl{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libksba8{a} liblcms2-2{a} libldap-2.5-0{a} liblocale-gettext-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libmodule-runtime-perl{a} libmoo-perl{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnpth0t64{a} libnsl2{a} libnspr4{a} libnss3{a} libparams-classify-perl{a} libpcsclite1{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librole-tiny-perl{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libsub-quote-perl{a} libtimedate-perl{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml2{a} m4{a} man-db{a} maven-repo-helper{a} media-types{a} netbase{a} openjdk-21-jdk-headless{a} openjdk-21-jre-headless{a} openssl{a} patchutils{a} perl-openssl-defaults{a} pinentry-curses{a} po-debconf{a} python3{a} python3-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} wdiff{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl debian-keyring dput dput-ng dupload equivs gnupg-utils gpg-wks-client krb5-locales libarchive-cpio-perl libasound2t64 libcups2t64 libdata-dump-perl libdistro-info-perl libfontconfig1 libfreetype6 libgit-wrapper-perl libgitlab-api-v4-perl libharfbuzz0b libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libio-compress-brotli-perl libjson-perl libldap-common liblist-compare-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libnamespace-clean-perl liboss4-salsa-asound2 libsasl2-modules libsoap-lite-perl libstring-shellquote-perl libxstring-perl licensecheck lintian lynx pristine-tar python3-apt python3-debian python3-magic python3-requests python3-unidiff python3-xdg strace unzip wget 0 packages upgraded, 130 newly installed, 0 to remove and 0 not upgraded. Need to get 168 MB of archives. After unpacking 443 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 binfmt-support i386 2.2.2-7 [65.8 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 liblocale-gettext-perl i386 1.07-7+b1 [15.4 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 libpython3.12-minimal i386 3.12.7-3 [814 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.6.4-1 [107 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 python3.12-minimal i386 3.12.7-3 [2236 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 python3-minimal i386 3.12.7-1 [26.8 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 media-types all 10.1.0 [26.9 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 netbase all 6.4 [12.8 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 tzdata all 2024b-3 [255 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 libcom-err2 i386 1.47.1-1+b1 [23.4 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Get: 15 http://deb.debian.org/debian unstable/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 libtirpc3t64 i386 1.3.4+ds-1.3+b1 [90.5 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 libnsl2 i386 1.3.0-3+b3 [42.7 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 readline-common all 8.2-5 [69.3 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 libreadline8t64 i386 8.2-5 [173 kB] Get: 22 http://deb.debian.org/debian unstable/main i386 libpython3.12-stdlib i386 3.12.7-3 [1964 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 python3.12 i386 3.12.7-3 [671 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 libpython3-stdlib i386 3.12.7-1 [9712 B] Get: 25 http://deb.debian.org/debian unstable/main i386 python3 i386 3.12.7-1 [27.8 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 openssl i386 3.3.2-2 [1387 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 ca-certificates all 20240203 [158 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 35 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.2-11 [95.6 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-4 [293 kB] Get: 38 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 39 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 40 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 41 http://deb.debian.org/debian unstable/main i386 autopoint all 0.22.5-2 [723 kB] Get: 42 http://deb.debian.org/debian unstable/main i386 ca-certificates-java all 20240118 [11.6 kB] Get: 43 http://deb.debian.org/debian unstable/main i386 dctrl-tools i386 2.24-3 [105 kB] Get: 44 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 45 http://deb.debian.org/debian unstable/main i386 libtool all 2.4.7-8 [517 kB] Get: 46 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 47 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 48 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 49 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 50 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 51 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 52 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-5+b1 [9583 kB] Get: 53 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 54 http://deb.debian.org/debian unstable/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 55 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 56 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 57 http://deb.debian.org/debian unstable/main i386 debhelper all 13.20 [915 kB] Get: 58 http://deb.debian.org/debian unstable/main i386 java-common all 0.76 [6776 B] Get: 59 http://deb.debian.org/debian unstable/main i386 liblcms2-2 i386 2.16-2 [171 kB] Get: 60 http://deb.debian.org/debian unstable/main i386 libjpeg62-turbo i386 1:2.1.5-3+b1 [171 kB] Get: 61 http://deb.debian.org/debian unstable/main i386 libnspr4 i386 2:4.36-1 [119 kB] Get: 62 http://deb.debian.org/debian unstable/main i386 libnss3 i386 2:3.106-1 [1504 kB] Get: 63 http://deb.debian.org/debian unstable/main i386 libpcsclite1 i386 2.3.0-3 [57.1 kB] Get: 64 http://deb.debian.org/debian unstable/main i386 openjdk-21-jre-headless i386 21.0.5+11-1 [43.2 MB] Get: 65 http://deb.debian.org/debian unstable/main i386 default-jre-headless i386 2:1.21-76 [3192 B] Get: 66 http://deb.debian.org/debian unstable/main i386 openjdk-21-jdk-headless i386 21.0.5+11-1 [85.4 MB] Get: 67 http://deb.debian.org/debian unstable/main i386 default-jdk-headless i386 2:1.21-76 [1124 B] Get: 68 http://deb.debian.org/debian unstable/main i386 libassuan9 i386 3.0.1-2 [62.4 kB] Get: 69 http://deb.debian.org/debian unstable/main i386 gpgconf i386 2.2.45-2 [127 kB] Get: 70 http://deb.debian.org/debian unstable/main i386 libksba8 i386 1.6.7-2+b1 [142 kB] Get: 71 http://deb.debian.org/debian unstable/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8 [20.6 kB] Get: 72 http://deb.debian.org/debian unstable/main i386 libsasl2-2 i386 2.1.28+dfsg1-8 [61.0 kB] Get: 73 http://deb.debian.org/debian unstable/main i386 libldap-2.5-0 i386 2.5.18+dfsg-3+b1 [200 kB] Get: 74 http://deb.debian.org/debian unstable/main i386 libnpth0t64 i386 1.6-3.1+b1 [18.3 kB] Get: 75 http://deb.debian.org/debian unstable/main i386 dirmngr i386 2.2.45-2 [396 kB] Get: 76 http://deb.debian.org/debian unstable/main i386 gnupg-l10n all 2.2.45-2 [705 kB] Get: 77 http://deb.debian.org/debian unstable/main i386 gpg i386 2.2.45-2 [573 kB] Get: 78 http://deb.debian.org/debian unstable/main i386 pinentry-curses i386 1.2.1-4+b1 [80.4 kB] Get: 79 http://deb.debian.org/debian unstable/main i386 gpg-agent i386 2.2.45-2 [269 kB] Get: 80 http://deb.debian.org/debian unstable/main i386 gpgsm i386 2.2.45-2 [275 kB] Get: 81 http://deb.debian.org/debian unstable/main i386 gnupg all 2.2.45-2 [376 kB] Get: 82 http://deb.debian.org/debian unstable/main i386 libfile-dirlist-perl all 0.05-3 [7600 B] Get: 83 http://deb.debian.org/debian unstable/main i386 libfile-which-perl all 1.27-2 [15.1 kB] Get: 84 http://deb.debian.org/debian unstable/main i386 libfile-homedir-perl all 1.006-2 [42.4 kB] Get: 85 http://deb.debian.org/debian unstable/main i386 libfile-touch-perl all 0.12-2 [8816 B] Get: 86 http://deb.debian.org/debian unstable/main i386 libio-pty-perl i386 1:1.20-1+b2 [35.8 kB] Get: 87 http://deb.debian.org/debian unstable/main i386 libipc-run-perl all 20231003.0-2 [101 kB] Get: 88 http://deb.debian.org/debian unstable/main i386 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get: 89 http://deb.debian.org/debian unstable/main i386 libclass-xsaccessor-perl i386 1.19-4+b4 [37.5 kB] Get: 90 http://deb.debian.org/debian unstable/main i386 libb-hooks-op-check-perl i386 0.22-3+b2 [10.7 kB] Get: 91 http://deb.debian.org/debian unstable/main i386 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get: 92 http://deb.debian.org/debian unstable/main i386 libdevel-callchecker-perl i386 0.009-1+b1 [16.2 kB] Get: 93 http://deb.debian.org/debian unstable/main i386 libparams-classify-perl i386 0.015-2+b4 [23.1 kB] Get: 94 http://deb.debian.org/debian unstable/main i386 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 95 http://deb.debian.org/debian unstable/main i386 libimport-into-perl all 1.002005-2 [11.3 kB] Get: 96 http://deb.debian.org/debian unstable/main i386 librole-tiny-perl all 2.002004-1 [21.4 kB] Get: 97 http://deb.debian.org/debian unstable/main i386 libsub-quote-perl all 2.006008-1 [21.8 kB] Get: 98 http://deb.debian.org/debian unstable/main i386 libmoo-perl all 2.005005-1 [58.0 kB] Get: 99 http://deb.debian.org/debian unstable/main i386 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 100 http://deb.debian.org/debian unstable/main i386 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 101 http://deb.debian.org/debian unstable/main i386 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 102 http://deb.debian.org/debian unstable/main i386 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 103 http://deb.debian.org/debian unstable/main i386 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 104 http://deb.debian.org/debian unstable/main i386 liburi-perl all 5.30-1 [105 kB] Get: 105 http://deb.debian.org/debian unstable/main i386 libhtml-parser-perl i386 3.83-1+b1 [101 kB] Get: 106 http://deb.debian.org/debian unstable/main i386 libhtml-tree-perl all 5.07-3 [211 kB] Get: 107 http://deb.debian.org/debian unstable/main i386 libclone-perl i386 0.47-1+b1 [14.0 kB] Get: 108 http://deb.debian.org/debian unstable/main i386 libio-html-perl all 1.004-3 [16.2 kB] Get: 109 http://deb.debian.org/debian unstable/main i386 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 110 http://deb.debian.org/debian unstable/main i386 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 111 http://deb.debian.org/debian unstable/main i386 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 112 http://deb.debian.org/debian unstable/main i386 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 113 http://deb.debian.org/debian unstable/main i386 perl-openssl-defaults i386 7+b2 [6720 B] Get: 114 http://deb.debian.org/debian unstable/main i386 libnet-ssleay-perl i386 1.94-2 [340 kB] Get: 115 http://deb.debian.org/debian unstable/main i386 libio-socket-ssl-perl all 2.089-1 [223 kB] Get: 116 http://deb.debian.org/debian unstable/main i386 libnet-http-perl all 6.23-1 [23.9 kB] Get: 117 http://deb.debian.org/debian unstable/main i386 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 118 http://deb.debian.org/debian unstable/main i386 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 119 http://deb.debian.org/debian unstable/main i386 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 120 http://deb.debian.org/debian unstable/main i386 libwww-perl all 6.77-1 [183 kB] Get: 121 http://deb.debian.org/debian unstable/main i386 patchutils i386 0.4.2-1 [79.6 kB] Get: 122 http://deb.debian.org/debian unstable/main i386 wdiff i386 1.2.2-6 [120 kB] Get: 123 http://deb.debian.org/debian unstable/main i386 devscripts all 2.24.3 [1079 kB] Get: 124 http://deb.debian.org/debian unstable/main i386 fastjar i386 2:0.98-7 [47.3 kB] Get: 125 http://deb.debian.org/debian unstable/main i386 help2man i386 1.49.3 [198 kB] Get: 126 http://deb.debian.org/debian unstable/main i386 jarwrapper all 0.80 [9692 B] Get: 127 http://deb.debian.org/debian unstable/main i386 javahelper all 0.80 [80.4 kB] Get: 128 http://deb.debian.org/debian unstable/main i386 libsimde-dev all 0.8.2-1 [465 kB] Get: 129 http://deb.debian.org/debian unstable/main i386 maven-repo-helper all 1.11 [142 kB] Get: 130 http://deb.debian.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Fetched 168 MB in 3s (49.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpipeline1:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19952 files and directories currently installed.) Preparing to unpack .../0-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package binfmt-support. Preparing to unpack .../1-binfmt-support_2.2.2-7_i386.deb ... Unpacking binfmt-support (2.2.2-7) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../2-liblocale-gettext-perl_1.07-7+b1_i386.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libpython3.12-minimal:i386. Preparing to unpack .../3-libpython3.12-minimal_3.12.7-3_i386.deb ... Unpacking libpython3.12-minimal:i386 (3.12.7-3) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../4-libexpat1_2.6.4-1_i386.deb ... Unpacking libexpat1:i386 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../5-python3.12-minimal_3.12.7-3_i386.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:i386 (3.12.7-3) ... Setting up libexpat1:i386 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20310 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_i386.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../04-libkrb5support0_1.21.3-3_i386.deb ... Unpacking libkrb5support0:i386 (1.21.3-3) ... Selecting previously unselected package libcom-err2:i386. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_i386.deb ... Unpacking libcom-err2:i386 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../06-libk5crypto3_1.21.3-3_i386.deb ... Unpacking libk5crypto3:i386 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../07-libkeyutils1_1.6.3-4_i386.deb ... Unpacking libkeyutils1:i386 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../08-libkrb5-3_1.21.3-3_i386.deb ... Unpacking libkrb5-3:i386 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:i386. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3 to /lib/i386-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3.0.0 to /lib/i386-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:i386 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:i386. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_i386.deb ... Unpacking libnsl2:i386 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:i386. Preparing to unpack .../14-libreadline8t64_8.2-5_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:i386. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_i386.deb ... Unpacking libpython3.12-stdlib:i386 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_i386.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../17-libpython3-stdlib_3.12.7-1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.12.7-1) ... Setting up python3-minimal (3.12.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21372 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.7-1_i386.deb ... Unpacking python3 (3.12.7-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.3.2-2_i386.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3+b1_i386.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.22.5-2_i386.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../008-libuchardet0_0.0.8-1+b2_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-5_i386.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40.2-11_i386.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package man-db. Preparing to unpack .../011-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../012-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../013-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../014-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../015-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../016-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../017-ca-certificates-java_20240118_all.deb ... Unpacking ca-certificates-java (20240118) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../018-dctrl-tools_2.24-3_i386.deb ... Unpacking dctrl-tools (2.24-3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../019-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../020-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../021-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... 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Setting up java-common (0.76) ... Setting up libdynaloader-functions-perl (0.004-1) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up libio-pty-perl (1:1.20-1+b2) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libclone-perl:i386 (0.47-1+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.20) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:i386 (1:5.45-3+b1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up perl-openssl-defaults:i386 (7+b2) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libcom-err2:i386 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:i386 (0.192-4) ... Setting up libkrb5support0:i386 (1.21.3-3) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Nov 21 02:21:06 UTC 2024. Universal Time is now: Thu Nov 21 02:21:06 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libjpeg62-turbo:i386 (1:2.1.5-3+b1) ... Setting up libnspr4:i386 (2:4.36-1) ... Setting up gnupg-l10n (2.2.45-2) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.22.5-2) ... Setting up binfmt-support (2.2.2-7) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libb-hooks-op-check-perl:i386 (0.22-3+b2) ... Setting up libipc-run-perl (20231003.0-2) ... Setting up libpcsclite1:i386 (2.3.0-3) ... Setting up libk5crypto3:i386 (1.21.3-3) ... Setting up libsasl2-2:i386 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up libtimedate-perl (2.3300-2) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b2) ... Setting up libassuan9:i386 (3.0.1-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up netbase (6.4) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b4) ... Setting up libkrb5-3:i386 (1.21.3-3) ... Setting up libfile-dirlist-perl (0.05-3) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up openssl (3.3.2-2) ... Setting up readline-common (8.2-5) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liburi-perl (5.30-1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up libfile-touch-perl (0.12-2) ... Setting up dctrl-tools (2.24-3) ... Setting up libnet-ssleay-perl:i386 (1.94-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up pinentry-curses (1.2.1-4+b1) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.22.5-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up jarwrapper (0.80) ... Setting up libtool (2.4.7-8) ... Setting up libnet-http-perl (6.23-1) ... Setting up libnss3:i386 (2:3.106-1) ... Setting up libdevel-callchecker-perl:i386 (0.009-1+b1) ... Setting up libldap-2.5-0:i386 (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up patchutils (0.4.2-1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libgssapi-krb5-2:i386 (1.21.3-3) ... Setting up libreadline8t64:i386 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-5) ... Setting up libhtml-parser-perl:i386 (3.83-1+b1) ... Setting up gpgconf (2.2.45-2) ... Setting up ca-certificates-java (20240118) ... No JRE found. Skipping Java certificates setup. Setting up libio-socket-ssl-perl (2.089-1) ... Setting up gpg (2.2.45-2) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up gpg-agent (2.2.45-2) ... Setting up openjdk-21-jre-headless:i386 (21.0.5+11-1) ... update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libtirpc3t64:i386 (1.3.4+ds-1.3+b1) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:i386 (0.015-2+b4) ... Setting up gpgsm (2.2.45-2) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up dirmngr (2.2.45-2) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libnsl2:i386 (1.3.0-3+b3) ... Setting up gnupg (2.2.45-2) ... Setting up libpython3.12-stdlib:i386 (3.12.7-3) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:i386 (3.12.7-1) ... Setting up python3 (3.12.7-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.77-1) ... Setting up devscripts (2.24.3) ... Setting up javahelper (0.80) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates-java (20240118) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:BJCA_Global_Root_CA1.pem Adding debian:BJCA_Global_Root_CA2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:CommScope_Public_Trust_ECC_Root-01.pem Adding debian:CommScope_Public_Trust_ECC_Root-02.pem Adding debian:CommScope_Public_Trust_RSA_Root-01.pem Adding debian:CommScope_Public_Trust_RSA_Root-02.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustAsia_Global_Root_CA_G3.pem Adding debian:TrustAsia_Global_Root_CA_G4.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up openjdk-21-jdk-headless:i386 (21.0.5+11-1) ... update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jwebserver to provide /usr/bin/jwebserver (jwebserver) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up default-jre-headless (2:1.21-76) ... Setting up maven-repo-helper (1.11) ... Setting up default-jdk-headless (2:1.21-76) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20240118) ... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libssw-1.2.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libssw_1.2.5-1_source.changes dpkg-buildpackage: info: source package libssw dpkg-buildpackage: info: source version 1.2.5-1 dpkg-buildpackage: info: source distribution experimental dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --with javahelper --with jh_maven_repo_helper debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/libssw-1.2.5' rm -f debian/libssw*install debian/libssw*links debian/ssw-align.1 dh_auto_clean --sourcedirectory src cd src && make -j11 clean make[2]: Entering directory '/build/reproducible-path/libssw-1.2.5/src' rm -f ssw.o ssw_cpp.o ssw-align libssw.so.1 example_c example_cpp libsswjni.so *.jar ssw/Aligner.class ssw/Alignment.class *~ libssw.a make[2]: Leaving directory '/build/reproducible-path/libssw-1.2.5/src' make[1]: Leaving directory '/build/reproducible-path/libssw-1.2.5' jh_clean Duplicate specification "u=s" for option "u" dh_clean debian/rules binary dh binary --with javahelper --with jh_maven_repo_helper dh_update_autotools_config dh_autoreconf jh_linkjars debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/libssw-1.2.5' dh_auto_build --sourcedirectory src -- default java cd src && make -j11 "INSTALL=install --strip-program=true" default java make[2]: Entering directory '/build/reproducible-path/libssw-1.2.5/src' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libssw-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -shared -rdynamic -Wl,-soname,libssw.so.1 -o libssw.so.1 ssw.c ssw.h ssw_cpp.h ssw_cpp.cpp -Wl,-z,relro -Wl,-z,now cc -c -o ssw.o ssw.c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libssw-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -pipe -O2 g++ -c -o ssw_cpp.o ssw_cpp.cpp -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libssw-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 javac ssw/Aligner.java javac ssw/Alignment.java cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libssw-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -pipe -O2 -I"/usr/lib/jvm/default-java/include" -I"/usr/lib/jvm/default-java/include/linux" -I/usr/lib/jvm/default-java/include/ -I/usr/lib/jvm/default-java/include/linux -fPIC -shared -rdynamic -o libsswjni.so sswjni.c ssw.c -Wl,-z,relro -Wl,-z,now ssw.c: In function 'sw_sse2_byte': ssw.c:231:17: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 231 | __m128i vZero = _mm_set1_epi32(0); | ^~~~~ ssw.c: In function 'sw_sse2_byte': ssw.c:231:17: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 231 | __m128i vZero = _mm_set1_epi32(0); | ^~~~~ ssw.c: In function 'alignment_end* sw_sse2_byte(const int8_t*, int8_t, int32_t, int32_t, uint8_t, uint8_t, const __m128i*, uint8_t, uint8_t, int32_t)': ssw.c:266:20: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 266 | vH = _mm_slli_si128 (vH, 1); /* Shift the 128-bit value in vH left by 1 byte. */ | ^ jar cvf ssw.jar ssw/Aligner.class ssw/Alignment.class added manifest adding: ssw/Aligner.class(in = 2486) (out= 1527)(deflated 38%) adding: ssw/Alignment.class(in = 1029) (out= 602)(deflated 41%) ar rcs libssw.a ssw.o ssw_cpp.o cc -o example_c ssw.o example.c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libssw-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -pipe -O2 -Wl,-z,relro -Wl,-z,now -lm -lz g++ -o example_cpp example.cpp ssw.o ssw_cpp.o -g -O2 -ffile-prefix-map=/build/reproducible-path/libssw-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lz cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libssw-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -pipe -O2 -o ssw-align main.c kseq.h -L. -lssw -lm -lz -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/libssw-1.2.5/src' make[1]: Leaving directory '/build/reproducible-path/libssw-1.2.5' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libssw-1.2.5' LD_PRELOAD="$LD_PRELOAD /build/reproducible-path/libssw-1.2.5/src/libssw.so" src/ssw-align -c demo/ref.fa demo/1k.fa ERROR: ld.so: object '/build/reproducible-path/libssw-1.2.5/src/libssw.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. target_name: chr1 query_name: chr1 optimal_alignment_score: 2002 suboptimal_alignment_score: 1000 strand: + target_begin: 1 target_end: 1001 query_begin: 1 query_end: 1001 Target: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 Target: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 Target: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 Target: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 Target: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 Target: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 Target: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 Target: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 Target: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 Target: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 Target: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 Target: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 Target: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 Target: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 Target: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 Target: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 Target: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 ||||||||||||||||||||||||||||||||||||||||| Query: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 target_name: chr2 query_name: chr1 optimal_alignment_score: 312 suboptimal_alignment_score: 311 strand: + target_begin: 4437430 target_end: 4438470 query_begin: 9 query_end: 971 Target: 4437430 TTGAT-TCCACAGATTCCAATAGAATAGTTTGAAGATGGAACAATTGAGAATTCTGAATG 4437488 ||*|| *|||| || | |||| ||||*|**||| |**||*|*| ||**||| ||| Query: 9 TTAATCGCCAC-GA--C--ATAG--TAGTATTTAGA-GTTACTAGT---AAGCCTG-ATG 56 Target: 4437489 ---CTAAGCTAAT--TAGATATGTTTTCTTTGAAGGAAAACTACATTGTATTATTTTGCC 4437543 |||**| ||| |||*| | ||*||||| |||| | *|||||*|*|||**| Query: 57 CCACTACAC-AATTCTAGCT-T-TTCTCTTT--AGGA----T-GATTGTTTCATTCAG-- 104 Target: 4437544 TCCTCCCTCCTCCTAGAAGCCTT----TAAAATTCATGCATCATTTTAAAAGTTTTGAAA 4437599 ||*|**|| ||**|||||**|*| *|||||| || *|*||**||||| ||| || Query: 105 TCTTATCT-CTTTTAGAAAACATAGGAAAAAATT-AT--TTAATAATAAAA-TTT--AA- 156 Target: 4437600 TTTTTCAAGATTATGTTTAA-GTAT--ATTA-AATATTTTGTTCAGTCATCCCAATTAGT 4437655 ||**||| | ||| || |||| *||| ||*| *|||| |*||*||| || Query: 157 -TTGGCAA-A--ATG---AAGGTATGGCTTATAAGA--GTGTT------TTCCTATT-GT 200 Target: 4437656 TTTCAATG--G----CCCT-TTCCATTTAAAGAGTTTGGACATTCCATATAAAAAAG-AC 4437707 |||||*|| | |*|| ||| ||||*|**|*||||| *||| |**|****| |* Query: 201 TTTCAGTGTAGGACTCACTGTTC----TAAATAACTGGGACA-CCCA-AGGATTCTGTAA 254 Target: 4437708 AATGTCATCTACA-TTTTC-TTTGTTTT--CT---T---AATT-AT----ATCTTTTCCT 4437752 ||||*|||| || ||*|| |||*|*|| || | |||| || ||*|*|||*| Query: 255 AATGCCATC--CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCACATGTATTCAT 312 Target: 4437753 TTTTACAAATTTCTTAA-AAA-TAG-GTGTAAGATCTCTGATTTAACCTATGTGCGT--- 4437806 ||| |||||*|| ||| ||| *||| |||**|||| *||||**|*|| ||*| Query: 313 TTT------TTTCTAAACAAATTAGCATGT-AGAATTCTG-GTTAAAATTTG-GCATAGA 363 Target: 4437807 -C------TTAATTTTTCA----GCTTC---T--CTGTCATT---TTATT-AGATGTTTT 4437846 | *||*||||||| ||**| | |||||||| |*||| ||| Query: 364 ACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGA------ 417 Target: 4437847 TATTGT-TTTTAA------TTACTAAATTAATCTTAATCTATG-CTTATTATATCATTCT 4437898 ||*|| *||||| *||*||||*|*|| **||*|*||| |**|**|*|||**||| Query: 418 -ATGGTGATTTAACAAAGGATAATAAAGTTAT-GAAACCAATGCCACAAAACATCTGTCT 475 Target: 4437899 CCATTAC--GT-TATGGATACAACAACT-TG-GTGAATGTTTCTG----AGATTAACACT 4437949 | |*|| || |*||**| *| || |||**|||*|*|| |||***|*|** Query: 476 C--TAACTGGTGTGTGTGT-------GTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGA 526 Target: 4437950 AAAAATATTTAACAATCTCTCTCATTTTTATC----TTTTC-TTTCTTTTTCTCTTTGTC 4438004 *|*||*|||| ||*||*||| |||***|*|| |*||| |||||||||| |||| *| Query: 527 GAGAAAATTT--CACTCCCTC-CATAAATCTCACAGTATTCTTTTCTTTTTC-CTTT-CC 581 Target: 4438005 TTT-CTCACTCTCTATTTATCCTGTTACATCTTTGCTTCTATCTCTTTCTCTGTTTTTTT 4438063 ||| ||**|||| |*|||*| ||**|| |||||| || ||||| *|||**|| Query: 582 TTTCCTTGCTCT-TCTTTCT-CTCCTA-----TTGCTT---TC-CTTTC---ATTTCCTT 627 Target: 4438064 TTTTTAATATTTAAATAATGCTTCTGTCTGAGGAGGTTAAGAAGTGAAAGAAGACATTGT 4438123 *|**|||*|***|||||| |**|*| || || || | ||*||*|*|| Query: 628 CTCATAAAAGAAAAATAA-----CAATAT-AG------AA-AA-T--AACAAAATAT--- 668 Target: 4438124 GAGATGGAGAATCTTTATTAAGATAGAAG---AC--AAAGAGGGGATGAT-----GTGGA 4438173 ||||||**||*|||| ||||*|| *||| || ||| |*|**||*|| |||| Query: 669 -AGATGGTCAACCTTT-TTAATAT-TAAGGTTACCTAAA-ATGCCATTATCCAAAGTGG- 723 Target: 4438174 CACTT-TC-AG-GATG-TGGAATGGT---TACATACATTATT---CTGT-TA-TCACAAG 4438221 || || || |||| || || || |||*|||| |||| |*|| || ||| || Query: 724 ---TTCTCTAGAGATGCTG--AT-GTATATACTTACA-TATTTTACAGTGTATTCA-AA- 774 Target: 4438222 GTTAGCTAA-ACTCTCTTTCATAA-A-ATCTCTCTTGTTTCTTACTCCCTAAATCTCAAA 4438278 || || |*|*|*||*||||| | ||*|| || |||*|*|| | || || Query: 775 --TA---AAGAGTATATTACATAAGACATATC-CT--TTTGTAAC-C---AA--CT---- 816 Target: 4438279 TAAGTGACTAAAAAATGCCTGGA--TGACCCCAAACAGTAAGAATAGCTTGTA-GGTCTC 4438335 |**||*|*|||*||*|**||||| ||*|**||||| *|| ||| | |||| *||||* Query: 817 TTTGTCATTAACAATTTACTGGACTTGTCAACAAAC-CTA--AAT--C-TGTATCGTCTA 870 Target: 4438336 TGAAG---ATGTTATCTTTTGCCCTGGGAAGGTGGATTCCTATACTAACACCTGCACTTG 4438392 |*|*| |*|| ||*||| |||*| ||*|| || ||*|*||*||| || Query: 871 TAATGGCTACGT--TCATTT----TGGTA---TGAAT--CT-TAATTACCCCT----TT- 913 Target: 4438393 AAAAGGTGAACAAGATAATTTTGTATTTATTTTCTCACTA--CCACTGCAGGTAGCATGG 4438450 *|| | ||*||| ||*|*||||||||| || *|||| | *|| *||| Query: 914 -----CTG--C---ATTATT---TAATGATTTTCTCA-TATGTCACT-C--TTA-AATG- 954 Target: 4438451 GACACTTCTTTATTATTCAC 4438470 *||||| |*|||*||||| Query: 955 --TACTTC-TAATTTTTCAC 971 target_name: chr3 query_name: chr1 optimal_alignment_score: 291 suboptimal_alignment_score: 289 strand: + target_begin: 680970 target_end: 682002 query_begin: 9 query_end: 998 Target: 680970 TTAAATTGTCA--ACATGGTA-TATATGAAATGAATTGGGTTTATAATAGTAAACCAATC 681026 || |||*|*|| ||||*||| ||| |*| || || ||*||||||*|| |* Query: 9 TT-AATCGCCACGACATAGTAGTAT-TTA---GA-----GT---TACTAGTAAGCC--TG 53 Target: 681027 TTG-CATTCCTAAAA---TA--AATCCTATTTAG--TTATCGT--------GTGTTATTT 681070 *|| ||*|*| |*|| || **|*||*||||| |*||*|| ||*||| |* Query: 54 ATGCCACTAC-ACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTA-TC 111 Target: 681071 TCTT----AATACAGTGTTGGATTAAGTTTGCTATTTTTTATTTTAAAATTTTACATTAT 681126 |||| ||*||| |*|||**||*| || |||*||**||||| |||| || Query: 112 TCTTTTAGAAAACA---TAGGAAAAAAT----TA--TTTAATAATAAAA-TTTA----AT 157 Target: 681127 TTTCTTCAGTGA---TATTGACCTGT---AGTTTTCTTTCATTATACTGTTTTATCAGAT 681180 |**| **|*||| || ||*|*|*| |||*| |||| *||| ||||| |||| | Query: 158 TGGC-AAAATGAAGGTA-TGGCTTATAAGAGTGT--TTTC-CTAT--TGTTT--TCAG-T 207 Target: 681181 TTAGGTATCAGTGTTAT-AGTTTCT---TCATGAAAGGAAT---TAAGATGTTTTCCTTC 681233 *||||**|||*||||*| |*|**|| *||***|||||*| |||*||| ||*|| Query: 208 GTAGGACTCACTGTTCTAAATAACTGGGACACCCAAGGATTCTGTAAAATG----CCATC 263 Target: 681234 C-CTT-TCA---ATGTT------CTGAATAATCATACAGCAT-TA-TGACTATCTGCCAT 681280 | *|| ||| ||*|| ||*||*|*||||*|| ||| || |*|*|*|*| | Query: 264 CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCA-CATGTATTCATTTTTT----T 318 Target: 681281 TTAAATC--TTTAGAAT----AATTACCTTGTGAAACTATGTGGGCTTGGTGCTATTTTG 681334 *|||| | *||||*|| |||| ||*||*||| || |*|||*|*|**| | ***| Query: 319 CTAAA-CAAATTAGCATGTAGAATT--CTGGTTAAA--AT-TTGGCATAGAAC-A-CCCG 370 Target: 681335 TGTAGTATTTATC-TAATTGTTTCCTATA--TTTC-TT--CTA--TGAAATTGGTTGATT 681386 *||| | |||*|| ||| ||***||*||| |*|| || ||| |||*|*||| ||||| Query: 371 GGTA-T-TTTTTCATAA-TGCACCCAATAACTGTCATTCACTAATTGAGAATGG-TGATT 426 Target: 681387 TAATCTTTCTAACACTAATAAGATTAATTTGAGTAAACTTCATTTCTCTAGAAAATAATT 681446 ||| |*||***||||||**||| || |||| ||*|*| | |*||||*| | Query: 427 TAA-----CAAAGGATAATAAAGTTA---TG---AAAC--CAATGC-C-ACAAAACA--T 469 Target: 681447 AATTCATCAAATTAAATCAAATTTGAAATTTGATTTCAAATTTATTTGTGTCAAAGTAA- 681505 ***|| || |||*|****|*|| |*|| |*| *|*|*|*|||||****|||| Query: 470 CTGTC-TC----TAACTGGTGTGTG---TGTG-TGT---GTGTGTGTGTGTGTGTGTAAG 517 Target: 681506 A-GGAG-G--------TTTC-CT--GT-CATTTTAAAATTCTC----TGTTGTTTTAATA 681547 | |||| | |||| || *| || |||| |||| |*||*|||| *|* Query: 518 AGGGAGAGAGAGAAAATTTCACTCCCTCCA---TAAA--TCTCACAGTATTCTTTT-CTT 571 Target: 681548 GTAACTT--GTTT-CTTATTATTTATAACTTTAT---ATATT--TGTACTT---TTTCCT 681596 *|**||| *||| |||**|*|| ||||*| *|||| |*|*||| ||||| Query: 572 TTTCCTTTCCTTTCCTTGCTCTT-----CTTTCTCTCCTATTGCTTTCCTTTCATTTCC- 625 Target: 681597 TTTTTATCAAATG--AACT--GAGTTT------TAAC-----ATCGCAT--TTAA---TT 681636 ||*|*|| |||*| ||*| *|*|*| |||| ||*| || |*|| || Query: 626 TTCTCAT-AAAAGAAAAATAACAATATAGAAAATAACAAAATATAG-ATGGTCAACCTTT 683 Target: 681637 TTAATTATCTAATCTAAATCTAAAAGCTGATATTTGATTCAA-----TTGTC-AGAAATC 681690 |||| ||| |||**| *|*|||||| ||**||| ||*||| ||*|| |||*|| Query: 684 TTAA-TAT-TAAGGT-TACCTAAAA--TGCCATT--ATCCAAAGTGGTTCTCTAGAGAT- 735 Target: 681691 TCTTAAGTATATTGGGATCAACTTGGAAAAGTAAATTGACTTTAAACAGTACACTT--TA 681748 *||*|*|||||| |||| |*| | ||| || |||||**| || *| Query: 736 GCTGATGTATAT--------ACTT--ACA--T--ATT---TT---ACAGTGTA-TTCAAA 774 Target: 681749 TGAACTTTAAATTACAGATCAGATAT--TTTTAGTAA--AA-TTTTATCCAAACTAAGAT 681803 |*||***||*||||||*|**|*|||| |||| |||| || ||||*|| |*||| Query: 775 TAAAGAGTATATTACATAAGACATATCCTTTT-GTAACCAACTTTTGTC---ATTAA--- 827 Target: 681804 GCAATATGAGTATAATCACTGATTCAA-AAAGCTTCCTTTAGTGAGCATGAAATATC-TC 681861 |||| |*|*|**|*| || |||| ||| || || *|*| || |||| | Query: 828 -CAAT-TTACTGGACT---TG--TCAACAAA----CC--TA--AATC-TG---TATCGT- 867 Target: 681862 ACTATTTTAAT---T---TTAATATTGATTGTGTGTTAAAATAATAATAATTGCATTAT- 681914 ||| |||| | ||*||*||| ||*|| |||**||||*|***|*||*| Query: 868 -CTA---TAATGGCTACGTTCATTTTG---GTATG----AATCTTAATTACCCCTTTCTG 916 Target: 681915 -ATTATTGATAATGTGTATTCTTGTCATGTTTCCATTCTTACTGGAAATG--CCTCCAGT 681971 |||||| ||||| ||| ||*||||*|*| ||*|||| ||||| |*||*|*| Query: 917 CATTATT--TAATG---ATT-TTCTCATATGT-CACTCTT-----AAATGTACTTCTAAT 964 Target: 681972 GTTTC----TCCATCAAATAGTAT-ACTGGCTCTAA 682002 *|||| |*|||||*||| || |*|||*||*|| Query: 965 TTTTCACTTTACATCACATA--ATGAATGGATCCAA 998 target_name: chr4 query_name: chr1 optimal_alignment_score: 280 suboptimal_alignment_score: 273 strand: + target_begin: 47000 target_end: 48059 query_begin: 2 query_end: 1001 Target: 47000 AAACATCTT-ATAGCTACTGGATTCTTTTTTGCCTATGTATTTA----TA-TATGT--G- 47050 |||||**|| ||*||*|| || | *|*| || ||||||| || || || | Query: 2 AAACAGGTTAATCGCCAC--GA--C---ATAG--TA-GTATTTAGAGTTACTA-GTAAGC 50 Target: 47051 CTGTAT----CTATGTAATGTCTA--TTTTTATAAAGCTCTAATTGACCTAGAGGAAAAT 47104 ||| || |||***||| |||| |||| |||| || ||| || Query: 51 CTG-ATGCCACTACACAAT-TCTAGCTTTT-------CTCT--TT-------AGG---AT 89 Target: 47105 GA--GTTT--TTGAATCAAATAT-TTTTTGAAGGGAAAGTAAAAACTGTGGTACATTGAA 47159 || |||| ||*|*||**||*| ||||*|||***|*||*||||| ||| | Query: 90 GATTGTTTCATTCAGTCTTATCTCTTTTAGAAAACATAGGAAAAA---------ATT-A- 138 Target: 47160 GTTCACATGACTAATCATTGAGAAATAAAAACAGACTTAGCAATTATTGGTAAAAAGCAG 47219 || |||| ||||||| || |*|||||*||||*|*|| Query: 139 -TT--------TAAT--------AATAAAA------TT-----TAATTGGCAAAATGAAG 170 Target: 47220 --ATG--TTAAAA-----TATAC--ATTTTTGTTCAGGGTTAAAGGA-T---TGTTCTGA 47264 ||| |||*|| |*|*| |||*|| |||||*|| |||| | ||||||*| Query: 171 GTATGGCTTATAAGAGTGTTTTCCTATTGTT-TTCAGTGT---AGGACTCACTGTTCTAA 226 Target: 47265 ATTA----GATA---A--GATAAAGCTAAAAGTTTAAACAAGTTATAA---AAAGTTTCT 47312 ||*| ||*| | |||***| ||||| |***|*|*||||||*| |*|*|**|| Query: 227 ATAACTGGGACACCCAAGGATTCTG-TAAAA-TGCCATCCAGTTATCATTTATATTCCCT 284 Target: 47313 A--T-AAAATTCATCTTGCCA-AAGAA---ATTTTGTCCATGAACATTAAATTACGAAAG 47365 | | ||||||||| | || |*|*| |||||*|*| |*||| |||||| |*|*| Query: 285 AACTCAAAATTCAT-T---CACATGTATTCATTTTTTTC-TAAAC---AAATTA-GCATG 335 Target: 47366 GTATTATATGTTTTTTTGGT--AAATTAAGCATTTAAATAATAGCACAACAAGGTA---- 47419 ||*| *||*|||| |||||**|| ||||*|||*|**|||| Query: 336 ----TAGA----ATTCTGGTTAAAATTTGGC---------ATAGAACACCCGGGTATTTT 378 Target: 47420 CTCTTAAGGCAC----TAATCTGCTCTTTAGCAAAATTTGTAAA--GTG--TTATAAACG 47471 *||*|||*|||| ||| ||| ||*|| ||**|*|||**|| ||| |||**||*| Query: 379 TTCATAATGCACCCAATAA-CTG-TCATT--CACTAATTGAGAATGGTGATTTAACAAAG 434 Target: 47472 GGTTTTACTTTTGTAAATTTTTTGAAACAATTGTGGCAAAA------TAAATAACATGGT 47525 | | |**|||| *||*||||||*|*||***||||| |***|||| |||| Query: 435 G-----A---TAATAAA-GTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC-TGGT 484 Target: 47526 AATCTG-GAAT-TCTATTTCATAACATCAAGTGT-TTTAA-------ACCTCTAACATTT 47575 *|*|| |**| |*|*|*| *| *| |||| |*||| |*****||*|||| Query: 485 -GTGTGTGTGTGTGTGTGT-GT---GT---GTGTGTGTAAGAGGGAGAGAGAGAAAATTT 536 Target: 47576 C-TTC---CCA-AAATCAAAC----TTCAGTTTCAAAATTGT--CTTTCCT---CGTGC- 47620 | *|| ||| |||||**|| ||| *|||| ||*| ||||||| |*||| Query: 537 CACTCCCTCCATAAATCTCACAGTATTC-TTTTC----TTTTTCCTTTCCTTTCCTTGCT 591 Target: 47621 CTGACTTT-TGAATGCTACAGAGGGC---CCCTGGAGTATCC-------AAAAGAGAGGT 47669 || *|||| | || |**|**|| ||*|**| |*||| ||||||*|**| Query: 592 CT-TCTTTCT-----CT-CCTATTGCTTTCCTTTCA-TTTCCTTCTCATAAAAGAAAAAT 643 Target: 47670 AAACTGGATTATTTGACATATTTAGTTACATGGGATTGCCAATCTTCTTTAGGTTATAT- 47728 ||| |*|||***|*|||***|**||*| |||*|*|||*||| |||| |||| Query: 644 -AAC---AATATAGAAAATAACAAAATATA---GATGGTCAACCTT-TTTA----ATATT 691 Target: 47729 -AGGTTA--TATTTTG--AT-----AAA-T-ATTCTATAGGTTATATTTTGATAAATGAT 47776 |||||| ||***|| || ||| | *||||*||| |*||**||||**|| || Query: 692 AAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTCTAG---AGATGCTGATGTAT-AT 747 Target: 47777 ACTAATATATGTTCCAAAATTGTATGAGATTTCTAATGTCTGAGTATATGCTATCAAAAT 47836 |||*|*||||*|| |*|*|||| |||*||| ***|||||||| || || Query: 748 ACTTACATATTTT---ACAGTGTA------TTCAAAT-AAAGAGTATAT--TA-CA---- 790 Target: 47837 TAAG--GTTT--TTATGT---TAAGTTATTGT-A--AAC----CACAGAGA-TT---ATC 47878 |||| *|*| ||*||| *||*|| |||| | ||| *||*| || || |*| Query: 791 TAAGACATATCCTTTTGTAACCAACTT-TTGTCATTAACAATTTACTG-GACTTGTCAAC 848 Target: 47879 AAACTTCTTTGTCAACTGTGTTTCTGACTATAA---CTACCCTGGACATTTTGTTATTCA 47935 |||| || ||*|*|||*|| |*|||||| |||| |**|||||||*||| Query: 849 AAAC--CT-----AAATCTGTATC-GTCTATAATGGCTAC---GTTCATTTTGGTAT--- 894 Target: 47936 AAGACAATTGTCTTGTTTAGATCCTTTTCAAGAGATAGTTTATAAGA--AGCTACAGAAC 47993 || | ||||**|| |*||*|||| *| *||**|||| |*|| **|| ||*| Query: 895 --GA-A----TCTTAATT--ACCCCTTTC-TG-CATTATTTA-ATGATTTTCT-CATA-- 939 Target: 47994 TGTGACAGGTGCTCTCAAATGCAGTTTTCCAA---ATAACTTTGGAGATCATGACAT--T 48048 ||| || ||||*|||||*| *|||*|| *|*||||| | |||*|||| | Query: 940 TGT--CA----CTCTTAAATGTA--CTTCTAATTTTTCACTTT--A---CATCACATAAT 986 Target: 48049 GAA---AT--AAAGTA 48059 ||| || ||| || Query: 987 GAATGGATCCAAA-TA 1001 target_name: chr5 query_name: chr1 optimal_alignment_score: 230 suboptimal_alignment_score: 199 strand: + target_begin: 8806 target_end: 9723 query_begin: 11 query_end: 974 Target: 8806 AATGGCCAGGGCACTGAGGAG-CTGTGGAAGAACTGGGGAAATCACCGAAACCCAGTAC- 8863 |||*||||*|*|| | ||*|| *|*|*||***||| *|*||*| |*| |**|||*||| Query: 11 AATCGCCACGACA-T-AGTAGTATTTAGAGTTACT--AGTAAGC-CTG-ATGCCACTACA 64 Target: 8864 CATTTCAGTGAGGCCATTCTC--CA--AAAACTCTCTC---CA-TCTTATTTCTT---G- 8911 ||*||| | | ||**||||| *| |**|*|*|*|| || ||||||*|||| | Query: 65 CAATTC--T-A-GCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 Target: 8912 ------GGGAAAGAGTTCTTCTACT--TACAATATGAT---CAACCTGA--TTAAG---A 8955 *|||||*|*||*|| ||*| ||*|||*|*|| |||**||| *||*| * Query: 121 AAACATAGGAAAAAATTATT-TAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTT 179 Target: 8956 AT-ATATTGGTTT-CTATAACTGTGATGCAGATTATAACTATACAAATGCCAATTACCAG 9013 || |*|*||*||| |||| ||| *|*|||**||**||| | |*|| || |*|* Query: 180 ATAAGAGTGTTTTCCTAT---TGT-TTTCAGTGTAGGACT---C-ACTG----TT-CTAA 226 Target: 9014 A-AGCTAAGCCACCC--TGATTC--CAAAAT---AT--AGTCTCACATTTCATGGTTTCC 9063 | |*||**|*||||| *||||| *||||| || ||| |**||||| || *|||| Query: 227 ATAACTGGGACACCCAAGGATTCTGTAAAATGCCATCCAGT-TATCATTT-AT--ATTCC 282 Target: 9064 TGGTA--TCAGAAATCCCTATGAGCCTG-A--GATTTTTTCCCTTAA-------AGCA-- 9109 *|| ||| ||||*|*| |*| |*|| | *|||||||*| ||| |||| Query: 283 --CTAACTCA-AAATTCAT-TCA-CATGTATTCATTTTTTTC--TAAACAAATTAGCATG 335 Target: 9110 ---AATACTG---AAGAT-----A-AGAA-ACC----AATTAATTTCATTGTTGC----- 9147 |||*||| ||*|| | |||| ||| *||| *||||| |**||| Query: 336 TAGAATTCTGGTTAAAATTTGGCATAGAACACCCGGGTATT-TTTTCA-TAATGCACCCA 393 Target: 9148 -TATCTTGT-AT---CCAATGGCATAA----AATCTATACTAACTTGATTAGAAA-TTCT 9197 ||*| ||| || |*|||*| |*|| *||*|| ||*|| *|||*|*||| ||*| Query: 394 ATAAC-TGTCATTCACTAATTG-AGAATGGTGATTTA-ACAAA--GGATAATAAAGTTAT 448 Target: 9198 G---CCAATG------AACAACT-T---TA--T--TGT-TTTGAGTGATG---------- 9229 | |||||| ||||*|| | || | ||| |*||*||| || Query: 449 GAAACCAATGCCACAAAACATCTGTCTCTAACTGGTGTGTGTGTGTG-TGTGTGTGTGTG 507 Target: 9230 -------AAGCCCCATTTGAGA-ATATAGGCTCAATGGCCTTGC-----TCT-----TA- 9270 |||****| |||| |*|*|***|||*| ||*|*| ||| || Query: 508 TGTGTGTAAGAGGGA---GAGAGAGAAAATTTCACT--CCCTCCATAAATCTCACAGTAT 562 Target: 9271 ACTGTTCTCTATGCAGTCACTTTCTTCTGCACTAAAGTGCCAATACAGATACTG-AATAC 9329 *||*||||*|*|*|**|| |||||*| |||*|| **|**|**|*| ||*|| **|*| Query: 563 TCTTTTCTTTTTCCTTTC-CTTTCCT-TGCTCT--TCTTTCTCTCC---TATTGCTTTCC 615 Target: 9330 ATTGATTTAAAT-ACATAGATATATAAATA--GATAT-TTAAATATGC--AATATATATG 9383 *||*||||***| *|||| |*|*|*||||| *|||| **||||| *| ||||||*||| Query: 616 TTTCATTTCCTTCTCATA-AAAGAAAAATAACAATATAGAAAATA-ACAAAATATAGATG 673 Target: 9384 G--ATAC---TTTATATATT--GATT---TAAA----CATTTTCC--------TCTCATA 9421 | | || |||| ||||| |*|| |||| ||||*||| |||| || Query: 674 GTCA-ACCTTTTTA-ATATTAAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTC-TA 730 Target: 9422 GA-----TGA--AAAATCACTCTAACATGTATTGATGGCTTCACA-AGAAATCATTTACA 9473 || ||| *|*|| ||| | ||| |||| || ||| *|*|*|||**||*| Query: 731 GAGATGCTGATGTATAT-ACT-T-ACA--TATT------TT-ACAGTGTATTCAAATAAA 778 Target: 9474 GAAAATAATTGCATATGATACAGT--GTTTGTGCCAAAATGTATTCATGGCTTTAAAAAC 9531 ||**|| |||*||||*||*|*| | *|||||**|*||*| CPU time: 386.145492 seconds || ||*|*||||*|| Query: 779 GAGTAT-ATTACATAAGACATA-TCCTTTTGTAACCAACT---TT--TGTCATTAACAA- 830 Target: 9532 TTCAGTGGAAATGTCTATTCAGATCCCTAGCCCATTGTTAAATTGGTTTCTGTTTTCTTG 9591 ||*|*||||**||||*| || |*|| |||||**||*|| | ||| Query: 831 TTTACTGGACTTGTCAA--CA-AACC------------TAAATCTGTATC-G---TCT-- 869 Target: 9592 CTAAGTTTGAGCTGC-TTATAGATGATGGATATTGACCCCTTATAGATGTTGGATATTGA 9650 *||| || |||*| || *||**||| || ||| ||*|| | ||| | Query: 870 ATAA---TG-GCTACGTT---CATTTTGG-TA-TGA----------ATCTT--A-ATT-A 906 Target: 9651 CCCC-TTGTGGATGTATGGCCGGTGCTTTTCCCAGTATTTAGGTCATCTCTGCA---CAC 9706 |||| ||*||*|| ||| ****||*|||||*|| ||| |||| ||||**| *|| Query: 907 CCCCTTTCTGCAT-TAT--TTAATGATTTTCTCA-TAT----GTCA-CTCTTAAATGTAC 957 Target: 9707 TGTTGATTGTTTC-CTTT 9723 |**|*||| |||| |||| Query: 958 TTCTAATT-TTTCACTTT 974 make[1]: Leaving directory '/build/reproducible-path/libssw-1.2.5' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/libssw-1.2.5' sed 's/@DEB_HOST_MULTIARCH@/i386-linux-gnu/g' debian/libssw1.install.in > debian/libssw1.install sed 's/@DEB_HOST_MULTIARCH@/i386-linux-gnu/g' debian/libssw-dev.install.in > debian/libssw-dev.install sed -e 's/@DEB_HOST_MULTIARCH@/i386-linux-gnu/g' \ -e 's/@DEB_JAVA_PKG_VERSION@/1.2.5/g' debian/libssw-dev.links.in > debian/libssw-dev.links sed 's/@DEB_HOST_MULTIARCH@/i386-linux-gnu/g' debian/libssw-java.install.in > debian/libssw-java.install sed -e 's/@DEB_HOST_MULTIARCH@/i386-linux-gnu/g' \ -e 's/@DEB_JAVA_PKG_VERSION@/1.2.5/g' debian/libssw-java.links.in > debian/libssw-java.links mv src/ssw.jar src/ssw-1.2.5.jar dh_auto_install make[1]: Leaving directory '/build/reproducible-path/libssw-1.2.5' dh_install jh_installjavadoc dh_installdocs dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/libssw-1.2.5' LD_LIBRARY_PATH=`pwd`/src help2man --version-string=' ' --help-option=' ' \ -I debian/extra-man-info.txt \ -N -n 'fast Smith-Waterman aligner' \ --no-discard-stderr src/ssw-align \ | fgrep -v ERROR > debian/ssw-align.1 dh_installman make[1]: Leaving directory '/build/reproducible-path/libssw-1.2.5' dh_perl dh_link jh_installlibs jh_classpath jh_manifest jh_exec jh_depends mh_installpoms mh_linkjars --skip-clean-poms dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libssw1/DEBIAN/symbols doesn't match completely debian/libssw1.symbols --- debian/libssw1.symbols (libssw1_1.2.5-1_i386) +++ dpkg-gensymbols52PZiW 2024-11-20 14:28:12.170105510 -1200 @@ -21,7 +21,8 @@ _ZNK20StripedSmithWaterman7Aligner13TranslateBaseEPKcRKiPa@Base 1.1 _ZNK20StripedSmithWaterman7Aligner5AlignEPKcRKNS_6FilterEPNS_9AlignmentEi@Base 1.2.4 _ZNK20StripedSmithWaterman7Aligner5AlignEPKcS2_RKiRKNS_6FilterEPNS_9AlignmentEi@Base 1.2.4 - (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 1.1 + _ZNSt6vectorIjSaIjEE17_M_realloc_appendIJRKjEEEvDpOT_@Base 1.2.5-1 +#MISSING: 1.2.5-1# (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 1.1 align_destroy@Base 1.1 encoded_ops@Base 1.2.4 init_destroy@Base 1.1 dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libssw1' in '../libssw1_1.2.5-1_i386.deb'. dpkg-deb: building package 'libssw1-dbgsym' in '../libssw1-dbgsym_1.2.5-1_i386.deb'. dpkg-deb: building package 'libssw-dev' in '../libssw-dev_1.2.5-1_i386.deb'. dpkg-deb: building package 'libssw-java' in '../libssw-java_1.2.5-1_i386.deb'. dpkg-deb: building package 'libssw-java-dbgsym' in '../libssw-java-dbgsym_1.2.5-1_i386.deb'. dpkg-deb: building package 'ssw-align' in '../ssw-align_1.2.5-1_i386.deb'. dpkg-deb: building package 'ssw-align-dbgsym' in '../ssw-align-dbgsym_1.2.5-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../libssw_1.2.5-1_i386.buildinfo dpkg-genchanges --build=binary -O../libssw_1.2.5-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/7621 and its subdirectories I: Current time: Wed Nov 20 14:28:17 -12 2024 I: pbuilder-time-stamp: 1732156097 Thu Nov 21 02:28:17 UTC 2024 I: Signing ./b1/libssw_1.2.5-1_i386.buildinfo as libssw_1.2.5-1_i386.buildinfo.asc Thu Nov 21 02:28:17 UTC 2024 I: Signed ./b1/libssw_1.2.5-1_i386.buildinfo as ./b1/libssw_1.2.5-1_i386.buildinfo.asc Thu Nov 21 02:28:17 UTC 2024 - build #1 for libssw/experimental/i386 on ionos12-i386 done. Starting cleanup. All cleanup done. Thu Nov 21 02:28:17 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-SHloHCmM, removing. /srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 21 02:28 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 21 02:20 b2 -rw-r--r-- 1 jenkins jenkins 2393 Aug 14 2023 libssw_1.2.5-1.dsc -rw------- 1 jenkins jenkins 3506 Nov 21 02:20 rbuildlog.r1llZqR /srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx/b1: total 12568 -rw-r--r-- 1 jenkins jenkins 98760 Nov 21 02:28 build.log -rw-r--r-- 1 jenkins jenkins 26852 Nov 21 02:28 libssw-dev_1.2.5-1_i386.deb -rw-r--r-- 1 jenkins jenkins 38664 Nov 21 02:28 libssw-java-dbgsym_1.2.5-1_i386.deb -rw-r--r-- 1 jenkins jenkins 20448 Nov 21 02:28 libssw-java_1.2.5-1_i386.deb -rw-r--r-- 1 jenkins jenkins 107248 Nov 21 02:28 libssw1-dbgsym_1.2.5-1_i386.deb -rw-r--r-- 1 jenkins jenkins 26148 Nov 21 02:28 libssw1_1.2.5-1_i386.deb -rw-r--r-- 1 jenkins jenkins 15348 Nov 21 02:28 libssw_1.2.5-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2393 Nov 21 02:28 libssw_1.2.5-1.dsc -rw-r--r-- 1 jenkins jenkins 9829 Nov 21 02:28 libssw_1.2.5-1_i386.buildinfo -rw-r--r-- 1 jenkins jenkins 10711 Nov 21 02:28 libssw_1.2.5-1_i386.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 3142 Nov 21 02:28 libssw_1.2.5-1_i386.changes -rw-r--r-- 1 jenkins jenkins 1684 Nov 21 02:28 libssw_1.2.5-1_source.changes -rw-r--r-- 1 jenkins jenkins 12384395 Nov 21 02:28 libssw_1.2.5.orig.tar.gz -rw-r--r-- 1 jenkins jenkins 47044 Nov 21 02:28 ssw-align-dbgsym_1.2.5-1_i386.deb -rw-r--r-- 1 jenkins jenkins 24376 Nov 21 02:28 ssw-align_1.2.5-1_i386.deb /srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx/b2: total 0 Thu Nov 21 02:28:18 UTC 2024 I: Deleting $TMPDIR on ionos12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Nov 20 14:20:28 -12 2024 I: pbuilder-time-stamp: 1732155628 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [libssw_1.2.5-1.dsc] I: copying [./libssw_1.2.5.orig.tar.gz] I: copying [./libssw_1.2.5-1.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Aug 14 14:33:35 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libssw_1.2.5-1.dsc: no acceptable signature found dpkg-source: info: extracting libssw in libssw-1.2.5 dpkg-source: info: unpacking libssw_1.2.5.orig.tar.gz dpkg-source: info: unpacking libssw_1.2.5-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying build_all_libs.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying rename_tool.patch dpkg-source: info: applying simde.patch dpkg-source: info: applying malloc I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/7621/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='experimental' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='649df34c73d24f31800ca0b6492b0a38' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='7621' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx/pbuilderrc_KZBg --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx/b1 --logfile b1/build.log libssw_1.2.5-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos12-i386 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/7621/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), default-jdk-headless, javahelper, help2man, zlib1g-dev, libsimde-dev, maven-repo-helper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19952 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on default-jdk-headless; however: Package default-jdk-headless is not installed. pbuilder-satisfydepends-dummy depends on javahelper; however: Package javahelper is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on maven-repo-helper; however: Package maven-repo-helper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} binfmt-support{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} dctrl-tools{a} debhelper{a} default-jdk-headless{a} default-jre-headless{a} devscripts{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dirmngr{a} dwz{a} fastjar{a} file{a} gettext{a} gettext-base{a} gnupg{a} gnupg-l10n{a} gpg{a} gpg-agent{a} gpgconf{a} gpgsm{a} groff-base{a} help2man{a} intltool-debian{a} jarwrapper{a} java-common{a} javahelper{a} libarchive-zip-perl{a} libassuan9{a} libb-hooks-op-check-perl{a} libclass-method-modifiers-perl{a} libclass-xsaccessor-perl{a} libclone-perl{a} libcom-err2{a} libdebhelper-perl{a} libdevel-callchecker-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libexpat1{a} libfile-dirlist-perl{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-touch-perl{a} libfile-which-perl{a} libgssapi-krb5-2{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libimport-into-perl{a} libio-html-perl{a} libio-pty-perl{a} libio-socket-ssl-perl{a} libipc-run-perl{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libksba8{a} liblcms2-2{a} libldap-2.5-0{a} liblocale-gettext-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libmodule-runtime-perl{a} libmoo-perl{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnpth0t64{a} libnsl2{a} libnspr4{a} libnss3{a} libparams-classify-perl{a} libpcsclite1{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librole-tiny-perl{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libsub-quote-perl{a} libtimedate-perl{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml2{a} m4{a} man-db{a} maven-repo-helper{a} media-types{a} netbase{a} openjdk-21-jdk-headless{a} openjdk-21-jre-headless{a} openssl{a} patchutils{a} perl-openssl-defaults{a} pinentry-curses{a} po-debconf{a} python3{a} python3-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} wdiff{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl debian-keyring dput dput-ng dupload equivs gnupg-utils gpg-wks-client krb5-locales libarchive-cpio-perl libasound2t64 libcups2t64 libdata-dump-perl libdistro-info-perl libfontconfig1 libfreetype6 libgit-wrapper-perl libgitlab-api-v4-perl libharfbuzz0b libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libio-compress-brotli-perl libjson-perl libldap-common liblist-compare-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libnamespace-clean-perl liboss4-salsa-asound2 libsasl2-modules libsoap-lite-perl libstring-shellquote-perl libxstring-perl licensecheck lintian lynx pristine-tar python3-apt python3-debian python3-magic python3-requests python3-unidiff python3-xdg strace unzip wget 0 packages upgraded, 130 newly installed, 0 to remove and 0 not upgraded. Need to get 168 MB of archives. After unpacking 443 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 binfmt-support i386 2.2.2-7 [65.8 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 liblocale-gettext-perl i386 1.07-7+b1 [15.4 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 libpython3.12-minimal i386 3.12.7-3 [814 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.6.4-1 [107 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 python3.12-minimal i386 3.12.7-3 [2236 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 python3-minimal i386 3.12.7-1 [26.8 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 media-types all 10.1.0 [26.9 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 netbase all 6.4 [12.8 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 tzdata all 2024b-3 [255 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 libcom-err2 i386 1.47.1-1+b1 [23.4 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Get: 15 http://deb.debian.org/debian unstable/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 libtirpc3t64 i386 1.3.4+ds-1.3+b1 [90.5 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 libnsl2 i386 1.3.0-3+b3 [42.7 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 readline-common all 8.2-5 [69.3 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 libreadline8t64 i386 8.2-5 [173 kB] Get: 22 http://deb.debian.org/debian unstable/main i386 libpython3.12-stdlib i386 3.12.7-3 [1964 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 python3.12 i386 3.12.7-3 [671 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 libpython3-stdlib i386 3.12.7-1 [9712 B] Get: 25 http://deb.debian.org/debian unstable/main i386 python3 i386 3.12.7-1 [27.8 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 openssl i386 3.3.2-2 [1387 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 ca-certificates all 20240203 [158 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 35 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.2-11 [95.6 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-4 [293 kB] Get: 38 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 39 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 40 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 41 http://deb.debian.org/debian unstable/main i386 autopoint all 0.22.5-2 [723 kB] Get: 42 http://deb.debian.org/debian unstable/main i386 ca-certificates-java all 20240118 [11.6 kB] Get: 43 http://deb.debian.org/debian unstable/main i386 dctrl-tools i386 2.24-3 [105 kB] Get: 44 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 45 http://deb.debian.org/debian unstable/main i386 libtool all 2.4.7-8 [517 kB] Get: 46 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 47 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 48 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 49 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 50 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 51 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 52 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-5+b1 [9583 kB] Get: 53 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 54 http://deb.debian.org/debian unstable/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 55 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 56 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 57 http://deb.debian.org/debian unstable/main i386 debhelper all 13.20 [915 kB] Get: 58 http://deb.debian.org/debian unstable/main i386 java-common all 0.76 [6776 B] Get: 59 http://deb.debian.org/debian unstable/main i386 liblcms2-2 i386 2.16-2 [171 kB] Get: 60 http://deb.debian.org/debian unstable/main i386 libjpeg62-turbo i386 1:2.1.5-3+b1 [171 kB] Get: 61 http://deb.debian.org/debian unstable/main i386 libnspr4 i386 2:4.36-1 [119 kB] Get: 62 http://deb.debian.org/debian unstable/main i386 libnss3 i386 2:3.106-1 [1504 kB] Get: 63 http://deb.debian.org/debian unstable/main i386 libpcsclite1 i386 2.3.0-3 [57.1 kB] Get: 64 http://deb.debian.org/debian unstable/main i386 openjdk-21-jre-headless i386 21.0.5+11-1 [43.2 MB] Get: 65 http://deb.debian.org/debian unstable/main i386 default-jre-headless i386 2:1.21-76 [3192 B] Get: 66 http://deb.debian.org/debian unstable/main i386 openjdk-21-jdk-headless i386 21.0.5+11-1 [85.4 MB] Get: 67 http://deb.debian.org/debian unstable/main i386 default-jdk-headless i386 2:1.21-76 [1124 B] Get: 68 http://deb.debian.org/debian unstable/main i386 libassuan9 i386 3.0.1-2 [62.4 kB] Get: 69 http://deb.debian.org/debian unstable/main i386 gpgconf i386 2.2.45-2 [127 kB] Get: 70 http://deb.debian.org/debian unstable/main i386 libksba8 i386 1.6.7-2+b1 [142 kB] Get: 71 http://deb.debian.org/debian unstable/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8 [20.6 kB] Get: 72 http://deb.debian.org/debian unstable/main i386 libsasl2-2 i386 2.1.28+dfsg1-8 [61.0 kB] Get: 73 http://deb.debian.org/debian unstable/main i386 libldap-2.5-0 i386 2.5.18+dfsg-3+b1 [200 kB] Get: 74 http://deb.debian.org/debian unstable/main i386 libnpth0t64 i386 1.6-3.1+b1 [18.3 kB] Get: 75 http://deb.debian.org/debian unstable/main i386 dirmngr i386 2.2.45-2 [396 kB] Get: 76 http://deb.debian.org/debian unstable/main i386 gnupg-l10n all 2.2.45-2 [705 kB] Get: 77 http://deb.debian.org/debian unstable/main i386 gpg i386 2.2.45-2 [573 kB] Get: 78 http://deb.debian.org/debian unstable/main i386 pinentry-curses i386 1.2.1-4+b1 [80.4 kB] Get: 79 http://deb.debian.org/debian unstable/main i386 gpg-agent i386 2.2.45-2 [269 kB] Get: 80 http://deb.debian.org/debian unstable/main i386 gpgsm i386 2.2.45-2 [275 kB] Get: 81 http://deb.debian.org/debian unstable/main i386 gnupg all 2.2.45-2 [376 kB] Get: 82 http://deb.debian.org/debian unstable/main i386 libfile-dirlist-perl all 0.05-3 [7600 B] Get: 83 http://deb.debian.org/debian unstable/main i386 libfile-which-perl all 1.27-2 [15.1 kB] Get: 84 http://deb.debian.org/debian unstable/main i386 libfile-homedir-perl all 1.006-2 [42.4 kB] Get: 85 http://deb.debian.org/debian unstable/main i386 libfile-touch-perl all 0.12-2 [8816 B] Get: 86 http://deb.debian.org/debian unstable/main i386 libio-pty-perl i386 1:1.20-1+b2 [35.8 kB] Get: 87 http://deb.debian.org/debian unstable/main i386 libipc-run-perl all 20231003.0-2 [101 kB] Get: 88 http://deb.debian.org/debian unstable/main i386 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get: 89 http://deb.debian.org/debian unstable/main i386 libclass-xsaccessor-perl i386 1.19-4+b4 [37.5 kB] Get: 90 http://deb.debian.org/debian unstable/main i386 libb-hooks-op-check-perl i386 0.22-3+b2 [10.7 kB] Get: 91 http://deb.debian.org/debian unstable/main i386 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get: 92 http://deb.debian.org/debian unstable/main i386 libdevel-callchecker-perl i386 0.009-1+b1 [16.2 kB] Get: 93 http://deb.debian.org/debian unstable/main i386 libparams-classify-perl i386 0.015-2+b4 [23.1 kB] Get: 94 http://deb.debian.org/debian unstable/main i386 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 95 http://deb.debian.org/debian unstable/main i386 libimport-into-perl all 1.002005-2 [11.3 kB] Get: 96 http://deb.debian.org/debian unstable/main i386 librole-tiny-perl all 2.002004-1 [21.4 kB] Get: 97 http://deb.debian.org/debian unstable/main i386 libsub-quote-perl all 2.006008-1 [21.8 kB] Get: 98 http://deb.debian.org/debian unstable/main i386 libmoo-perl all 2.005005-1 [58.0 kB] Get: 99 http://deb.debian.org/debian unstable/main i386 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 100 http://deb.debian.org/debian unstable/main i386 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 101 http://deb.debian.org/debian unstable/main i386 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 102 http://deb.debian.org/debian unstable/main i386 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 103 http://deb.debian.org/debian unstable/main i386 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 104 http://deb.debian.org/debian unstable/main i386 liburi-perl all 5.30-1 [105 kB] Get: 105 http://deb.debian.org/debian unstable/main i386 libhtml-parser-perl i386 3.83-1+b1 [101 kB] Get: 106 http://deb.debian.org/debian unstable/main i386 libhtml-tree-perl all 5.07-3 [211 kB] Get: 107 http://deb.debian.org/debian unstable/main i386 libclone-perl i386 0.47-1+b1 [14.0 kB] Get: 108 http://deb.debian.org/debian unstable/main i386 libio-html-perl all 1.004-3 [16.2 kB] Get: 109 http://deb.debian.org/debian unstable/main i386 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 110 http://deb.debian.org/debian unstable/main i386 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 111 http://deb.debian.org/debian unstable/main i386 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 112 http://deb.debian.org/debian unstable/main i386 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 113 http://deb.debian.org/debian unstable/main i386 perl-openssl-defaults i386 7+b2 [6720 B] Get: 114 http://deb.debian.org/debian unstable/main i386 libnet-ssleay-perl i386 1.94-2 [340 kB] Get: 115 http://deb.debian.org/debian unstable/main i386 libio-socket-ssl-perl all 2.089-1 [223 kB] Get: 116 http://deb.debian.org/debian unstable/main i386 libnet-http-perl all 6.23-1 [23.9 kB] Get: 117 http://deb.debian.org/debian unstable/main i386 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 118 http://deb.debian.org/debian unstable/main i386 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 119 http://deb.debian.org/debian unstable/main i386 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 120 http://deb.debian.org/debian unstable/main i386 libwww-perl all 6.77-1 [183 kB] Get: 121 http://deb.debian.org/debian unstable/main i386 patchutils i386 0.4.2-1 [79.6 kB] Get: 122 http://deb.debian.org/debian unstable/main i386 wdiff i386 1.2.2-6 [120 kB] Get: 123 http://deb.debian.org/debian unstable/main i386 devscripts all 2.24.3 [1079 kB] Get: 124 http://deb.debian.org/debian unstable/main i386 fastjar i386 2:0.98-7 [47.3 kB] Get: 125 http://deb.debian.org/debian unstable/main i386 help2man i386 1.49.3 [198 kB] Get: 126 http://deb.debian.org/debian unstable/main i386 jarwrapper all 0.80 [9692 B] Get: 127 http://deb.debian.org/debian unstable/main i386 javahelper all 0.80 [80.4 kB] Get: 128 http://deb.debian.org/debian unstable/main i386 libsimde-dev all 0.8.2-1 [465 kB] Get: 129 http://deb.debian.org/debian unstable/main i386 maven-repo-helper all 1.11 [142 kB] Get: 130 http://deb.debian.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Fetched 168 MB in 3s (49.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpipeline1:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19952 files and directories currently installed.) Preparing to unpack .../0-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package binfmt-support. Preparing to unpack .../1-binfmt-support_2.2.2-7_i386.deb ... Unpacking binfmt-support (2.2.2-7) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../2-liblocale-gettext-perl_1.07-7+b1_i386.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libpython3.12-minimal:i386. Preparing to unpack .../3-libpython3.12-minimal_3.12.7-3_i386.deb ... Unpacking libpython3.12-minimal:i386 (3.12.7-3) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../4-libexpat1_2.6.4-1_i386.deb ... Unpacking libexpat1:i386 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../5-python3.12-minimal_3.12.7-3_i386.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:i386 (3.12.7-3) ... Setting up libexpat1:i386 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20310 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_i386.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../04-libkrb5support0_1.21.3-3_i386.deb ... Unpacking libkrb5support0:i386 (1.21.3-3) ... Selecting previously unselected package libcom-err2:i386. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_i386.deb ... Unpacking libcom-err2:i386 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../06-libk5crypto3_1.21.3-3_i386.deb ... Unpacking libk5crypto3:i386 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../07-libkeyutils1_1.6.3-4_i386.deb ... Unpacking libkeyutils1:i386 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../08-libkrb5-3_1.21.3-3_i386.deb ... Unpacking libkrb5-3:i386 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:i386. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3 to /lib/i386-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3.0.0 to /lib/i386-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:i386 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:i386. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_i386.deb ... Unpacking libnsl2:i386 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:i386. Preparing to unpack .../14-libreadline8t64_8.2-5_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:i386. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_i386.deb ... Unpacking libpython3.12-stdlib:i386 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_i386.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../17-libpython3-stdlib_3.12.7-1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.12.7-1) ... Setting up python3-minimal (3.12.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21372 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.7-1_i386.deb ... Unpacking python3 (3.12.7-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.3.2-2_i386.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3+b1_i386.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.22.5-2_i386.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../008-libuchardet0_0.0.8-1+b2_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-5_i386.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40.2-11_i386.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package man-db. Preparing to unpack .../011-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../012-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../013-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../014-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../015-automake_1%3a1.16.5-1.3_all.deb ... 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Setting up java-common (0.76) ... Setting up libdynaloader-functions-perl (0.004-1) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up libio-pty-perl (1:1.20-1+b2) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libclone-perl:i386 (0.47-1+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.20) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:i386 (1:5.45-3+b1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up perl-openssl-defaults:i386 (7+b2) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libcom-err2:i386 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:i386 (0.192-4) ... Setting up libkrb5support0:i386 (1.21.3-3) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Nov 21 02:21:06 UTC 2024. Universal Time is now: Thu Nov 21 02:21:06 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libjpeg62-turbo:i386 (1:2.1.5-3+b1) ... Setting up libnspr4:i386 (2:4.36-1) ... Setting up gnupg-l10n (2.2.45-2) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.22.5-2) ... Setting up binfmt-support (2.2.2-7) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libb-hooks-op-check-perl:i386 (0.22-3+b2) ... Setting up libipc-run-perl (20231003.0-2) ... Setting up libpcsclite1:i386 (2.3.0-3) ... Setting up libk5crypto3:i386 (1.21.3-3) ... Setting up libsasl2-2:i386 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up libtimedate-perl (2.3300-2) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b2) ... Setting up libassuan9:i386 (3.0.1-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up netbase (6.4) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b4) ... Setting up libkrb5-3:i386 (1.21.3-3) ... Setting up libfile-dirlist-perl (0.05-3) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up openssl (3.3.2-2) ... Setting up readline-common (8.2-5) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liburi-perl (5.30-1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up libfile-touch-perl (0.12-2) ... Setting up dctrl-tools (2.24-3) ... Setting up libnet-ssleay-perl:i386 (1.94-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up pinentry-curses (1.2.1-4+b1) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.22.5-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up jarwrapper (0.80) ... Setting up libtool (2.4.7-8) ... Setting up libnet-http-perl (6.23-1) ... Setting up libnss3:i386 (2:3.106-1) ... Setting up libdevel-callchecker-perl:i386 (0.009-1+b1) ... Setting up libldap-2.5-0:i386 (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up patchutils (0.4.2-1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libgssapi-krb5-2:i386 (1.21.3-3) ... Setting up libreadline8t64:i386 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-5) ... Setting up libhtml-parser-perl:i386 (3.83-1+b1) ... Setting up gpgconf (2.2.45-2) ... Setting up ca-certificates-java (20240118) ... No JRE found. Skipping Java certificates setup. Setting up libio-socket-ssl-perl (2.089-1) ... Setting up gpg (2.2.45-2) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up gpg-agent (2.2.45-2) ... Setting up openjdk-21-jre-headless:i386 (21.0.5+11-1) ... update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libtirpc3t64:i386 (1.3.4+ds-1.3+b1) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:i386 (0.015-2+b4) ... Setting up gpgsm (2.2.45-2) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up dirmngr (2.2.45-2) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libnsl2:i386 (1.3.0-3+b3) ... Setting up gnupg (2.2.45-2) ... Setting up libpython3.12-stdlib:i386 (3.12.7-3) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:i386 (3.12.7-1) ... Setting up python3 (3.12.7-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.77-1) ... Setting up devscripts (2.24.3) ... Setting up javahelper (0.80) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates-java (20240118) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:BJCA_Global_Root_CA1.pem Adding debian:BJCA_Global_Root_CA2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:CommScope_Public_Trust_ECC_Root-01.pem Adding debian:CommScope_Public_Trust_ECC_Root-02.pem Adding debian:CommScope_Public_Trust_RSA_Root-01.pem Adding debian:CommScope_Public_Trust_RSA_Root-02.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustAsia_Global_Root_CA_G3.pem Adding debian:TrustAsia_Global_Root_CA_G4.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up openjdk-21-jdk-headless:i386 (21.0.5+11-1) ... update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jwebserver to provide /usr/bin/jwebserver (jwebserver) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up default-jre-headless (2:1.21-76) ... Setting up maven-repo-helper (1.11) ... Setting up default-jdk-headless (2:1.21-76) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20240118) ... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libssw-1.2.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libssw_1.2.5-1_source.changes dpkg-buildpackage: info: source package libssw dpkg-buildpackage: info: source version 1.2.5-1 dpkg-buildpackage: info: source distribution experimental dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --with javahelper --with jh_maven_repo_helper debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/libssw-1.2.5' rm -f debian/libssw*install debian/libssw*links debian/ssw-align.1 dh_auto_clean --sourcedirectory src cd src && make -j11 clean make[2]: Entering directory '/build/reproducible-path/libssw-1.2.5/src' rm -f ssw.o ssw_cpp.o ssw-align libssw.so.1 example_c example_cpp libsswjni.so *.jar ssw/Aligner.class ssw/Alignment.class *~ libssw.a make[2]: Leaving directory '/build/reproducible-path/libssw-1.2.5/src' make[1]: Leaving directory '/build/reproducible-path/libssw-1.2.5' jh_clean Duplicate specification "u=s" for option "u" dh_clean debian/rules binary dh binary --with javahelper --with jh_maven_repo_helper dh_update_autotools_config dh_autoreconf jh_linkjars debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/libssw-1.2.5' dh_auto_build --sourcedirectory src -- default java cd src && make -j11 "INSTALL=install --strip-program=true" default java make[2]: Entering directory '/build/reproducible-path/libssw-1.2.5/src' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libssw-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -shared -rdynamic -Wl,-soname,libssw.so.1 -o libssw.so.1 ssw.c ssw.h ssw_cpp.h ssw_cpp.cpp -Wl,-z,relro -Wl,-z,now cc -c -o ssw.o ssw.c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libssw-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -pipe -O2 g++ -c -o ssw_cpp.o ssw_cpp.cpp -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libssw-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 javac ssw/Aligner.java javac ssw/Alignment.java cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libssw-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -pipe -O2 -I"/usr/lib/jvm/default-java/include" -I"/usr/lib/jvm/default-java/include/linux" -I/usr/lib/jvm/default-java/include/ -I/usr/lib/jvm/default-java/include/linux -fPIC -shared -rdynamic -o libsswjni.so sswjni.c ssw.c -Wl,-z,relro -Wl,-z,now ssw.c: In function 'sw_sse2_byte': ssw.c:231:17: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 231 | __m128i vZero = _mm_set1_epi32(0); | ^~~~~ ssw.c: In function 'sw_sse2_byte': ssw.c:231:17: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 231 | __m128i vZero = _mm_set1_epi32(0); | ^~~~~ ssw.c: In function 'alignment_end* sw_sse2_byte(const int8_t*, int8_t, int32_t, int32_t, uint8_t, uint8_t, const __m128i*, uint8_t, uint8_t, int32_t)': ssw.c:266:20: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 266 | vH = _mm_slli_si128 (vH, 1); /* Shift the 128-bit value in vH left by 1 byte. */ | ^ jar cvf ssw.jar ssw/Aligner.class ssw/Alignment.class added manifest adding: ssw/Aligner.class(in = 2486) (out= 1527)(deflated 38%) adding: ssw/Alignment.class(in = 1029) (out= 602)(deflated 41%) ar rcs libssw.a ssw.o ssw_cpp.o cc -o example_c ssw.o example.c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libssw-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -pipe -O2 -Wl,-z,relro -Wl,-z,now -lm -lz g++ -o example_cpp example.cpp ssw.o ssw_cpp.o -g -O2 -ffile-prefix-map=/build/reproducible-path/libssw-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lz cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libssw-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -pipe -O2 -o ssw-align main.c kseq.h -L. -lssw -lm -lz -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/libssw-1.2.5/src' make[1]: Leaving directory '/build/reproducible-path/libssw-1.2.5' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libssw-1.2.5' LD_PRELOAD="$LD_PRELOAD /build/reproducible-path/libssw-1.2.5/src/libssw.so" src/ssw-align -c demo/ref.fa demo/1k.fa ERROR: ld.so: object '/build/reproducible-path/libssw-1.2.5/src/libssw.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. target_name: chr1 query_name: chr1 optimal_alignment_score: 2002 suboptimal_alignment_score: 1000 strand: + target_begin: 1 target_end: 1001 query_begin: 1 query_end: 1001 Target: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 Target: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 Target: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 Target: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 Target: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 Target: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 Target: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 Target: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 Target: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 Target: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 Target: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 Target: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 Target: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 Target: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 Target: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 Target: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 Target: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 ||||||||||||||||||||||||||||||||||||||||| Query: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 target_name: chr2 query_name: chr1 optimal_alignment_score: 312 suboptimal_alignment_score: 311 strand: + target_begin: 4437430 target_end: 4438470 query_begin: 9 query_end: 971 Target: 4437430 TTGAT-TCCACAGATTCCAATAGAATAGTTTGAAGATGGAACAATTGAGAATTCTGAATG 4437488 ||*|| *|||| || | |||| ||||*|**||| |**||*|*| ||**||| ||| Query: 9 TTAATCGCCAC-GA--C--ATAG--TAGTATTTAGA-GTTACTAGT---AAGCCTG-ATG 56 Target: 4437489 ---CTAAGCTAAT--TAGATATGTTTTCTTTGAAGGAAAACTACATTGTATTATTTTGCC 4437543 |||**| ||| |||*| | ||*||||| |||| | *|||||*|*|||**| Query: 57 CCACTACAC-AATTCTAGCT-T-TTCTCTTT--AGGA----T-GATTGTTTCATTCAG-- 104 Target: 4437544 TCCTCCCTCCTCCTAGAAGCCTT----TAAAATTCATGCATCATTTTAAAAGTTTTGAAA 4437599 ||*|**|| ||**|||||**|*| *|||||| || *|*||**||||| ||| || Query: 105 TCTTATCT-CTTTTAGAAAACATAGGAAAAAATT-AT--TTAATAATAAAA-TTT--AA- 156 Target: 4437600 TTTTTCAAGATTATGTTTAA-GTAT--ATTA-AATATTTTGTTCAGTCATCCCAATTAGT 4437655 ||**||| | ||| || |||| *||| ||*| *|||| |*||*||| || Query: 157 -TTGGCAA-A--ATG---AAGGTATGGCTTATAAGA--GTGTT------TTCCTATT-GT 200 Target: 4437656 TTTCAATG--G----CCCT-TTCCATTTAAAGAGTTTGGACATTCCATATAAAAAAG-AC 4437707 |||||*|| | |*|| ||| ||||*|**|*||||| *||| |**|****| |* Query: 201 TTTCAGTGTAGGACTCACTGTTC----TAAATAACTGGGACA-CCCA-AGGATTCTGTAA 254 Target: 4437708 AATGTCATCTACA-TTTTC-TTTGTTTT--CT---T---AATT-AT----ATCTTTTCCT 4437752 ||||*|||| || ||*|| |||*|*|| || | |||| || ||*|*|||*| Query: 255 AATGCCATC--CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCACATGTATTCAT 312 Target: 4437753 TTTTACAAATTTCTTAA-AAA-TAG-GTGTAAGATCTCTGATTTAACCTATGTGCGT--- 4437806 ||| |||||*|| ||| ||| *||| |||**|||| *||||**|*|| ||*| Query: 313 TTT------TTTCTAAACAAATTAGCATGT-AGAATTCTG-GTTAAAATTTG-GCATAGA 363 Target: 4437807 -C------TTAATTTTTCA----GCTTC---T--CTGTCATT---TTATT-AGATGTTTT 4437846 | *||*||||||| ||**| | |||||||| |*||| ||| Query: 364 ACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGA------ 417 Target: 4437847 TATTGT-TTTTAA------TTACTAAATTAATCTTAATCTATG-CTTATTATATCATTCT 4437898 ||*|| *||||| *||*||||*|*|| **||*|*||| |**|**|*|||**||| Query: 418 -ATGGTGATTTAACAAAGGATAATAAAGTTAT-GAAACCAATGCCACAAAACATCTGTCT 475 Target: 4437899 CCATTAC--GT-TATGGATACAACAACT-TG-GTGAATGTTTCTG----AGATTAACACT 4437949 | |*|| || |*||**| *| || |||**|||*|*|| |||***|*|** Query: 476 C--TAACTGGTGTGTGTGT-------GTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGA 526 Target: 4437950 AAAAATATTTAACAATCTCTCTCATTTTTATC----TTTTC-TTTCTTTTTCTCTTTGTC 4438004 *|*||*|||| ||*||*||| |||***|*|| |*||| |||||||||| |||| *| Query: 527 GAGAAAATTT--CACTCCCTC-CATAAATCTCACAGTATTCTTTTCTTTTTC-CTTT-CC 581 Target: 4438005 TTT-CTCACTCTCTATTTATCCTGTTACATCTTTGCTTCTATCTCTTTCTCTGTTTTTTT 4438063 ||| ||**|||| |*|||*| ||**|| |||||| || ||||| *|||**|| Query: 582 TTTCCTTGCTCT-TCTTTCT-CTCCTA-----TTGCTT---TC-CTTTC---ATTTCCTT 627 Target: 4438064 TTTTTAATATTTAAATAATGCTTCTGTCTGAGGAGGTTAAGAAGTGAAAGAAGACATTGT 4438123 *|**|||*|***|||||| |**|*| || || || | ||*||*|*|| Query: 628 CTCATAAAAGAAAAATAA-----CAATAT-AG------AA-AA-T--AACAAAATAT--- 668 Target: 4438124 GAGATGGAGAATCTTTATTAAGATAGAAG---AC--AAAGAGGGGATGAT-----GTGGA 4438173 ||||||**||*|||| ||||*|| *||| || ||| |*|**||*|| |||| Query: 669 -AGATGGTCAACCTTT-TTAATAT-TAAGGTTACCTAAA-ATGCCATTATCCAAAGTGG- 723 Target: 4438174 CACTT-TC-AG-GATG-TGGAATGGT---TACATACATTATT---CTGT-TA-TCACAAG 4438221 || || || |||| || || || |||*|||| |||| |*|| || ||| || Query: 724 ---TTCTCTAGAGATGCTG--AT-GTATATACTTACA-TATTTTACAGTGTATTCA-AA- 774 Target: 4438222 GTTAGCTAA-ACTCTCTTTCATAA-A-ATCTCTCTTGTTTCTTACTCCCTAAATCTCAAA 4438278 || || |*|*|*||*||||| | ||*|| || |||*|*|| | || || Query: 775 --TA---AAGAGTATATTACATAAGACATATC-CT--TTTGTAAC-C---AA--CT---- 816 Target: 4438279 TAAGTGACTAAAAAATGCCTGGA--TGACCCCAAACAGTAAGAATAGCTTGTA-GGTCTC 4438335 |**||*|*|||*||*|**||||| ||*|**||||| *|| ||| | |||| *||||* Query: 817 TTTGTCATTAACAATTTACTGGACTTGTCAACAAAC-CTA--AAT--C-TGTATCGTCTA 870 Target: 4438336 TGAAG---ATGTTATCTTTTGCCCTGGGAAGGTGGATTCCTATACTAACACCTGCACTTG 4438392 |*|*| |*|| ||*||| |||*| ||*|| || ||*|*||*||| || Query: 871 TAATGGCTACGT--TCATTT----TGGTA---TGAAT--CT-TAATTACCCCT----TT- 913 Target: 4438393 AAAAGGTGAACAAGATAATTTTGTATTTATTTTCTCACTA--CCACTGCAGGTAGCATGG 4438450 *|| | ||*||| ||*|*||||||||| || *|||| | *|| *||| Query: 914 -----CTG--C---ATTATT---TAATGATTTTCTCA-TATGTCACT-C--TTA-AATG- 954 Target: 4438451 GACACTTCTTTATTATTCAC 4438470 *||||| |*|||*||||| Query: 955 --TACTTC-TAATTTTTCAC 971 target_name: chr3 query_name: chr1 optimal_alignment_score: 291 suboptimal_alignment_score: 289 strand: + target_begin: 680970 target_end: 682002 query_begin: 9 query_end: 998 Target: 680970 TTAAATTGTCA--ACATGGTA-TATATGAAATGAATTGGGTTTATAATAGTAAACCAATC 681026 || |||*|*|| ||||*||| ||| |*| || || ||*||||||*|| |* Query: 9 TT-AATCGCCACGACATAGTAGTAT-TTA---GA-----GT---TACTAGTAAGCC--TG 53 Target: 681027 TTG-CATTCCTAAAA---TA--AATCCTATTTAG--TTATCGT--------GTGTTATTT 681070 *|| ||*|*| |*|| || **|*||*||||| |*||*|| ||*||| |* Query: 54 ATGCCACTAC-ACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTA-TC 111 Target: 681071 TCTT----AATACAGTGTTGGATTAAGTTTGCTATTTTTTATTTTAAAATTTTACATTAT 681126 |||| ||*||| |*|||**||*| || |||*||**||||| |||| || Query: 112 TCTTTTAGAAAACA---TAGGAAAAAAT----TA--TTTAATAATAAAA-TTTA----AT 157 Target: 681127 TTTCTTCAGTGA---TATTGACCTGT---AGTTTTCTTTCATTATACTGTTTTATCAGAT 681180 |**| **|*||| || ||*|*|*| |||*| |||| *||| ||||| |||| | Query: 158 TGGC-AAAATGAAGGTA-TGGCTTATAAGAGTGT--TTTC-CTAT--TGTTT--TCAG-T 207 Target: 681181 TTAGGTATCAGTGTTAT-AGTTTCT---TCATGAAAGGAAT---TAAGATGTTTTCCTTC 681233 *||||**|||*||||*| |*|**|| *||***|||||*| |||*||| ||*|| Query: 208 GTAGGACTCACTGTTCTAAATAACTGGGACACCCAAGGATTCTGTAAAATG----CCATC 263 Target: 681234 C-CTT-TCA---ATGTT------CTGAATAATCATACAGCAT-TA-TGACTATCTGCCAT 681280 | *|| ||| ||*|| ||*||*|*||||*|| ||| || |*|*|*|*| | Query: 264 CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCA-CATGTATTCATTTTTT----T 318 Target: 681281 TTAAATC--TTTAGAAT----AATTACCTTGTGAAACTATGTGGGCTTGGTGCTATTTTG 681334 *|||| | *||||*|| |||| ||*||*||| || |*|||*|*|**| | ***| Query: 319 CTAAA-CAAATTAGCATGTAGAATT--CTGGTTAAA--AT-TTGGCATAGAAC-A-CCCG 370 Target: 681335 TGTAGTATTTATC-TAATTGTTTCCTATA--TTTC-TT--CTA--TGAAATTGGTTGATT 681386 *||| | |||*|| ||| ||***||*||| |*|| || ||| |||*|*||| ||||| Query: 371 GGTA-T-TTTTTCATAA-TGCACCCAATAACTGTCATTCACTAATTGAGAATGG-TGATT 426 Target: 681387 TAATCTTTCTAACACTAATAAGATTAATTTGAGTAAACTTCATTTCTCTAGAAAATAATT 681446 ||| |*||***||||||**||| || |||| ||*|*| | |*||||*| | Query: 427 TAA-----CAAAGGATAATAAAGTTA---TG---AAAC--CAATGC-C-ACAAAACA--T 469 Target: 681447 AATTCATCAAATTAAATCAAATTTGAAATTTGATTTCAAATTTATTTGTGTCAAAGTAA- 681505 ***|| || |||*|****|*|| |*|| |*| *|*|*|*|||||****|||| Query: 470 CTGTC-TC----TAACTGGTGTGTG---TGTG-TGT---GTGTGTGTGTGTGTGTGTAAG 517 Target: 681506 A-GGAG-G--------TTTC-CT--GT-CATTTTAAAATTCTC----TGTTGTTTTAATA 681547 | |||| | |||| || *| || |||| |||| |*||*|||| *|* Query: 518 AGGGAGAGAGAGAAAATTTCACTCCCTCCA---TAAA--TCTCACAGTATTCTTTT-CTT 571 Target: 681548 GTAACTT--GTTT-CTTATTATTTATAACTTTAT---ATATT--TGTACTT---TTTCCT 681596 *|**||| *||| |||**|*|| ||||*| *|||| |*|*||| ||||| Query: 572 TTTCCTTTCCTTTCCTTGCTCTT-----CTTTCTCTCCTATTGCTTTCCTTTCATTTCC- 625 Target: 681597 TTTTTATCAAATG--AACT--GAGTTT------TAAC-----ATCGCAT--TTAA---TT 681636 ||*|*|| |||*| ||*| *|*|*| |||| ||*| || |*|| || Query: 626 TTCTCAT-AAAAGAAAAATAACAATATAGAAAATAACAAAATATAG-ATGGTCAACCTTT 683 Target: 681637 TTAATTATCTAATCTAAATCTAAAAGCTGATATTTGATTCAA-----TTGTC-AGAAATC 681690 |||| ||| |||**| *|*|||||| ||**||| ||*||| ||*|| |||*|| Query: 684 TTAA-TAT-TAAGGT-TACCTAAAA--TGCCATT--ATCCAAAGTGGTTCTCTAGAGAT- 735 Target: 681691 TCTTAAGTATATTGGGATCAACTTGGAAAAGTAAATTGACTTTAAACAGTACACTT--TA 681748 *||*|*|||||| |||| |*| | ||| || |||||**| || *| Query: 736 GCTGATGTATAT--------ACTT--ACA--T--ATT---TT---ACAGTGTA-TTCAAA 774 Target: 681749 TGAACTTTAAATTACAGATCAGATAT--TTTTAGTAA--AA-TTTTATCCAAACTAAGAT 681803 |*||***||*||||||*|**|*|||| |||| |||| || ||||*|| |*||| Query: 775 TAAAGAGTATATTACATAAGACATATCCTTTT-GTAACCAACTTTTGTC---ATTAA--- 827 Target: 681804 GCAATATGAGTATAATCACTGATTCAA-AAAGCTTCCTTTAGTGAGCATGAAATATC-TC 681861 |||| |*|*|**|*| || |||| ||| || || *|*| || |||| | Query: 828 -CAAT-TTACTGGACT---TG--TCAACAAA----CC--TA--AATC-TG---TATCGT- 867 Target: 681862 ACTATTTTAAT---T---TTAATATTGATTGTGTGTTAAAATAATAATAATTGCATTAT- 681914 ||| |||| | ||*||*||| ||*|| |||**||||*|***|*||*| Query: 868 -CTA---TAATGGCTACGTTCATTTTG---GTATG----AATCTTAATTACCCCTTTCTG 916 Target: 681915 -ATTATTGATAATGTGTATTCTTGTCATGTTTCCATTCTTACTGGAAATG--CCTCCAGT 681971 |||||| ||||| ||| ||*||||*|*| ||*|||| ||||| |*||*|*| Query: 917 CATTATT--TAATG---ATT-TTCTCATATGT-CACTCTT-----AAATGTACTTCTAAT 964 Target: 681972 GTTTC----TCCATCAAATAGTAT-ACTGGCTCTAA 682002 *|||| |*|||||*||| || |*|||*||*|| Query: 965 TTTTCACTTTACATCACATA--ATGAATGGATCCAA 998 target_name: chr4 query_name: chr1 optimal_alignment_score: 280 suboptimal_alignment_score: 273 strand: + target_begin: 47000 target_end: 48059 query_begin: 2 query_end: 1001 Target: 47000 AAACATCTT-ATAGCTACTGGATTCTTTTTTGCCTATGTATTTA----TA-TATGT--G- 47050 |||||**|| ||*||*|| || | *|*| || ||||||| || || || | Query: 2 AAACAGGTTAATCGCCAC--GA--C---ATAG--TA-GTATTTAGAGTTACTA-GTAAGC 50 Target: 47051 CTGTAT----CTATGTAATGTCTA--TTTTTATAAAGCTCTAATTGACCTAGAGGAAAAT 47104 ||| || |||***||| |||| |||| |||| || ||| || Query: 51 CTG-ATGCCACTACACAAT-TCTAGCTTTT-------CTCT--TT-------AGG---AT 89 Target: 47105 GA--GTTT--TTGAATCAAATAT-TTTTTGAAGGGAAAGTAAAAACTGTGGTACATTGAA 47159 || |||| ||*|*||**||*| ||||*|||***|*||*||||| ||| | Query: 90 GATTGTTTCATTCAGTCTTATCTCTTTTAGAAAACATAGGAAAAA---------ATT-A- 138 Target: 47160 GTTCACATGACTAATCATTGAGAAATAAAAACAGACTTAGCAATTATTGGTAAAAAGCAG 47219 || |||| ||||||| || |*|||||*||||*|*|| Query: 139 -TT--------TAAT--------AATAAAA------TT-----TAATTGGCAAAATGAAG 170 Target: 47220 --ATG--TTAAAA-----TATAC--ATTTTTGTTCAGGGTTAAAGGA-T---TGTTCTGA 47264 ||| |||*|| |*|*| |||*|| |||||*|| |||| | ||||||*| Query: 171 GTATGGCTTATAAGAGTGTTTTCCTATTGTT-TTCAGTGT---AGGACTCACTGTTCTAA 226 Target: 47265 ATTA----GATA---A--GATAAAGCTAAAAGTTTAAACAAGTTATAA---AAAGTTTCT 47312 ||*| ||*| | |||***| ||||| |***|*|*||||||*| |*|*|**|| Query: 227 ATAACTGGGACACCCAAGGATTCTG-TAAAA-TGCCATCCAGTTATCATTTATATTCCCT 284 Target: 47313 A--T-AAAATTCATCTTGCCA-AAGAA---ATTTTGTCCATGAACATTAAATTACGAAAG 47365 | | ||||||||| | || |*|*| |||||*|*| |*||| |||||| |*|*| Query: 285 AACTCAAAATTCAT-T---CACATGTATTCATTTTTTTC-TAAAC---AAATTA-GCATG 335 Target: 47366 GTATTATATGTTTTTTTGGT--AAATTAAGCATTTAAATAATAGCACAACAAGGTA---- 47419 ||*| *||*|||| |||||**|| ||||*|||*|**|||| Query: 336 ----TAGA----ATTCTGGTTAAAATTTGGC---------ATAGAACACCCGGGTATTTT 378 Target: 47420 CTCTTAAGGCAC----TAATCTGCTCTTTAGCAAAATTTGTAAA--GTG--TTATAAACG 47471 *||*|||*|||| ||| ||| ||*|| ||**|*|||**|| ||| |||**||*| Query: 379 TTCATAATGCACCCAATAA-CTG-TCATT--CACTAATTGAGAATGGTGATTTAACAAAG 434 Target: 47472 GGTTTTACTTTTGTAAATTTTTTGAAACAATTGTGGCAAAA------TAAATAACATGGT 47525 | | |**|||| *||*||||||*|*||***||||| |***|||| |||| Query: 435 G-----A---TAATAAA-GTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC-TGGT 484 Target: 47526 AATCTG-GAAT-TCTATTTCATAACATCAAGTGT-TTTAA-------ACCTCTAACATTT 47575 *|*|| |**| |*|*|*| *| *| |||| |*||| |*****||*|||| Query: 485 -GTGTGTGTGTGTGTGTGT-GT---GT---GTGTGTGTAAGAGGGAGAGAGAGAAAATTT 536 Target: 47576 C-TTC---CCA-AAATCAAAC----TTCAGTTTCAAAATTGT--CTTTCCT---CGTGC- 47620 | *|| ||| |||||**|| ||| *|||| ||*| ||||||| |*||| Query: 537 CACTCCCTCCATAAATCTCACAGTATTC-TTTTC----TTTTTCCTTTCCTTTCCTTGCT 591 Target: 47621 CTGACTTT-TGAATGCTACAGAGGGC---CCCTGGAGTATCC-------AAAAGAGAGGT 47669 || *|||| | || |**|**|| ||*|**| |*||| ||||||*|**| Query: 592 CT-TCTTTCT-----CT-CCTATTGCTTTCCTTTCA-TTTCCTTCTCATAAAAGAAAAAT 643 Target: 47670 AAACTGGATTATTTGACATATTTAGTTACATGGGATTGCCAATCTTCTTTAGGTTATAT- 47728 ||| |*|||***|*|||***|**||*| |||*|*|||*||| |||| |||| Query: 644 -AAC---AATATAGAAAATAACAAAATATA---GATGGTCAACCTT-TTTA----ATATT 691 Target: 47729 -AGGTTA--TATTTTG--AT-----AAA-T-ATTCTATAGGTTATATTTTGATAAATGAT 47776 |||||| ||***|| || ||| | *||||*||| |*||**||||**|| || Query: 692 AAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTCTAG---AGATGCTGATGTAT-AT 747 Target: 47777 ACTAATATATGTTCCAAAATTGTATGAGATTTCTAATGTCTGAGTATATGCTATCAAAAT 47836 |||*|*||||*|| |*|*|||| |||*||| ***|||||||| || || Query: 748 ACTTACATATTTT---ACAGTGTA------TTCAAAT-AAAGAGTATAT--TA-CA---- 790 Target: 47837 TAAG--GTTT--TTATGT---TAAGTTATTGT-A--AAC----CACAGAGA-TT---ATC 47878 |||| *|*| ||*||| *||*|| |||| | ||| *||*| || || |*| Query: 791 TAAGACATATCCTTTTGTAACCAACTT-TTGTCATTAACAATTTACTG-GACTTGTCAAC 848 Target: 47879 AAACTTCTTTGTCAACTGTGTTTCTGACTATAA---CTACCCTGGACATTTTGTTATTCA 47935 |||| || ||*|*|||*|| |*|||||| |||| |**|||||||*||| Query: 849 AAAC--CT-----AAATCTGTATC-GTCTATAATGGCTAC---GTTCATTTTGGTAT--- 894 Target: 47936 AAGACAATTGTCTTGTTTAGATCCTTTTCAAGAGATAGTTTATAAGA--AGCTACAGAAC 47993 || | ||||**|| |*||*|||| *| *||**|||| |*|| **|| ||*| Query: 895 --GA-A----TCTTAATT--ACCCCTTTC-TG-CATTATTTA-ATGATTTTCT-CATA-- 939 Target: 47994 TGTGACAGGTGCTCTCAAATGCAGTTTTCCAA---ATAACTTTGGAGATCATGACAT--T 48048 ||| || ||||*|||||*| *|||*|| *|*||||| | |||*|||| | Query: 940 TGT--CA----CTCTTAAATGTA--CTTCTAATTTTTCACTTT--A---CATCACATAAT 986 Target: 48049 GAA---AT--AAAGTA 48059 ||| || ||| || Query: 987 GAATGGATCCAAA-TA 1001 target_name: chr5 query_name: chr1 optimal_alignment_score: 230 suboptimal_alignment_score: 199 strand: + target_begin: 8806 target_end: 9723 query_begin: 11 query_end: 974 Target: 8806 AATGGCCAGGGCACTGAGGAG-CTGTGGAAGAACTGGGGAAATCACCGAAACCCAGTAC- 8863 |||*||||*|*|| | ||*|| *|*|*||***||| *|*||*| |*| |**|||*||| Query: 11 AATCGCCACGACA-T-AGTAGTATTTAGAGTTACT--AGTAAGC-CTG-ATGCCACTACA 64 Target: 8864 CATTTCAGTGAGGCCATTCTC--CA--AAAACTCTCTC---CA-TCTTATTTCTT---G- 8911 ||*||| | | ||**||||| *| |**|*|*|*|| || ||||||*|||| | Query: 65 CAATTC--T-A-GCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 Target: 8912 ------GGGAAAGAGTTCTTCTACT--TACAATATGAT---CAACCTGA--TTAAG---A 8955 *|||||*|*||*|| ||*| ||*|||*|*|| |||**||| *||*| * Query: 121 AAACATAGGAAAAAATTATT-TAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTT 179 Target: 8956 AT-ATATTGGTTT-CTATAACTGTGATGCAGATTATAACTATACAAATGCCAATTACCAG 9013 || |*|*||*||| |||| ||| *|*|||**||**||| | |*|| || |*|* Query: 180 ATAAGAGTGTTTTCCTAT---TGT-TTTCAGTGTAGGACT---C-ACTG----TT-CTAA 226 Target: 9014 A-AGCTAAGCCACCC--TGATTC--CAAAAT---AT--AGTCTCACATTTCATGGTTTCC 9063 | |*||**|*||||| *||||| *||||| || ||| |**||||| || *|||| Query: 227 ATAACTGGGACACCCAAGGATTCTGTAAAATGCCATCCAGT-TATCATTT-AT--ATTCC 282 Target: 9064 TGGTA--TCAGAAATCCCTATGAGCCTG-A--GATTTTTTCCCTTAA-------AGCA-- 9109 *|| ||| ||||*|*| |*| |*|| | *|||||||*| ||| |||| Query: 283 --CTAACTCA-AAATTCAT-TCA-CATGTATTCATTTTTTTC--TAAACAAATTAGCATG 335 Target: 9110 ---AATACTG---AAGAT-----A-AGAA-ACC----AATTAATTTCATTGTTGC----- 9147 |||*||| ||*|| | |||| ||| *||| *||||| |**||| Query: 336 TAGAATTCTGGTTAAAATTTGGCATAGAACACCCGGGTATT-TTTTCA-TAATGCACCCA 393 Target: 9148 -TATCTTGT-AT---CCAATGGCATAA----AATCTATACTAACTTGATTAGAAA-TTCT 9197 ||*| ||| || |*|||*| |*|| *||*|| ||*|| *|||*|*||| ||*| Query: 394 ATAAC-TGTCATTCACTAATTG-AGAATGGTGATTTA-ACAAA--GGATAATAAAGTTAT 448 Target: 9198 G---CCAATG------AACAACT-T---TA--T--TGT-TTTGAGTGATG---------- 9229 | |||||| ||||*|| | || | ||| |*||*||| || Query: 449 GAAACCAATGCCACAAAACATCTGTCTCTAACTGGTGTGTGTGTGTG-TGTGTGTGTGTG 507 Target: 9230 -------AAGCCCCATTTGAGA-ATATAGGCTCAATGGCCTTGC-----TCT-----TA- 9270 |||****| |||| |*|*|***|||*| ||*|*| ||| || Query: 508 TGTGTGTAAGAGGGA---GAGAGAGAAAATTTCACT--CCCTCCATAAATCTCACAGTAT 562 Target: 9271 ACTGTTCTCTATGCAGTCACTTTCTTCTGCACTAAAGTGCCAATACAGATACTG-AATAC 9329 *||*||||*|*|*|**|| |||||*| |||*|| **|**|**|*| ||*|| **|*| Query: 563 TCTTTTCTTTTTCCTTTC-CTTTCCT-TGCTCT--TCTTTCTCTCC---TATTGCTTTCC 615 Target: 9330 ATTGATTTAAAT-ACATAGATATATAAATA--GATAT-TTAAATATGC--AATATATATG 9383 *||*||||***| *|||| |*|*|*||||| *|||| **||||| *| ||||||*||| Query: 616 TTTCATTTCCTTCTCATA-AAAGAAAAATAACAATATAGAAAATA-ACAAAATATAGATG 673 Target: 9384 G--ATAC---TTTATATATT--GATT---TAAA----CATTTTCC--------TCTCATA 9421 | | || |||| ||||| |*|| |||| ||||*||| |||| || Query: 674 GTCA-ACCTTTTTA-ATATTAAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTC-TA 730 Target: 9422 GA-----TGA--AAAATCACTCTAACATGTATTGATGGCTTCACA-AGAAATCATTTACA 9473 || ||| *|*|| ||| | ||| |||| || ||| *|*|*|||**||*| Query: 731 GAGATGCTGATGTATAT-ACT-T-ACA--TATT------TT-ACAGTGTATTCAAATAAA 778 Target: 9474 GAAAATAATTGCATATGATACAGT--GTTTGTGCCAAAATGTATTCATGGCTTTAAAAAC 9531 ||**|| |||*||||*||*|*| | *|||||**|*||*| CPU time: 386.145492 seconds || ||*|*||||*|| Query: 779 GAGTAT-ATTACATAAGACATA-TCCTTTTGTAACCAACT---TT--TGTCATTAACAA- 830 Target: 9532 TTCAGTGGAAATGTCTATTCAGATCCCTAGCCCATTGTTAAATTGGTTTCTGTTTTCTTG 9591 ||*|*||||**||||*| || |*|| |||||**||*|| | ||| Query: 831 TTTACTGGACTTGTCAA--CA-AACC------------TAAATCTGTATC-G---TCT-- 869 Target: 9592 CTAAGTTTGAGCTGC-TTATAGATGATGGATATTGACCCCTTATAGATGTTGGATATTGA 9650 *||| || |||*| || *||**||| || ||| ||*|| | ||| | Query: 870 ATAA---TG-GCTACGTT---CATTTTGG-TA-TGA----------ATCTT--A-ATT-A 906 Target: 9651 CCCC-TTGTGGATGTATGGCCGGTGCTTTTCCCAGTATTTAGGTCATCTCTGCA---CAC 9706 |||| ||*||*|| ||| ****||*|||||*|| ||| |||| ||||**| *|| Query: 907 CCCCTTTCTGCAT-TAT--TTAATGATTTTCTCA-TAT----GTCA-CTCTTAAATGTAC 957 Target: 9707 TGTTGATTGTTTC-CTTT 9723 |**|*||| |||| |||| Query: 958 TTCTAATT-TTTCACTTT 974 make[1]: Leaving directory '/build/reproducible-path/libssw-1.2.5' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/libssw-1.2.5' sed 's/@DEB_HOST_MULTIARCH@/i386-linux-gnu/g' debian/libssw1.install.in > debian/libssw1.install sed 's/@DEB_HOST_MULTIARCH@/i386-linux-gnu/g' debian/libssw-dev.install.in > debian/libssw-dev.install sed -e 's/@DEB_HOST_MULTIARCH@/i386-linux-gnu/g' \ -e 's/@DEB_JAVA_PKG_VERSION@/1.2.5/g' debian/libssw-dev.links.in > debian/libssw-dev.links sed 's/@DEB_HOST_MULTIARCH@/i386-linux-gnu/g' debian/libssw-java.install.in > debian/libssw-java.install sed -e 's/@DEB_HOST_MULTIARCH@/i386-linux-gnu/g' \ -e 's/@DEB_JAVA_PKG_VERSION@/1.2.5/g' debian/libssw-java.links.in > debian/libssw-java.links mv src/ssw.jar src/ssw-1.2.5.jar dh_auto_install make[1]: Leaving directory '/build/reproducible-path/libssw-1.2.5' dh_install jh_installjavadoc dh_installdocs dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/libssw-1.2.5' LD_LIBRARY_PATH=`pwd`/src help2man --version-string=' ' --help-option=' ' \ -I debian/extra-man-info.txt \ -N -n 'fast Smith-Waterman aligner' \ --no-discard-stderr src/ssw-align \ | fgrep -v ERROR > debian/ssw-align.1 dh_installman make[1]: Leaving directory '/build/reproducible-path/libssw-1.2.5' dh_perl dh_link jh_installlibs jh_classpath jh_manifest jh_exec jh_depends mh_installpoms mh_linkjars --skip-clean-poms dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libssw1/DEBIAN/symbols doesn't match completely debian/libssw1.symbols --- debian/libssw1.symbols (libssw1_1.2.5-1_i386) +++ dpkg-gensymbols52PZiW 2024-11-20 14:28:12.170105510 -1200 @@ -21,7 +21,8 @@ _ZNK20StripedSmithWaterman7Aligner13TranslateBaseEPKcRKiPa@Base 1.1 _ZNK20StripedSmithWaterman7Aligner5AlignEPKcRKNS_6FilterEPNS_9AlignmentEi@Base 1.2.4 _ZNK20StripedSmithWaterman7Aligner5AlignEPKcS2_RKiRKNS_6FilterEPNS_9AlignmentEi@Base 1.2.4 - (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 1.1 + _ZNSt6vectorIjSaIjEE17_M_realloc_appendIJRKjEEEvDpOT_@Base 1.2.5-1 +#MISSING: 1.2.5-1# (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 1.1 align_destroy@Base 1.1 encoded_ops@Base 1.2.4 init_destroy@Base 1.1 dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libssw1' in '../libssw1_1.2.5-1_i386.deb'. dpkg-deb: building package 'libssw1-dbgsym' in '../libssw1-dbgsym_1.2.5-1_i386.deb'. dpkg-deb: building package 'libssw-dev' in '../libssw-dev_1.2.5-1_i386.deb'. dpkg-deb: building package 'libssw-java' in '../libssw-java_1.2.5-1_i386.deb'. dpkg-deb: building package 'libssw-java-dbgsym' in '../libssw-java-dbgsym_1.2.5-1_i386.deb'. dpkg-deb: building package 'ssw-align' in '../ssw-align_1.2.5-1_i386.deb'. dpkg-deb: building package 'ssw-align-dbgsym' in '../ssw-align-dbgsym_1.2.5-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../libssw_1.2.5-1_i386.buildinfo dpkg-genchanges --build=binary -O../libssw_1.2.5-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/7621 and its subdirectories I: Current time: Wed Nov 20 14:28:17 -12 2024 I: pbuilder-time-stamp: 1732156097 Thu Nov 21 02:28:18 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net. Thu Nov 21 02:28:18 UTC 2024 I: Preparing to do remote build '2' on ionos16-i386.debian.net. Thu Nov 21 02:28:18 UTC 2024 - checking /var/lib/jenkins/offline_nodes if ionos16-i386.debian.net is marked as down. Thu Nov 21 02:28:18 UTC 2024 - checking via ssh if ionos16-i386.debian.net is up. removed '/tmp/read-only-fs-test-Frq0pM' ==================================================================================== Wed Dec 24 08:51:19 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos16-i386, called using "2 libssw experimental /srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx 1.2.5-1" as arguments. Wed Dec 24 08:51:19 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-NoEWf8hS" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Dec 24 08:51:20 UTC 2025 I: Downloading source for experimental/libssw=1.2.5-1 Reading package lists... NOTICE: 'libssw' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libssw.git Please use: git clone https://salsa.debian.org/med-team/libssw.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 12.4 MB of source archives. Get:1 http://cdn-fastly.deb.debian.org/debian experimental/main libssw 1.2.5-1 (dsc) [2393 B] Get:2 http://cdn-fastly.deb.debian.org/debian experimental/main libssw 1.2.5-1 (tar) [12.4 MB] Get:3 http://cdn-fastly.deb.debian.org/debian experimental/main libssw 1.2.5-1 (diff) [15.3 kB] Fetched 12.4 MB in 1s (20.4 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'libssw' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libssw.git Please use: git clone https://salsa.debian.org/med-team/libssw.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 12.4 MB of source archives. Get:1 http://cdn-fastly.deb.debian.org/debian experimental/main libssw 1.2.5-1 (dsc) [2393 B] Get:2 http://cdn-fastly.deb.debian.org/debian experimental/main libssw 1.2.5-1 (tar) [12.4 MB] Get:3 http://cdn-fastly.deb.debian.org/debian experimental/main libssw 1.2.5-1 (diff) [15.3 kB] Fetched 12.4 MB in 1s (20.4 MB/s) Download complete and in download only mode ============================================================================= Re-Building libssw in experimental on i386 on ionos16-i386 now. Date: Wed Dec 24 09:51:20 CET 2025 Date UTC: Wed Dec 24 08:51:20 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx/pbuilderrc_TrV7 + case ${ARCH} in + let NUM_CPU-=3 + case $ARCH in + locale=de_CH + language=de + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' libssw = debian-installer -o libssw = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' libssw = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx/pbuilderrc_TrV7 --distribution experimental --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx/b2 --logfile b2/build.log libssw_1.2.5-1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Dec 24 22:51:21 +14 2025 I: pbuilder-time-stamp: 1766566281 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [libssw_1.2.5-1.dsc] I: copying [./libssw_1.2.5.orig.tar.gz] I: copying [./libssw_1.2.5-1.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Aug 14 14:33:35 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libssw_1.2.5-1.dsc: no acceptable signature found dpkg-source: info: extracting libssw in libssw-1.2.5 dpkg-source: info: unpacking libssw_1.2.5.orig.tar.gz dpkg-source: info: unpacking libssw_1.2.5-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying build_all_libs.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying rename_tool.patch dpkg-source: info: applying simde.patch dpkg-source: info: applying malloc I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/51848/tmp/hooks/D01_modify_environment starting debug: Running on ionos16-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 24 08:51 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/51848/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/51848/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 ' DIRSTACK=() DISTRIBUTION=experimental EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=00d3d6a9e5fe4991b6b32919266e9c34 LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=51848 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx/pbuilderrc_TrV7 --distribution experimental --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx/b2 --logfile b2/build.log libssw_1.2.5-1.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/51848/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), default-jdk-headless, javahelper, help2man, zlib1g-dev, libsimde-dev, maven-repo-helper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19952 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on default-jdk-headless; however: Package default-jdk-headless is not installed. pbuilder-satisfydepends-dummy depends on javahelper; however: Package javahelper is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on maven-repo-helper; however: Package maven-repo-helper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} binfmt-support{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} dctrl-tools{a} debhelper{a} default-jdk-headless{a} default-jre-headless{a} devscripts{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dirmngr{a} dwz{a} fastjar{a} file{a} gettext{a} gettext-base{a} gnupg{a} gnupg-l10n{a} gpg{a} gpg-agent{a} gpgconf{a} gpgsm{a} groff-base{a} help2man{a} intltool-debian{a} jarwrapper{a} java-common{a} javahelper{a} libarchive-zip-perl{a} libassuan9{a} libb-hooks-op-check-perl{a} libclass-method-modifiers-perl{a} libclass-xsaccessor-perl{a} libclone-perl{a} libcom-err2{a} libdebhelper-perl{a} libdevel-callchecker-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libexpat1{a} libfile-dirlist-perl{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-touch-perl{a} libfile-which-perl{a} libgssapi-krb5-2{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libimport-into-perl{a} libio-html-perl{a} libio-pty-perl{a} libio-socket-ssl-perl{a} libipc-run-perl{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libksba8{a} liblcms2-2{a} libldap-2.5-0{a} liblocale-gettext-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libmodule-runtime-perl{a} libmoo-perl{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnpth0t64{a} libnsl2{a} libnspr4{a} libnss3{a} libparams-classify-perl{a} libpcsclite1{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librole-tiny-perl{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libsub-quote-perl{a} libtimedate-perl{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml2{a} m4{a} man-db{a} maven-repo-helper{a} media-types{a} netbase{a} openjdk-21-jdk-headless{a} openjdk-21-jre-headless{a} openssl{a} patchutils{a} perl-openssl-defaults{a} pinentry-curses{a} po-debconf{a} python3{a} python3-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} wdiff{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl debian-keyring dput dput-ng dupload equivs gnupg-utils gpg-wks-client krb5-locales libarchive-cpio-perl libasound2t64 libcups2t64 libdata-dump-perl libdistro-info-perl libfontconfig1 libfreetype6 libgit-wrapper-perl libgitlab-api-v4-perl libharfbuzz0b libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libio-compress-brotli-perl libjson-perl libldap-common liblist-compare-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libnamespace-clean-perl liboss4-salsa-asound2 libsasl2-modules libsoap-lite-perl libstring-shellquote-perl libxstring-perl licensecheck lintian lynx pristine-tar python3-apt python3-debian python3-magic python3-requests python3-unidiff python3-xdg strace unzip wget 0 packages upgraded, 130 newly installed, 0 to remove and 0 not upgraded. Need to get 168 MB of archives. After unpacking 443 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 binfmt-support i386 2.2.2-7 [65.8 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 liblocale-gettext-perl i386 1.07-7+b1 [15.4 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 libpython3.12-minimal i386 3.12.7-3 [814 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.6.4-1 [107 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 python3.12-minimal i386 3.12.7-3 [2236 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 python3-minimal i386 3.12.7-1 [26.8 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 media-types all 10.1.0 [26.9 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 netbase all 6.4 [12.8 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 tzdata all 2024b-3 [255 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 libcom-err2 i386 1.47.1-1+b1 [23.4 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Get: 15 http://deb.debian.org/debian unstable/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 libtirpc3t64 i386 1.3.4+ds-1.3+b1 [90.5 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 libnsl2 i386 1.3.0-3+b3 [42.7 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 readline-common all 8.2-5 [69.3 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 libreadline8t64 i386 8.2-5 [173 kB] Get: 22 http://deb.debian.org/debian unstable/main i386 libpython3.12-stdlib i386 3.12.7-3 [1964 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 python3.12 i386 3.12.7-3 [671 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 libpython3-stdlib i386 3.12.7-1 [9712 B] Get: 25 http://deb.debian.org/debian unstable/main i386 python3 i386 3.12.7-1 [27.8 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 openssl i386 3.3.2-2 [1387 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 ca-certificates all 20240203 [158 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 35 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.2-11 [95.6 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-4 [293 kB] Get: 38 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 39 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 40 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 41 http://deb.debian.org/debian unstable/main i386 autopoint all 0.22.5-2 [723 kB] Get: 42 http://deb.debian.org/debian unstable/main i386 ca-certificates-java all 20240118 [11.6 kB] Get: 43 http://deb.debian.org/debian unstable/main i386 dctrl-tools i386 2.24-3 [105 kB] Get: 44 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 45 http://deb.debian.org/debian unstable/main i386 libtool all 2.4.7-8 [517 kB] Get: 46 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 47 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 48 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 49 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 50 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 51 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 52 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-5+b1 [9583 kB] Get: 53 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 54 http://deb.debian.org/debian unstable/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 55 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 56 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 57 http://deb.debian.org/debian unstable/main i386 debhelper all 13.20 [915 kB] Get: 58 http://deb.debian.org/debian unstable/main i386 java-common all 0.76 [6776 B] Get: 59 http://deb.debian.org/debian unstable/main i386 liblcms2-2 i386 2.16-2 [171 kB] Get: 60 http://deb.debian.org/debian unstable/main i386 libjpeg62-turbo i386 1:2.1.5-3+b1 [171 kB] Get: 61 http://deb.debian.org/debian unstable/main i386 libnspr4 i386 2:4.36-1 [119 kB] Get: 62 http://deb.debian.org/debian unstable/main i386 libnss3 i386 2:3.106-1 [1504 kB] Get: 63 http://deb.debian.org/debian unstable/main i386 libpcsclite1 i386 2.3.0-3 [57.1 kB] Get: 64 http://deb.debian.org/debian unstable/main i386 openjdk-21-jre-headless i386 21.0.5+11-1 [43.2 MB] Get: 65 http://deb.debian.org/debian unstable/main i386 default-jre-headless i386 2:1.21-76 [3192 B] Get: 66 http://deb.debian.org/debian unstable/main i386 openjdk-21-jdk-headless i386 21.0.5+11-1 [85.4 MB] Get: 67 http://deb.debian.org/debian unstable/main i386 default-jdk-headless i386 2:1.21-76 [1124 B] Get: 68 http://deb.debian.org/debian unstable/main i386 libassuan9 i386 3.0.1-2 [62.4 kB] Get: 69 http://deb.debian.org/debian unstable/main i386 gpgconf i386 2.2.45-2 [127 kB] Get: 70 http://deb.debian.org/debian unstable/main i386 libksba8 i386 1.6.7-2+b1 [142 kB] Get: 71 http://deb.debian.org/debian unstable/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8 [20.6 kB] Get: 72 http://deb.debian.org/debian unstable/main i386 libsasl2-2 i386 2.1.28+dfsg1-8 [61.0 kB] Get: 73 http://deb.debian.org/debian unstable/main i386 libldap-2.5-0 i386 2.5.18+dfsg-3+b1 [200 kB] Get: 74 http://deb.debian.org/debian unstable/main i386 libnpth0t64 i386 1.6-3.1+b1 [18.3 kB] Get: 75 http://deb.debian.org/debian unstable/main i386 dirmngr i386 2.2.45-2 [396 kB] Get: 76 http://deb.debian.org/debian unstable/main i386 gnupg-l10n all 2.2.45-2 [705 kB] Get: 77 http://deb.debian.org/debian unstable/main i386 gpg i386 2.2.45-2 [573 kB] Get: 78 http://deb.debian.org/debian unstable/main i386 pinentry-curses i386 1.2.1-4+b1 [80.4 kB] Get: 79 http://deb.debian.org/debian unstable/main i386 gpg-agent i386 2.2.45-2 [269 kB] Get: 80 http://deb.debian.org/debian unstable/main i386 gpgsm i386 2.2.45-2 [275 kB] Get: 81 http://deb.debian.org/debian unstable/main i386 gnupg all 2.2.45-2 [376 kB] Get: 82 http://deb.debian.org/debian unstable/main i386 libfile-dirlist-perl all 0.05-3 [7600 B] Get: 83 http://deb.debian.org/debian unstable/main i386 libfile-which-perl all 1.27-2 [15.1 kB] Get: 84 http://deb.debian.org/debian unstable/main i386 libfile-homedir-perl all 1.006-2 [42.4 kB] Get: 85 http://deb.debian.org/debian unstable/main i386 libfile-touch-perl all 0.12-2 [8816 B] Get: 86 http://deb.debian.org/debian unstable/main i386 libio-pty-perl i386 1:1.20-1+b2 [35.8 kB] Get: 87 http://deb.debian.org/debian unstable/main i386 libipc-run-perl all 20231003.0-2 [101 kB] Get: 88 http://deb.debian.org/debian unstable/main i386 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get: 89 http://deb.debian.org/debian unstable/main i386 libclass-xsaccessor-perl i386 1.19-4+b4 [37.5 kB] Get: 90 http://deb.debian.org/debian unstable/main i386 libb-hooks-op-check-perl i386 0.22-3+b2 [10.7 kB] Get: 91 http://deb.debian.org/debian unstable/main i386 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get: 92 http://deb.debian.org/debian unstable/main i386 libdevel-callchecker-perl i386 0.009-1+b1 [16.2 kB] Get: 93 http://deb.debian.org/debian unstable/main i386 libparams-classify-perl i386 0.015-2+b4 [23.1 kB] Get: 94 http://deb.debian.org/debian unstable/main i386 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 95 http://deb.debian.org/debian unstable/main i386 libimport-into-perl all 1.002005-2 [11.3 kB] Get: 96 http://deb.debian.org/debian unstable/main i386 librole-tiny-perl all 2.002004-1 [21.4 kB] Get: 97 http://deb.debian.org/debian unstable/main i386 libsub-quote-perl all 2.006008-1 [21.8 kB] Get: 98 http://deb.debian.org/debian unstable/main i386 libmoo-perl all 2.005005-1 [58.0 kB] Get: 99 http://deb.debian.org/debian unstable/main i386 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 100 http://deb.debian.org/debian unstable/main i386 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 101 http://deb.debian.org/debian unstable/main i386 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 102 http://deb.debian.org/debian unstable/main i386 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 103 http://deb.debian.org/debian unstable/main i386 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 104 http://deb.debian.org/debian unstable/main i386 liburi-perl all 5.30-1 [105 kB] Get: 105 http://deb.debian.org/debian unstable/main i386 libhtml-parser-perl i386 3.83-1+b1 [101 kB] Get: 106 http://deb.debian.org/debian unstable/main i386 libhtml-tree-perl all 5.07-3 [211 kB] Get: 107 http://deb.debian.org/debian unstable/main i386 libclone-perl i386 0.47-1+b1 [14.0 kB] Get: 108 http://deb.debian.org/debian unstable/main i386 libio-html-perl all 1.004-3 [16.2 kB] Get: 109 http://deb.debian.org/debian unstable/main i386 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 110 http://deb.debian.org/debian unstable/main i386 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 111 http://deb.debian.org/debian unstable/main i386 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 112 http://deb.debian.org/debian unstable/main i386 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 113 http://deb.debian.org/debian unstable/main i386 perl-openssl-defaults i386 7+b2 [6720 B] Get: 114 http://deb.debian.org/debian unstable/main i386 libnet-ssleay-perl i386 1.94-2 [340 kB] Get: 115 http://deb.debian.org/debian unstable/main i386 libio-socket-ssl-perl all 2.089-1 [223 kB] Get: 116 http://deb.debian.org/debian unstable/main i386 libnet-http-perl all 6.23-1 [23.9 kB] Get: 117 http://deb.debian.org/debian unstable/main i386 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 118 http://deb.debian.org/debian unstable/main i386 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 119 http://deb.debian.org/debian unstable/main i386 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 120 http://deb.debian.org/debian unstable/main i386 libwww-perl all 6.77-1 [183 kB] Get: 121 http://deb.debian.org/debian unstable/main i386 patchutils i386 0.4.2-1 [79.6 kB] Get: 122 http://deb.debian.org/debian unstable/main i386 wdiff i386 1.2.2-6 [120 kB] Get: 123 http://deb.debian.org/debian unstable/main i386 devscripts all 2.24.3 [1079 kB] Get: 124 http://deb.debian.org/debian unstable/main i386 fastjar i386 2:0.98-7 [47.3 kB] Get: 125 http://deb.debian.org/debian unstable/main i386 help2man i386 1.49.3 [198 kB] Get: 126 http://deb.debian.org/debian unstable/main i386 jarwrapper all 0.80 [9692 B] Get: 127 http://deb.debian.org/debian unstable/main i386 javahelper all 0.80 [80.4 kB] Get: 128 http://deb.debian.org/debian unstable/main i386 libsimde-dev all 0.8.2-1 [465 kB] Get: 129 http://deb.debian.org/debian unstable/main i386 maven-repo-helper all 1.11 [142 kB] Get: 130 http://deb.debian.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Fetched 168 MB in 4s (44.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpipeline1:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19952 files and directories currently installed.) Preparing to unpack .../0-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package binfmt-support. Preparing to unpack .../1-binfmt-support_2.2.2-7_i386.deb ... Unpacking binfmt-support (2.2.2-7) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../2-liblocale-gettext-perl_1.07-7+b1_i386.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libpython3.12-minimal:i386. Preparing to unpack .../3-libpython3.12-minimal_3.12.7-3_i386.deb ... Unpacking libpython3.12-minimal:i386 (3.12.7-3) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../4-libexpat1_2.6.4-1_i386.deb ... Unpacking libexpat1:i386 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../5-python3.12-minimal_3.12.7-3_i386.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:i386 (3.12.7-3) ... Setting up libexpat1:i386 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20310 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_i386.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... 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Setting up java-common (0.76) ... Setting up libdynaloader-functions-perl (0.004-1) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up libio-pty-perl (1:1.20-1+b2) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libclone-perl:i386 (0.47-1+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.20) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:i386 (1:5.45-3+b1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up perl-openssl-defaults:i386 (7+b2) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libcom-err2:i386 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:i386 (0.192-4) ... Setting up libkrb5support0:i386 (1.21.3-3) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Dec 24 08:52:10 UTC 2025. Universal Time is now: Wed Dec 24 08:52:10 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libjpeg62-turbo:i386 (1:2.1.5-3+b1) ... Setting up libnspr4:i386 (2:4.36-1) ... Setting up gnupg-l10n (2.2.45-2) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.22.5-2) ... Setting up binfmt-support (2.2.2-7) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libb-hooks-op-check-perl:i386 (0.22-3+b2) ... Setting up libipc-run-perl (20231003.0-2) ... Setting up libpcsclite1:i386 (2.3.0-3) ... Setting up libk5crypto3:i386 (1.21.3-3) ... Setting up libsasl2-2:i386 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up libtimedate-perl (2.3300-2) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b2) ... Setting up libassuan9:i386 (3.0.1-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up netbase (6.4) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b4) ... Setting up libkrb5-3:i386 (1.21.3-3) ... Setting up libfile-dirlist-perl (0.05-3) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up openssl (3.3.2-2) ... Setting up readline-common (8.2-5) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liburi-perl (5.30-1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up libfile-touch-perl (0.12-2) ... Setting up dctrl-tools (2.24-3) ... Setting up libnet-ssleay-perl:i386 (1.94-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up pinentry-curses (1.2.1-4+b1) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.22.5-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up jarwrapper (0.80) ... Setting up libtool (2.4.7-8) ... Setting up libnet-http-perl (6.23-1) ... Setting up libnss3:i386 (2:3.106-1) ... Setting up libdevel-callchecker-perl:i386 (0.009-1+b1) ... Setting up libldap-2.5-0:i386 (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up patchutils (0.4.2-1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libgssapi-krb5-2:i386 (1.21.3-3) ... Setting up libreadline8t64:i386 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-5) ... Setting up libhtml-parser-perl:i386 (3.83-1+b1) ... Setting up gpgconf (2.2.45-2) ... Setting up ca-certificates-java (20240118) ... No JRE found. Skipping Java certificates setup. Setting up libio-socket-ssl-perl (2.089-1) ... Setting up gpg (2.2.45-2) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up gpg-agent (2.2.45-2) ... Setting up openjdk-21-jre-headless:i386 (21.0.5+11-1) ... update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libtirpc3t64:i386 (1.3.4+ds-1.3+b1) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:i386 (0.015-2+b4) ... Setting up gpgsm (2.2.45-2) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up dirmngr (2.2.45-2) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libnsl2:i386 (1.3.0-3+b3) ... Setting up gnupg (2.2.45-2) ... Setting up libpython3.12-stdlib:i386 (3.12.7-3) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:i386 (3.12.7-1) ... Setting up python3 (3.12.7-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.77-1) ... Setting up devscripts (2.24.3) ... Setting up javahelper (0.80) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates-java (20240118) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:BJCA_Global_Root_CA1.pem Adding debian:BJCA_Global_Root_CA2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:CommScope_Public_Trust_ECC_Root-01.pem Adding debian:CommScope_Public_Trust_ECC_Root-02.pem Adding debian:CommScope_Public_Trust_RSA_Root-01.pem Adding debian:CommScope_Public_Trust_RSA_Root-02.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustAsia_Global_Root_CA_G3.pem Adding debian:TrustAsia_Global_Root_CA_G4.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up openjdk-21-jdk-headless:i386 (21.0.5+11-1) ... update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jwebserver to provide /usr/bin/jwebserver (jwebserver) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up default-jre-headless (2:1.21-76) ... Setting up maven-repo-helper (1.11) ... Setting up default-jdk-headless (2:1.21-76) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20240118) ... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/51848/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for experimental I: user script /srv/workspace/pbuilder/51848/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/libssw-1.2.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libssw_1.2.5-1_source.changes dpkg-buildpackage: info: source package libssw dpkg-buildpackage: info: source version 1.2.5-1 dpkg-buildpackage: info: source distribution experimental dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --with javahelper --with jh_maven_repo_helper debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/libssw-1.2.5' rm -f debian/libssw*install debian/libssw*links debian/ssw-align.1 dh_auto_clean --sourcedirectory src cd src && make -j21 clean make[2]: Entering directory '/build/reproducible-path/libssw-1.2.5/src' rm -f ssw.o ssw_cpp.o ssw-align libssw.so.1 example_c example_cpp libsswjni.so *.jar ssw/Aligner.class ssw/Alignment.class *~ libssw.a make[2]: Leaving directory '/build/reproducible-path/libssw-1.2.5/src' make[1]: Leaving directory '/build/reproducible-path/libssw-1.2.5' jh_clean Duplicate specification "unlink|u" for option "u" dh_clean debian/rules binary dh binary --with javahelper --with jh_maven_repo_helper dh_update_autotools_config dh_autoreconf jh_linkjars debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/libssw-1.2.5' dh_auto_build --sourcedirectory src -- default java cd src && make -j21 "INSTALL=install --strip-program=true" default java make[2]: Entering directory '/build/reproducible-path/libssw-1.2.5/src' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libssw-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -shared -rdynamic -Wl,-soname,libssw.so.1 -o libssw.so.1 ssw.c ssw.h ssw_cpp.h ssw_cpp.cpp -Wl,-z,relro -Wl,-z,now cc -c -o ssw.o ssw.c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libssw-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -pipe -O2 g++ -c -o ssw_cpp.o ssw_cpp.cpp -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libssw-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 javac ssw/Aligner.java javac ssw/Alignment.java cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libssw-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -pipe -O2 -I"/usr/lib/jvm/default-java/include" -I"/usr/lib/jvm/default-java/include/linux" -I/usr/lib/jvm/default-java/include/ -I/usr/lib/jvm/default-java/include/linux -fPIC -shared -rdynamic -o libsswjni.so sswjni.c ssw.c -Wl,-z,relro -Wl,-z,now ssw.c: In function 'sw_sse2_byte': ssw.c:231:17: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 231 | __m128i vZero = _mm_set1_epi32(0); | ^~~~~ ssw.c: In function 'sw_sse2_byte': ssw.c:231:17: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 231 | __m128i vZero = _mm_set1_epi32(0); | ^~~~~ ssw.c: In function 'alignment_end* sw_sse2_byte(const int8_t*, int8_t, int32_t, int32_t, uint8_t, uint8_t, const __m128i*, uint8_t, uint8_t, int32_t)': ssw.c:266:20: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 266 | vH = _mm_slli_si128 (vH, 1); /* Shift the 128-bit value in vH left by 1 byte. */ | ^ jar cvf ssw.jar ssw/Aligner.class ssw/Alignment.class added manifest adding: ssw/Aligner.class(in = 2486) (out= 1527)(deflated 38%) adding: ssw/Alignment.class(in = 1029) (out= 602)(deflated 41%) ar rcs libssw.a ssw.o ssw_cpp.o cc -o example_c ssw.o example.c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libssw-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -pipe -O2 -Wl,-z,relro -Wl,-z,now -lm -lz g++ -o example_cpp example.cpp ssw.o ssw_cpp.o -g -O2 -ffile-prefix-map=/build/reproducible-path/libssw-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lz cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libssw-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -pipe -O2 -o ssw-align main.c kseq.h -L. -lssw -lm -lz -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/libssw-1.2.5/src' make[1]: Leaving directory '/build/reproducible-path/libssw-1.2.5' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libssw-1.2.5' LD_PRELOAD="$LD_PRELOAD /build/reproducible-path/libssw-1.2.5/src/libssw.so" src/ssw-align -c demo/ref.fa demo/1k.fa ERROR: ld.so: object '/build/reproducible-path/libssw-1.2.5/src/libssw.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. target_name: chr1 query_name: chr1 optimal_alignment_score: 2002 suboptimal_alignment_score: 1000 strand: + target_begin: 1 target_end: 1001 query_begin: 1 query_end: 1001 Target: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 Target: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 Target: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 Target: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 Target: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 Target: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 Target: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 Target: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 Target: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 Target: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 Target: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 Target: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 Target: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 Target: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 Target: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 Target: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Query: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 Target: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 ||||||||||||||||||||||||||||||||||||||||| Query: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 target_name: chr2 query_name: chr1 optimal_alignment_score: 312 suboptimal_alignment_score: 311 strand: + target_begin: 4437430 target_end: 4438470 query_begin: 9 query_end: 971 Target: 4437430 TTGAT-TCCACAGATTCCAATAGAATAGTTTGAAGATGGAACAATTGAGAATTCTGAATG 4437488 ||*|| *|||| || | |||| ||||*|**||| |**||*|*| ||**||| ||| Query: 9 TTAATCGCCAC-GA--C--ATAG--TAGTATTTAGA-GTTACTAGT---AAGCCTG-ATG 56 Target: 4437489 ---CTAAGCTAAT--TAGATATGTTTTCTTTGAAGGAAAACTACATTGTATTATTTTGCC 4437543 |||**| ||| |||*| | ||*||||| |||| | *|||||*|*|||**| Query: 57 CCACTACAC-AATTCTAGCT-T-TTCTCTTT--AGGA----T-GATTGTTTCATTCAG-- 104 Target: 4437544 TCCTCCCTCCTCCTAGAAGCCTT----TAAAATTCATGCATCATTTTAAAAGTTTTGAAA 4437599 ||*|**|| ||**|||||**|*| *|||||| || *|*||**||||| ||| || Query: 105 TCTTATCT-CTTTTAGAAAACATAGGAAAAAATT-AT--TTAATAATAAAA-TTT--AA- 156 Target: 4437600 TTTTTCAAGATTATGTTTAA-GTAT--ATTA-AATATTTTGTTCAGTCATCCCAATTAGT 4437655 ||**||| | ||| || |||| *||| ||*| *|||| |*||*||| || Query: 157 -TTGGCAA-A--ATG---AAGGTATGGCTTATAAGA--GTGTT------TTCCTATT-GT 200 Target: 4437656 TTTCAATG--G----CCCT-TTCCATTTAAAGAGTTTGGACATTCCATATAAAAAAG-AC 4437707 |||||*|| | |*|| ||| ||||*|**|*||||| *||| |**|****| |* Query: 201 TTTCAGTGTAGGACTCACTGTTC----TAAATAACTGGGACA-CCCA-AGGATTCTGTAA 254 Target: 4437708 AATGTCATCTACA-TTTTC-TTTGTTTT--CT---T---AATT-AT----ATCTTTTCCT 4437752 ||||*|||| || ||*|| |||*|*|| || | |||| || ||*|*|||*| Query: 255 AATGCCATC--CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCACATGTATTCAT 312 Target: 4437753 TTTTACAAATTTCTTAA-AAA-TAG-GTGTAAGATCTCTGATTTAACCTATGTGCGT--- 4437806 ||| |||||*|| ||| ||| *||| |||**|||| *||||**|*|| ||*| Query: 313 TTT------TTTCTAAACAAATTAGCATGT-AGAATTCTG-GTTAAAATTTG-GCATAGA 363 Target: 4437807 -C------TTAATTTTTCA----GCTTC---T--CTGTCATT---TTATT-AGATGTTTT 4437846 | *||*||||||| ||**| | |||||||| |*||| ||| Query: 364 ACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGA------ 417 Target: 4437847 TATTGT-TTTTAA------TTACTAAATTAATCTTAATCTATG-CTTATTATATCATTCT 4437898 ||*|| *||||| *||*||||*|*|| **||*|*||| |**|**|*|||**||| Query: 418 -ATGGTGATTTAACAAAGGATAATAAAGTTAT-GAAACCAATGCCACAAAACATCTGTCT 475 Target: 4437899 CCATTAC--GT-TATGGATACAACAACT-TG-GTGAATGTTTCTG----AGATTAACACT 4437949 | |*|| || |*||**| *| || |||**|||*|*|| |||***|*|** Query: 476 C--TAACTGGTGTGTGTGT-------GTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGA 526 Target: 4437950 AAAAATATTTAACAATCTCTCTCATTTTTATC----TTTTC-TTTCTTTTTCTCTTTGTC 4438004 *|*||*|||| ||*||*||| |||***|*|| |*||| |||||||||| |||| *| Query: 527 GAGAAAATTT--CACTCCCTC-CATAAATCTCACAGTATTCTTTTCTTTTTC-CTTT-CC 581 Target: 4438005 TTT-CTCACTCTCTATTTATCCTGTTACATCTTTGCTTCTATCTCTTTCTCTGTTTTTTT 4438063 ||| ||**|||| |*|||*| ||**|| |||||| || ||||| *|||**|| Query: 582 TTTCCTTGCTCT-TCTTTCT-CTCCTA-----TTGCTT---TC-CTTTC---ATTTCCTT 627 Target: 4438064 TTTTTAATATTTAAATAATGCTTCTGTCTGAGGAGGTTAAGAAGTGAAAGAAGACATTGT 4438123 *|**|||*|***|||||| |**|*| || || || | ||*||*|*|| Query: 628 CTCATAAAAGAAAAATAA-----CAATAT-AG------AA-AA-T--AACAAAATAT--- 668 Target: 4438124 GAGATGGAGAATCTTTATTAAGATAGAAG---AC--AAAGAGGGGATGAT-----GTGGA 4438173 ||||||**||*|||| ||||*|| *||| || ||| |*|**||*|| |||| Query: 669 -AGATGGTCAACCTTT-TTAATAT-TAAGGTTACCTAAA-ATGCCATTATCCAAAGTGG- 723 Target: 4438174 CACTT-TC-AG-GATG-TGGAATGGT---TACATACATTATT---CTGT-TA-TCACAAG 4438221 || || || |||| || || || |||*|||| |||| |*|| || ||| || Query: 724 ---TTCTCTAGAGATGCTG--AT-GTATATACTTACA-TATTTTACAGTGTATTCA-AA- 774 Target: 4438222 GTTAGCTAA-ACTCTCTTTCATAA-A-ATCTCTCTTGTTTCTTACTCCCTAAATCTCAAA 4438278 || || |*|*|*||*||||| | ||*|| || |||*|*|| | || || Query: 775 --TA---AAGAGTATATTACATAAGACATATC-CT--TTTGTAAC-C---AA--CT---- 816 Target: 4438279 TAAGTGACTAAAAAATGCCTGGA--TGACCCCAAACAGTAAGAATAGCTTGTA-GGTCTC 4438335 |**||*|*|||*||*|**||||| ||*|**||||| *|| ||| | |||| *||||* Query: 817 TTTGTCATTAACAATTTACTGGACTTGTCAACAAAC-CTA--AAT--C-TGTATCGTCTA 870 Target: 4438336 TGAAG---ATGTTATCTTTTGCCCTGGGAAGGTGGATTCCTATACTAACACCTGCACTTG 4438392 |*|*| |*|| ||*||| |||*| ||*|| || ||*|*||*||| || Query: 871 TAATGGCTACGT--TCATTT----TGGTA---TGAAT--CT-TAATTACCCCT----TT- 913 Target: 4438393 AAAAGGTGAACAAGATAATTTTGTATTTATTTTCTCACTA--CCACTGCAGGTAGCATGG 4438450 *|| | ||*||| ||*|*||||||||| || *|||| | *|| *||| Query: 914 -----CTG--C---ATTATT---TAATGATTTTCTCA-TATGTCACT-C--TTA-AATG- 954 Target: 4438451 GACACTTCTTTATTATTCAC 4438470 *||||| |*|||*||||| Query: 955 --TACTTC-TAATTTTTCAC 971 target_name: chr3 query_name: chr1 optimal_alignment_score: 291 suboptimal_alignment_score: 289 strand: + target_begin: 680970 target_end: 682002 query_begin: 9 query_end: 998 Target: 680970 TTAAATTGTCA--ACATGGTA-TATATGAAATGAATTGGGTTTATAATAGTAAACCAATC 681026 || |||*|*|| ||||*||| ||| |*| || || ||*||||||*|| |* Query: 9 TT-AATCGCCACGACATAGTAGTAT-TTA---GA-----GT---TACTAGTAAGCC--TG 53 Target: 681027 TTG-CATTCCTAAAA---TA--AATCCTATTTAG--TTATCGT--------GTGTTATTT 681070 *|| ||*|*| |*|| || **|*||*||||| |*||*|| ||*||| |* Query: 54 ATGCCACTAC-ACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTA-TC 111 Target: 681071 TCTT----AATACAGTGTTGGATTAAGTTTGCTATTTTTTATTTTAAAATTTTACATTAT 681126 |||| ||*||| |*|||**||*| || |||*||**||||| |||| || Query: 112 TCTTTTAGAAAACA---TAGGAAAAAAT----TA--TTTAATAATAAAA-TTTA----AT 157 Target: 681127 TTTCTTCAGTGA---TATTGACCTGT---AGTTTTCTTTCATTATACTGTTTTATCAGAT 681180 |**| **|*||| || ||*|*|*| |||*| |||| *||| ||||| |||| | Query: 158 TGGC-AAAATGAAGGTA-TGGCTTATAAGAGTGT--TTTC-CTAT--TGTTT--TCAG-T 207 Target: 681181 TTAGGTATCAGTGTTAT-AGTTTCT---TCATGAAAGGAAT---TAAGATGTTTTCCTTC 681233 *||||**|||*||||*| |*|**|| *||***|||||*| |||*||| ||*|| Query: 208 GTAGGACTCACTGTTCTAAATAACTGGGACACCCAAGGATTCTGTAAAATG----CCATC 263 Target: 681234 C-CTT-TCA---ATGTT------CTGAATAATCATACAGCAT-TA-TGACTATCTGCCAT 681280 | *|| ||| ||*|| ||*||*|*||||*|| ||| || |*|*|*|*| | Query: 264 CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCA-CATGTATTCATTTTTT----T 318 Target: 681281 TTAAATC--TTTAGAAT----AATTACCTTGTGAAACTATGTGGGCTTGGTGCTATTTTG 681334 *|||| | *||||*|| |||| ||*||*||| || |*|||*|*|**| | ***| Query: 319 CTAAA-CAAATTAGCATGTAGAATT--CTGGTTAAA--AT-TTGGCATAGAAC-A-CCCG 370 Target: 681335 TGTAGTATTTATC-TAATTGTTTCCTATA--TTTC-TT--CTA--TGAAATTGGTTGATT 681386 *||| | |||*|| ||| ||***||*||| |*|| || ||| |||*|*||| ||||| Query: 371 GGTA-T-TTTTTCATAA-TGCACCCAATAACTGTCATTCACTAATTGAGAATGG-TGATT 426 Target: 681387 TAATCTTTCTAACACTAATAAGATTAATTTGAGTAAACTTCATTTCTCTAGAAAATAATT 681446 ||| |*||***||||||**||| || |||| ||*|*| | |*||||*| | Query: 427 TAA-----CAAAGGATAATAAAGTTA---TG---AAAC--CAATGC-C-ACAAAACA--T 469 Target: 681447 AATTCATCAAATTAAATCAAATTTGAAATTTGATTTCAAATTTATTTGTGTCAAAGTAA- 681505 ***|| || |||*|****|*|| |*|| |*| *|*|*|*|||||****|||| Query: 470 CTGTC-TC----TAACTGGTGTGTG---TGTG-TGT---GTGTGTGTGTGTGTGTGTAAG 517 Target: 681506 A-GGAG-G--------TTTC-CT--GT-CATTTTAAAATTCTC----TGTTGTTTTAATA 681547 | |||| | |||| || *| || |||| |||| |*||*|||| *|* Query: 518 AGGGAGAGAGAGAAAATTTCACTCCCTCCA---TAAA--TCTCACAGTATTCTTTT-CTT 571 Target: 681548 GTAACTT--GTTT-CTTATTATTTATAACTTTAT---ATATT--TGTACTT---TTTCCT 681596 *|**||| *||| |||**|*|| ||||*| *|||| |*|*||| ||||| Query: 572 TTTCCTTTCCTTTCCTTGCTCTT-----CTTTCTCTCCTATTGCTTTCCTTTCATTTCC- 625 Target: 681597 TTTTTATCAAATG--AACT--GAGTTT------TAAC-----ATCGCAT--TTAA---TT 681636 ||*|*|| |||*| ||*| *|*|*| |||| ||*| || |*|| || Query: 626 TTCTCAT-AAAAGAAAAATAACAATATAGAAAATAACAAAATATAG-ATGGTCAACCTTT 683 Target: 681637 TTAATTATCTAATCTAAATCTAAAAGCTGATATTTGATTCAA-----TTGTC-AGAAATC 681690 |||| ||| |||**| *|*|||||| ||**||| ||*||| ||*|| |||*|| Query: 684 TTAA-TAT-TAAGGT-TACCTAAAA--TGCCATT--ATCCAAAGTGGTTCTCTAGAGAT- 735 Target: 681691 TCTTAAGTATATTGGGATCAACTTGGAAAAGTAAATTGACTTTAAACAGTACACTT--TA 681748 *||*|*|||||| |||| |*| | ||| || |||||**| || *| Query: 736 GCTGATGTATAT--------ACTT--ACA--T--ATT---TT---ACAGTGTA-TTCAAA 774 Target: 681749 TGAACTTTAAATTACAGATCAGATAT--TTTTAGTAA--AA-TTTTATCCAAACTAAGAT 681803 |*||***||*||||||*|**|*|||| |||| |||| || ||||*|| |*||| Query: 775 TAAAGAGTATATTACATAAGACATATCCTTTT-GTAACCAACTTTTGTC---ATTAA--- 827 Target: 681804 GCAATATGAGTATAATCACTGATTCAA-AAAGCTTCCTTTAGTGAGCATGAAATATC-TC 681861 |||| |*|*|**|*| || |||| ||| || || *|*| || |||| | Query: 828 -CAAT-TTACTGGACT---TG--TCAACAAA----CC--TA--AATC-TG---TATCGT- 867 Target: 681862 ACTATTTTAAT---T---TTAATATTGATTGTGTGTTAAAATAATAATAATTGCATTAT- 681914 ||| |||| | ||*||*||| ||*|| |||**||||*|***|*||*| Query: 868 -CTA---TAATGGCTACGTTCATTTTG---GTATG----AATCTTAATTACCCCTTTCTG 916 Target: 681915 -ATTATTGATAATGTGTATTCTTGTCATGTTTCCATTCTTACTGGAAATG--CCTCCAGT 681971 |||||| ||||| ||| ||*||||*|*| ||*|||| ||||| |*||*|*| Query: 917 CATTATT--TAATG---ATT-TTCTCATATGT-CACTCTT-----AAATGTACTTCTAAT 964 Target: 681972 GTTTC----TCCATCAAATAGTAT-ACTGGCTCTAA 682002 *|||| |*|||||*||| || |*|||*||*|| Query: 965 TTTTCACTTTACATCACATA--ATGAATGGATCCAA 998 target_name: chr4 query_name: chr1 optimal_alignment_score: 280 suboptimal_alignment_score: 273 strand: + target_begin: 47000 target_end: 48059 query_begin: 2 query_end: 1001 Target: 47000 AAACATCTT-ATAGCTACTGGATTCTTTTTTGCCTATGTATTTA----TA-TATGT--G- 47050 |||||**|| ||*||*|| || | *|*| || ||||||| || || || | Query: 2 AAACAGGTTAATCGCCAC--GA--C---ATAG--TA-GTATTTAGAGTTACTA-GTAAGC 50 Target: 47051 CTGTAT----CTATGTAATGTCTA--TTTTTATAAAGCTCTAATTGACCTAGAGGAAAAT 47104 ||| || |||***||| |||| |||| |||| || ||| || Query: 51 CTG-ATGCCACTACACAAT-TCTAGCTTTT-------CTCT--TT-------AGG---AT 89 Target: 47105 GA--GTTT--TTGAATCAAATAT-TTTTTGAAGGGAAAGTAAAAACTGTGGTACATTGAA 47159 || |||| ||*|*||**||*| ||||*|||***|*||*||||| ||| | Query: 90 GATTGTTTCATTCAGTCTTATCTCTTTTAGAAAACATAGGAAAAA---------ATT-A- 138 Target: 47160 GTTCACATGACTAATCATTGAGAAATAAAAACAGACTTAGCAATTATTGGTAAAAAGCAG 47219 || |||| ||||||| || |*|||||*||||*|*|| Query: 139 -TT--------TAAT--------AATAAAA------TT-----TAATTGGCAAAATGAAG 170 Target: 47220 --ATG--TTAAAA-----TATAC--ATTTTTGTTCAGGGTTAAAGGA-T---TGTTCTGA 47264 ||| |||*|| |*|*| |||*|| |||||*|| |||| | ||||||*| Query: 171 GTATGGCTTATAAGAGTGTTTTCCTATTGTT-TTCAGTGT---AGGACTCACTGTTCTAA 226 Target: 47265 ATTA----GATA---A--GATAAAGCTAAAAGTTTAAACAAGTTATAA---AAAGTTTCT 47312 ||*| ||*| | |||***| ||||| |***|*|*||||||*| |*|*|**|| Query: 227 ATAACTGGGACACCCAAGGATTCTG-TAAAA-TGCCATCCAGTTATCATTTATATTCCCT 284 Target: 47313 A--T-AAAATTCATCTTGCCA-AAGAA---ATTTTGTCCATGAACATTAAATTACGAAAG 47365 | | ||||||||| | || |*|*| |||||*|*| |*||| |||||| |*|*| Query: 285 AACTCAAAATTCAT-T---CACATGTATTCATTTTTTTC-TAAAC---AAATTA-GCATG 335 Target: 47366 GTATTATATGTTTTTTTGGT--AAATTAAGCATTTAAATAATAGCACAACAAGGTA---- 47419 ||*| *||*|||| |||||**|| ||||*|||*|**|||| Query: 336 ----TAGA----ATTCTGGTTAAAATTTGGC---------ATAGAACACCCGGGTATTTT 378 Target: 47420 CTCTTAAGGCAC----TAATCTGCTCTTTAGCAAAATTTGTAAA--GTG--TTATAAACG 47471 *||*|||*|||| ||| ||| ||*|| ||**|*|||**|| ||| |||**||*| Query: 379 TTCATAATGCACCCAATAA-CTG-TCATT--CACTAATTGAGAATGGTGATTTAACAAAG 434 Target: 47472 GGTTTTACTTTTGTAAATTTTTTGAAACAATTGTGGCAAAA------TAAATAACATGGT 47525 | | |**|||| *||*||||||*|*||***||||| |***|||| |||| Query: 435 G-----A---TAATAAA-GTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC-TGGT 484 Target: 47526 AATCTG-GAAT-TCTATTTCATAACATCAAGTGT-TTTAA-------ACCTCTAACATTT 47575 *|*|| |**| |*|*|*| *| *| |||| |*||| |*****||*|||| Query: 485 -GTGTGTGTGTGTGTGTGT-GT---GT---GTGTGTGTAAGAGGGAGAGAGAGAAAATTT 536 Target: 47576 C-TTC---CCA-AAATCAAAC----TTCAGTTTCAAAATTGT--CTTTCCT---CGTGC- 47620 | *|| ||| |||||**|| ||| *|||| ||*| ||||||| |*||| Query: 537 CACTCCCTCCATAAATCTCACAGTATTC-TTTTC----TTTTTCCTTTCCTTTCCTTGCT 591 Target: 47621 CTGACTTT-TGAATGCTACAGAGGGC---CCCTGGAGTATCC-------AAAAGAGAGGT 47669 || *|||| | || |**|**|| ||*|**| |*||| ||||||*|**| Query: 592 CT-TCTTTCT-----CT-CCTATTGCTTTCCTTTCA-TTTCCTTCTCATAAAAGAAAAAT 643 Target: 47670 AAACTGGATTATTTGACATATTTAGTTACATGGGATTGCCAATCTTCTTTAGGTTATAT- 47728 ||| |*|||***|*|||***|**||*| |||*|*|||*||| |||| |||| Query: 644 -AAC---AATATAGAAAATAACAAAATATA---GATGGTCAACCTT-TTTA----ATATT 691 Target: 47729 -AGGTTA--TATTTTG--AT-----AAA-T-ATTCTATAGGTTATATTTTGATAAATGAT 47776 |||||| ||***|| || ||| | *||||*||| |*||**||||**|| || Query: 692 AAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTCTAG---AGATGCTGATGTAT-AT 747 Target: 47777 ACTAATATATGTTCCAAAATTGTATGAGATTTCTAATGTCTGAGTATATGCTATCAAAAT 47836 |||*|*||||*|| |*|*|||| |||*||| ***|||||||| || || Query: 748 ACTTACATATTTT---ACAGTGTA------TTCAAAT-AAAGAGTATAT--TA-CA---- 790 Target: 47837 TAAG--GTTT--TTATGT---TAAGTTATTGT-A--AAC----CACAGAGA-TT---ATC 47878 |||| *|*| ||*||| *||*|| |||| | ||| *||*| || || |*| Query: 791 TAAGACATATCCTTTTGTAACCAACTT-TTGTCATTAACAATTTACTG-GACTTGTCAAC 848 Target: 47879 AAACTTCTTTGTCAACTGTGTTTCTGACTATAA---CTACCCTGGACATTTTGTTATTCA 47935 |||| || ||*|*|||*|| |*|||||| |||| |**|||||||*||| Query: 849 AAAC--CT-----AAATCTGTATC-GTCTATAATGGCTAC---GTTCATTTTGGTAT--- 894 Target: 47936 AAGACAATTGTCTTGTTTAGATCCTTTTCAAGAGATAGTTTATAAGA--AGCTACAGAAC 47993 || | ||||**|| |*||*|||| *| *||**|||| |*|| **|| ||*| Query: 895 --GA-A----TCTTAATT--ACCCCTTTC-TG-CATTATTTA-ATGATTTTCT-CATA-- 939 Target: 47994 TGTGACAGGTGCTCTCAAATGCAGTTTTCCAA---ATAACTTTGGAGATCATGACAT--T 48048 ||| || ||||*|||||*| *|||*|| *|*||||| | |||*|||| | Query: 940 TGT--CA----CTCTTAAATGTA--CTTCTAATTTTTCACTTT--A---CATCACATAAT 986 Target: 48049 GAA---AT--AAAGTA 48059 ||| || ||| || Query: 987 GAATGGATCCAAA-TA 1001 target_name: chr5 query_name: chr1 optimal_alignment_score: 230 suboptimal_alignment_score: 199 strand: + target_begin: 8806 target_end: 9723 query_begin: 11 query_end: 974 Target: 8806 AATGGCCAGGGCACTGAGGAG-CTGTGGAAGAACTGGGGAAATCACCGAAACCCAGTAC- 8863 |||*||||*|*|| | ||*|| *|*|*||***||| *|*||*| |*| |**|||*||| Query: 11 AATCGCCACGACA-T-AGTAGTATTTAGAGTTACT--AGTAAGC-CTG-ATGCCACTACA 64 Target: 8864 CATTTCAGTGAGGCCATTCTC--CA--AAAACTCTCTC---CA-TCTTATTTCTT---G- 8911 ||*||| | | ||**||||| *| |**|*|*|*|| || ||||||*|||| | Query: 65 CAATTC--T-A-GCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 Target: 8912 ------GGGAAAGAGTTCTTCTACT--TACAATATGAT---CAACCTGA--TTAAG---A 8955 *|||||*|*||*|| ||*| ||*|||*|*|| |||**||| *||*| * Query: 121 AAACATAGGAAAAAATTATT-TAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTT 179 Target: 8956 AT-ATATTGGTTT-CTATAACTGTGATGCAGATTATAACTATACAAATGCCAATTACCAG 9013 || |*|*||*||| |||| ||| *|*|||**||**||| | |*|| || |*|* Query: 180 ATAAGAGTGTTTTCCTAT---TGT-TTTCAGTGTAGGACT---C-ACTG----TT-CTAA 226 Target: 9014 A-AGCTAAGCCACCC--TGATTC--CAAAAT---AT--AGTCTCACATTTCATGGTTTCC 9063 | |*||**|*||||| *||||| *||||| || ||| |**||||| || *|||| Query: 227 ATAACTGGGACACCCAAGGATTCTGTAAAATGCCATCCAGT-TATCATTT-AT--ATTCC 282 Target: 9064 TGGTA--TCAGAAATCCCTATGAGCCTG-A--GATTTTTTCCCTTAA-------AGCA-- 9109 *|| ||| ||||*|*| |*| |*|| | *|||||||*| ||| |||| Query: 283 --CTAACTCA-AAATTCAT-TCA-CATGTATTCATTTTTTTC--TAAACAAATTAGCATG 335 Target: 9110 ---AATACTG---AAGAT-----A-AGAA-ACC----AATTAATTTCATTGTTGC----- 9147 |||*||| ||*|| | |||| ||| *||| *||||| |**||| Query: 336 TAGAATTCTGGTTAAAATTTGGCATAGAACACCCGGGTATT-TTTTCA-TAATGCACCCA 393 Target: 9148 -TATCTTGT-AT---CCAATGGCATAA----AATCTATACTAACTTGATTAGAAA-TTCT 9197 ||*| ||| || |*|||*| |*|| *||*|| ||*|| *|||*|*||| ||*| Query: 394 ATAAC-TGTCATTCACTAATTG-AGAATGGTGATTTA-ACAAA--GGATAATAAAGTTAT 448 Target: 9198 G---CCAATG------AACAACT-T---TA--T--TGT-TTTGAGTGATG---------- 9229 | |||||| ||||*|| | || | ||| |*||*||| || Query: 449 GAAACCAATGCCACAAAACATCTGTCTCTAACTGGTGTGTGTGTGTG-TGTGTGTGTGTG 507 Target: 9230 -------AAGCCCCATTTGAGA-ATATAGGCTCAATGGCCTTGC-----TCT-----TA- 9270 |||****| |||| |*|*|***|||*| ||*|*| ||| || Query: 508 TGTGTGTAAGAGGGA---GAGAGAGAAAATTTCACT--CCCTCCATAAATCTCACAGTAT 562 Target: 9271 ACTGTTCTCTATGCAGTCACTTTCTTCTGCACTAAAGTGCCAATACAGATACTG-AATAC 9329 *||*||||*|*|*|**|| |||||*| |||*|| **|**|**|*| ||*|| **|*| Query: 563 TCTTTTCTTTTTCCTTTC-CTTTCCT-TGCTCT--TCTTTCTCTCC---TATTGCTTTCC 615 Target: 9330 ATTGATTTAAAT-ACATAGATATATAAATA--GATAT-TTAAATATGC--AATATATATG 9383 *||*||||***| *|||| |*|*|*||||| *|||| **||||| *| ||||||*||| Query: 616 TTTCATTTCCTTCTCATA-AAAGAAAAATAACAATATAGAAAATA-ACAAAATATAGATG 673 Target: 9384 G--ATAC---TTTATATATT--GATT---TAAA----CATTTTCC--------TCTCATA 9421 | | || |||| ||||| |*|| |||| ||||*||| |||| || Query: 674 GTCA-ACCTTTTTA-ATATTAAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTC-TA 730 Target: 9422 GA-----TGA--AAAATCACTCTAACATGTATTGATGGCTTCACA-AGAAATCATTTACA 9473 || ||| *|*|| ||| | ||| |||| || ||| *|*|*|||**||*| Query: 731 GAGATGCTGATGTATAT-ACT-T-ACA--TATT------TT-ACAGTGTATTCAAATAAA 778 Target: 9474 GAAAATAATTGCATATGATACAGT--GTTTGTGCCAAAATGTATTCATGGCTTTAAAAAC 9531 ||**|| |||*||||*||*|*| | *|||||**|*||*| CPU time: 293.367574 seconds || ||*|*||||*|| Query: 779 GAGTAT-ATTACATAAGACATA-TCCTTTTGTAACCAACT---TT--TGTCATTAACAA- 830 Target: 9532 TTCAGTGGAAATGTCTATTCAGATCCCTAGCCCATTGTTAAATTGGTTTCTGTTTTCTTG 9591 ||*|*||||**||||*| || |*|| |||||**||*|| | ||| Query: 831 TTTACTGGACTTGTCAA--CA-AACC------------TAAATCTGTATC-G---TCT-- 869 Target: 9592 CTAAGTTTGAGCTGC-TTATAGATGATGGATATTGACCCCTTATAGATGTTGGATATTGA 9650 *||| || |||*| || *||**||| || ||| ||*|| | ||| | Query: 870 ATAA---TG-GCTACGTT---CATTTTGG-TA-TGA----------ATCTT--A-ATT-A 906 Target: 9651 CCCC-TTGTGGATGTATGGCCGGTGCTTTTCCCAGTATTTAGGTCATCTCTGCA---CAC 9706 |||| ||*||*|| ||| ****||*|||||*|| ||| |||| ||||**| *|| Query: 907 CCCCTTTCTGCAT-TAT--TTAATGATTTTCTCA-TAT----GTCA-CTCTTAAATGTAC 957 Target: 9707 TGTTGATTGTTTC-CTTT 9723 |**|*||| |||| |||| Query: 958 TTCTAATT-TTTCACTTT 974 make[1]: Leaving directory '/build/reproducible-path/libssw-1.2.5' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/libssw-1.2.5' sed 's/@DEB_HOST_MULTIARCH@/i386-linux-gnu/g' debian/libssw1.install.in > debian/libssw1.install sed 's/@DEB_HOST_MULTIARCH@/i386-linux-gnu/g' debian/libssw-dev.install.in > debian/libssw-dev.install sed -e 's/@DEB_HOST_MULTIARCH@/i386-linux-gnu/g' \ -e 's/@DEB_JAVA_PKG_VERSION@/1.2.5/g' debian/libssw-dev.links.in > debian/libssw-dev.links sed 's/@DEB_HOST_MULTIARCH@/i386-linux-gnu/g' debian/libssw-java.install.in > debian/libssw-java.install sed -e 's/@DEB_HOST_MULTIARCH@/i386-linux-gnu/g' \ -e 's/@DEB_JAVA_PKG_VERSION@/1.2.5/g' debian/libssw-java.links.in > debian/libssw-java.links mv src/ssw.jar src/ssw-1.2.5.jar dh_auto_install make[1]: Leaving directory '/build/reproducible-path/libssw-1.2.5' dh_install jh_installjavadoc dh_installdocs dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/libssw-1.2.5' LD_LIBRARY_PATH=`pwd`/src help2man --version-string=' ' --help-option=' ' \ -I debian/extra-man-info.txt \ -N -n 'fast Smith-Waterman aligner' \ --no-discard-stderr src/ssw-align \ | fgrep -v ERROR > debian/ssw-align.1 dh_installman make[1]: Leaving directory '/build/reproducible-path/libssw-1.2.5' dh_perl dh_link jh_installlibs jh_classpath jh_manifest jh_exec jh_depends mh_installpoms mh_linkjars --skip-clean-poms dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libssw1/DEBIAN/symbols doesn't match completely debian/libssw1.symbols --- debian/libssw1.symbols (libssw1_1.2.5-1_i386) +++ dpkg-gensymbolsOCmzsZ 2025-12-24 22:57:54.194536493 +1400 @@ -21,7 +21,8 @@ _ZNK20StripedSmithWaterman7Aligner13TranslateBaseEPKcRKiPa@Base 1.1 _ZNK20StripedSmithWaterman7Aligner5AlignEPKcRKNS_6FilterEPNS_9AlignmentEi@Base 1.2.4 _ZNK20StripedSmithWaterman7Aligner5AlignEPKcS2_RKiRKNS_6FilterEPNS_9AlignmentEi@Base 1.2.4 - (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 1.1 + _ZNSt6vectorIjSaIjEE17_M_realloc_appendIJRKjEEEvDpOT_@Base 1.2.5-1 +#MISSING: 1.2.5-1# (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 1.1 align_destroy@Base 1.1 encoded_ops@Base 1.2.4 init_destroy@Base 1.1 dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libssw1' in '../libssw1_1.2.5-1_i386.deb'. dpkg-deb: building package 'libssw-java-dbgsym' in '../libssw-java-dbgsym_1.2.5-1_i386.deb'. dpkg-deb: building package 'ssw-align' in '../ssw-align_1.2.5-1_i386.deb'. dpkg-deb: building package 'ssw-align-dbgsym' in '../ssw-align-dbgsym_1.2.5-1_i386.deb'. dpkg-deb: building package 'libssw1-dbgsym' in '../libssw1-dbgsym_1.2.5-1_i386.deb'. dpkg-deb: building package 'libssw-dev' in '../libssw-dev_1.2.5-1_i386.deb'. dpkg-deb: building package 'libssw-java' in '../libssw-java_1.2.5-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../libssw_1.2.5-1_i386.buildinfo dpkg-genchanges --build=binary -O../libssw_1.2.5-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/51848/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/51848/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/51848 and its subdirectories I: Current time: Wed Dec 24 22:58:00 +14 2025 I: pbuilder-time-stamp: 1766566680 + false + set +x Wed Dec 24 08:58:00 UTC 2025 I: Signing ./b2/libssw_1.2.5-1_i386.buildinfo as libssw_1.2.5-1_i386.buildinfo.asc Wed Dec 24 08:58:00 UTC 2025 I: Signed ./b2/libssw_1.2.5-1_i386.buildinfo as ./b2/libssw_1.2.5-1_i386.buildinfo.asc Wed Dec 24 08:58:00 UTC 2025 - build #2 for libssw/experimental/i386 on ionos16-i386 done. Starting cleanup. All cleanup done. Wed Dec 24 08:58:00 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-NoEWf8hS, removing. /srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx: total 120 drwxr-xr-x 2 jenkins jenkins 4096 Nov 21 02:28 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 21 02:35 b2 -rw-r--r-- 1 jenkins jenkins 2393 Aug 14 2023 libssw_1.2.5-1.dsc -rw------- 1 jenkins jenkins 102552 Nov 21 02:28 rbuildlog.r1llZqR /srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx/b1: total 12568 -rw-r--r-- 1 jenkins jenkins 98760 Nov 21 02:28 build.log -rw-r--r-- 1 jenkins jenkins 26852 Nov 21 02:28 libssw-dev_1.2.5-1_i386.deb -rw-r--r-- 1 jenkins jenkins 38664 Nov 21 02:28 libssw-java-dbgsym_1.2.5-1_i386.deb -rw-r--r-- 1 jenkins jenkins 20448 Nov 21 02:28 libssw-java_1.2.5-1_i386.deb -rw-r--r-- 1 jenkins jenkins 107248 Nov 21 02:28 libssw1-dbgsym_1.2.5-1_i386.deb -rw-r--r-- 1 jenkins jenkins 26148 Nov 21 02:28 libssw1_1.2.5-1_i386.deb -rw-r--r-- 1 jenkins jenkins 15348 Nov 21 02:28 libssw_1.2.5-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2393 Nov 21 02:28 libssw_1.2.5-1.dsc -rw-r--r-- 1 jenkins jenkins 9829 Nov 21 02:28 libssw_1.2.5-1_i386.buildinfo -rw-r--r-- 1 jenkins jenkins 10711 Nov 21 02:28 libssw_1.2.5-1_i386.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 3142 Nov 21 02:28 libssw_1.2.5-1_i386.changes -rw-r--r-- 1 jenkins jenkins 1684 Nov 21 02:28 libssw_1.2.5-1_source.changes -rw-r--r-- 1 jenkins jenkins 12384395 Nov 21 02:28 libssw_1.2.5.orig.tar.gz -rw-r--r-- 1 jenkins jenkins 47044 Nov 21 02:28 ssw-align-dbgsym_1.2.5-1_i386.deb -rw-r--r-- 1 jenkins jenkins 24376 Nov 21 02:28 ssw-align_1.2.5-1_i386.deb /srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx/b2: total 12568 -rw-r--r-- 1 jenkins jenkins 100685 Nov 21 02:35 build.log -rw-r--r-- 1 jenkins jenkins 26852 Nov 21 02:35 libssw-dev_1.2.5-1_i386.deb -rw-r--r-- 1 jenkins jenkins 38664 Nov 21 02:35 libssw-java-dbgsym_1.2.5-1_i386.deb -rw-r--r-- 1 jenkins jenkins 20448 Nov 21 02:35 libssw-java_1.2.5-1_i386.deb -rw-r--r-- 1 jenkins jenkins 107248 Nov 21 02:35 libssw1-dbgsym_1.2.5-1_i386.deb -rw-r--r-- 1 jenkins jenkins 26148 Nov 21 02:35 libssw1_1.2.5-1_i386.deb -rw-r--r-- 1 jenkins jenkins 15348 Nov 21 02:35 libssw_1.2.5-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2393 Nov 21 02:35 libssw_1.2.5-1.dsc -rw-r--r-- 1 jenkins jenkins 9829 Nov 21 02:35 libssw_1.2.5-1_i386.buildinfo -rw-r--r-- 1 jenkins jenkins 10711 Nov 21 02:35 libssw_1.2.5-1_i386.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 3142 Nov 21 02:35 libssw_1.2.5-1_i386.changes -rw-r--r-- 1 jenkins jenkins 1684 Nov 21 02:35 libssw_1.2.5-1_source.changes -rw-r--r-- 1 jenkins jenkins 12384395 Nov 21 02:35 libssw_1.2.5.orig.tar.gz -rw-r--r-- 1 jenkins jenkins 47044 Nov 21 02:35 ssw-align-dbgsym_1.2.5-1_i386.deb -rw-r--r-- 1 jenkins jenkins 24376 Nov 21 02:35 ssw-align_1.2.5-1_i386.deb Thu Nov 21 02:35:01 UTC 2024 I: Deleting $TMPDIR on ionos16-i386.debian.net. Thu Nov 21 02:35:02 UTC 2024 I: libssw_1.2.5-1_i386.changes: Format: 1.8 Date: Sat, 15 Jul 2023 12:56:57 +0200 Source: libssw Binary: libssw-dev libssw-java libssw-java-dbgsym libssw1 libssw1-dbgsym ssw-align ssw-align-dbgsym Architecture: i386 Version: 1.2.5-1 Distribution: experimental Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libssw-dev - Development headers and static libraries for libssw libssw-java - Java bindings for libssw libssw1 - fast SIMD parallelized implementation of the Smith-Waterman algor ssw-align - Smith-Waterman aligner based on libssw Closes: 1037742 Changes: libssw (1.2.5-1) experimental; urgency=medium . [ Andreas Tille ] * Team upload. * New upstream version. * Remove trailing whitespace in debian/copyright (routine-update) * Update symbols for gcc-13 Closes: #1037742 . [ Michael R. Crusoe ] * Remove extra copy of SIMDe in debian/include/simde Checksums-Sha1: edd5706e1fd74a5a9392f4700cf1ee3ab413899d 26852 libssw-dev_1.2.5-1_i386.deb 70a8c6b61c1b6178c385e997c96dffdd25c4ede3 38664 libssw-java-dbgsym_1.2.5-1_i386.deb 35249b3915c6b23c7b149f5436b2a93ef1e4affe 20448 libssw-java_1.2.5-1_i386.deb f76e2bb7ce82ced57aeceb094a28441a471cbaf8 107248 libssw1-dbgsym_1.2.5-1_i386.deb 4a31b9bf858b73d1a76fc7f5f259ba8cc2f4a790 26148 libssw1_1.2.5-1_i386.deb 46fa2aad39d6825838421abf0b6f88eaadf5897e 9829 libssw_1.2.5-1_i386.buildinfo a46ad7818c25687648c7a4f7b0449dd63bf2e615 47044 ssw-align-dbgsym_1.2.5-1_i386.deb d5c531d907a4c20044deba5f9e9c445bd003a1f4 24376 ssw-align_1.2.5-1_i386.deb Checksums-Sha256: 06d82596d5181cd27f83f2d6940102d39cfe2d11931524a58f57defd4472bb07 26852 libssw-dev_1.2.5-1_i386.deb 4a231432b554ae327d6e639a91859f36ed4b91af5477dac8bd54a33b01514812 38664 libssw-java-dbgsym_1.2.5-1_i386.deb 850de2d6af7a561da531636c70eebf573a1548b608788f73be61974b19badbd2 20448 libssw-java_1.2.5-1_i386.deb 20f03f8e0ab83f90dff21a0ea46526de2ef85e0a7d75cc7d7351e5d88c0d8ea6 107248 libssw1-dbgsym_1.2.5-1_i386.deb 418504e6c30c4dabccf202244f3ed42a85c6372755c9d4c88b7b85bc5db11bcf 26148 libssw1_1.2.5-1_i386.deb aaa49a2698f8f2a339153efe9715800854721fb03ea32b9dff774be4f7dea83f 9829 libssw_1.2.5-1_i386.buildinfo f109ea315621bb8966ac332e56f23c2887891b8d9ac58f75fcf09b5b77b32594 47044 ssw-align-dbgsym_1.2.5-1_i386.deb 470e861b15d85bb2371b8d854f432724f95fd0d3195ef9087069f2b2447e0277 24376 ssw-align_1.2.5-1_i386.deb Files: 5339e011c5a20bae9e55ee02a3e16f56 26852 libdevel optional libssw-dev_1.2.5-1_i386.deb 304d08d9a7e00972470e0fb7af8f46cf 38664 debug optional libssw-java-dbgsym_1.2.5-1_i386.deb 37afd270d202697d6c55c77268898d27 20448 java optional libssw-java_1.2.5-1_i386.deb ed757abd569c7f3e740311edc3a09acb 107248 debug optional libssw1-dbgsym_1.2.5-1_i386.deb d052f3f3303c23082bf9e2f264694362 26148 libs optional libssw1_1.2.5-1_i386.deb f5adb4b90365ffae860554ac62fb7f92 9829 science optional libssw_1.2.5-1_i386.buildinfo f1fc833f326a4e2c8086447ed8f13253 47044 debug optional ssw-align-dbgsym_1.2.5-1_i386.deb 7afe5f0a9d8df7fb453702f1431d6111 24376 science optional ssw-align_1.2.5-1_i386.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/i386/libssw_1.2.5-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/i386/libssw_1.2.5-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/experimental/i386/libssw_1.2.5-1.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/experimental/i386/libssw_1.2.5-1.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/experimental/i386/libssw_1.2.5-1_i386.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/i386/libssw_1.2.5-1.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-11-21 02:28:18.210042264 +0000 +++ b2/build.log 2024-11-21 02:35:01.543831797 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Nov 20 14:20:28 -12 2024 -I: pbuilder-time-stamp: 1732155628 +I: Current time: Wed Dec 24 22:51:21 +14 2025 +I: pbuilder-time-stamp: 1766566281 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration @@ -33,54 +33,86 @@ dpkg-source: info: applying malloc I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/7621/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/51848/tmp/hooks/D01_modify_environment starting +debug: Running on ionos16-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 24 08:51 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/51848/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/51848/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' - DISTRIBUTION='experimental' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 ' + DIRSTACK=() + DISTRIBUTION=experimental + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='649df34c73d24f31800ca0b6492b0a38' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='7621' - PS1='# ' - PS2='> ' + INVOCATION_ID=00d3d6a9e5fe4991b6b32919266e9c34 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=51848 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx/pbuilderrc_KZBg --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx/b1 --logfile b1/build.log libssw_1.2.5-1.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx/pbuilderrc_TrV7 --distribution experimental --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx/b2 --logfile b2/build.log libssw_1.2.5-1.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos12-i386 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/7621/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/51848/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -258,7 +290,7 @@ Get: 128 http://deb.debian.org/debian unstable/main i386 libsimde-dev all 0.8.2-1 [465 kB] Get: 129 http://deb.debian.org/debian unstable/main i386 maven-repo-helper all 1.11 [142 kB] Get: 130 http://deb.debian.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] -Fetched 168 MB in 3s (49.1 MB/s) +Fetched 168 MB in 4s (44.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpipeline1:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19952 files and directories currently installed.) @@ -700,8 +732,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Nov 21 02:21:06 UTC 2024. -Universal Time is now: Thu Nov 21 02:21:06 UTC 2024. +Local time is now: Wed Dec 24 08:52:10 UTC 2025. +Universal Time is now: Wed Dec 24 08:52:10 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -996,7 +1028,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libssw-1.2.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libssw_1.2.5-1_source.changes +I: user script /srv/workspace/pbuilder/51848/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for experimental +I: user script /srv/workspace/pbuilder/51848/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libssw-1.2.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libssw_1.2.5-1_source.changes dpkg-buildpackage: info: source package libssw dpkg-buildpackage: info: source version 1.2.5-1 dpkg-buildpackage: info: source distribution experimental @@ -1009,13 +1045,13 @@ make[1]: Entering directory '/build/reproducible-path/libssw-1.2.5' rm -f debian/libssw*install debian/libssw*links debian/ssw-align.1 dh_auto_clean --sourcedirectory src - cd src && make -j11 clean + cd src && make -j21 clean make[2]: Entering directory '/build/reproducible-path/libssw-1.2.5/src' rm -f ssw.o ssw_cpp.o ssw-align libssw.so.1 example_c example_cpp libsswjni.so *.jar ssw/Aligner.class ssw/Alignment.class *~ libssw.a make[2]: Leaving directory '/build/reproducible-path/libssw-1.2.5/src' make[1]: Leaving directory '/build/reproducible-path/libssw-1.2.5' jh_clean -Duplicate specification "u=s" for option "u" +Duplicate specification "unlink|u" for option "u" dh_clean debian/rules binary dh binary --with javahelper --with jh_maven_repo_helper @@ -1025,7 +1061,7 @@ debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/libssw-1.2.5' dh_auto_build --sourcedirectory src -- default java - cd src && make -j11 "INSTALL=install --strip-program=true" default java + cd src && make -j21 "INSTALL=install --strip-program=true" default java make[2]: Entering directory '/build/reproducible-path/libssw-1.2.5/src' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libssw-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fPIC -shared -rdynamic -Wl,-soname,libssw.so.1 -o libssw.so.1 ssw.c ssw.h ssw_cpp.h ssw_cpp.cpp -Wl,-z,relro -Wl,-z,now cc -c -o ssw.o ssw.c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libssw-1.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -pipe -O2 @@ -1448,7 +1484,7 @@ Query: 731 GAGATGCTGATGTATAT-ACT-T-ACA--TATT------TT-ACAGTGTATTCAAATAAA 778 Target: 9474 GAAAATAATTGCATATGATACAGT--GTTTGTGCCAAAATGTATTCATGGCTTTAAAAAC 9531 - ||**|| |||*||||*||*|*| | *|||||**|*||*| CPU time: 386.145492 seconds + ||**|| |||*||||*||*|*| | *|||||**|*||*| CPU time: 293.367574 seconds || ||*|*||||*|| Query: 779 GAGTAT-ATTACATAAGACATA-TCCTTTTGTAACCAACT---TT--TGTCATTAACAA- 830 @@ -1515,7 +1551,7 @@ dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libssw1/DEBIAN/symbols doesn't match completely debian/libssw1.symbols --- debian/libssw1.symbols (libssw1_1.2.5-1_i386) -+++ dpkg-gensymbols52PZiW 2024-11-20 14:28:12.170105510 -1200 ++++ dpkg-gensymbolsOCmzsZ 2025-12-24 22:57:54.194536493 +1400 @@ -21,7 +21,8 @@ _ZNK20StripedSmithWaterman7Aligner13TranslateBaseEPKcRKiPa@Base 1.1 _ZNK20StripedSmithWaterman7Aligner5AlignEPKcRKNS_6FilterEPNS_9AlignmentEi@Base 1.2.4 @@ -1532,12 +1568,12 @@ dh_md5sums dh_builddeb dpkg-deb: building package 'libssw1' in '../libssw1_1.2.5-1_i386.deb'. -dpkg-deb: building package 'libssw1-dbgsym' in '../libssw1-dbgsym_1.2.5-1_i386.deb'. -dpkg-deb: building package 'libssw-dev' in '../libssw-dev_1.2.5-1_i386.deb'. -dpkg-deb: building package 'libssw-java' in '../libssw-java_1.2.5-1_i386.deb'. dpkg-deb: building package 'libssw-java-dbgsym' in '../libssw-java-dbgsym_1.2.5-1_i386.deb'. dpkg-deb: building package 'ssw-align' in '../ssw-align_1.2.5-1_i386.deb'. dpkg-deb: building package 'ssw-align-dbgsym' in '../ssw-align-dbgsym_1.2.5-1_i386.deb'. +dpkg-deb: building package 'libssw1-dbgsym' in '../libssw1-dbgsym_1.2.5-1_i386.deb'. +dpkg-deb: building package 'libssw-dev' in '../libssw-dev_1.2.5-1_i386.deb'. +dpkg-deb: building package 'libssw-java' in '../libssw-java_1.2.5-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../libssw_1.2.5-1_i386.buildinfo dpkg-genchanges --build=binary -O../libssw_1.2.5-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1545,12 +1581,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/51848/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/51848/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/7621 and its subdirectories -I: Current time: Wed Nov 20 14:28:17 -12 2024 -I: pbuilder-time-stamp: 1732156097 +I: removing directory /srv/workspace/pbuilder/51848 and its subdirectories +I: Current time: Wed Dec 24 22:58:00 +14 2025 +I: pbuilder-time-stamp: 1766566680 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/i386/libssw_1.2.5-1.diff: 67.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/i386/libssw_1.2.5-1.diff.gz b2/build.log: 78.4% -- replaced with stdout Compressing the 1st log... b1/build.log: 78.7% -- replaced with stdout Thu Nov 21 02:35:03 UTC 2024 I: diffoscope 283 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_libssw_experimental_i386_1732156503 + touch /var/log/reproducible-builds/diffoscope_stamp_libssw_experimental_i386_1732156503 + RESULT=0 + systemd-run '--description=diffoscope on libssw/1.2.5-1 in experimental/i386' --slice=rb-build-diffoscope.slice -u rb-diffoscope-i386_12-29739 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx --run-session -c jenkins-reproducible-unstable-diffoscope-a7a0cca8-02b1-4ca8-adef-95a5d907e90f -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx/dbd-tmp-F9TyEyq ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx/libssw_1.2.5-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx/libssw_1.2.5-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx/libssw_1.2.5-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx/b1/libssw_1.2.5-1_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx/b2/libssw_1.2.5-1_i386.changes' + false + set +x Running as unit: rb-diffoscope-i386_12-29739.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx/libssw_1.2.5-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx/libssw_1.2.5-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx/libssw_1.2.5-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx/b1/libssw_1.2.5-1_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.u9zMYNwx/b2/libssw_1.2.5-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.428s) 0.428s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.025s) 0.025s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 784ms CPU time consumed: 782ms _ _ _ | (_) |__ ___ _____ __ | | | '_ \/ __/ __\ \ /\ / / | | | |_) \__ \__ \\ V V / |_|_|_.__/|___/___/ \_/\_/ Thu Nov 21 02:35:04 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Thu Nov 21 02:35:04 UTC 2024 I: libssw from experimental built successfully and reproducibly on i386. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-21 02:35:05] INFO: Starting at 2024-11-21 02:35:05.230678 [2024-11-21 02:35:05] INFO: Generating the pages of 1 package(s) [2024-11-21 02:35:05] CRITICAL: https://tests.reproducible-builds.org/debian/experimental/i386/libssw didn't produce a buildlog, even though it has been built. [2024-11-21 02:35:05] INFO: Finished at 2024-11-21 02:35:05.784726, took: 0:00:00.554055 Thu Nov 21 02:35:05 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/experimental/i386/libssw.html Thu Nov 21 02:35:05 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Nov 21 02:35:05 UTC 2024 I: Submitting 12K b1/libssw_1.2.5-1_i386.buildinfo.asc https://buildinfo.debian.net/46fa2aad39d6825838421abf0b6f88eaadf5897e/libssw_1.2.5-1_i386 Thu Nov 21 02:35:06 UTC 2024 I: Submitting 12K b2/libssw_1.2.5-1_i386.buildinfo.asc https://buildinfo.debian.net/3b7cc817279f9ce7484c97e9809a5d2139b630ac/libssw_1.2.5-1_i386 Thu Nov 21 02:35:07 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Nov 21 02:35:07 UTC 2024 I: Done submitting .buildinfo files. Thu Nov 21 02:35:07 UTC 2024 I: Removing signed libssw_1.2.5-1_i386.buildinfo.asc files: removed './b1/libssw_1.2.5-1_i386.buildinfo.asc' removed './b2/libssw_1.2.5-1_i386.buildinfo.asc' 1732156507 i386 experimental libssw Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/i386/libssw_1.2.5-1.rbuild.log: 76.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/i386/libssw_1.2.5-1.rbuild.log.gz [2024-11-21 02:35:07] INFO: Starting at 2024-11-21 02:35:07.747856 [2024-11-21 02:35:07] INFO: Generating the pages of 1 package(s) [2024-11-21 02:35:08] INFO: Finished at 2024-11-21 02:35:08.256826, took: 0:00:00.508977 All cleanup done. Thu Nov 21 02:35:08 UTC 2024 - total duration: 0h 14m 51s. Thu Nov 21 02:35:08 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-veL1mKIu, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 14min 55.101s CPU time consumed: 7.674s