Running as unit: rb-build-i386_12-40759.service ==================================================================================== Fri Feb 21 16:26:46 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_i386_12) on jenkins, called using "ionos12-i386 ionos16-i386" as arguments. Fri Feb 21 16:26:46 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-KDE8ACEJ" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Feb 21 16:26:46 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos12-i386.debian.net is marked as down. Fri Feb 21 16:26:46 UTC 2025 - checking via ssh if ionos12-i386.debian.net is up. removed '/tmp/read-only-fs-test-MtZb7A' Fri Feb 21 16:26:46 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos16-i386.debian.net is marked as down. Fri Feb 21 16:26:46 UTC 2025 - checking via ssh if ionos16-i386.debian.net is up. removed '/tmp/read-only-fs-test-yl8Y87' ok, let's check if gatk-fermilite is building anywhere yet… ok, gatk-fermilite is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of gatk-fermilite in trixie on i386 on jenkins now. 1st build will be done on ionos12-i386.debian.net. 2nd build will be done on ionos16-i386.debian.net. ============================================================================= Fri Feb 21 16:27:01 UTC 2025 I: starting to build gatk-fermilite/trixie/i386 on jenkins on '2025-02-21 16:26' Fri Feb 21 16:27:01 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_12/40759/console.log 1740155221 i386 trixie gatk-fermilite Fri Feb 21 16:27:01 UTC 2025 I: Downloading source for trixie/gatk-fermilite=1.2.1+dfsg-2 --2025-02-21 16:27:01-- http://deb.debian.org/debian/pool/main/g/gatk-fermilite/gatk-fermilite_1.2.1%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2209 (2.2K) [text/prs.lines.tag] Saving to: ‘gatk-fermilite_1.2.1+dfsg-2.dsc’ 0K .. 100% 389M=0s 2025-02-21 16:27:01 (389 MB/s) - ‘gatk-fermilite_1.2.1+dfsg-2.dsc’ saved [2209/2209] --2025-02-21 16:27:01-- http://deb.debian.org/debian/pool/main/g/gatk-fermilite/gatk-fermilite_1.2.1%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2209 (2.2K) [text/prs.lines.tag] Saving to: ‘gatk-fermilite_1.2.1+dfsg-2.dsc’ 0K .. 100% 389M=0s 2025-02-21 16:27:01 (389 MB/s) - ‘gatk-fermilite_1.2.1+dfsg-2.dsc’ saved [2209/2209] Fri Feb 21 16:27:01 UTC 2025 I: gatk-fermilite_1.2.1+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: gatk-fermilite Binary: libgatk-fermilite-java, libgatk-fermilite-jni Architecture: any all Version: 1.2.1+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Pierre Gruet Homepage: https://github.com/broadinstitute/gatk-fermilite-jni/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/gatk-fermilite Vcs-Git: https://salsa.debian.org/med-team/gatk-fermilite.git Build-Depends: debhelper-compat (= 13), default-jdk-headless, gradle-debian-helper, libfml-dev, maven-repo-helper, testng Package-List: libgatk-fermilite-java deb java optional arch=all libgatk-fermilite-jni deb java optional arch=any Checksums-Sha1: 23608342ed1796d5e329645e6dcd8dcadbe4a3cd 12080 gatk-fermilite_1.2.1+dfsg.orig.tar.xz f413e2076220f12bebf496a84ecefe3eda5c0046 7468 gatk-fermilite_1.2.1+dfsg-2.debian.tar.xz Checksums-Sha256: c451f5e2a09a0472ec44d6707974086e6bbf8e5c02f35b619d2fc7bf5a503ab2 12080 gatk-fermilite_1.2.1+dfsg.orig.tar.xz 42513386501f33d9b35ed029d4e8d3fae45c184590f99eae95c821eb3d20fcdb 7468 gatk-fermilite_1.2.1+dfsg-2.debian.tar.xz Files: ccac31ec944a7bb326f0dcbd5e667cf7 12080 gatk-fermilite_1.2.1+dfsg.orig.tar.xz 6991684514f8ac11f388dd0d99d40d91 7468 gatk-fermilite_1.2.1+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEM8soQxPpC9J9y0UjYAMWptwndHYFAmJMoykACgkQYAMWptwn dHYPFA/+LykQOLfcYyMW/JqKorhpUoVPd/qpiERV/lZ9xbFir3J6s9woYUHgkqJ5 TwGHxFoRDiudrH7r4LgrUNshbILWUVi0Cke6Pa4LupiPbCf5u5To6lnX/klPpJ5A Z25QqjMABK0p53SExINmxXHJ9RQG6L/jt+bHPlaJItt4tQ50ISdJa3mudtDobiU8 1yq9OSxplQJlauVOhS61vhN9jq1G3wlsd9HB55LcjyGTEWPP/Lk1XRNEtj97MMbA x6nWYALdoZ3UwYCgrnVG1hEzVTDALMgaxvSkBSngksWOjsOKd5GYaWoGd1FtMfMx 3Ee3PcmN6MKdEkNzvWw8uEjrqvG1lSATMlTtWM+6NocaO+I8WTjxHRX8Qz8Jr4XY vpo7AI27vZRBp5Xqh1qqnTsOrAvKL+9+Sc4C8D9S6tgBQtaZCF8XIszW5tShLlnS T95ou+A5iVsu3mdgjG9M57+3Ggz5gQtCi0EAGXXCavV3/nvHZQ1YDLhlllrZCwYH EOJJ880foShaBCbGXzqaDl2SwT6yC1UeAXsXB0p2+OaGcRPGwkMnelFG7leApNAA lZ38TqrPDTSZH0+ysdaB7CJXN9B16uxszbxHUcTLEfvGjqKipqfopOJOrBkNkBV0 q+Zo/KRnlzM+iEF/vW13Se7xXZnAptu6BxBJT1NApDfw9mE9WT8= =+hOg -----END PGP SIGNATURE----- Fri Feb 21 16:27:01 UTC 2025 I: Checking whether the package is not for us Fri Feb 21 16:27:01 UTC 2025 I: Starting 1st build on remote node ionos12-i386.debian.net. Fri Feb 21 16:27:01 UTC 2025 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Fri Feb 21 16:27:01 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos12-i386.debian.net is marked as down. Fri Feb 21 16:27:01 UTC 2025 - checking via ssh if ionos12-i386.debian.net is up. removed '/tmp/read-only-fs-test-0n352p' ==================================================================================== Fri Feb 21 16:27:02 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos12-i386, called using "1 gatk-fermilite trixie /srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L 1.2.1+dfsg-2" as arguments. Fri Feb 21 16:27:02 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-dQHQ6yRd" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Feb 21 16:27:02 UTC 2025 I: Downloading source for trixie/gatk-fermilite=1.2.1+dfsg-2 Reading package lists... NOTICE: 'gatk-fermilite' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/gatk-fermilite.git Please use: git clone https://salsa.debian.org/med-team/gatk-fermilite.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 21.8 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main gatk-fermilite 1.2.1+dfsg-2 (dsc) [2209 B] Get:2 http://deb.debian.org/debian trixie/main gatk-fermilite 1.2.1+dfsg-2 (tar) [12.1 kB] Get:3 http://deb.debian.org/debian trixie/main gatk-fermilite 1.2.1+dfsg-2 (diff) [7468 B] Fetched 21.8 kB in 0s (859 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'gatk-fermilite' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/gatk-fermilite.git Please use: git clone https://salsa.debian.org/med-team/gatk-fermilite.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 21.8 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main gatk-fermilite 1.2.1+dfsg-2 (dsc) [2209 B] Get:2 http://deb.debian.org/debian trixie/main gatk-fermilite 1.2.1+dfsg-2 (tar) [12.1 kB] Get:3 http://deb.debian.org/debian trixie/main gatk-fermilite 1.2.1+dfsg-2 (diff) [7468 B] Fetched 21.8 kB in 0s (859 kB/s) Download complete and in download only mode ============================================================================= Building gatk-fermilite in trixie on i386 on ionos12-i386 now. Date: Fri Feb 21 17:27:02 CET 2025 Date UTC: Fri Feb 21 16:27:02 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Feb 21 04:27:02 -12 2025 I: pbuilder-time-stamp: 1740155222 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [gatk-fermilite_1.2.1+dfsg-2.dsc] I: copying [./gatk-fermilite_1.2.1+dfsg.orig.tar.xz] I: copying [./gatk-fermilite_1.2.1+dfsg-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./gatk-fermilite_1.2.1+dfsg-2.dsc: unsupported subcommand dpkg-source: info: extracting gatk-fermilite in gatk-fermilite-1.2.1+dfsg dpkg-source: info: unpacking gatk-fermilite_1.2.1+dfsg.orig.tar.xz dpkg-source: info: unpacking gatk-fermilite_1.2.1+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying build.patch dpkg-source: info: applying use_Debian_fml.patch dpkg-source: info: applying rename_bseq1_t.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/52976/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='5fa27caf3e65493795fb16c72cc05536' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='52976' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L/pbuilderrc_S9Bb --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L/b1 --logfile b1/build.log gatk-fermilite_1.2.1+dfsg-2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos12-i386 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/52976/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), default-jdk-headless, gradle-debian-helper, libfml-dev, maven-repo-helper, testng dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19795 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on default-jdk-headless; however: Package default-jdk-headless is not installed. pbuilder-satisfydepends-dummy depends on gradle-debian-helper; however: Package gradle-debian-helper is not installed. pbuilder-satisfydepends-dummy depends on libfml-dev; however: Package libfml-dev is not installed. pbuilder-satisfydepends-dummy depends on maven-repo-helper; however: Package maven-repo-helper is not installed. pbuilder-satisfydepends-dummy depends on testng; however: Package testng is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: ant{a} ant-optional{a} antlr{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bnd{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} debhelper{a} default-jdk-headless{a} default-jre-headless{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gradle{a} gradle-debian-helper{a} groff-base{a} groovy{a} intltool-debian{a} ivy{a} java-common{a} java-wrappers{a} junit4{a} libantlr-java{a} libaopalliance-java{a} libapache-pom-java{a} libarchive-zip-perl{a} libasm-java{a} libatinject-jsr330-api-java{a} libbcel-java{a} libbcpg-java{a} libbcprov-java{a} libbsf-java{a} libbsh-java{a} libcdi-api-java{a} libcommons-cli-java{a} libcommons-codec-java{a} libcommons-collections3-java{a} libcommons-compress-java{a} libcommons-io-java{a} libcommons-lang-java{a} libcommons-lang3-java{a} libcommons-logging-java{a} libcommons-parent-java{a} libdd-plist-java{a} libdebhelper-perl{a} libdom4j-java{a} libeclipse-jdt-annotation-java{a} libel-api-java{a} libelf1t64{a} liberror-prone-java{a} libfelix-framework-java{a} libfelix-gogo-runtime-java{a} libfelix-resolver-java{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfindbugs-java{a} libfml-dev{a} libfml0{a} libgeronimo-annotation-1.3-spec-java{a} libgeronimo-interceptor-3.0-spec-java{a} libgoogle-gson-java{a} libgradle-core-java{a} libgradle-plugins-java{a} libguava-java{a} libguice-java{a} libhamcrest-java{a} libhawtjni-runtime-java{a} libhttpclient-java{a} libhttpcore-java{a} libicu72{a} libjansi-java{a} libjansi-native-java{a} libjansi1-java{a} libjarjar-java{a} libjatl-java{a} libjavaewah-java{a} libjaxen-java{a} libjcifs-java{a} libjcip-annotations-java{a} libjcommander-java{a} libjetty9-java{a} libjformatstring-java{a} libjgit-java{a} libjline2-java{a} libjna-java{a} libjna-jni{a} libjpeg62-turbo{a} libjs-jquery{a} libjsch-java{a} libjsoup-java{a} libjsp-api-java{a} libjsr305-java{a} libjunixsocket-java{a} libjunixsocket-jni{a} libjzlib-java{a} libkryo-java{a} liblcms2-2{a} liblightcouch-java{a} liblog4j2-java{a} liblogback-java{a} libmagic-mgc{a} libmagic1t64{a} libmaven-parent-java{a} libmaven-resolver-java{a} libmaven-shared-utils-java{a} libmaven3-core-java{a} libminlog-java{a} libmongodb-java{a} libnative-platform-java{a} libnative-platform-jni{a} libnekohtml-java{a} libnspr4{a} libnss3{a} libobjenesis-java{a} libosgi-annotation-java{a} libosgi-compendium-java{a} libosgi-core-java{a} libpcsclite1{a} libpipeline1{a} libplexus-cipher-java{a} libplexus-classworlds-java{a} libplexus-component-annotations-java{a} libplexus-container-default-java{a} libplexus-interpolation-java{a} libplexus-sec-dispatcher-java{a} libplexus-utils2-java{a} libpolyglot-maven-java{a} libqdox-java{a} libreflectasm-java{a} librhino-java{a} libservlet-api-java{a} libsimple-http-java{a} libsisu-inject-java{a} libsisu-plexus-java{a} libslf4j-java{a} libtool{a} libuchardet0{a} libunistring5{a} libwagon-file-java{a} libwagon-http-java{a} libwagon-provider-api-java{a} libwebsocket-api-java{a} libxbean-reflect-java{a} libxerces2-java{a} libxml-commons-external-java{a} libxml-commons-resolver1.1-java{a} libxml2{a} libxpp3-java{a} libxstream-java{a} libxz-java{a} libyaml-snake-java{a} m4{a} man-db{a} maven-repo-helper{a} openjdk-21-jdk-headless{a} openjdk-21-jre-headless{a} openssl{a} po-debconf{a} sensible-utils{a} testng{a} unzip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libasound2t64 libbindex-java libcups2t64 libfontconfig1 libfreetype6 libgpars-groovy-java libharfbuzz0b libltdl-dev libmail-sendmail-perl libreflectasm-java-doc lynx wget 0 packages upgraded, 169 newly installed, 0 to remove and 0 not upgraded. Need to get 239 MB of archives. After unpacking 514 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 openssl i386 3.4.1-1 [1432 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 ca-certificates all 20241223 [164 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.23.1-1 [245 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-7 [1199 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.4-3 [96.2 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 ca-certificates-java all 20240118 [11.6 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 java-common all 0.76 [6776 B] Get: 15 http://deb.debian.org/debian trixie/main i386 liblcms2-2 i386 2.16-2 [171 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libjpeg62-turbo i386 1:2.1.5-3+b1 [171 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 libnspr4 i386 2:4.36-1 [119 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libnss3 i386 2:3.108-1 [1505 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libpcsclite1 i386 2.3.1-1 [57.3 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 openjdk-21-jre-headless i386 21.0.6+7-1 [43.2 MB] Get: 21 http://deb.debian.org/debian trixie/main i386 default-jre-headless i386 2:1.21-76 [3192 B] Get: 22 http://deb.debian.org/debian trixie/main i386 ant all 1.10.15-1 [2163 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 ant-optional all 1.10.15-1 [456 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libantlr-java all 2.7.7+dfsg-14 [458 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 antlr all 2.7.7+dfsg-14 [8376 B] Get: 26 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-5 [301 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 automake all 1:1.17-3 [862 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 autopoint all 0.23.1-1 [770 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 unzip i386 6.0-28 [166 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 java-wrappers all 0.5 [8848 B] Get: 33 http://deb.debian.org/debian trixie/main i386 libhamcrest-java all 2.2-2 [121 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 junit4 all 4.13.2-5 [350 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 libfelix-framework-java all 4.6.1-3 [577 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 libfelix-gogo-runtime-java all 0.16.2-2 [117 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 libosgi-annotation-java all 8.1.0-1 [9436 B] Get: 38 http://deb.debian.org/debian trixie/main i386 libosgi-core-java all 8.0.0-2 [182 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 libfelix-resolver-java all 1.16.0-1 [180 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 libhawtjni-runtime-java all 1.18-1 [36.3 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libjansi-native-java all 1.8-2 [26.0 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 libjansi1-java all 1.18-3.1 [66.6 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 libjline2-java all 2.14.6-5 [151 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 libosgi-compendium-java all 7.0.0-1 [477 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 libslf4j-java all 1.7.32-1 [144 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 libxz-java all 1.9-1 [143 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 libyaml-snake-java all 1.33-2 [321 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 bnd all 5.0.1-5 [10.1 MB] Get: 49 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 libtool all 2.5.4-3 [539 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 55 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 libunistring5 i386 1.3-1 [458 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-6 [9582 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 gettext i386 0.23.1-1 [1714 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 debhelper all 13.24.1 [920 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 openjdk-21-jdk-headless i386 21.0.6+7-1 [85.3 MB] Get: 65 http://deb.debian.org/debian trixie/main i386 default-jdk-headless i386 2:1.21-76 [1124 B] Get: 66 http://deb.debian.org/debian trixie/main i386 ivy all 2.5.2-1 [1295 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 libasm-java all 9.7.1-1 [391 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 libbsf-java all 1:2.4.0-8 [76.3 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 libcommons-cli-java all 1.6.0-1 [60.4 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 libapache-pom-java all 33-2 [5852 B] Get: 71 http://deb.debian.org/debian trixie/main i386 libcommons-parent-java all 56-1 [10.8 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 libcommons-logging-java all 1.3.0-1 [68.6 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 libjansi-java all 2.4.1-2 [100 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 libjsp-api-java all 2.3.4-3 [53.7 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 libqdox-java all 1.12.1-4 [173 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 libservlet-api-java all 4.0.1-2 [81.0 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 libxpp3-java all 1.1.4c-4 [294 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 libxstream-java all 1.4.21-1 [567 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 groovy all 2.4.21-10 [12.8 MB] Get: 80 http://deb.debian.org/debian trixie/main i386 libatinject-jsr330-api-java all 1.0+ds1-6 [5112 B] Get: 81 http://deb.debian.org/debian trixie/main i386 libcommons-collections3-java all 3.2.2-3 [530 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 libcommons-codec-java all 1.17.1-1 [303 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 libcommons-io-java all 2.18.0-1 [509 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 libcommons-compress-java all 1.27.1-2 [641 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 libcommons-lang-java all 2.6-10 [273 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 liberror-prone-java all 2.18.0-1 [22.5 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 libjsr305-java all 0.1~+svn49-12 [26.6 kB] Get: 88 http://deb.debian.org/debian trixie/main i386 libguava-java all 32.0.1-1 [2708 kB] Get: 89 http://deb.debian.org/debian trixie/main i386 libhttpcore-java all 4.4.16-1 [636 kB] Get: 90 http://deb.debian.org/debian trixie/main i386 libhttpclient-java all 4.5.14-1 [1247 kB] Get: 91 http://deb.debian.org/debian trixie/main i386 libjarjar-java all 1.4+svn142-12 [205 kB] Get: 92 http://deb.debian.org/debian trixie/main i386 libjcip-annotations-java all 20060626-6 [11.8 kB] Get: 93 http://deb.debian.org/debian trixie/main i386 libffi8 i386 3.4.7-1 [21.4 kB] Get: 94 http://deb.debian.org/debian trixie/main i386 libjna-jni i386 5.15.0-1 [64.6 kB] Get: 95 http://deb.debian.org/debian trixie/main i386 libjna-java all 5.15.0-1 [238 kB] Get: 96 http://deb.debian.org/debian trixie/main i386 libbcprov-java all 1.77-1 [5300 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 libjunixsocket-jni i386 2.6.1-1 [20.4 kB] Get: 98 http://deb.debian.org/debian trixie/main i386 libeclipse-jdt-annotation-java all 2.2.700+eclipse4.29-2 [25.5 kB] Get: 99 http://deb.debian.org/debian trixie/main i386 libjunixsocket-java all 2.6.1-1 [264 kB] Get: 100 http://deb.debian.org/debian trixie/main i386 libgoogle-gson-java all 2.10.1-1 [262 kB] Get: 101 http://deb.debian.org/debian trixie/main i386 liblightcouch-java all 0.2.0-1 [75.0 kB] Get: 102 http://deb.debian.org/debian trixie/main i386 libmongodb-java all 3.6.3-2 [1901 kB] Get: 103 http://deb.debian.org/debian trixie/main i386 liblog4j2-java all 2.19.0-2 [2310 kB] Get: 104 http://deb.debian.org/debian trixie/main i386 libjzlib-java all 1.1.3-3 [79.4 kB] Get: 105 http://deb.debian.org/debian trixie/main i386 libjsch-java all 0.2.19-1 [513 kB] Get: 106 http://deb.debian.org/debian trixie/main i386 libminlog-java all 1.3.1-1 [7808 B] Get: 107 http://deb.debian.org/debian trixie/main i386 libobjenesis-java all 3.4-1 [41.1 kB] Get: 108 http://deb.debian.org/debian trixie/main i386 libreflectasm-java all 1.11.9+dfsg-4 [25.0 kB] Get: 109 http://deb.debian.org/debian trixie/main i386 libkryo-java all 2.20-8 [161 kB] Get: 110 http://deb.debian.org/debian trixie/main i386 liblogback-java all 1:1.2.11-6 [701 kB] Get: 111 http://deb.debian.org/debian trixie/main i386 libnative-platform-jni i386 0.14-6 [12.2 kB] Get: 112 http://deb.debian.org/debian trixie/main i386 libnative-platform-java all 0.14-6 [69.8 kB] Get: 113 http://deb.debian.org/debian trixie/main i386 libxml-commons-external-java all 1.4.01-6 [240 kB] Get: 114 http://deb.debian.org/debian trixie/main i386 libxml-commons-resolver1.1-java all 1.2-11 [98.3 kB] Get: 115 http://deb.debian.org/debian trixie/main i386 libxerces2-java all 2.12.2-1 [1440 kB] Get: 116 http://deb.debian.org/debian trixie/main i386 libnekohtml-java all 1.9.22.noko2-0.1 [125 kB] Get: 117 http://deb.debian.org/debian trixie/main i386 libxbean-reflect-java all 4.5-9 [132 kB] Get: 118 http://deb.debian.org/debian trixie/main i386 libgradle-core-java all 4.4.1-22 [4318 kB] Get: 119 http://deb.debian.org/debian trixie/main i386 libbcpg-java all 1.77-1 [428 kB] Get: 120 http://deb.debian.org/debian trixie/main i386 libbsh-java all 2.0b4-20 [291 kB] Get: 121 http://deb.debian.org/debian trixie/main i386 libdd-plist-java all 1.20-1.1 [72.6 kB] Get: 122 http://deb.debian.org/debian trixie/main i386 libjaxen-java all 1.1.6-5 [214 kB] Get: 123 http://deb.debian.org/debian trixie/main i386 libdom4j-java all 2.1.4-1 [312 kB] Get: 124 http://deb.debian.org/debian trixie/main i386 libcommons-lang3-java all 3.17.0-1 [641 kB] Get: 125 http://deb.debian.org/debian trixie/main i386 libbcel-java all 6.10.0-1 [674 kB] Get: 126 http://deb.debian.org/debian trixie/main i386 libjformatstring-java all 0.10~20131207-3 [34.8 kB] Get: 127 http://deb.debian.org/debian trixie/main i386 libfindbugs-java all 3.1.0~preview2-4 [3535 kB] Get: 128 http://deb.debian.org/debian trixie/main i386 libaopalliance-java all 20070526-7 [8572 B] Get: 129 http://deb.debian.org/debian trixie/main i386 libguice-java all 5.1.0-1 [932 kB] Get: 130 http://deb.debian.org/debian trixie/main i386 libjatl-java all 0.2.3-2 [30.1 kB] Get: 131 http://deb.debian.org/debian trixie/main i386 libjcifs-java all 1.3.19+dfsg-1 [414 kB] Get: 132 http://deb.debian.org/debian trixie/main i386 libjavaewah-java all 1.2.3-1 [159 kB] Get: 133 http://deb.debian.org/debian trixie/main i386 libel-api-java all 3.0.0-3 [64.9 kB] Get: 134 http://deb.debian.org/debian trixie/main i386 libwebsocket-api-java all 1.1-2 [40.1 kB] Get: 135 http://deb.debian.org/debian trixie/main i386 libjetty9-java all 9.4.56-1 [2964 kB] Get: 136 http://deb.debian.org/debian trixie/main i386 libjgit-java all 6.7.0-2 [3152 kB] Get: 137 http://deb.debian.org/debian trixie/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 138 http://deb.debian.org/debian trixie/main i386 libplexus-utils2-java all 3.4.2-1 [258 kB] Get: 139 http://deb.debian.org/debian trixie/main i386 libwagon-provider-api-java all 3.5.3-1 [48.2 kB] Get: 140 http://deb.debian.org/debian trixie/main i386 libmaven-resolver-java all 1.9.22-1 [729 kB] Get: 141 http://deb.debian.org/debian trixie/main i386 libgeronimo-annotation-1.3-spec-java all 1.3-1 [11.1 kB] Get: 142 http://deb.debian.org/debian trixie/main i386 libmaven-parent-java all 43-2 [6252 B] Get: 143 http://deb.debian.org/debian trixie/main i386 libmaven-shared-utils-java all 3.4.2-1 [137 kB] Get: 144 http://deb.debian.org/debian trixie/main i386 libplexus-cipher-java all 2.0-1 [14.9 kB] Get: 145 http://deb.debian.org/debian trixie/main i386 libplexus-classworlds-java all 2.7.0-1 [50.6 kB] Get: 146 http://deb.debian.org/debian trixie/main i386 libplexus-component-annotations-java all 2.1.1-1 [7660 B] Get: 147 http://deb.debian.org/debian trixie/main i386 libplexus-interpolation-java all 1.27-1 [76.8 kB] Get: 148 http://deb.debian.org/debian trixie/main i386 libplexus-sec-dispatcher-java all 2.0-3 [28.3 kB] Get: 149 http://deb.debian.org/debian trixie/main i386 libgeronimo-interceptor-3.0-spec-java all 1.0.1-5 [8444 B] Get: 150 http://deb.debian.org/debian trixie/main i386 libcdi-api-java all 1.2-4 [55.3 kB] Get: 151 http://deb.debian.org/debian trixie/main i386 libsisu-inject-java all 0.3.5-1 [352 kB] Get: 152 http://deb.debian.org/debian trixie/main i386 libsisu-plexus-java all 0.3.5-1 [183 kB] Get: 153 http://deb.debian.org/debian trixie/main i386 libmaven3-core-java all 3.9.9-1 [1661 kB] Get: 154 http://deb.debian.org/debian trixie/main i386 libplexus-container-default-java all 2.1.1-1 [193 kB] Get: 155 http://deb.debian.org/debian trixie/main i386 libpolyglot-maven-java all 0.8~tobrien+git20120905-10 [74.9 kB] Get: 156 http://deb.debian.org/debian trixie/main i386 librhino-java all 1.7.15-1 [1382 kB] Get: 157 http://deb.debian.org/debian trixie/main i386 libsimple-http-java all 4.1.21-1.1 [211 kB] Get: 158 http://deb.debian.org/debian trixie/main i386 libwagon-file-java all 3.5.3-1 [8388 B] Get: 159 http://deb.debian.org/debian trixie/main i386 libjsoup-java all 1.15.3-1 [431 kB] Get: 160 http://deb.debian.org/debian trixie/main i386 libwagon-http-java all 3.5.3-1 [49.5 kB] Get: 161 http://deb.debian.org/debian trixie/main i386 libjcommander-java all 1.71-4 [73.0 kB] Get: 162 http://deb.debian.org/debian trixie/main i386 testng all 6.9.12-4 [795 kB] Get: 163 http://deb.debian.org/debian trixie/main i386 libgradle-plugins-java all 4.4.1-22 [5245 kB] Get: 164 http://deb.debian.org/debian trixie/main i386 gradle all 4.4.1-22 [400 kB] Get: 165 http://deb.debian.org/debian trixie/main i386 maven-repo-helper all 1.11 [142 kB] Get: 166 http://deb.debian.org/debian trixie/main i386 gradle-debian-helper all 2.4 [24.5 kB] Get: 167 http://deb.debian.org/debian trixie/main i386 libfml0 i386 0.1+git20221215.85f159e-1 [89.1 kB] Get: 168 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Get: 169 http://deb.debian.org/debian trixie/main i386 libfml-dev i386 0.1+git20221215.85f159e-1 [101 kB] Fetched 239 MB in 4s (60.9 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19795 files and directories currently installed.) Preparing to unpack .../000-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../001-openssl_3.4.1-1_i386.deb ... Unpacking openssl (3.4.1-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../002-ca-certificates_20241223_all.deb ... Unpacking ca-certificates (20241223) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../003-libmagic-mgc_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../004-libmagic1t64_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../005-file_1%3a5.45-3+b1_i386.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../006-gettext-base_0.23.1-1_i386.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../007-libuchardet0_0.0.8-1+b2_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../008-groff-base_1.23.0-7_i386.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../009-bsdextrautils_2.40.4-3_i386.deb ... Unpacking bsdextrautils (2.40.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../010-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../011-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../012-ca-certificates-java_20240118_all.deb ... Unpacking ca-certificates-java (20240118) ... Selecting previously unselected package java-common. Preparing to unpack .../013-java-common_0.76_all.deb ... Unpacking java-common (0.76) ... Selecting previously unselected package liblcms2-2:i386. Preparing to unpack .../014-liblcms2-2_2.16-2_i386.deb ... 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Setting up liblcms2-2:i386 (2.16-2) ... Setting up libjcommander-java (1.71-4) ... Setting up libslf4j-java (1.7.32-1) ... Setting up libplexus-utils2-java (3.4.2-1) ... Setting up libplexus-classworlds-java (2.7.0-1) ... Setting up libqdox-java (1.12.1-4) ... Setting up libicu72:i386 (72.1-6) ... Setting up libjsr305-java (0.1~+svn49-12) ... Setting up libsimple-http-java (4.1.21-1.1) ... Setting up bsdextrautils (2.40.4-3) ... Setting up java-common (0.76) ... Setting up libjcip-annotations-java (20060626-6) ... Setting up libobjenesis-java (3.4-1) ... Setting up libaopalliance-java (20070526-7) ... Setting up libcommons-cli-java (1.6.0-1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up liblogback-java (1:1.2.11-6) ... Setting up libminlog-java (1.3.1-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libgoogle-gson-java (2.10.1-1) ... Setting up unzip (6.0-28) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libmagic1t64:i386 (1:5.45-3+b1) ... Setting up libasm-java (9.7.1-1) ... Setting up libdd-plist-java (1.20-1.1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libel-api-java (3.0.0-3) ... Setting up libplexus-component-annotations-java (2.1.1-1) ... Setting up file (1:5.45-3+b1) ... Setting up libpolyglot-maven-java (0.8~tobrien+git20120905-10) ... Setting up libfelix-gogo-runtime-java (0.16.2-2) ... Setting up libjzlib-java (1.1.3-3) ... Setting up libfml0:i386 (0.1+git20221215.85f159e-1) ... Setting up libelf1t64:i386 (0.192-4) ... Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... Setting up libgeronimo-interceptor-3.0-spec-java (1.0.1-5) ... Setting up libcommons-collections3-java (3.2.2-3) ... Setting up libreflectasm-java (1.11.9+dfsg-4) ... Setting up librhino-java (1.7.15-1) ... Setting up autotools-dev (20220109.1) ... Setting up libbsf-java (1:2.4.0-8) ... Setting up libosgi-annotation-java (8.1.0-1) ... Setting up libjformatstring-java (0.10~20131207-3) ... Setting up libjavaewah-java (1.2.3-1) ... Setting up libjpeg62-turbo:i386 (1:2.1.5-3+b1) ... Setting up libjaxen-java (1.1.6-5) ... Setting up libnspr4:i386 (2:4.36-1) ... Setting up libeclipse-jdt-annotation-java (2.2.700+eclipse4.29-2) ... Setting up libjansi-java (2.4.1-2) ... Setting up libapache-pom-java (33-2) ... Setting up libxpp3-java (1.1.4c-4) ... Setting up libatinject-jsr330-api-java (1.0+ds1-6) ... Setting up libwebsocket-api-java (1.1-2) ... Setting up libplexus-interpolation-java (1.27-1) ... Setting up libunistring5:i386 (1.3-1) ... Setting up libxml-commons-resolver1.1-java (1.2-11) ... Setting up libkryo-java (2.20-8) ... Setting up libxz-java (1.9-1) ... Setting up autopoint (0.23.1-1) ... Setting up libjunixsocket-jni (2.6.1-1) ... Setting up libfelix-framework-java (4.6.1-3) ... Setting up libpcsclite1:i386 (2.3.1-1) ... Setting up libmongodb-java (3.6.3-2) ... Setting up libhamcrest-java (2.2-2) ... Setting up libbsh-java (2.0b4-20) ... Setting up libjsp-api-java (2.3.4-3) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libjarjar-java (1.4+svn142-12) ... Setting up libffi8:i386 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libjsoup-java (1.15.3-1) ... Setting up libuchardet0:i386 (0.0.8-1+b2) ... Setting up libxml-commons-external-java (1.4.01-6) ... Setting up libxbean-reflect-java (4.5-9) ... Setting up libservlet-api-java (4.0.1-2) ... Setting up libnative-platform-jni (0.14-6) ... Setting up libhttpcore-java (4.4.16-1) ... Setting up libbcpg-java (1.77-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libxerces2-java (2.12.2-1) ... Setting up libantlr-java (2.7.7+dfsg-14) ... Setting up libyaml-snake-java (1.33-2) ... Setting up openssl (3.4.1-1) ... Setting up libcdi-api-java (1.2-4) ... Setting up libhawtjni-runtime-java (1.18-1) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libjatl-java (0.2.3-2) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libdom4j-java (2.1.4-1) ... Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up libwagon-provider-api-java (3.5.3-1) ... Setting up libnative-platform-java (0.14-6) ... Setting up libosgi-core-java (8.0.0-2) ... Setting up libxstream-java (1.4.21-1) ... Setting up libnekohtml-java (1.9.22.noko2-0.1) ... Setting up gettext (0.23.1-1) ... Setting up libjetty9-java (9.4.56-1) ... Setting up libfml-dev:i386 (0.1+git20221215.85f159e-1) ... Setting up java-wrappers (0.5) ... Setting up libosgi-compendium-java (7.0.0-1) ... Setting up libtool (2.5.4-3) ... Setting up libmaven-parent-java (43-2) ... Setting up libcommons-parent-java (56-1) ... Setting up libcommons-logging-java (1.3.0-1) ... Setting up libsisu-inject-java (0.3.5-1) ... Setting up libnss3:i386 (2:3.108-1) ... Setting up libcommons-lang-java (2.6-10) ... Setting up libjunixsocket-java (2.6.1-1) ... Setting up libplexus-cipher-java (2.0-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libsisu-plexus-java (0.3.5-1) ... Setting up testng (6.9.12-4) ... Setting up libjna-jni (5.15.0-1) ... Setting up libcommons-lang3-java (3.17.0-1) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up libfelix-resolver-java (1.16.0-1) ... Setting up libjansi-native-java (1.8-2) ... Setting up groff-base (1.23.0-7) ... Setting up libjna-java (5.15.0-1) ... Setting up libjansi1-java (1.18-3.1) ... Setting up libplexus-sec-dispatcher-java (2.0-3) ... Setting up ca-certificates-java (20240118) ... No JRE found. Skipping Java certificates setup. Setting up libwagon-file-java (3.5.3-1) ... Setting up libcommons-codec-java (1.17.1-1) ... Setting up libjline2-java (2.14.6-5) ... Setting up openjdk-21-jre-headless:i386 (21.0.6+7-1) ... update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libcommons-io-java (2.18.0-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libmaven-resolver-java (1.9.22-1) ... Setting up libbcel-java (6.10.0-1) ... Setting up libhttpclient-java (4.5.14-1) ... Setting up liblightcouch-java (0.2.0-1) ... Setting up libwagon-http-java (3.5.3-1) ... Setting up libmaven-shared-utils-java (3.4.2-1) ... Setting up libfindbugs-java (3.1.0~preview2-4) ... Setting up libcommons-compress-java (1.27.1-2) ... Setting up liblog4j2-java (2.19.0-2) ... Setting up debhelper (13.24.1) ... Setting up libjsch-java (0.2.19-1) ... Setting up libjgit-java (6.7.0-2) ... Setting up liberror-prone-java (2.18.0-1) ... Setting up libguava-java (32.0.1-1) ... Setting up libplexus-container-default-java (2.1.1-1) ... Setting up libguice-java (5.1.0-1) ... Setting up libmaven3-core-java (3.9.9-1) ... Processing triggers for libc-bin (2.40-6) ... Processing triggers for ca-certificates-java (20240118) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:BJCA_Global_Root_CA1.pem Adding debian:BJCA_Global_Root_CA2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:CommScope_Public_Trust_ECC_Root-01.pem Adding debian:CommScope_Public_Trust_ECC_Root-02.pem Adding debian:CommScope_Public_Trust_RSA_Root-01.pem Adding debian:CommScope_Public_Trust_RSA_Root-02.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureSign_Root_CA12.pem Adding debian:SecureSign_Root_CA14.pem Adding debian:SecureSign_Root_CA15.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_CYBER_Root_CA.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustAsia_Global_Root_CA_G3.pem Adding debian:TrustAsia_Global_Root_CA_G4.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up antlr (2.7.7+dfsg-14) ... Setting up ivy (2.5.2-1) ... Setting up ant (1.10.15-1) ... Setting up junit4 (4.13.2-5) ... Setting up groovy (2.4.21-10) ... update-alternatives: using /usr/share/groovy/bin/groovy to provide /usr/bin/groovy (groovy) in auto mode update-alternatives: using /usr/share/groovy/bin/groovyc to provide /usr/bin/groovyc (groovyc) in auto mode update-alternatives: using /usr/share/groovy/bin/grape to provide /usr/bin/grape (grape) in auto mode update-alternatives: using /usr/share/groovy/bin/startGroovy to provide /usr/bin/startGroovy (startGroovy) in auto mode update-alternatives: using /usr/share/groovy/bin/groovysh to provide /usr/bin/groovysh (groovysh) in auto mode update-alternatives: using /usr/share/groovy/bin/java2groovy to provide /usr/bin/java2groovy (java2groovy) in auto mode update-alternatives: using /usr/share/groovy/bin/groovyConsole to provide /usr/bin/groovyConsole (groovyConsole) in auto mode update-alternatives: using /usr/share/groovy/bin/groovydoc to provide /usr/bin/groovydoc (groovydoc) in auto mode Setting up openjdk-21-jdk-headless:i386 (21.0.6+7-1) ... update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jwebserver to provide /usr/bin/jwebserver (jwebserver) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up default-jre-headless (2:1.21-76) ... Setting up maven-repo-helper (1.11) ... Setting up ant-optional (1.10.15-1) ... Setting up bnd (5.0.1-5) ... Setting up default-jdk-headless (2:1.21-76) ... Setting up libgradle-core-java (4.4.1-22) ... Setting up libgradle-plugins-java (4.4.1-22) ... Setting up gradle (4.4.1-22) ... Setting up gradle-debian-helper (2.4) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20240118) ... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gatk-fermilite_1.2.1+dfsg-2_source.changes dpkg-buildpackage: info: source package gatk-fermilite dpkg-buildpackage: info: source version 1.2.1+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Pierre Gruet dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --with maven_repo_helper debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg' dh_auto_clean sh -c "find . -wholename .*build/tmp | xargs echo | sed -e 's^build/tmp^build^g' | xargs rm -Rf" sh -c "find . -wholename .*build/debian | xargs echo | sed -e 's^build/tmp^build^g' | xargs rm -Rf" rm -Rf /build/reproducible-path/gatk-fermilite-1.2.1\+dfsg/.gradle /build/reproducible-path/gatk-fermilite-1.2.1\+dfsg/buildSrc/.gradle .m2 if [ -e src/main/c/org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.c.save ]; then \ mv src/main/c/org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.c.save src/main/c/org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.c; \ fi # Cleaning the C part cd src/main/c/ && make clean make[2]: Entering directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/c' rm -rf fermi-lite *.o *.so make[2]: Leaving directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/c' # Cleaning the custom pom rm debian/pom.xml rm: cannot remove 'debian/pom.xml': No such file or directory make[1]: [debian/rules:20: override_dh_auto_clean] Error 1 (ignored) make[1]: Leaving directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg' dh_clean debian/rules binary dh binary --with maven_repo_helper dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg' # Putting the version of fermi-lite in the JNI file so that is can output version information. cp src/main/c/org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.c src/main/c/org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.c.save fmlVersion=$(dpkg -s libfml-dev | grep "Version" | sed 's/Version: \(.*\)-.*/\1/') && \ sed -i "s/FML_COMMIT/\"$fmlVersion\"/" src/main/c/org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.c # Putting the version number in the custom pom. sed 's/\(VERSION_PACKAGE\)/\11.2.1+dfsg/; s/VERSION_PACKAGE\(.*\)+dfsg[0-9]*/\1/' debian/pom.xml.in > debian/pom.xml dh_auto_configure make[1]: Leaving directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg' dh_auto_build mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gatk-fermilite -Dfile.encoding=UTF-8 --parallel --max-workers=11 jar openjdk version "21.0.6" 2025-01-21 OpenJDK Runtime Environment (build 21.0.6+7-Debian-1) OpenJDK Server VM (build 21.0.6+7-Debian-1, mixed mode, sharing) Initialized native services in: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/native To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-i386/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' An attempt to start the daemon took 1.949 secs. The client will now receive all logging from the daemon (pid: 59882). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-59882.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 11 worker leases. Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@e2154b Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@e2154b Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@62dacc Starting Build Compiling initialization script '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@b7e3ba Compiling initialization script '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Compiling settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle' using SubsetScriptTransformer. Compiling settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle' using BuildScriptTransformer. Settings evaluated using settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle'. Projects loaded. Root project using build file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build.gradle'. Included projects: [root project 'gatk-fermilite'] Keep-alive timer started Adding Debian repository to project 'gatk-fermilite' Parallel execution is an incubating feature. Evaluating root project 'gatk-fermilite' using build file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build.gradle'. Compiling build file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build.gradle' using SubsetScriptTransformer. Compiling build file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build.gradle' using BuildScriptTransformer. Adding Maven pom generation to project 'gatk-fermilite' Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@14bb7c2 Tasks to be executed: [task ':compileJava', task ':buildFermiLib', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@62dacc Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@f8e847 Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@13d6935 :compileJava (Thread[#54,Task worker for ':' Thread 5,5,main]) started. :compileJava Putting task artifact state for task ':compileJava' into context took 0.016 secs. Up-to-date check for task ':compileJava' took 0.034 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. Compiling with JDK Java compiler API. :compileJava (Thread[#54,Task worker for ':' Thread 5,5,main]) completed. Took 2.351 secs. :buildFermiLib (Thread[#54,Task worker for ':' Thread 5,5,main]) started. :buildFermiLib Putting task artifact state for task ':buildFermiLib' into context took 0.0 secs. Up-to-date check for task ':buildFermiLib' took 0.007 secs. It is not up-to-date because: No history is available. using /usr/lib/jvm/java-21-openjdk-i386 -> /usr/lib/jvm/java-21-openjdk-i386 as JAVA_HOME Starting process 'command 'make''. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/c Command: make Successfully started process 'command 'make'' make[1]: Entering directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/c' gcc -g -O2 -Wall -fPIC -I/usr/lib/jvm/java-21-openjdk-i386/include -I/usr/lib/jvm/java-21-openjdk-i386/include/linux -Wdate-time -D_FORTIFY_SOURCE=2 -c -o org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.o org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.c gcc -dynamiclib -shared -o libfml.so org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.o /usr/lib/i386-linux-gnu/libfml.so -lm -lz -lpthread make[1]: Leaving directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/c' :buildFermiLib (Thread[#54,Task worker for ':' Thread 5,5,main]) completed. Took 0.476 secs. :processResources (Thread[#54,Task worker for ':' Thread 5,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/resources', not found Skipping task ':processResources' as it has no source files and no previous output files. :processResources NO-SOURCE :processResources (Thread[#54,Task worker for ':' Thread 5,5,main]) completed. Took 0.023 secs. :classes (Thread[#54,Task worker for ':' Thread 5,5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes (Thread[#54,Task worker for ':' Thread 5,5,main]) completed. Took 0.006 secs. :debianMavenPom (Thread[#54,Task worker for ':' Thread 5,5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. Up-to-date check for task ':debianMavenPom' took 0.001 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/debian/gatk-fermilite.pom :debianMavenPom (Thread[#54,Task worker for ':' Thread 5,5,main]) completed. Took 0.163 secs. :jar (Thread[#54,Task worker for ':' Thread 5,5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. Up-to-date check for task ':jar' took 0.016 secs. It is not up-to-date because: No history is available. :jar (Thread[#54,Task worker for ':' Thread 5,5,main]) completed. Took 0.129 secs. BUILD SUCCESSFUL in 14s 4 actionable tasks: 4 executed debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg' # The shared lib should be looked for in its build directory. LD_LIBRARY_PATH="$LD_LIBRARY_PATH:$(readlink -f src/main/c)" dh_auto_test mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gatk-fermilite -Dfile.encoding=UTF-8 --parallel --max-workers=11 test openjdk version "21.0.6" 2025-01-21 OpenJDK Runtime Environment (build 21.0.6+7-Debian-1) OpenJDK Server VM (build 21.0.6+7-Debian-1, mixed mode, sharing) Initialized native services in: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/native To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-i386/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' An attempt to start the daemon took 1.546 secs. The client will now receive all logging from the daemon (pid: 60591). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-60591.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 11 worker leases. Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@f67065 Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@f67065 Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1b809d6 Starting Build Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@1ae08c2 Settings evaluated using settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle'. Projects loaded. Root project using build file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build.gradle'. Included projects: [root project 'gatk-fermilite'] Keep-alive timer started Adding Debian repository to project 'gatk-fermilite' Parallel execution is an incubating feature. Evaluating root project 'gatk-fermilite' using build file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build.gradle'. Adding Maven pom generation to project 'gatk-fermilite' Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@2a208d Tasks to be executed: [task ':compileJava', task ':buildFermiLib', task ':processResources', task ':classes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test'] Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1b809d6 Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@11b70bd Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@13f53f3 :compileJava (Thread[#53,Task worker for ':' Thread 4,5,main]) started. :compileJava Putting task artifact state for task ':compileJava' into context took 0.006 secs. Skipping task ':compileJava' as it is up-to-date (took 0.046 secs). :compileJava UP-TO-DATE :compileJava (Thread[#53,Task worker for ':' Thread 4,5,main]) completed. Took 0.099 secs. :buildFermiLib (Thread[#53,Task worker for ':' Thread 4,5,main]) started. :buildFermiLib Putting task artifact state for task ':buildFermiLib' into context took 0.0 secs. Skipping task ':buildFermiLib' as it is up-to-date (took 0.004 secs). :buildFermiLib UP-TO-DATE :buildFermiLib (Thread[#53,Task worker for ':' Thread 4,5,main]) completed. Took 0.01 secs. :processResources (Thread[#53,Task worker for ':' Thread 4,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/resources', not found Skipping task ':processResources' as it has no source files and no previous output files. :processResources NO-SOURCE :processResources (Thread[#53,Task worker for ':' Thread 4,5,main]) completed. Took 0.003 secs. :classes (Thread[#53,Task worker for ':' Thread 4,5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes UP-TO-DATE :classes (Thread[#53,Task worker for ':' Thread 4,5,main]) completed. Took 0.001 secs. :compileTestJava (Thread[#53,Task worker for ':' Thread 4,5,main]) started. :compileTestJava Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@14bf92f Loading the Maven rules... Replacing org.testng:testng:jar:6.9.6 -> org.testng:testng:jar:debian Passing through org.beanshell:bsh:jar:debian Passing through com.beust:jcommander:jar:debian Up-to-date check for task ':compileTestJava' took 0.825 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileTestJava'. Compiling with JDK Java compiler API. :compileTestJava (Thread[#53,Task worker for ':' Thread 4,5,main]) completed. Took 2.68 secs. :processTestResources (Thread[#53,Task worker for ':' Thread 4,5,main]) started. :processTestResources Putting task artifact state for task ':processTestResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/test/resources', not found Skipping task ':processTestResources' as it has no source files and no previous output files. :processTestResources NO-SOURCE :processTestResources (Thread[#53,Task worker for ':' Thread 4,5,main]) completed. Took 0.003 secs. :testClasses (Thread[#53,Task worker for ':' Thread 4,5,main]) started. :testClasses Skipping task ':testClasses' as it has no actions. :testClasses (Thread[#53,Task worker for ':' Thread 4,5,main]) completed. Took 0.001 secs. :test (Thread[#53,Task worker for ':' Thread 4,5,main]) started. :test Putting task artifact state for task ':test' into context took 0.0 secs. Up-to-date check for task ':test' took 0.142 secs. It is not up-to-date because: No history is available. Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg Command: /usr/lib/jvm/java-21-openjdk-i386/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath5028028391587859174txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' Successfully started process 'Gradle Test Executor 1' Gradle Test Executor 1 started executing tests. Gradle Test Executor 1 finished executing tests. Results: SUCCESS (2 tests, 2 successes, 0 failures, 0 skipped) Finished generating test XML results (0.015 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/test-results/test Generating HTML test report... Finished generating test html results (0.034 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/reports/tests/test :test (Thread[#53,Task worker for ':' Thread 4,5,main]) completed. Took 2.151 secs. BUILD SUCCESSFUL in 13s 4 actionable tasks: 2 executed, 2 up-to-date make[1]: Leaving directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install dh_install mh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libgatk-fermilite-java: substitution variable ${java:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'libgatk-fermilite-java' in '../libgatk-fermilite-java_1.2.1+dfsg-2_all.deb'. dpkg-deb: building package 'libgatk-fermilite-jni-dbgsym' in '../libgatk-fermilite-jni-dbgsym_1.2.1+dfsg-2_i386.deb'. dpkg-deb: building package 'libgatk-fermilite-jni' in '../libgatk-fermilite-jni_1.2.1+dfsg-2_i386.deb'. dpkg-genbuildinfo --build=binary -O../gatk-fermilite_1.2.1+dfsg-2_i386.buildinfo dpkg-genchanges --build=binary -O../gatk-fermilite_1.2.1+dfsg-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/52976 and its subdirectories I: Current time: Fri Feb 21 04:28:51 -12 2025 I: pbuilder-time-stamp: 1740155331 Fri Feb 21 16:28:51 UTC 2025 I: Signing ./b1/gatk-fermilite_1.2.1+dfsg-2_i386.buildinfo as gatk-fermilite_1.2.1+dfsg-2_i386.buildinfo.asc Fri Feb 21 16:28:51 UTC 2025 I: Signed ./b1/gatk-fermilite_1.2.1+dfsg-2_i386.buildinfo as ./b1/gatk-fermilite_1.2.1+dfsg-2_i386.buildinfo.asc Fri Feb 21 16:28:51 UTC 2025 - build #1 for gatk-fermilite/trixie/i386 on ionos12-i386 done. Starting cleanup. All cleanup done. Fri Feb 21 16:28:51 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-dQHQ6yRd, removing. /srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Feb 21 16:28 b1 drwxr-xr-x 2 jenkins jenkins 4096 Feb 21 16:27 b2 -rw-r--r-- 1 jenkins jenkins 2209 Apr 5 2022 gatk-fermilite_1.2.1+dfsg-2.dsc -rw------- 1 jenkins jenkins 3379 Feb 21 16:27 rbuildlog.D7MAybv /srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L/b1: total 176 -rw-r--r-- 1 jenkins jenkins 96840 Feb 21 16:28 build.log -rw-r--r-- 1 jenkins jenkins 7468 Feb 21 16:28 gatk-fermilite_1.2.1+dfsg-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2209 Feb 21 16:28 gatk-fermilite_1.2.1+dfsg-2.dsc -rw-r--r-- 1 jenkins jenkins 9925 Feb 21 16:28 gatk-fermilite_1.2.1+dfsg-2_i386.buildinfo -rw-r--r-- 1 jenkins jenkins 10807 Feb 21 16:28 gatk-fermilite_1.2.1+dfsg-2_i386.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1942 Feb 21 16:28 gatk-fermilite_1.2.1+dfsg-2_i386.changes -rw-r--r-- 1 jenkins jenkins 1291 Feb 21 16:28 gatk-fermilite_1.2.1+dfsg-2_source.changes -rw-r--r-- 1 jenkins jenkins 12144 Feb 21 16:28 libgatk-fermilite-java_1.2.1+dfsg-2_all.deb -rw-r--r-- 1 jenkins jenkins 12528 Feb 21 16:28 libgatk-fermilite-jni-dbgsym_1.2.1+dfsg-2_i386.deb -rw-r--r-- 1 jenkins jenkins 4920 Feb 21 16:28 libgatk-fermilite-jni_1.2.1+dfsg-2_i386.deb /srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L/b2: total 0 Fri Feb 21 16:28:52 UTC 2025 I: Deleting $TMPDIR on ionos12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Feb 21 04:27:02 -12 2025 I: pbuilder-time-stamp: 1740155222 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [gatk-fermilite_1.2.1+dfsg-2.dsc] I: copying [./gatk-fermilite_1.2.1+dfsg.orig.tar.xz] I: copying [./gatk-fermilite_1.2.1+dfsg-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./gatk-fermilite_1.2.1+dfsg-2.dsc: unsupported subcommand dpkg-source: info: extracting gatk-fermilite in gatk-fermilite-1.2.1+dfsg dpkg-source: info: unpacking gatk-fermilite_1.2.1+dfsg.orig.tar.xz dpkg-source: info: unpacking gatk-fermilite_1.2.1+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying build.patch dpkg-source: info: applying use_Debian_fml.patch dpkg-source: info: applying rename_bseq1_t.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/52976/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='5fa27caf3e65493795fb16c72cc05536' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='52976' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L/pbuilderrc_S9Bb --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L/b1 --logfile b1/build.log gatk-fermilite_1.2.1+dfsg-2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos12-i386 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/52976/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), default-jdk-headless, gradle-debian-helper, libfml-dev, maven-repo-helper, testng dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19795 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on default-jdk-headless; however: Package default-jdk-headless is not installed. pbuilder-satisfydepends-dummy depends on gradle-debian-helper; however: Package gradle-debian-helper is not installed. pbuilder-satisfydepends-dummy depends on libfml-dev; however: Package libfml-dev is not installed. pbuilder-satisfydepends-dummy depends on maven-repo-helper; however: Package maven-repo-helper is not installed. pbuilder-satisfydepends-dummy depends on testng; however: Package testng is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: ant{a} ant-optional{a} antlr{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bnd{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} debhelper{a} default-jdk-headless{a} default-jre-headless{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gradle{a} gradle-debian-helper{a} groff-base{a} groovy{a} intltool-debian{a} ivy{a} java-common{a} java-wrappers{a} junit4{a} libantlr-java{a} libaopalliance-java{a} libapache-pom-java{a} libarchive-zip-perl{a} libasm-java{a} libatinject-jsr330-api-java{a} libbcel-java{a} libbcpg-java{a} libbcprov-java{a} libbsf-java{a} libbsh-java{a} libcdi-api-java{a} libcommons-cli-java{a} libcommons-codec-java{a} libcommons-collections3-java{a} libcommons-compress-java{a} libcommons-io-java{a} libcommons-lang-java{a} libcommons-lang3-java{a} libcommons-logging-java{a} libcommons-parent-java{a} libdd-plist-java{a} libdebhelper-perl{a} libdom4j-java{a} libeclipse-jdt-annotation-java{a} libel-api-java{a} libelf1t64{a} liberror-prone-java{a} libfelix-framework-java{a} libfelix-gogo-runtime-java{a} libfelix-resolver-java{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfindbugs-java{a} libfml-dev{a} libfml0{a} libgeronimo-annotation-1.3-spec-java{a} libgeronimo-interceptor-3.0-spec-java{a} libgoogle-gson-java{a} libgradle-core-java{a} libgradle-plugins-java{a} libguava-java{a} libguice-java{a} libhamcrest-java{a} libhawtjni-runtime-java{a} libhttpclient-java{a} libhttpcore-java{a} libicu72{a} libjansi-java{a} libjansi-native-java{a} libjansi1-java{a} libjarjar-java{a} libjatl-java{a} libjavaewah-java{a} libjaxen-java{a} libjcifs-java{a} libjcip-annotations-java{a} libjcommander-java{a} libjetty9-java{a} libjformatstring-java{a} libjgit-java{a} libjline2-java{a} libjna-java{a} libjna-jni{a} libjpeg62-turbo{a} libjs-jquery{a} libjsch-java{a} libjsoup-java{a} libjsp-api-java{a} libjsr305-java{a} libjunixsocket-java{a} libjunixsocket-jni{a} libjzlib-java{a} libkryo-java{a} liblcms2-2{a} liblightcouch-java{a} liblog4j2-java{a} liblogback-java{a} libmagic-mgc{a} libmagic1t64{a} libmaven-parent-java{a} libmaven-resolver-java{a} libmaven-shared-utils-java{a} libmaven3-core-java{a} libminlog-java{a} libmongodb-java{a} libnative-platform-java{a} libnative-platform-jni{a} libnekohtml-java{a} libnspr4{a} libnss3{a} libobjenesis-java{a} libosgi-annotation-java{a} libosgi-compendium-java{a} libosgi-core-java{a} libpcsclite1{a} libpipeline1{a} libplexus-cipher-java{a} libplexus-classworlds-java{a} libplexus-component-annotations-java{a} libplexus-container-default-java{a} libplexus-interpolation-java{a} libplexus-sec-dispatcher-java{a} libplexus-utils2-java{a} libpolyglot-maven-java{a} libqdox-java{a} libreflectasm-java{a} librhino-java{a} libservlet-api-java{a} libsimple-http-java{a} libsisu-inject-java{a} libsisu-plexus-java{a} libslf4j-java{a} libtool{a} libuchardet0{a} libunistring5{a} libwagon-file-java{a} libwagon-http-java{a} libwagon-provider-api-java{a} libwebsocket-api-java{a} libxbean-reflect-java{a} libxerces2-java{a} libxml-commons-external-java{a} libxml-commons-resolver1.1-java{a} libxml2{a} libxpp3-java{a} libxstream-java{a} libxz-java{a} libyaml-snake-java{a} m4{a} man-db{a} maven-repo-helper{a} openjdk-21-jdk-headless{a} openjdk-21-jre-headless{a} openssl{a} po-debconf{a} sensible-utils{a} testng{a} unzip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libasound2t64 libbindex-java libcups2t64 libfontconfig1 libfreetype6 libgpars-groovy-java libharfbuzz0b libltdl-dev libmail-sendmail-perl libreflectasm-java-doc lynx wget 0 packages upgraded, 169 newly installed, 0 to remove and 0 not upgraded. Need to get 239 MB of archives. After unpacking 514 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 openssl i386 3.4.1-1 [1432 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 ca-certificates all 20241223 [164 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.23.1-1 [245 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-7 [1199 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.4-3 [96.2 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 ca-certificates-java all 20240118 [11.6 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 java-common all 0.76 [6776 B] Get: 15 http://deb.debian.org/debian trixie/main i386 liblcms2-2 i386 2.16-2 [171 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libjpeg62-turbo i386 1:2.1.5-3+b1 [171 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 libnspr4 i386 2:4.36-1 [119 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libnss3 i386 2:3.108-1 [1505 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libpcsclite1 i386 2.3.1-1 [57.3 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 openjdk-21-jre-headless i386 21.0.6+7-1 [43.2 MB] Get: 21 http://deb.debian.org/debian trixie/main i386 default-jre-headless i386 2:1.21-76 [3192 B] Get: 22 http://deb.debian.org/debian trixie/main i386 ant all 1.10.15-1 [2163 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 ant-optional all 1.10.15-1 [456 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libantlr-java all 2.7.7+dfsg-14 [458 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 antlr all 2.7.7+dfsg-14 [8376 B] Get: 26 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-5 [301 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 automake all 1:1.17-3 [862 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 autopoint all 0.23.1-1 [770 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 unzip i386 6.0-28 [166 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 java-wrappers all 0.5 [8848 B] Get: 33 http://deb.debian.org/debian trixie/main i386 libhamcrest-java all 2.2-2 [121 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 junit4 all 4.13.2-5 [350 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 libfelix-framework-java all 4.6.1-3 [577 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 libfelix-gogo-runtime-java all 0.16.2-2 [117 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 libosgi-annotation-java all 8.1.0-1 [9436 B] Get: 38 http://deb.debian.org/debian trixie/main i386 libosgi-core-java all 8.0.0-2 [182 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 libfelix-resolver-java all 1.16.0-1 [180 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 libhawtjni-runtime-java all 1.18-1 [36.3 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libjansi-native-java all 1.8-2 [26.0 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 libjansi1-java all 1.18-3.1 [66.6 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 libjline2-java all 2.14.6-5 [151 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 libosgi-compendium-java all 7.0.0-1 [477 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 libslf4j-java all 1.7.32-1 [144 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 libxz-java all 1.9-1 [143 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 libyaml-snake-java all 1.33-2 [321 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 bnd all 5.0.1-5 [10.1 MB] Get: 49 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 libtool all 2.5.4-3 [539 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 55 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 libunistring5 i386 1.3-1 [458 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-6 [9582 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 gettext i386 0.23.1-1 [1714 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 debhelper all 13.24.1 [920 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 openjdk-21-jdk-headless i386 21.0.6+7-1 [85.3 MB] Get: 65 http://deb.debian.org/debian trixie/main i386 default-jdk-headless i386 2:1.21-76 [1124 B] Get: 66 http://deb.debian.org/debian trixie/main i386 ivy all 2.5.2-1 [1295 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 libasm-java all 9.7.1-1 [391 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 libbsf-java all 1:2.4.0-8 [76.3 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 libcommons-cli-java all 1.6.0-1 [60.4 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 libapache-pom-java all 33-2 [5852 B] Get: 71 http://deb.debian.org/debian trixie/main i386 libcommons-parent-java all 56-1 [10.8 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 libcommons-logging-java all 1.3.0-1 [68.6 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 libjansi-java all 2.4.1-2 [100 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 libjsp-api-java all 2.3.4-3 [53.7 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 libqdox-java all 1.12.1-4 [173 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 libservlet-api-java all 4.0.1-2 [81.0 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 libxpp3-java all 1.1.4c-4 [294 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 libxstream-java all 1.4.21-1 [567 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 groovy all 2.4.21-10 [12.8 MB] Get: 80 http://deb.debian.org/debian trixie/main i386 libatinject-jsr330-api-java all 1.0+ds1-6 [5112 B] Get: 81 http://deb.debian.org/debian trixie/main i386 libcommons-collections3-java all 3.2.2-3 [530 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 libcommons-codec-java all 1.17.1-1 [303 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 libcommons-io-java all 2.18.0-1 [509 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 libcommons-compress-java all 1.27.1-2 [641 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 libcommons-lang-java all 2.6-10 [273 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 liberror-prone-java all 2.18.0-1 [22.5 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 libjsr305-java all 0.1~+svn49-12 [26.6 kB] Get: 88 http://deb.debian.org/debian trixie/main i386 libguava-java all 32.0.1-1 [2708 kB] Get: 89 http://deb.debian.org/debian trixie/main i386 libhttpcore-java all 4.4.16-1 [636 kB] Get: 90 http://deb.debian.org/debian trixie/main i386 libhttpclient-java all 4.5.14-1 [1247 kB] Get: 91 http://deb.debian.org/debian trixie/main i386 libjarjar-java all 1.4+svn142-12 [205 kB] Get: 92 http://deb.debian.org/debian trixie/main i386 libjcip-annotations-java all 20060626-6 [11.8 kB] Get: 93 http://deb.debian.org/debian trixie/main i386 libffi8 i386 3.4.7-1 [21.4 kB] Get: 94 http://deb.debian.org/debian trixie/main i386 libjna-jni i386 5.15.0-1 [64.6 kB] Get: 95 http://deb.debian.org/debian trixie/main i386 libjna-java all 5.15.0-1 [238 kB] Get: 96 http://deb.debian.org/debian trixie/main i386 libbcprov-java all 1.77-1 [5300 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 libjunixsocket-jni i386 2.6.1-1 [20.4 kB] Get: 98 http://deb.debian.org/debian trixie/main i386 libeclipse-jdt-annotation-java all 2.2.700+eclipse4.29-2 [25.5 kB] Get: 99 http://deb.debian.org/debian trixie/main i386 libjunixsocket-java all 2.6.1-1 [264 kB] Get: 100 http://deb.debian.org/debian trixie/main i386 libgoogle-gson-java all 2.10.1-1 [262 kB] Get: 101 http://deb.debian.org/debian trixie/main i386 liblightcouch-java all 0.2.0-1 [75.0 kB] Get: 102 http://deb.debian.org/debian trixie/main i386 libmongodb-java all 3.6.3-2 [1901 kB] Get: 103 http://deb.debian.org/debian trixie/main i386 liblog4j2-java all 2.19.0-2 [2310 kB] Get: 104 http://deb.debian.org/debian trixie/main i386 libjzlib-java all 1.1.3-3 [79.4 kB] Get: 105 http://deb.debian.org/debian trixie/main i386 libjsch-java all 0.2.19-1 [513 kB] Get: 106 http://deb.debian.org/debian trixie/main i386 libminlog-java all 1.3.1-1 [7808 B] Get: 107 http://deb.debian.org/debian trixie/main i386 libobjenesis-java all 3.4-1 [41.1 kB] Get: 108 http://deb.debian.org/debian trixie/main i386 libreflectasm-java all 1.11.9+dfsg-4 [25.0 kB] Get: 109 http://deb.debian.org/debian trixie/main i386 libkryo-java all 2.20-8 [161 kB] Get: 110 http://deb.debian.org/debian trixie/main i386 liblogback-java all 1:1.2.11-6 [701 kB] Get: 111 http://deb.debian.org/debian trixie/main i386 libnative-platform-jni i386 0.14-6 [12.2 kB] Get: 112 http://deb.debian.org/debian trixie/main i386 libnative-platform-java all 0.14-6 [69.8 kB] Get: 113 http://deb.debian.org/debian trixie/main i386 libxml-commons-external-java all 1.4.01-6 [240 kB] Get: 114 http://deb.debian.org/debian trixie/main i386 libxml-commons-resolver1.1-java all 1.2-11 [98.3 kB] Get: 115 http://deb.debian.org/debian trixie/main i386 libxerces2-java all 2.12.2-1 [1440 kB] Get: 116 http://deb.debian.org/debian trixie/main i386 libnekohtml-java all 1.9.22.noko2-0.1 [125 kB] Get: 117 http://deb.debian.org/debian trixie/main i386 libxbean-reflect-java all 4.5-9 [132 kB] Get: 118 http://deb.debian.org/debian trixie/main i386 libgradle-core-java all 4.4.1-22 [4318 kB] Get: 119 http://deb.debian.org/debian trixie/main i386 libbcpg-java all 1.77-1 [428 kB] Get: 120 http://deb.debian.org/debian trixie/main i386 libbsh-java all 2.0b4-20 [291 kB] Get: 121 http://deb.debian.org/debian trixie/main i386 libdd-plist-java all 1.20-1.1 [72.6 kB] Get: 122 http://deb.debian.org/debian trixie/main i386 libjaxen-java all 1.1.6-5 [214 kB] Get: 123 http://deb.debian.org/debian trixie/main i386 libdom4j-java all 2.1.4-1 [312 kB] Get: 124 http://deb.debian.org/debian trixie/main i386 libcommons-lang3-java all 3.17.0-1 [641 kB] Get: 125 http://deb.debian.org/debian trixie/main i386 libbcel-java all 6.10.0-1 [674 kB] Get: 126 http://deb.debian.org/debian trixie/main i386 libjformatstring-java all 0.10~20131207-3 [34.8 kB] Get: 127 http://deb.debian.org/debian trixie/main i386 libfindbugs-java all 3.1.0~preview2-4 [3535 kB] Get: 128 http://deb.debian.org/debian trixie/main i386 libaopalliance-java all 20070526-7 [8572 B] Get: 129 http://deb.debian.org/debian trixie/main i386 libguice-java all 5.1.0-1 [932 kB] Get: 130 http://deb.debian.org/debian trixie/main i386 libjatl-java all 0.2.3-2 [30.1 kB] Get: 131 http://deb.debian.org/debian trixie/main i386 libjcifs-java all 1.3.19+dfsg-1 [414 kB] Get: 132 http://deb.debian.org/debian trixie/main i386 libjavaewah-java all 1.2.3-1 [159 kB] Get: 133 http://deb.debian.org/debian trixie/main i386 libel-api-java all 3.0.0-3 [64.9 kB] Get: 134 http://deb.debian.org/debian trixie/main i386 libwebsocket-api-java all 1.1-2 [40.1 kB] Get: 135 http://deb.debian.org/debian trixie/main i386 libjetty9-java all 9.4.56-1 [2964 kB] Get: 136 http://deb.debian.org/debian trixie/main i386 libjgit-java all 6.7.0-2 [3152 kB] Get: 137 http://deb.debian.org/debian trixie/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 138 http://deb.debian.org/debian trixie/main i386 libplexus-utils2-java all 3.4.2-1 [258 kB] Get: 139 http://deb.debian.org/debian trixie/main i386 libwagon-provider-api-java all 3.5.3-1 [48.2 kB] Get: 140 http://deb.debian.org/debian trixie/main i386 libmaven-resolver-java all 1.9.22-1 [729 kB] Get: 141 http://deb.debian.org/debian trixie/main i386 libgeronimo-annotation-1.3-spec-java all 1.3-1 [11.1 kB] Get: 142 http://deb.debian.org/debian trixie/main i386 libmaven-parent-java all 43-2 [6252 B] Get: 143 http://deb.debian.org/debian trixie/main i386 libmaven-shared-utils-java all 3.4.2-1 [137 kB] Get: 144 http://deb.debian.org/debian trixie/main i386 libplexus-cipher-java all 2.0-1 [14.9 kB] Get: 145 http://deb.debian.org/debian trixie/main i386 libplexus-classworlds-java all 2.7.0-1 [50.6 kB] Get: 146 http://deb.debian.org/debian trixie/main i386 libplexus-component-annotations-java all 2.1.1-1 [7660 B] Get: 147 http://deb.debian.org/debian trixie/main i386 libplexus-interpolation-java all 1.27-1 [76.8 kB] Get: 148 http://deb.debian.org/debian trixie/main i386 libplexus-sec-dispatcher-java all 2.0-3 [28.3 kB] Get: 149 http://deb.debian.org/debian trixie/main i386 libgeronimo-interceptor-3.0-spec-java all 1.0.1-5 [8444 B] Get: 150 http://deb.debian.org/debian trixie/main i386 libcdi-api-java all 1.2-4 [55.3 kB] Get: 151 http://deb.debian.org/debian trixie/main i386 libsisu-inject-java all 0.3.5-1 [352 kB] Get: 152 http://deb.debian.org/debian trixie/main i386 libsisu-plexus-java all 0.3.5-1 [183 kB] Get: 153 http://deb.debian.org/debian trixie/main i386 libmaven3-core-java all 3.9.9-1 [1661 kB] Get: 154 http://deb.debian.org/debian trixie/main i386 libplexus-container-default-java all 2.1.1-1 [193 kB] Get: 155 http://deb.debian.org/debian trixie/main i386 libpolyglot-maven-java all 0.8~tobrien+git20120905-10 [74.9 kB] Get: 156 http://deb.debian.org/debian trixie/main i386 librhino-java all 1.7.15-1 [1382 kB] Get: 157 http://deb.debian.org/debian trixie/main i386 libsimple-http-java all 4.1.21-1.1 [211 kB] Get: 158 http://deb.debian.org/debian trixie/main i386 libwagon-file-java all 3.5.3-1 [8388 B] Get: 159 http://deb.debian.org/debian trixie/main i386 libjsoup-java all 1.15.3-1 [431 kB] Get: 160 http://deb.debian.org/debian trixie/main i386 libwagon-http-java all 3.5.3-1 [49.5 kB] Get: 161 http://deb.debian.org/debian trixie/main i386 libjcommander-java all 1.71-4 [73.0 kB] Get: 162 http://deb.debian.org/debian trixie/main i386 testng all 6.9.12-4 [795 kB] Get: 163 http://deb.debian.org/debian trixie/main i386 libgradle-plugins-java all 4.4.1-22 [5245 kB] Get: 164 http://deb.debian.org/debian trixie/main i386 gradle all 4.4.1-22 [400 kB] Get: 165 http://deb.debian.org/debian trixie/main i386 maven-repo-helper all 1.11 [142 kB] Get: 166 http://deb.debian.org/debian trixie/main i386 gradle-debian-helper all 2.4 [24.5 kB] Get: 167 http://deb.debian.org/debian trixie/main i386 libfml0 i386 0.1+git20221215.85f159e-1 [89.1 kB] Get: 168 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Get: 169 http://deb.debian.org/debian trixie/main i386 libfml-dev i386 0.1+git20221215.85f159e-1 [101 kB] Fetched 239 MB in 4s (60.9 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19795 files and directories currently installed.) Preparing to unpack .../000-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../001-openssl_3.4.1-1_i386.deb ... Unpacking openssl (3.4.1-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../002-ca-certificates_20241223_all.deb ... Unpacking ca-certificates (20241223) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../003-libmagic-mgc_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../004-libmagic1t64_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../005-file_1%3a5.45-3+b1_i386.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../006-gettext-base_0.23.1-1_i386.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../007-libuchardet0_0.0.8-1+b2_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. 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Unpacking liblcms2-2:i386 (2.16-2) ... Selecting previously unselected package libjpeg62-turbo:i386. Preparing to unpack .../015-libjpeg62-turbo_1%3a2.1.5-3+b1_i386.deb ... Unpacking libjpeg62-turbo:i386 (1:2.1.5-3+b1) ... Selecting previously unselected package libnspr4:i386. Preparing to unpack .../016-libnspr4_2%3a4.36-1_i386.deb ... Unpacking libnspr4:i386 (2:4.36-1) ... Selecting previously unselected package libnss3:i386. Preparing to unpack .../017-libnss3_2%3a3.108-1_i386.deb ... Unpacking libnss3:i386 (2:3.108-1) ... Selecting previously unselected package libpcsclite1:i386. Preparing to unpack .../018-libpcsclite1_2.3.1-1_i386.deb ... Unpacking libpcsclite1:i386 (2.3.1-1) ... Selecting previously unselected package openjdk-21-jre-headless:i386. Preparing to unpack .../019-openjdk-21-jre-headless_21.0.6+7-1_i386.deb ... Unpacking openjdk-21-jre-headless:i386 (21.0.6+7-1) ... Selecting previously unselected package default-jre-headless. Preparing to unpack .../020-default-jre-headless_2%3a1.21-76_i386.deb ... Unpacking default-jre-headless (2:1.21-76) ... Selecting previously unselected package ant. Preparing to unpack .../021-ant_1.10.15-1_all.deb ... Unpacking ant (1.10.15-1) ... Selecting previously unselected package ant-optional. Preparing to unpack .../022-ant-optional_1.10.15-1_all.deb ... Unpacking ant-optional (1.10.15-1) ... Selecting previously unselected package libantlr-java. Preparing to unpack .../023-libantlr-java_2.7.7+dfsg-14_all.deb ... Unpacking libantlr-java (2.7.7+dfsg-14) ... Selecting previously unselected package antlr. Preparing to unpack .../024-antlr_2.7.7+dfsg-14_all.deb ... Unpacking antlr (2.7.7+dfsg-14) ... Selecting previously unselected package m4. Preparing to unpack .../025-m4_1.4.19-5_i386.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../026-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... 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Setting up liblcms2-2:i386 (2.16-2) ... Setting up libjcommander-java (1.71-4) ... Setting up libslf4j-java (1.7.32-1) ... Setting up libplexus-utils2-java (3.4.2-1) ... Setting up libplexus-classworlds-java (2.7.0-1) ... Setting up libqdox-java (1.12.1-4) ... Setting up libicu72:i386 (72.1-6) ... Setting up libjsr305-java (0.1~+svn49-12) ... Setting up libsimple-http-java (4.1.21-1.1) ... Setting up bsdextrautils (2.40.4-3) ... Setting up java-common (0.76) ... Setting up libjcip-annotations-java (20060626-6) ... Setting up libobjenesis-java (3.4-1) ... Setting up libaopalliance-java (20070526-7) ... Setting up libcommons-cli-java (1.6.0-1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up liblogback-java (1:1.2.11-6) ... Setting up libminlog-java (1.3.1-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libgoogle-gson-java (2.10.1-1) ... Setting up unzip (6.0-28) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libmagic1t64:i386 (1:5.45-3+b1) ... Setting up libasm-java (9.7.1-1) ... Setting up libdd-plist-java (1.20-1.1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libel-api-java (3.0.0-3) ... Setting up libplexus-component-annotations-java (2.1.1-1) ... Setting up file (1:5.45-3+b1) ... Setting up libpolyglot-maven-java (0.8~tobrien+git20120905-10) ... Setting up libfelix-gogo-runtime-java (0.16.2-2) ... Setting up libjzlib-java (1.1.3-3) ... Setting up libfml0:i386 (0.1+git20221215.85f159e-1) ... Setting up libelf1t64:i386 (0.192-4) ... Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... Setting up libgeronimo-interceptor-3.0-spec-java (1.0.1-5) ... Setting up libcommons-collections3-java (3.2.2-3) ... Setting up libreflectasm-java (1.11.9+dfsg-4) ... Setting up librhino-java (1.7.15-1) ... Setting up autotools-dev (20220109.1) ... Setting up libbsf-java (1:2.4.0-8) ... Setting up libosgi-annotation-java (8.1.0-1) ... Setting up libjformatstring-java (0.10~20131207-3) ... Setting up libjavaewah-java (1.2.3-1) ... Setting up libjpeg62-turbo:i386 (1:2.1.5-3+b1) ... Setting up libjaxen-java (1.1.6-5) ... Setting up libnspr4:i386 (2:4.36-1) ... Setting up libeclipse-jdt-annotation-java (2.2.700+eclipse4.29-2) ... Setting up libjansi-java (2.4.1-2) ... Setting up libapache-pom-java (33-2) ... Setting up libxpp3-java (1.1.4c-4) ... Setting up libatinject-jsr330-api-java (1.0+ds1-6) ... Setting up libwebsocket-api-java (1.1-2) ... Setting up libplexus-interpolation-java (1.27-1) ... Setting up libunistring5:i386 (1.3-1) ... Setting up libxml-commons-resolver1.1-java (1.2-11) ... Setting up libkryo-java (2.20-8) ... Setting up libxz-java (1.9-1) ... Setting up autopoint (0.23.1-1) ... Setting up libjunixsocket-jni (2.6.1-1) ... Setting up libfelix-framework-java (4.6.1-3) ... Setting up libpcsclite1:i386 (2.3.1-1) ... Setting up libmongodb-java (3.6.3-2) ... Setting up libhamcrest-java (2.2-2) ... Setting up libbsh-java (2.0b4-20) ... Setting up libjsp-api-java (2.3.4-3) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libjarjar-java (1.4+svn142-12) ... Setting up libffi8:i386 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libjsoup-java (1.15.3-1) ... Setting up libuchardet0:i386 (0.0.8-1+b2) ... Setting up libxml-commons-external-java (1.4.01-6) ... Setting up libxbean-reflect-java (4.5-9) ... Setting up libservlet-api-java (4.0.1-2) ... Setting up libnative-platform-jni (0.14-6) ... Setting up libhttpcore-java (4.4.16-1) ... Setting up libbcpg-java (1.77-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libxerces2-java (2.12.2-1) ... Setting up libantlr-java (2.7.7+dfsg-14) ... Setting up libyaml-snake-java (1.33-2) ... Setting up openssl (3.4.1-1) ... Setting up libcdi-api-java (1.2-4) ... Setting up libhawtjni-runtime-java (1.18-1) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libjatl-java (0.2.3-2) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libdom4j-java (2.1.4-1) ... Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up libwagon-provider-api-java (3.5.3-1) ... Setting up libnative-platform-java (0.14-6) ... Setting up libosgi-core-java (8.0.0-2) ... Setting up libxstream-java (1.4.21-1) ... Setting up libnekohtml-java (1.9.22.noko2-0.1) ... Setting up gettext (0.23.1-1) ... Setting up libjetty9-java (9.4.56-1) ... Setting up libfml-dev:i386 (0.1+git20221215.85f159e-1) ... Setting up java-wrappers (0.5) ... Setting up libosgi-compendium-java (7.0.0-1) ... Setting up libtool (2.5.4-3) ... Setting up libmaven-parent-java (43-2) ... Setting up libcommons-parent-java (56-1) ... Setting up libcommons-logging-java (1.3.0-1) ... Setting up libsisu-inject-java (0.3.5-1) ... Setting up libnss3:i386 (2:3.108-1) ... Setting up libcommons-lang-java (2.6-10) ... Setting up libjunixsocket-java (2.6.1-1) ... Setting up libplexus-cipher-java (2.0-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libsisu-plexus-java (0.3.5-1) ... Setting up testng (6.9.12-4) ... Setting up libjna-jni (5.15.0-1) ... Setting up libcommons-lang3-java (3.17.0-1) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up libfelix-resolver-java (1.16.0-1) ... Setting up libjansi-native-java (1.8-2) ... Setting up groff-base (1.23.0-7) ... Setting up libjna-java (5.15.0-1) ... Setting up libjansi1-java (1.18-3.1) ... Setting up libplexus-sec-dispatcher-java (2.0-3) ... Setting up ca-certificates-java (20240118) ... No JRE found. Skipping Java certificates setup. Setting up libwagon-file-java (3.5.3-1) ... Setting up libcommons-codec-java (1.17.1-1) ... Setting up libjline2-java (2.14.6-5) ... Setting up openjdk-21-jre-headless:i386 (21.0.6+7-1) ... update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libcommons-io-java (2.18.0-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libmaven-resolver-java (1.9.22-1) ... Setting up libbcel-java (6.10.0-1) ... Setting up libhttpclient-java (4.5.14-1) ... Setting up liblightcouch-java (0.2.0-1) ... Setting up libwagon-http-java (3.5.3-1) ... Setting up libmaven-shared-utils-java (3.4.2-1) ... Setting up libfindbugs-java (3.1.0~preview2-4) ... Setting up libcommons-compress-java (1.27.1-2) ... Setting up liblog4j2-java (2.19.0-2) ... Setting up debhelper (13.24.1) ... Setting up libjsch-java (0.2.19-1) ... Setting up libjgit-java (6.7.0-2) ... Setting up liberror-prone-java (2.18.0-1) ... Setting up libguava-java (32.0.1-1) ... Setting up libplexus-container-default-java (2.1.1-1) ... Setting up libguice-java (5.1.0-1) ... Setting up libmaven3-core-java (3.9.9-1) ... Processing triggers for libc-bin (2.40-6) ... Processing triggers for ca-certificates-java (20240118) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:BJCA_Global_Root_CA1.pem Adding debian:BJCA_Global_Root_CA2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:CommScope_Public_Trust_ECC_Root-01.pem Adding debian:CommScope_Public_Trust_ECC_Root-02.pem Adding debian:CommScope_Public_Trust_RSA_Root-01.pem Adding debian:CommScope_Public_Trust_RSA_Root-02.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureSign_Root_CA12.pem Adding debian:SecureSign_Root_CA14.pem Adding debian:SecureSign_Root_CA15.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_CYBER_Root_CA.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustAsia_Global_Root_CA_G3.pem Adding debian:TrustAsia_Global_Root_CA_G4.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up antlr (2.7.7+dfsg-14) ... Setting up ivy (2.5.2-1) ... Setting up ant (1.10.15-1) ... Setting up junit4 (4.13.2-5) ... Setting up groovy (2.4.21-10) ... update-alternatives: using /usr/share/groovy/bin/groovy to provide /usr/bin/groovy (groovy) in auto mode update-alternatives: using /usr/share/groovy/bin/groovyc to provide /usr/bin/groovyc (groovyc) in auto mode update-alternatives: using /usr/share/groovy/bin/grape to provide /usr/bin/grape (grape) in auto mode update-alternatives: using /usr/share/groovy/bin/startGroovy to provide /usr/bin/startGroovy (startGroovy) in auto mode update-alternatives: using /usr/share/groovy/bin/groovysh to provide /usr/bin/groovysh (groovysh) in auto mode update-alternatives: using /usr/share/groovy/bin/java2groovy to provide /usr/bin/java2groovy (java2groovy) in auto mode update-alternatives: using /usr/share/groovy/bin/groovyConsole to provide /usr/bin/groovyConsole (groovyConsole) in auto mode update-alternatives: using /usr/share/groovy/bin/groovydoc to provide /usr/bin/groovydoc (groovydoc) in auto mode Setting up openjdk-21-jdk-headless:i386 (21.0.6+7-1) ... update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jwebserver to provide /usr/bin/jwebserver (jwebserver) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up default-jre-headless (2:1.21-76) ... Setting up maven-repo-helper (1.11) ... Setting up ant-optional (1.10.15-1) ... Setting up bnd (5.0.1-5) ... Setting up default-jdk-headless (2:1.21-76) ... Setting up libgradle-core-java (4.4.1-22) ... Setting up libgradle-plugins-java (4.4.1-22) ... Setting up gradle (4.4.1-22) ... Setting up gradle-debian-helper (2.4) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20240118) ... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gatk-fermilite_1.2.1+dfsg-2_source.changes dpkg-buildpackage: info: source package gatk-fermilite dpkg-buildpackage: info: source version 1.2.1+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Pierre Gruet dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --with maven_repo_helper debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg' dh_auto_clean sh -c "find . -wholename .*build/tmp | xargs echo | sed -e 's^build/tmp^build^g' | xargs rm -Rf" sh -c "find . -wholename .*build/debian | xargs echo | sed -e 's^build/tmp^build^g' | xargs rm -Rf" rm -Rf /build/reproducible-path/gatk-fermilite-1.2.1\+dfsg/.gradle /build/reproducible-path/gatk-fermilite-1.2.1\+dfsg/buildSrc/.gradle .m2 if [ -e src/main/c/org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.c.save ]; then \ mv src/main/c/org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.c.save src/main/c/org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.c; \ fi # Cleaning the C part cd src/main/c/ && make clean make[2]: Entering directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/c' rm -rf fermi-lite *.o *.so make[2]: Leaving directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/c' # Cleaning the custom pom rm debian/pom.xml rm: cannot remove 'debian/pom.xml': No such file or directory make[1]: [debian/rules:20: override_dh_auto_clean] Error 1 (ignored) make[1]: Leaving directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg' dh_clean debian/rules binary dh binary --with maven_repo_helper dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg' # Putting the version of fermi-lite in the JNI file so that is can output version information. cp src/main/c/org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.c src/main/c/org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.c.save fmlVersion=$(dpkg -s libfml-dev | grep "Version" | sed 's/Version: \(.*\)-.*/\1/') && \ sed -i "s/FML_COMMIT/\"$fmlVersion\"/" src/main/c/org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.c # Putting the version number in the custom pom. sed 's/\(VERSION_PACKAGE\)/\11.2.1+dfsg/; s/VERSION_PACKAGE\(.*\)+dfsg[0-9]*/\1/' debian/pom.xml.in > debian/pom.xml dh_auto_configure make[1]: Leaving directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg' dh_auto_build mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gatk-fermilite -Dfile.encoding=UTF-8 --parallel --max-workers=11 jar openjdk version "21.0.6" 2025-01-21 OpenJDK Runtime Environment (build 21.0.6+7-Debian-1) OpenJDK Server VM (build 21.0.6+7-Debian-1, mixed mode, sharing) Initialized native services in: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/native To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-i386/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' An attempt to start the daemon took 1.949 secs. The client will now receive all logging from the daemon (pid: 59882). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-59882.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 11 worker leases. Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@e2154b Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@e2154b Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@62dacc Starting Build Compiling initialization script '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@b7e3ba Compiling initialization script '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Compiling settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle' using SubsetScriptTransformer. Compiling settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle' using BuildScriptTransformer. Settings evaluated using settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle'. Projects loaded. Root project using build file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build.gradle'. Included projects: [root project 'gatk-fermilite'] Keep-alive timer started Adding Debian repository to project 'gatk-fermilite' Parallel execution is an incubating feature. Evaluating root project 'gatk-fermilite' using build file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build.gradle'. Compiling build file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build.gradle' using SubsetScriptTransformer. Compiling build file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build.gradle' using BuildScriptTransformer. Adding Maven pom generation to project 'gatk-fermilite' Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@14bb7c2 Tasks to be executed: [task ':compileJava', task ':buildFermiLib', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@62dacc Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@f8e847 Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@13d6935 :compileJava (Thread[#54,Task worker for ':' Thread 5,5,main]) started. :compileJava Putting task artifact state for task ':compileJava' into context took 0.016 secs. Up-to-date check for task ':compileJava' took 0.034 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. Compiling with JDK Java compiler API. :compileJava (Thread[#54,Task worker for ':' Thread 5,5,main]) completed. Took 2.351 secs. :buildFermiLib (Thread[#54,Task worker for ':' Thread 5,5,main]) started. :buildFermiLib Putting task artifact state for task ':buildFermiLib' into context took 0.0 secs. Up-to-date check for task ':buildFermiLib' took 0.007 secs. It is not up-to-date because: No history is available. using /usr/lib/jvm/java-21-openjdk-i386 -> /usr/lib/jvm/java-21-openjdk-i386 as JAVA_HOME Starting process 'command 'make''. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/c Command: make Successfully started process 'command 'make'' make[1]: Entering directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/c' gcc -g -O2 -Wall -fPIC -I/usr/lib/jvm/java-21-openjdk-i386/include -I/usr/lib/jvm/java-21-openjdk-i386/include/linux -Wdate-time -D_FORTIFY_SOURCE=2 -c -o org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.o org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.c gcc -dynamiclib -shared -o libfml.so org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.o /usr/lib/i386-linux-gnu/libfml.so -lm -lz -lpthread make[1]: Leaving directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/c' :buildFermiLib (Thread[#54,Task worker for ':' Thread 5,5,main]) completed. Took 0.476 secs. :processResources (Thread[#54,Task worker for ':' Thread 5,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/resources', not found Skipping task ':processResources' as it has no source files and no previous output files. :processResources NO-SOURCE :processResources (Thread[#54,Task worker for ':' Thread 5,5,main]) completed. Took 0.023 secs. :classes (Thread[#54,Task worker for ':' Thread 5,5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes (Thread[#54,Task worker for ':' Thread 5,5,main]) completed. Took 0.006 secs. :debianMavenPom (Thread[#54,Task worker for ':' Thread 5,5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. Up-to-date check for task ':debianMavenPom' took 0.001 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/debian/gatk-fermilite.pom :debianMavenPom (Thread[#54,Task worker for ':' Thread 5,5,main]) completed. Took 0.163 secs. :jar (Thread[#54,Task worker for ':' Thread 5,5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. Up-to-date check for task ':jar' took 0.016 secs. It is not up-to-date because: No history is available. :jar (Thread[#54,Task worker for ':' Thread 5,5,main]) completed. Took 0.129 secs. BUILD SUCCESSFUL in 14s 4 actionable tasks: 4 executed debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg' # The shared lib should be looked for in its build directory. LD_LIBRARY_PATH="$LD_LIBRARY_PATH:$(readlink -f src/main/c)" dh_auto_test mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gatk-fermilite -Dfile.encoding=UTF-8 --parallel --max-workers=11 test openjdk version "21.0.6" 2025-01-21 OpenJDK Runtime Environment (build 21.0.6+7-Debian-1) OpenJDK Server VM (build 21.0.6+7-Debian-1, mixed mode, sharing) Initialized native services in: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/native To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-i386/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' An attempt to start the daemon took 1.546 secs. The client will now receive all logging from the daemon (pid: 60591). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-60591.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 11 worker leases. Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@f67065 Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@f67065 Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1b809d6 Starting Build Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@1ae08c2 Settings evaluated using settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle'. Projects loaded. Root project using build file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build.gradle'. Included projects: [root project 'gatk-fermilite'] Keep-alive timer started Adding Debian repository to project 'gatk-fermilite' Parallel execution is an incubating feature. Evaluating root project 'gatk-fermilite' using build file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build.gradle'. Adding Maven pom generation to project 'gatk-fermilite' Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@2a208d Tasks to be executed: [task ':compileJava', task ':buildFermiLib', task ':processResources', task ':classes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test'] Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1b809d6 Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@11b70bd Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@13f53f3 :compileJava (Thread[#53,Task worker for ':' Thread 4,5,main]) started. :compileJava Putting task artifact state for task ':compileJava' into context took 0.006 secs. Skipping task ':compileJava' as it is up-to-date (took 0.046 secs). :compileJava UP-TO-DATE :compileJava (Thread[#53,Task worker for ':' Thread 4,5,main]) completed. Took 0.099 secs. :buildFermiLib (Thread[#53,Task worker for ':' Thread 4,5,main]) started. :buildFermiLib Putting task artifact state for task ':buildFermiLib' into context took 0.0 secs. Skipping task ':buildFermiLib' as it is up-to-date (took 0.004 secs). :buildFermiLib UP-TO-DATE :buildFermiLib (Thread[#53,Task worker for ':' Thread 4,5,main]) completed. Took 0.01 secs. :processResources (Thread[#53,Task worker for ':' Thread 4,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/resources', not found Skipping task ':processResources' as it has no source files and no previous output files. :processResources NO-SOURCE :processResources (Thread[#53,Task worker for ':' Thread 4,5,main]) completed. Took 0.003 secs. :classes (Thread[#53,Task worker for ':' Thread 4,5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes UP-TO-DATE :classes (Thread[#53,Task worker for ':' Thread 4,5,main]) completed. Took 0.001 secs. :compileTestJava (Thread[#53,Task worker for ':' Thread 4,5,main]) started. :compileTestJava Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@14bf92f Loading the Maven rules... Replacing org.testng:testng:jar:6.9.6 -> org.testng:testng:jar:debian Passing through org.beanshell:bsh:jar:debian Passing through com.beust:jcommander:jar:debian Up-to-date check for task ':compileTestJava' took 0.825 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileTestJava'. Compiling with JDK Java compiler API. :compileTestJava (Thread[#53,Task worker for ':' Thread 4,5,main]) completed. Took 2.68 secs. :processTestResources (Thread[#53,Task worker for ':' Thread 4,5,main]) started. :processTestResources Putting task artifact state for task ':processTestResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/test/resources', not found Skipping task ':processTestResources' as it has no source files and no previous output files. :processTestResources NO-SOURCE :processTestResources (Thread[#53,Task worker for ':' Thread 4,5,main]) completed. Took 0.003 secs. :testClasses (Thread[#53,Task worker for ':' Thread 4,5,main]) started. :testClasses Skipping task ':testClasses' as it has no actions. :testClasses (Thread[#53,Task worker for ':' Thread 4,5,main]) completed. Took 0.001 secs. :test (Thread[#53,Task worker for ':' Thread 4,5,main]) started. :test Putting task artifact state for task ':test' into context took 0.0 secs. Up-to-date check for task ':test' took 0.142 secs. It is not up-to-date because: No history is available. Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg Command: /usr/lib/jvm/java-21-openjdk-i386/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath5028028391587859174txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' Successfully started process 'Gradle Test Executor 1' Gradle Test Executor 1 started executing tests. Gradle Test Executor 1 finished executing tests. Results: SUCCESS (2 tests, 2 successes, 0 failures, 0 skipped) Finished generating test XML results (0.015 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/test-results/test Generating HTML test report... Finished generating test html results (0.034 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/reports/tests/test :test (Thread[#53,Task worker for ':' Thread 4,5,main]) completed. Took 2.151 secs. BUILD SUCCESSFUL in 13s 4 actionable tasks: 2 executed, 2 up-to-date make[1]: Leaving directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install dh_install mh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libgatk-fermilite-java: substitution variable ${java:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'libgatk-fermilite-java' in '../libgatk-fermilite-java_1.2.1+dfsg-2_all.deb'. dpkg-deb: building package 'libgatk-fermilite-jni-dbgsym' in '../libgatk-fermilite-jni-dbgsym_1.2.1+dfsg-2_i386.deb'. dpkg-deb: building package 'libgatk-fermilite-jni' in '../libgatk-fermilite-jni_1.2.1+dfsg-2_i386.deb'. dpkg-genbuildinfo --build=binary -O../gatk-fermilite_1.2.1+dfsg-2_i386.buildinfo dpkg-genchanges --build=binary -O../gatk-fermilite_1.2.1+dfsg-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/52976 and its subdirectories I: Current time: Fri Feb 21 04:28:51 -12 2025 I: pbuilder-time-stamp: 1740155331 Fri Feb 21 16:28:52 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net. Fri Feb 21 16:28:52 UTC 2025 I: Preparing to do remote build '2' on ionos16-i386.debian.net. Fri Feb 21 16:28:52 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos16-i386.debian.net is marked as down. Fri Feb 21 16:28:52 UTC 2025 - checking via ssh if ionos16-i386.debian.net is up. removed '/tmp/read-only-fs-test-dVjcWz' ==================================================================================== Thu Mar 26 22:51:53 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos16-i386, called using "2 gatk-fermilite trixie /srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L 1.2.1+dfsg-2" as arguments. Thu Mar 26 22:51:53 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-uTbqtmOz" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Mar 26 22:51:53 UTC 2026 I: Downloading source for trixie/gatk-fermilite=1.2.1+dfsg-2 Reading package lists... NOTICE: 'gatk-fermilite' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/gatk-fermilite.git Please use: git clone https://salsa.debian.org/med-team/gatk-fermilite.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 21.8 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main gatk-fermilite 1.2.1+dfsg-2 (dsc) [2209 B] Get:2 http://deb.debian.org/debian trixie/main gatk-fermilite 1.2.1+dfsg-2 (tar) [12.1 kB] Get:3 http://deb.debian.org/debian trixie/main gatk-fermilite 1.2.1+dfsg-2 (diff) [7468 B] Fetched 21.8 kB in 0s (902 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'gatk-fermilite' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/gatk-fermilite.git Please use: git clone https://salsa.debian.org/med-team/gatk-fermilite.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 21.8 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main gatk-fermilite 1.2.1+dfsg-2 (dsc) [2209 B] Get:2 http://deb.debian.org/debian trixie/main gatk-fermilite 1.2.1+dfsg-2 (tar) [12.1 kB] Get:3 http://deb.debian.org/debian trixie/main gatk-fermilite 1.2.1+dfsg-2 (diff) [7468 B] Fetched 21.8 kB in 0s (902 kB/s) Download complete and in download only mode ============================================================================= Re-Building gatk-fermilite in trixie on i386 on ionos16-i386 now. Date: Thu Mar 26 23:51:53 CET 2026 Date UTC: Thu Mar 26 22:51:53 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L/pbuilderrc_lOhJ + case ${ARCH} in + let NUM_CPU-=3 + case $ARCH in + locale=de_CH + language=de + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' gatk-fermilite = debian-installer -o gatk-fermilite = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' gatk-fermilite = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L/pbuilderrc_lOhJ --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L/b2 --logfile b2/build.log gatk-fermilite_1.2.1+dfsg-2.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Mar 27 12:51:53 +14 2026 I: pbuilder-time-stamp: 1774565513 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [gatk-fermilite_1.2.1+dfsg-2.dsc] I: copying [./gatk-fermilite_1.2.1+dfsg.orig.tar.xz] I: copying [./gatk-fermilite_1.2.1+dfsg-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./gatk-fermilite_1.2.1+dfsg-2.dsc: unsupported subcommand dpkg-source: info: extracting gatk-fermilite in gatk-fermilite-1.2.1+dfsg dpkg-source: info: unpacking gatk-fermilite_1.2.1+dfsg.orig.tar.xz dpkg-source: info: unpacking gatk-fermilite_1.2.1+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying build.patch dpkg-source: info: applying use_Debian_fml.patch dpkg-source: info: applying rename_bseq1_t.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/73755/tmp/hooks/D01_modify_environment starting debug: Running on ionos16-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Mar 26 22:52 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/73755/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/73755/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=dd2e2ac99d73424b8f2cfdce133d40d2 LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=73755 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L/pbuilderrc_lOhJ --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L/b2 --logfile b2/build.log gatk-fermilite_1.2.1+dfsg-2.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/73755/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), default-jdk-headless, gradle-debian-helper, libfml-dev, maven-repo-helper, testng dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19795 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on default-jdk-headless; however: Package default-jdk-headless is not installed. pbuilder-satisfydepends-dummy depends on gradle-debian-helper; however: Package gradle-debian-helper is not installed. pbuilder-satisfydepends-dummy depends on libfml-dev; however: Package libfml-dev is not installed. pbuilder-satisfydepends-dummy depends on maven-repo-helper; however: Package maven-repo-helper is not installed. pbuilder-satisfydepends-dummy depends on testng; however: Package testng is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: ant{a} ant-optional{a} antlr{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bnd{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} debhelper{a} default-jdk-headless{a} default-jre-headless{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gradle{a} gradle-debian-helper{a} groff-base{a} groovy{a} intltool-debian{a} ivy{a} java-common{a} java-wrappers{a} junit4{a} libantlr-java{a} libaopalliance-java{a} libapache-pom-java{a} libarchive-zip-perl{a} libasm-java{a} libatinject-jsr330-api-java{a} libbcel-java{a} libbcpg-java{a} libbcprov-java{a} libbsf-java{a} libbsh-java{a} libcdi-api-java{a} libcommons-cli-java{a} libcommons-codec-java{a} libcommons-collections3-java{a} libcommons-compress-java{a} libcommons-io-java{a} libcommons-lang-java{a} libcommons-lang3-java{a} libcommons-logging-java{a} libcommons-parent-java{a} libdd-plist-java{a} libdebhelper-perl{a} libdom4j-java{a} libeclipse-jdt-annotation-java{a} libel-api-java{a} libelf1t64{a} liberror-prone-java{a} libfelix-framework-java{a} libfelix-gogo-runtime-java{a} libfelix-resolver-java{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfindbugs-java{a} libfml-dev{a} libfml0{a} libgeronimo-annotation-1.3-spec-java{a} libgeronimo-interceptor-3.0-spec-java{a} libgoogle-gson-java{a} libgradle-core-java{a} libgradle-plugins-java{a} libguava-java{a} libguice-java{a} libhamcrest-java{a} libhawtjni-runtime-java{a} libhttpclient-java{a} libhttpcore-java{a} libicu72{a} libjansi-java{a} libjansi-native-java{a} libjansi1-java{a} libjarjar-java{a} libjatl-java{a} libjavaewah-java{a} libjaxen-java{a} libjcifs-java{a} libjcip-annotations-java{a} libjcommander-java{a} libjetty9-java{a} libjformatstring-java{a} libjgit-java{a} libjline2-java{a} libjna-java{a} libjna-jni{a} libjpeg62-turbo{a} libjs-jquery{a} libjsch-java{a} libjsoup-java{a} libjsp-api-java{a} libjsr305-java{a} libjunixsocket-java{a} libjunixsocket-jni{a} libjzlib-java{a} libkryo-java{a} liblcms2-2{a} liblightcouch-java{a} liblog4j2-java{a} liblogback-java{a} libmagic-mgc{a} libmagic1t64{a} libmaven-parent-java{a} libmaven-resolver-java{a} libmaven-shared-utils-java{a} libmaven3-core-java{a} libminlog-java{a} libmongodb-java{a} libnative-platform-java{a} libnative-platform-jni{a} libnekohtml-java{a} libnspr4{a} libnss3{a} libobjenesis-java{a} libosgi-annotation-java{a} libosgi-compendium-java{a} libosgi-core-java{a} libpcsclite1{a} libpipeline1{a} libplexus-cipher-java{a} libplexus-classworlds-java{a} libplexus-component-annotations-java{a} libplexus-container-default-java{a} libplexus-interpolation-java{a} libplexus-sec-dispatcher-java{a} libplexus-utils2-java{a} libpolyglot-maven-java{a} libqdox-java{a} libreflectasm-java{a} librhino-java{a} libservlet-api-java{a} libsimple-http-java{a} libsisu-inject-java{a} libsisu-plexus-java{a} libslf4j-java{a} libtool{a} libuchardet0{a} libunistring5{a} libwagon-file-java{a} libwagon-http-java{a} libwagon-provider-api-java{a} libwebsocket-api-java{a} libxbean-reflect-java{a} libxerces2-java{a} libxml-commons-external-java{a} libxml-commons-resolver1.1-java{a} libxml2{a} libxpp3-java{a} libxstream-java{a} libxz-java{a} libyaml-snake-java{a} m4{a} man-db{a} maven-repo-helper{a} openjdk-21-jdk-headless{a} openjdk-21-jre-headless{a} openssl{a} po-debconf{a} sensible-utils{a} testng{a} unzip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libasound2t64 libbindex-java libcups2t64 libfontconfig1 libfreetype6 libgpars-groovy-java libharfbuzz0b libltdl-dev libmail-sendmail-perl libreflectasm-java-doc lynx wget 0 packages upgraded, 169 newly installed, 0 to remove and 0 not upgraded. Need to get 239 MB of archives. After unpacking 514 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 openssl i386 3.4.1-1 [1432 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 ca-certificates all 20241223 [164 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.23.1-1 [245 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-7 [1199 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.4-3 [96.2 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 ca-certificates-java all 20240118 [11.6 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 java-common all 0.76 [6776 B] Get: 15 http://deb.debian.org/debian trixie/main i386 liblcms2-2 i386 2.16-2 [171 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libjpeg62-turbo i386 1:2.1.5-3+b1 [171 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 libnspr4 i386 2:4.36-1 [119 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libnss3 i386 2:3.108-1 [1505 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libpcsclite1 i386 2.3.1-1 [57.3 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 openjdk-21-jre-headless i386 21.0.6+7-1 [43.2 MB] Get: 21 http://deb.debian.org/debian trixie/main i386 default-jre-headless i386 2:1.21-76 [3192 B] Get: 22 http://deb.debian.org/debian trixie/main i386 ant all 1.10.15-1 [2163 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 ant-optional all 1.10.15-1 [456 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libantlr-java all 2.7.7+dfsg-14 [458 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 antlr all 2.7.7+dfsg-14 [8376 B] Get: 26 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-5 [301 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 automake all 1:1.17-3 [862 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 autopoint all 0.23.1-1 [770 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 unzip i386 6.0-28 [166 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 java-wrappers all 0.5 [8848 B] Get: 33 http://deb.debian.org/debian trixie/main i386 libhamcrest-java all 2.2-2 [121 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 junit4 all 4.13.2-5 [350 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 libfelix-framework-java all 4.6.1-3 [577 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 libfelix-gogo-runtime-java all 0.16.2-2 [117 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 libosgi-annotation-java all 8.1.0-1 [9436 B] Get: 38 http://deb.debian.org/debian trixie/main i386 libosgi-core-java all 8.0.0-2 [182 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 libfelix-resolver-java all 1.16.0-1 [180 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 libhawtjni-runtime-java all 1.18-1 [36.3 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libjansi-native-java all 1.8-2 [26.0 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 libjansi1-java all 1.18-3.1 [66.6 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 libjline2-java all 2.14.6-5 [151 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 libosgi-compendium-java all 7.0.0-1 [477 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 libslf4j-java all 1.7.32-1 [144 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 libxz-java all 1.9-1 [143 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 libyaml-snake-java all 1.33-2 [321 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 bnd all 5.0.1-5 [10.1 MB] Get: 49 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 libtool all 2.5.4-3 [539 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 55 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 libunistring5 i386 1.3-1 [458 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-6 [9582 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 gettext i386 0.23.1-1 [1714 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 debhelper all 13.24.1 [920 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 openjdk-21-jdk-headless i386 21.0.6+7-1 [85.3 MB] Get: 65 http://deb.debian.org/debian trixie/main i386 default-jdk-headless i386 2:1.21-76 [1124 B] Get: 66 http://deb.debian.org/debian trixie/main i386 ivy all 2.5.2-1 [1295 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 libasm-java all 9.7.1-1 [391 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 libbsf-java all 1:2.4.0-8 [76.3 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 libcommons-cli-java all 1.6.0-1 [60.4 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 libapache-pom-java all 33-2 [5852 B] Get: 71 http://deb.debian.org/debian trixie/main i386 libcommons-parent-java all 56-1 [10.8 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 libcommons-logging-java all 1.3.0-1 [68.6 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 libjansi-java all 2.4.1-2 [100 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 libjsp-api-java all 2.3.4-3 [53.7 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 libqdox-java all 1.12.1-4 [173 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 libservlet-api-java all 4.0.1-2 [81.0 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 libxpp3-java all 1.1.4c-4 [294 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 libxstream-java all 1.4.21-1 [567 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 groovy all 2.4.21-10 [12.8 MB] Get: 80 http://deb.debian.org/debian trixie/main i386 libatinject-jsr330-api-java all 1.0+ds1-6 [5112 B] Get: 81 http://deb.debian.org/debian trixie/main i386 libcommons-collections3-java all 3.2.2-3 [530 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 libcommons-codec-java all 1.17.1-1 [303 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 libcommons-io-java all 2.18.0-1 [509 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 libcommons-compress-java all 1.27.1-2 [641 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 libcommons-lang-java all 2.6-10 [273 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 liberror-prone-java all 2.18.0-1 [22.5 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 libjsr305-java all 0.1~+svn49-12 [26.6 kB] Get: 88 http://deb.debian.org/debian trixie/main i386 libguava-java all 32.0.1-1 [2708 kB] Get: 89 http://deb.debian.org/debian trixie/main i386 libhttpcore-java all 4.4.16-1 [636 kB] Get: 90 http://deb.debian.org/debian trixie/main i386 libhttpclient-java all 4.5.14-1 [1247 kB] Get: 91 http://deb.debian.org/debian trixie/main i386 libjarjar-java all 1.4+svn142-12 [205 kB] Get: 92 http://deb.debian.org/debian trixie/main i386 libjcip-annotations-java all 20060626-6 [11.8 kB] Get: 93 http://deb.debian.org/debian trixie/main i386 libffi8 i386 3.4.7-1 [21.4 kB] Get: 94 http://deb.debian.org/debian trixie/main i386 libjna-jni i386 5.15.0-1 [64.6 kB] Get: 95 http://deb.debian.org/debian trixie/main i386 libjna-java all 5.15.0-1 [238 kB] Get: 96 http://deb.debian.org/debian trixie/main i386 libbcprov-java all 1.77-1 [5300 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 libjunixsocket-jni i386 2.6.1-1 [20.4 kB] Get: 98 http://deb.debian.org/debian trixie/main i386 libeclipse-jdt-annotation-java all 2.2.700+eclipse4.29-2 [25.5 kB] Get: 99 http://deb.debian.org/debian trixie/main i386 libjunixsocket-java all 2.6.1-1 [264 kB] Get: 100 http://deb.debian.org/debian trixie/main i386 libgoogle-gson-java all 2.10.1-1 [262 kB] Get: 101 http://deb.debian.org/debian trixie/main i386 liblightcouch-java all 0.2.0-1 [75.0 kB] Get: 102 http://deb.debian.org/debian trixie/main i386 libmongodb-java all 3.6.3-2 [1901 kB] Get: 103 http://deb.debian.org/debian trixie/main i386 liblog4j2-java all 2.19.0-2 [2310 kB] Get: 104 http://deb.debian.org/debian trixie/main i386 libjzlib-java all 1.1.3-3 [79.4 kB] Get: 105 http://deb.debian.org/debian trixie/main i386 libjsch-java all 0.2.19-1 [513 kB] Get: 106 http://deb.debian.org/debian trixie/main i386 libminlog-java all 1.3.1-1 [7808 B] Get: 107 http://deb.debian.org/debian trixie/main i386 libobjenesis-java all 3.4-1 [41.1 kB] Get: 108 http://deb.debian.org/debian trixie/main i386 libreflectasm-java all 1.11.9+dfsg-4 [25.0 kB] Get: 109 http://deb.debian.org/debian trixie/main i386 libkryo-java all 2.20-8 [161 kB] Get: 110 http://deb.debian.org/debian trixie/main i386 liblogback-java all 1:1.2.11-6 [701 kB] Get: 111 http://deb.debian.org/debian trixie/main i386 libnative-platform-jni i386 0.14-6 [12.2 kB] Get: 112 http://deb.debian.org/debian trixie/main i386 libnative-platform-java all 0.14-6 [69.8 kB] Get: 113 http://deb.debian.org/debian trixie/main i386 libxml-commons-external-java all 1.4.01-6 [240 kB] Get: 114 http://deb.debian.org/debian trixie/main i386 libxml-commons-resolver1.1-java all 1.2-11 [98.3 kB] Get: 115 http://deb.debian.org/debian trixie/main i386 libxerces2-java all 2.12.2-1 [1440 kB] Get: 116 http://deb.debian.org/debian trixie/main i386 libnekohtml-java all 1.9.22.noko2-0.1 [125 kB] Get: 117 http://deb.debian.org/debian trixie/main i386 libxbean-reflect-java all 4.5-9 [132 kB] Get: 118 http://deb.debian.org/debian trixie/main i386 libgradle-core-java all 4.4.1-22 [4318 kB] Get: 119 http://deb.debian.org/debian trixie/main i386 libbcpg-java all 1.77-1 [428 kB] Get: 120 http://deb.debian.org/debian trixie/main i386 libbsh-java all 2.0b4-20 [291 kB] Get: 121 http://deb.debian.org/debian trixie/main i386 libdd-plist-java all 1.20-1.1 [72.6 kB] Get: 122 http://deb.debian.org/debian trixie/main i386 libjaxen-java all 1.1.6-5 [214 kB] Get: 123 http://deb.debian.org/debian trixie/main i386 libdom4j-java all 2.1.4-1 [312 kB] Get: 124 http://deb.debian.org/debian trixie/main i386 libcommons-lang3-java all 3.17.0-1 [641 kB] Get: 125 http://deb.debian.org/debian trixie/main i386 libbcel-java all 6.10.0-1 [674 kB] Get: 126 http://deb.debian.org/debian trixie/main i386 libjformatstring-java all 0.10~20131207-3 [34.8 kB] Get: 127 http://deb.debian.org/debian trixie/main i386 libfindbugs-java all 3.1.0~preview2-4 [3535 kB] Get: 128 http://deb.debian.org/debian trixie/main i386 libaopalliance-java all 20070526-7 [8572 B] Get: 129 http://deb.debian.org/debian trixie/main i386 libguice-java all 5.1.0-1 [932 kB] Get: 130 http://deb.debian.org/debian trixie/main i386 libjatl-java all 0.2.3-2 [30.1 kB] Get: 131 http://deb.debian.org/debian trixie/main i386 libjcifs-java all 1.3.19+dfsg-1 [414 kB] Get: 132 http://deb.debian.org/debian trixie/main i386 libjavaewah-java all 1.2.3-1 [159 kB] Get: 133 http://deb.debian.org/debian trixie/main i386 libel-api-java all 3.0.0-3 [64.9 kB] Get: 134 http://deb.debian.org/debian trixie/main i386 libwebsocket-api-java all 1.1-2 [40.1 kB] Get: 135 http://deb.debian.org/debian trixie/main i386 libjetty9-java all 9.4.56-1 [2964 kB] Get: 136 http://deb.debian.org/debian trixie/main i386 libjgit-java all 6.7.0-2 [3152 kB] Get: 137 http://deb.debian.org/debian trixie/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 138 http://deb.debian.org/debian trixie/main i386 libplexus-utils2-java all 3.4.2-1 [258 kB] Get: 139 http://deb.debian.org/debian trixie/main i386 libwagon-provider-api-java all 3.5.3-1 [48.2 kB] Get: 140 http://deb.debian.org/debian trixie/main i386 libmaven-resolver-java all 1.9.22-1 [729 kB] Get: 141 http://deb.debian.org/debian trixie/main i386 libgeronimo-annotation-1.3-spec-java all 1.3-1 [11.1 kB] Get: 142 http://deb.debian.org/debian trixie/main i386 libmaven-parent-java all 43-2 [6252 B] Get: 143 http://deb.debian.org/debian trixie/main i386 libmaven-shared-utils-java all 3.4.2-1 [137 kB] Get: 144 http://deb.debian.org/debian trixie/main i386 libplexus-cipher-java all 2.0-1 [14.9 kB] Get: 145 http://deb.debian.org/debian trixie/main i386 libplexus-classworlds-java all 2.7.0-1 [50.6 kB] Get: 146 http://deb.debian.org/debian trixie/main i386 libplexus-component-annotations-java all 2.1.1-1 [7660 B] Get: 147 http://deb.debian.org/debian trixie/main i386 libplexus-interpolation-java all 1.27-1 [76.8 kB] Get: 148 http://deb.debian.org/debian trixie/main i386 libplexus-sec-dispatcher-java all 2.0-3 [28.3 kB] Get: 149 http://deb.debian.org/debian trixie/main i386 libgeronimo-interceptor-3.0-spec-java all 1.0.1-5 [8444 B] Get: 150 http://deb.debian.org/debian trixie/main i386 libcdi-api-java all 1.2-4 [55.3 kB] Get: 151 http://deb.debian.org/debian trixie/main i386 libsisu-inject-java all 0.3.5-1 [352 kB] Get: 152 http://deb.debian.org/debian trixie/main i386 libsisu-plexus-java all 0.3.5-1 [183 kB] Get: 153 http://deb.debian.org/debian trixie/main i386 libmaven3-core-java all 3.9.9-1 [1661 kB] Get: 154 http://deb.debian.org/debian trixie/main i386 libplexus-container-default-java all 2.1.1-1 [193 kB] Get: 155 http://deb.debian.org/debian trixie/main i386 libpolyglot-maven-java all 0.8~tobrien+git20120905-10 [74.9 kB] Get: 156 http://deb.debian.org/debian trixie/main i386 librhino-java all 1.7.15-1 [1382 kB] Get: 157 http://deb.debian.org/debian trixie/main i386 libsimple-http-java all 4.1.21-1.1 [211 kB] Get: 158 http://deb.debian.org/debian trixie/main i386 libwagon-file-java all 3.5.3-1 [8388 B] Get: 159 http://deb.debian.org/debian trixie/main i386 libjsoup-java all 1.15.3-1 [431 kB] Get: 160 http://deb.debian.org/debian trixie/main i386 libwagon-http-java all 3.5.3-1 [49.5 kB] Get: 161 http://deb.debian.org/debian trixie/main i386 libjcommander-java all 1.71-4 [73.0 kB] Get: 162 http://deb.debian.org/debian trixie/main i386 testng all 6.9.12-4 [795 kB] Get: 163 http://deb.debian.org/debian trixie/main i386 libgradle-plugins-java all 4.4.1-22 [5245 kB] Get: 164 http://deb.debian.org/debian trixie/main i386 gradle all 4.4.1-22 [400 kB] Get: 165 http://deb.debian.org/debian trixie/main i386 maven-repo-helper all 1.11 [142 kB] Get: 166 http://deb.debian.org/debian trixie/main i386 gradle-debian-helper all 2.4 [24.5 kB] Get: 167 http://deb.debian.org/debian trixie/main i386 libfml0 i386 0.1+git20221215.85f159e-1 [89.1 kB] Get: 168 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Get: 169 http://deb.debian.org/debian trixie/main i386 libfml-dev i386 0.1+git20221215.85f159e-1 [101 kB] Fetched 239 MB in 2s (122 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19795 files and directories currently installed.) Preparing to unpack .../000-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../001-openssl_3.4.1-1_i386.deb ... Unpacking openssl (3.4.1-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../002-ca-certificates_20241223_all.deb ... Unpacking ca-certificates (20241223) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../003-libmagic-mgc_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../004-libmagic1t64_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../005-file_1%3a5.45-3+b1_i386.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../006-gettext-base_0.23.1-1_i386.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../007-libuchardet0_0.0.8-1+b2_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. 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Setting up libasm-java (9.7.1-1) ... Setting up libdd-plist-java (1.20-1.1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libel-api-java (3.0.0-3) ... Setting up libplexus-component-annotations-java (2.1.1-1) ... Setting up file (1:5.45-3+b1) ... Setting up libpolyglot-maven-java (0.8~tobrien+git20120905-10) ... Setting up libfelix-gogo-runtime-java (0.16.2-2) ... Setting up libjzlib-java (1.1.3-3) ... Setting up libfml0:i386 (0.1+git20221215.85f159e-1) ... Setting up libelf1t64:i386 (0.192-4) ... Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... Setting up libgeronimo-interceptor-3.0-spec-java (1.0.1-5) ... Setting up libcommons-collections3-java (3.2.2-3) ... Setting up libreflectasm-java (1.11.9+dfsg-4) ... Setting up librhino-java (1.7.15-1) ... Setting up autotools-dev (20220109.1) ... Setting up libbsf-java (1:2.4.0-8) ... Setting up libosgi-annotation-java (8.1.0-1) ... Setting up libjformatstring-java (0.10~20131207-3) ... Setting up libjavaewah-java (1.2.3-1) ... Setting up libjpeg62-turbo:i386 (1:2.1.5-3+b1) ... Setting up libjaxen-java (1.1.6-5) ... Setting up libnspr4:i386 (2:4.36-1) ... Setting up libeclipse-jdt-annotation-java (2.2.700+eclipse4.29-2) ... Setting up libjansi-java (2.4.1-2) ... Setting up libapache-pom-java (33-2) ... Setting up libxpp3-java (1.1.4c-4) ... Setting up libatinject-jsr330-api-java (1.0+ds1-6) ... Setting up libwebsocket-api-java (1.1-2) ... Setting up libplexus-interpolation-java (1.27-1) ... Setting up libunistring5:i386 (1.3-1) ... Setting up libxml-commons-resolver1.1-java (1.2-11) ... Setting up libkryo-java (2.20-8) ... Setting up libxz-java (1.9-1) ... Setting up autopoint (0.23.1-1) ... Setting up libjunixsocket-jni (2.6.1-1) ... Setting up libfelix-framework-java (4.6.1-3) ... Setting up libpcsclite1:i386 (2.3.1-1) ... Setting up libmongodb-java (3.6.3-2) ... Setting up libhamcrest-java (2.2-2) ... Setting up libbsh-java (2.0b4-20) ... 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Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libjatl-java (0.2.3-2) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libdom4j-java (2.1.4-1) ... Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up libwagon-provider-api-java (3.5.3-1) ... Setting up libnative-platform-java (0.14-6) ... Setting up libosgi-core-java (8.0.0-2) ... Setting up libxstream-java (1.4.21-1) ... Setting up libnekohtml-java (1.9.22.noko2-0.1) ... Setting up gettext (0.23.1-1) ... Setting up libjetty9-java (9.4.56-1) ... Setting up libfml-dev:i386 (0.1+git20221215.85f159e-1) ... Setting up java-wrappers (0.5) ... Setting up libosgi-compendium-java (7.0.0-1) ... Setting up libtool (2.5.4-3) ... Setting up libmaven-parent-java (43-2) ... Setting up libcommons-parent-java (56-1) ... Setting up libcommons-logging-java (1.3.0-1) ... Setting up libsisu-inject-java (0.3.5-1) ... Setting up libnss3:i386 (2:3.108-1) ... Setting up libcommons-lang-java (2.6-10) ... Setting up libjunixsocket-java (2.6.1-1) ... Setting up libplexus-cipher-java (2.0-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libsisu-plexus-java (0.3.5-1) ... Setting up testng (6.9.12-4) ... Setting up libjna-jni (5.15.0-1) ... Setting up libcommons-lang3-java (3.17.0-1) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up libfelix-resolver-java (1.16.0-1) ... Setting up libjansi-native-java (1.8-2) ... Setting up groff-base (1.23.0-7) ... Setting up libjna-java (5.15.0-1) ... Setting up libjansi1-java (1.18-3.1) ... Setting up libplexus-sec-dispatcher-java (2.0-3) ... Setting up ca-certificates-java (20240118) ... No JRE found. Skipping Java certificates setup. Setting up libwagon-file-java (3.5.3-1) ... Setting up libcommons-codec-java (1.17.1-1) ... Setting up libjline2-java (2.14.6-5) ... Setting up openjdk-21-jre-headless:i386 (21.0.6+7-1) ... update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libcommons-io-java (2.18.0-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libmaven-resolver-java (1.9.22-1) ... Setting up libbcel-java (6.10.0-1) ... Setting up libhttpclient-java (4.5.14-1) ... Setting up liblightcouch-java (0.2.0-1) ... Setting up libwagon-http-java (3.5.3-1) ... Setting up libmaven-shared-utils-java (3.4.2-1) ... Setting up libfindbugs-java (3.1.0~preview2-4) ... Setting up libcommons-compress-java (1.27.1-2) ... Setting up liblog4j2-java (2.19.0-2) ... Setting up debhelper (13.24.1) ... Setting up libjsch-java (0.2.19-1) ... Setting up libjgit-java (6.7.0-2) ... Setting up liberror-prone-java (2.18.0-1) ... Setting up libguava-java (32.0.1-1) ... Setting up libplexus-container-default-java (2.1.1-1) ... Setting up libguice-java (5.1.0-1) ... Setting up libmaven3-core-java (3.9.9-1) ... Processing triggers for libc-bin (2.40-6) ... Processing triggers for ca-certificates-java (20240118) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:BJCA_Global_Root_CA1.pem Adding debian:BJCA_Global_Root_CA2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:CommScope_Public_Trust_ECC_Root-01.pem Adding debian:CommScope_Public_Trust_ECC_Root-02.pem Adding debian:CommScope_Public_Trust_RSA_Root-01.pem Adding debian:CommScope_Public_Trust_RSA_Root-02.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureSign_Root_CA12.pem Adding debian:SecureSign_Root_CA14.pem Adding debian:SecureSign_Root_CA15.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_CYBER_Root_CA.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustAsia_Global_Root_CA_G3.pem Adding debian:TrustAsia_Global_Root_CA_G4.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up antlr (2.7.7+dfsg-14) ... Setting up ivy (2.5.2-1) ... Setting up ant (1.10.15-1) ... Setting up junit4 (4.13.2-5) ... Setting up groovy (2.4.21-10) ... update-alternatives: using /usr/share/groovy/bin/groovy to provide /usr/bin/groovy (groovy) in auto mode update-alternatives: using /usr/share/groovy/bin/groovyc to provide /usr/bin/groovyc (groovyc) in auto mode update-alternatives: using /usr/share/groovy/bin/grape to provide /usr/bin/grape (grape) in auto mode update-alternatives: using /usr/share/groovy/bin/startGroovy to provide /usr/bin/startGroovy (startGroovy) in auto mode update-alternatives: using /usr/share/groovy/bin/groovysh to provide /usr/bin/groovysh (groovysh) in auto mode update-alternatives: using /usr/share/groovy/bin/java2groovy to provide /usr/bin/java2groovy (java2groovy) in auto mode update-alternatives: using /usr/share/groovy/bin/groovyConsole to provide /usr/bin/groovyConsole (groovyConsole) in auto mode update-alternatives: using /usr/share/groovy/bin/groovydoc to provide /usr/bin/groovydoc (groovydoc) in auto mode Setting up openjdk-21-jdk-headless:i386 (21.0.6+7-1) ... update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jwebserver to provide /usr/bin/jwebserver (jwebserver) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up default-jre-headless (2:1.21-76) ... Setting up maven-repo-helper (1.11) ... Setting up ant-optional (1.10.15-1) ... Setting up bnd (5.0.1-5) ... Setting up default-jdk-headless (2:1.21-76) ... Setting up libgradle-core-java (4.4.1-22) ... Setting up libgradle-plugins-java (4.4.1-22) ... Setting up gradle (4.4.1-22) ... Setting up gradle-debian-helper (2.4) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20240118) ... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/73755/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/73755/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../gatk-fermilite_1.2.1+dfsg-2_source.changes dpkg-buildpackage: info: source package gatk-fermilite dpkg-buildpackage: info: source version 1.2.1+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Pierre Gruet dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --with maven_repo_helper debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg' dh_auto_clean sh -c "find . -wholename .*build/tmp | xargs echo | sed -e 's^build/tmp^build^g' | xargs rm -Rf" sh -c "find . -wholename .*build/debian | xargs echo | sed -e 's^build/tmp^build^g' | xargs rm -Rf" rm -Rf /build/reproducible-path/gatk-fermilite-1.2.1\+dfsg/.gradle /build/reproducible-path/gatk-fermilite-1.2.1\+dfsg/buildSrc/.gradle .m2 if [ -e src/main/c/org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.c.save ]; then \ mv src/main/c/org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.c.save src/main/c/org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.c; \ fi # Cleaning the C part cd src/main/c/ && make clean make[2]: Entering directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/c' rm -rf fermi-lite *.o *.so make[2]: Leaving directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/c' # Cleaning the custom pom rm debian/pom.xml rm: cannot remove 'debian/pom.xml': No such file or directory make[1]: [debian/rules:20: override_dh_auto_clean] Error 1 (ignored) make[1]: Leaving directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg' dh_clean debian/rules binary dh binary --with maven_repo_helper dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg' # Putting the version of fermi-lite in the JNI file so that is can output version information. cp src/main/c/org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.c src/main/c/org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.c.save fmlVersion=$(dpkg -s libfml-dev | grep "Version" | sed 's/Version: \(.*\)-.*/\1/') && \ sed -i "s/FML_COMMIT/\"$fmlVersion\"/" src/main/c/org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.c # Putting the version number in the custom pom. sed 's/\(VERSION_PACKAGE\)/\11.2.1+dfsg/; s/VERSION_PACKAGE\(.*\)+dfsg[0-9]*/\1/' debian/pom.xml.in > debian/pom.xml dh_auto_configure make[1]: Leaving directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg' dh_auto_build mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gatk-fermilite -Dfile.encoding=UTF-8 --parallel --max-workers=21 jar openjdk version "21.0.6" 2025-01-21 OpenJDK Runtime Environment (build 21.0.6+7-Debian-1) OpenJDK Server VM (build 21.0.6+7-Debian-1, mixed mode, sharing) Initialized native services in: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/native To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-i386/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' An attempt to start the daemon took 0.817 secs. The client will now receive all logging from the daemon (pid: 80196). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-80196.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 21 worker leases. Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@15adf45 Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@15adf45 Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@2d7e44 Starting Build Compiling initialization script '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@14f53b0 Compiling initialization script '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Compiling settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle' using SubsetScriptTransformer. Compiling settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle' using BuildScriptTransformer. Settings evaluated using settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle'. Projects loaded. Root project using build file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build.gradle'. Included projects: [root project 'gatk-fermilite'] Keep-alive timer started Adding Debian repository to project 'gatk-fermilite' Parallel execution is an incubating feature. Evaluating root project 'gatk-fermilite' using build file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build.gradle'. Compiling build file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build.gradle' using SubsetScriptTransformer. Compiling build file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build.gradle' using BuildScriptTransformer. Adding Maven pom generation to project 'gatk-fermilite' Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@7c9c17 Tasks to be executed: [task ':compileJava', task ':buildFermiLib', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@2d7e44 Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@149d8a1 Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@108889e :compileJava (Thread[#60,Task worker for ':' Thread 5,5,main]) started. :compileJava Putting task artifact state for task ':compileJava' into context took 0.003 secs. Up-to-date check for task ':compileJava' took 0.013 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. Compiling with JDK Java compiler API. :compileJava (Thread[#60,Task worker for ':' Thread 5,5,main]) completed. Took 0.776 secs. :buildFermiLib (Thread[#60,Task worker for ':' Thread 5,5,main]) started. :buildFermiLib Putting task artifact state for task ':buildFermiLib' into context took 0.0 secs. Up-to-date check for task ':buildFermiLib' took 0.001 secs. It is not up-to-date because: No history is available. using /usr/lib/jvm/java-21-openjdk-i386 -> /usr/lib/jvm/java-21-openjdk-i386 as JAVA_HOME Starting process 'command 'make''. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/c Command: make Successfully started process 'command 'make'' make[1]: Entering directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/c' gcc -g -O2 -Wall -fPIC -I/usr/lib/jvm/java-21-openjdk-i386/include -I/usr/lib/jvm/java-21-openjdk-i386/include/linux -Wdate-time -D_FORTIFY_SOURCE=2 -c -o org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.o org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.c gcc -dynamiclib -shared -o libfml.so org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.o /usr/lib/i386-linux-gnu/libfml.so -lm -lz -lpthread make[1]: Leaving directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/c' :buildFermiLib (Thread[#60,Task worker for ':' Thread 5,5,main]) completed. Took 0.202 secs. :processResources (Thread[#60,Task worker for ':' Thread 5,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/resources', not found Skipping task ':processResources' as it has no source files and no previous output files. :processResources NO-SOURCE :processResources (Thread[#60,Task worker for ':' Thread 5,5,main]) completed. Took 0.001 secs. :classes (Thread[#60,Task worker for ':' Thread 5,5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes (Thread[#60,Task worker for ':' Thread 5,5,main]) completed. Took 0.0 secs. :debianMavenPom (Thread[#60,Task worker for ':' Thread 5,5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. Up-to-date check for task ':debianMavenPom' took 0.0 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/debian/gatk-fermilite.pom :debianMavenPom (Thread[#60,Task worker for ':' Thread 5,5,main]) completed. Took 0.062 secs. :jar (Thread[#60,Task worker for ':' Thread 5,5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. Up-to-date check for task ':jar' took 0.003 secs. It is not up-to-date because: No history is available. :jar (Thread[#60,Task worker for ':' Thread 5,5,main]) completed. Took 0.034 secs. BUILD SUCCESSFUL in 5s 4 actionable tasks: 4 executed debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg' # The shared lib should be looked for in its build directory. LD_LIBRARY_PATH="$LD_LIBRARY_PATH:$(readlink -f src/main/c)" dh_auto_test mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gatk-fermilite -Dfile.encoding=UTF-8 --parallel --max-workers=21 test openjdk version "21.0.6" 2025-01-21 OpenJDK Runtime Environment (build 21.0.6+7-Debian-1) OpenJDK Server VM (build 21.0.6+7-Debian-1, mixed mode, sharing) Initialized native services in: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/native To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-i386/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' An attempt to start the daemon took 0.778 secs. The client will now receive all logging from the daemon (pid: 80965). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-80965.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 21 worker leases. Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@f67065 Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@f67065 Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@a7a918 Starting Build Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@1fe314c Settings evaluated using settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle'. Projects loaded. Root project using build file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build.gradle'. Included projects: [root project 'gatk-fermilite'] Keep-alive timer started Adding Debian repository to project 'gatk-fermilite' Parallel execution is an incubating feature. Evaluating root project 'gatk-fermilite' using build file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build.gradle'. Adding Maven pom generation to project 'gatk-fermilite' Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@1ea8ff6 Tasks to be executed: [task ':compileJava', task ':buildFermiLib', task ':processResources', task ':classes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test'] Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@a7a918 Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@a9b0b6 Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@20bd5f :compileJava (Thread[#60,Task worker for ':' Thread 5,5,main]) started. :compileJava Putting task artifact state for task ':compileJava' into context took 0.003 secs. Skipping task ':compileJava' as it is up-to-date (took 0.022 secs). :compileJava UP-TO-DATE :compileJava (Thread[#60,Task worker for ':' Thread 5,5,main]) completed. Took 0.065 secs. :buildFermiLib (Thread[#60,Task worker for ':' Thread 5,5,main]) started. :buildFermiLib Putting task artifact state for task ':buildFermiLib' into context took 0.0 secs. Skipping task ':buildFermiLib' as it is up-to-date (took 0.002 secs). :buildFermiLib UP-TO-DATE :buildFermiLib (Thread[#60,Task worker for ':' Thread 5,5,main]) completed. Took 0.005 secs. :processResources (Thread[#60,Task worker for ':' Thread 5,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/resources', not found Skipping task ':processResources' as it has no source files and no previous output files. :processResources NO-SOURCE :processResources (Thread[#60,Task worker for ':' Thread 5,5,main]) completed. Took 0.001 secs. :classes (Thread[#60,Task worker for ':' Thread 5,5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes UP-TO-DATE :classes (Thread[#60,Task worker for ':' Thread 5,5,main]) completed. Took 0.0 secs. :compileTestJava (Thread[#60,Task worker for ':' Thread 5,5,main]) started. :compileTestJava Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@1c8dc37 Loading the Maven rules... Replacing org.testng:testng:jar:6.9.6 -> org.testng:testng:jar:debian Passing through org.beanshell:bsh:jar:debian Passing through com.beust:jcommander:jar:debian Up-to-date check for task ':compileTestJava' took 0.393 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileTestJava'. Compiling with JDK Java compiler API. :compileTestJava (Thread[#60,Task worker for ':' Thread 5,5,main]) completed. Took 1.137 secs. :processTestResources (Thread[#60,Task worker for ':' Thread 5,5,main]) started. :processTestResources Putting task artifact state for task ':processTestResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/test/resources', not found Skipping task ':processTestResources' as it has no source files and no previous output files. :processTestResources NO-SOURCE :processTestResources (Thread[#60,Task worker for ':' Thread 5,5,main]) completed. Took 0.001 secs. :testClasses (Thread[#60,Task worker for ':' Thread 5,5,main]) started. :testClasses Skipping task ':testClasses' as it has no actions. :testClasses (Thread[#60,Task worker for ':' Thread 5,5,main]) completed. Took 0.0 secs. :test (Thread[#60,Task worker for ':' Thread 5,5,main]) started. :test Putting task artifact state for task ':test' into context took 0.0 secs. Up-to-date check for task ':test' took 0.058 secs. It is not up-to-date because: No history is available. Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg Command: /usr/lib/jvm/java-21-openjdk-i386/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath2416216564698293956txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' Successfully started process 'Gradle Test Executor 1' Gradle Test Executor 1 started executing tests. Gradle Test Executor 1 finished executing tests. Results: SUCCESS (2 tests, 2 successes, 0 failures, 0 skipped) Finished generating test XML results (0.007 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/test-results/test Generating HTML test report... Finished generating test html results (0.016 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/reports/tests/test :test (Thread[#60,Task worker for ':' Thread 5,5,main]) completed. Took 1.373 secs. BUILD SUCCESSFUL in 6s 4 actionable tasks: 2 executed, 2 up-to-date make[1]: Leaving directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install dh_install mh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libgatk-fermilite-java: substitution variable ${java:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'libgatk-fermilite-java' in '../libgatk-fermilite-java_1.2.1+dfsg-2_all.deb'. dpkg-deb: building package 'libgatk-fermilite-jni' in '../libgatk-fermilite-jni_1.2.1+dfsg-2_i386.deb'. dpkg-deb: building package 'libgatk-fermilite-jni-dbgsym' in '../libgatk-fermilite-jni-dbgsym_1.2.1+dfsg-2_i386.deb'. dpkg-genbuildinfo --build=binary -O../gatk-fermilite_1.2.1+dfsg-2_i386.buildinfo dpkg-genchanges --build=binary -O../gatk-fermilite_1.2.1+dfsg-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/73755/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/73755/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/73755 and its subdirectories I: Current time: Fri Mar 27 12:52:50 +14 2026 I: pbuilder-time-stamp: 1774565570 + false + set +x Thu Mar 26 22:52:50 UTC 2026 I: Signing ./b2/gatk-fermilite_1.2.1+dfsg-2_i386.buildinfo as gatk-fermilite_1.2.1+dfsg-2_i386.buildinfo.asc Thu Mar 26 22:52:51 UTC 2026 I: Signed ./b2/gatk-fermilite_1.2.1+dfsg-2_i386.buildinfo as ./b2/gatk-fermilite_1.2.1+dfsg-2_i386.buildinfo.asc Thu Mar 26 22:52:51 UTC 2026 - build #2 for gatk-fermilite/trixie/i386 on ionos16-i386 done. Starting cleanup. All cleanup done. Thu Mar 26 22:52:51 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-uTbqtmOz, removing. /srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L: total 116 drwxr-xr-x 2 jenkins jenkins 4096 Feb 21 16:28 b1 drwxr-xr-x 2 jenkins jenkins 4096 Feb 21 16:29 b2 -rw-r--r-- 1 jenkins jenkins 2209 Apr 5 2022 gatk-fermilite_1.2.1+dfsg-2.dsc -rw------- 1 jenkins jenkins 100505 Feb 21 16:28 rbuildlog.D7MAybv /srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L/b1: total 180 -rw-r--r-- 1 jenkins jenkins 96840 Feb 21 16:28 build.log -rw-r--r-- 1 jenkins jenkins 7468 Feb 21 16:28 gatk-fermilite_1.2.1+dfsg-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2209 Feb 21 16:28 gatk-fermilite_1.2.1+dfsg-2.dsc -rw-r--r-- 1 jenkins jenkins 9925 Feb 21 16:28 gatk-fermilite_1.2.1+dfsg-2_i386.buildinfo -rw-r--r-- 1 jenkins jenkins 10807 Feb 21 16:28 gatk-fermilite_1.2.1+dfsg-2_i386.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1942 Feb 21 16:28 gatk-fermilite_1.2.1+dfsg-2_i386.changes -rw-r--r-- 1 jenkins jenkins 1291 Feb 21 16:28 gatk-fermilite_1.2.1+dfsg-2_source.changes -rw-r--r-- 1 jenkins jenkins 12144 Feb 21 16:28 libgatk-fermilite-java_1.2.1+dfsg-2_all.deb -rw-r--r-- 1 jenkins jenkins 12528 Feb 21 16:28 libgatk-fermilite-jni-dbgsym_1.2.1+dfsg-2_i386.deb -rw-r--r-- 1 jenkins jenkins 4920 Feb 21 16:28 libgatk-fermilite-jni_1.2.1+dfsg-2_i386.deb /srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L/b2: total 180 -rw-r--r-- 1 jenkins jenkins 98741 Feb 21 16:29 build.log -rw-r--r-- 1 jenkins jenkins 7468 Feb 21 16:29 gatk-fermilite_1.2.1+dfsg-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2209 Feb 21 16:29 gatk-fermilite_1.2.1+dfsg-2.dsc -rw-r--r-- 1 jenkins jenkins 9925 Feb 21 16:29 gatk-fermilite_1.2.1+dfsg-2_i386.buildinfo -rw-r--r-- 1 jenkins jenkins 10807 Feb 21 16:29 gatk-fermilite_1.2.1+dfsg-2_i386.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1942 Feb 21 16:29 gatk-fermilite_1.2.1+dfsg-2_i386.changes -rw-r--r-- 1 jenkins jenkins 1291 Feb 21 16:29 gatk-fermilite_1.2.1+dfsg-2_source.changes -rw-r--r-- 1 jenkins jenkins 12144 Feb 21 16:29 libgatk-fermilite-java_1.2.1+dfsg-2_all.deb -rw-r--r-- 1 jenkins jenkins 12528 Feb 21 16:29 libgatk-fermilite-jni-dbgsym_1.2.1+dfsg-2_i386.deb -rw-r--r-- 1 jenkins jenkins 4920 Feb 21 16:29 libgatk-fermilite-jni_1.2.1+dfsg-2_i386.deb Fri Feb 21 16:29:52 UTC 2025 I: Deleting $TMPDIR on ionos16-i386.debian.net. Fri Feb 21 16:29:52 UTC 2025 I: gatk-fermilite_1.2.1+dfsg-2_i386.changes: Format: 1.8 Date: Tue, 05 Apr 2022 20:52:27 +0200 Source: gatk-fermilite Binary: libgatk-fermilite-java libgatk-fermilite-jni libgatk-fermilite-jni-dbgsym Architecture: all i386 Version: 1.2.1+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Pierre Gruet Description: libgatk-fermilite-java - interface to call Heng Li's fermi-lite assembler from Java code libgatk-fermilite-jni - interface to call Heng Li's fermi-lite assembler from Java code ( Changes: gatk-fermilite (1.2.1+dfsg-2) unstable; urgency=medium . * Source-only upload to unstable Checksums-Sha1: f846431dddff26b3fa683475f481ee76045b4b85 9925 gatk-fermilite_1.2.1+dfsg-2_i386.buildinfo abb09c1773028380db8bc68b0282ac59bfd0844e 12144 libgatk-fermilite-java_1.2.1+dfsg-2_all.deb b95ddcbd15f02b4e0739f57672f77738f6ac54ce 12528 libgatk-fermilite-jni-dbgsym_1.2.1+dfsg-2_i386.deb 1fc5c38f434e8c544d90d9eaf2929c467297c2c9 4920 libgatk-fermilite-jni_1.2.1+dfsg-2_i386.deb Checksums-Sha256: 69f3cfdf4229070ba277b6868fca9aff3917bc70026f6cf1ae6c6cb47d2f711c 9925 gatk-fermilite_1.2.1+dfsg-2_i386.buildinfo 570933ab74414f4e1a1b44167ab46f92e123122fba67314eed67056680766114 12144 libgatk-fermilite-java_1.2.1+dfsg-2_all.deb 4942ef33eba555a59e630648c22b79394e2a26c79e1af8c24b945563a30d8146 12528 libgatk-fermilite-jni-dbgsym_1.2.1+dfsg-2_i386.deb 20a04c2c00104578b710a25264735d07859ef72440bd54f788be083f6340e33f 4920 libgatk-fermilite-jni_1.2.1+dfsg-2_i386.deb Files: 43031cb279007a631f8ce6478593cc41 9925 java optional gatk-fermilite_1.2.1+dfsg-2_i386.buildinfo c82cdaa002d5bd3dd7625e2fae53dbd6 12144 java optional libgatk-fermilite-java_1.2.1+dfsg-2_all.deb a73fa9471648dd1dd23714a8217317ce 12528 debug optional libgatk-fermilite-jni-dbgsym_1.2.1+dfsg-2_i386.deb 7db4baecf33bda7bc81d861e0fc00957 4920 java optional libgatk-fermilite-jni_1.2.1+dfsg-2_i386.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/gatk-fermilite_1.2.1+dfsg-2.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/gatk-fermilite_1.2.1+dfsg-2.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/gatk-fermilite_1.2.1+dfsg-2.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/gatk-fermilite_1.2.1+dfsg-2.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/i386/gatk-fermilite_1.2.1+dfsg-2_i386.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/gatk-fermilite_1.2.1+dfsg-2.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-02-21 16:28:52.380326024 +0000 +++ b2/build.log 2025-02-21 16:29:52.233626020 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Feb 21 04:27:02 -12 2025 -I: pbuilder-time-stamp: 1740155222 +I: Current time: Fri Mar 27 12:51:53 +14 2026 +I: pbuilder-time-stamp: 1774565513 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -27,54 +27,86 @@ dpkg-source: info: applying rename_bseq1_t.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/52976/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/73755/tmp/hooks/D01_modify_environment starting +debug: Running on ionos16-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 26 22:52 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/73755/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/73755/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='5fa27caf3e65493795fb16c72cc05536' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='52976' - PS1='# ' - PS2='> ' + INVOCATION_ID=dd2e2ac99d73424b8f2cfdce133d40d2 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=73755 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L/pbuilderrc_S9Bb --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L/b1 --logfile b1/build.log gatk-fermilite_1.2.1+dfsg-2.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L/pbuilderrc_lOhJ --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L/b2 --logfile b2/build.log gatk-fermilite_1.2.1+dfsg-2.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos12-i386 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/52976/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/73755/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -289,7 +321,7 @@ Get: 167 http://deb.debian.org/debian trixie/main i386 libfml0 i386 0.1+git20221215.85f159e-1 [89.1 kB] Get: 168 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Get: 169 http://deb.debian.org/debian trixie/main i386 libfml-dev i386 0.1+git20221215.85f159e-1 [101 kB] -Fetched 239 MB in 4s (60.9 MB/s) +Fetched 239 MB in 2s (122 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19795 files and directories currently installed.) @@ -1181,7 +1213,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gatk-fermilite_1.2.1+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/73755/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/73755/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../gatk-fermilite_1.2.1+dfsg-2_source.changes dpkg-buildpackage: info: source package gatk-fermilite dpkg-buildpackage: info: source version 1.2.1+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -1227,7 +1263,7 @@ dh_auto_build mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gatk-fermilite -Dfile.encoding=UTF-8 --parallel --max-workers=11 jar + gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gatk-fermilite -Dfile.encoding=UTF-8 --parallel --max-workers=21 jar openjdk version "21.0.6" 2025-01-21 OpenJDK Runtime Environment (build 21.0.6+7-Debian-1) OpenJDK Server VM (build 21.0.6+7-Debian-1, mixed mode, sharing) @@ -1235,18 +1271,18 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-i386/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 1.949 secs. -The client will now receive all logging from the daemon (pid: 59882). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-59882.out.log +An attempt to start the daemon took 0.817 secs. +The client will now receive all logging from the daemon (pid: 80196). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-80196.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. -Using 11 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@e2154b -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@e2154b -Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@62dacc +Using 21 worker leases. +Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@15adf45 +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@15adf45 +Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@2d7e44 Starting Build Compiling initialization script '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. -Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@b7e3ba +Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@14f53b0 Compiling initialization script '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Compiling settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle' using SubsetScriptTransformer. Compiling settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle' using BuildScriptTransformer. @@ -1263,23 +1299,23 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@14bb7c2 +Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@7c9c17 Tasks to be executed: [task ':compileJava', task ':buildFermiLib', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@62dacc -Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@f8e847 -Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@13d6935 -:compileJava (Thread[#54,Task worker for ':' Thread 5,5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@2d7e44 +Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@149d8a1 +Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@108889e +:compileJava (Thread[#60,Task worker for ':' Thread 5,5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.016 secs. -Up-to-date check for task ':compileJava' took 0.034 secs. It is not up-to-date because: +Putting task artifact state for task ':compileJava' into context took 0.003 secs. +Up-to-date check for task ':compileJava' took 0.013 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. Compiling with JDK Java compiler API. -:compileJava (Thread[#54,Task worker for ':' Thread 5,5,main]) completed. Took 2.351 secs. -:buildFermiLib (Thread[#54,Task worker for ':' Thread 5,5,main]) started. +:compileJava (Thread[#60,Task worker for ':' Thread 5,5,main]) completed. Took 0.776 secs. +:buildFermiLib (Thread[#60,Task worker for ':' Thread 5,5,main]) started. :buildFermiLib Putting task artifact state for task ':buildFermiLib' into context took 0.0 secs. -Up-to-date check for task ':buildFermiLib' took 0.007 secs. It is not up-to-date because: +Up-to-date check for task ':buildFermiLib' took 0.001 secs. It is not up-to-date because: No history is available. using /usr/lib/jvm/java-21-openjdk-i386 -> /usr/lib/jvm/java-21-openjdk-i386 as JAVA_HOME Starting process 'command 'make''. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/c Command: make @@ -1288,33 +1324,33 @@ gcc -g -O2 -Wall -fPIC -I/usr/lib/jvm/java-21-openjdk-i386/include -I/usr/lib/jvm/java-21-openjdk-i386/include/linux -Wdate-time -D_FORTIFY_SOURCE=2 -c -o org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.o org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.c gcc -dynamiclib -shared -o libfml.so org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.o /usr/lib/i386-linux-gnu/libfml.so -lm -lz -lpthread make[1]: Leaving directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/c' -:buildFermiLib (Thread[#54,Task worker for ':' Thread 5,5,main]) completed. Took 0.476 secs. -:processResources (Thread[#54,Task worker for ':' Thread 5,5,main]) started. +:buildFermiLib (Thread[#60,Task worker for ':' Thread 5,5,main]) completed. Took 0.202 secs. +:processResources (Thread[#60,Task worker for ':' Thread 5,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/resources', not found Skipping task ':processResources' as it has no source files and no previous output files. :processResources NO-SOURCE -:processResources (Thread[#54,Task worker for ':' Thread 5,5,main]) completed. Took 0.023 secs. -:classes (Thread[#54,Task worker for ':' Thread 5,5,main]) started. +:processResources (Thread[#60,Task worker for ':' Thread 5,5,main]) completed. Took 0.001 secs. +:classes (Thread[#60,Task worker for ':' Thread 5,5,main]) started. :classes Skipping task ':classes' as it has no actions. -:classes (Thread[#54,Task worker for ':' Thread 5,5,main]) completed. Took 0.006 secs. -:debianMavenPom (Thread[#54,Task worker for ':' Thread 5,5,main]) started. +:classes (Thread[#60,Task worker for ':' Thread 5,5,main]) completed. Took 0.0 secs. +:debianMavenPom (Thread[#60,Task worker for ':' Thread 5,5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. -Up-to-date check for task ':debianMavenPom' took 0.001 secs. It is not up-to-date because: +Up-to-date check for task ':debianMavenPom' took 0.0 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/debian/gatk-fermilite.pom -:debianMavenPom (Thread[#54,Task worker for ':' Thread 5,5,main]) completed. Took 0.163 secs. -:jar (Thread[#54,Task worker for ':' Thread 5,5,main]) started. +:debianMavenPom (Thread[#60,Task worker for ':' Thread 5,5,main]) completed. Took 0.062 secs. +:jar (Thread[#60,Task worker for ':' Thread 5,5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. -Up-to-date check for task ':jar' took 0.016 secs. It is not up-to-date because: +Up-to-date check for task ':jar' took 0.003 secs. It is not up-to-date because: No history is available. -:jar (Thread[#54,Task worker for ':' Thread 5,5,main]) completed. Took 0.129 secs. +:jar (Thread[#60,Task worker for ':' Thread 5,5,main]) completed. Took 0.034 secs. -BUILD SUCCESSFUL in 14s +BUILD SUCCESSFUL in 5s 4 actionable tasks: 4 executed debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg' @@ -1322,7 +1358,7 @@ LD_LIBRARY_PATH="$LD_LIBRARY_PATH:$(readlink -f src/main/c)" dh_auto_test mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gatk-fermilite -Dfile.encoding=UTF-8 --parallel --max-workers=11 test + gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=gatk-fermilite -Dfile.encoding=UTF-8 --parallel --max-workers=21 test openjdk version "21.0.6" 2025-01-21 OpenJDK Runtime Environment (build 21.0.6+7-Debian-1) OpenJDK Server VM (build 21.0.6+7-Debian-1, mixed mode, sharing) @@ -1330,17 +1366,17 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-i386/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 1.546 secs. -The client will now receive all logging from the daemon (pid: 60591). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-60591.out.log +An attempt to start the daemon took 0.778 secs. +The client will now receive all logging from the daemon (pid: 80965). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-80965.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. -Using 11 worker leases. +Using 21 worker leases. Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@f67065 Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@f67065 -Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1b809d6 +Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@a7a918 Starting Build -Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@1ae08c2 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@1fe314c Settings evaluated using settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle'. Projects loaded. Root project using build file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build.gradle'. Included projects: [root project 'gatk-fermilite'] @@ -1352,75 +1388,75 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@2a208d +Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@1ea8ff6 Tasks to be executed: [task ':compileJava', task ':buildFermiLib', task ':processResources', task ':classes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1b809d6 -Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@11b70bd -Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@13f53f3 -:compileJava (Thread[#53,Task worker for ':' Thread 4,5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@a7a918 +Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@a9b0b6 +Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@20bd5f +:compileJava (Thread[#60,Task worker for ':' Thread 5,5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.006 secs. -Skipping task ':compileJava' as it is up-to-date (took 0.046 secs). +Putting task artifact state for task ':compileJava' into context took 0.003 secs. +Skipping task ':compileJava' as it is up-to-date (took 0.022 secs). :compileJava UP-TO-DATE -:compileJava (Thread[#53,Task worker for ':' Thread 4,5,main]) completed. Took 0.099 secs. -:buildFermiLib (Thread[#53,Task worker for ':' Thread 4,5,main]) started. +:compileJava (Thread[#60,Task worker for ':' Thread 5,5,main]) completed. Took 0.065 secs. +:buildFermiLib (Thread[#60,Task worker for ':' Thread 5,5,main]) started. :buildFermiLib Putting task artifact state for task ':buildFermiLib' into context took 0.0 secs. -Skipping task ':buildFermiLib' as it is up-to-date (took 0.004 secs). +Skipping task ':buildFermiLib' as it is up-to-date (took 0.002 secs). :buildFermiLib UP-TO-DATE -:buildFermiLib (Thread[#53,Task worker for ':' Thread 4,5,main]) completed. Took 0.01 secs. -:processResources (Thread[#53,Task worker for ':' Thread 4,5,main]) started. +:buildFermiLib (Thread[#60,Task worker for ':' Thread 5,5,main]) completed. Took 0.005 secs. +:processResources (Thread[#60,Task worker for ':' Thread 5,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/resources', not found Skipping task ':processResources' as it has no source files and no previous output files. :processResources NO-SOURCE -:processResources (Thread[#53,Task worker for ':' Thread 4,5,main]) completed. Took 0.003 secs. -:classes (Thread[#53,Task worker for ':' Thread 4,5,main]) started. +:processResources (Thread[#60,Task worker for ':' Thread 5,5,main]) completed. Took 0.001 secs. +:classes (Thread[#60,Task worker for ':' Thread 5,5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes UP-TO-DATE -:classes (Thread[#53,Task worker for ':' Thread 4,5,main]) completed. Took 0.001 secs. -:compileTestJava (Thread[#53,Task worker for ':' Thread 4,5,main]) started. +:classes (Thread[#60,Task worker for ':' Thread 5,5,main]) completed. Took 0.0 secs. +:compileTestJava (Thread[#60,Task worker for ':' Thread 5,5,main]) started. :compileTestJava Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. -Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@14bf92f +Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@1c8dc37 Loading the Maven rules... Replacing org.testng:testng:jar:6.9.6 -> org.testng:testng:jar:debian Passing through org.beanshell:bsh:jar:debian Passing through com.beust:jcommander:jar:debian -Up-to-date check for task ':compileTestJava' took 0.825 secs. It is not up-to-date because: +Up-to-date check for task ':compileTestJava' took 0.393 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileTestJava'. Compiling with JDK Java compiler API. -:compileTestJava (Thread[#53,Task worker for ':' Thread 4,5,main]) completed. Took 2.68 secs. -:processTestResources (Thread[#53,Task worker for ':' Thread 4,5,main]) started. +:compileTestJava (Thread[#60,Task worker for ':' Thread 5,5,main]) completed. Took 1.137 secs. +:processTestResources (Thread[#60,Task worker for ':' Thread 5,5,main]) started. :processTestResources Putting task artifact state for task ':processTestResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/test/resources', not found Skipping task ':processTestResources' as it has no source files and no previous output files. :processTestResources NO-SOURCE -:processTestResources (Thread[#53,Task worker for ':' Thread 4,5,main]) completed. Took 0.003 secs. -:testClasses (Thread[#53,Task worker for ':' Thread 4,5,main]) started. +:processTestResources (Thread[#60,Task worker for ':' Thread 5,5,main]) completed. Took 0.001 secs. +:testClasses (Thread[#60,Task worker for ':' Thread 5,5,main]) started. :testClasses Skipping task ':testClasses' as it has no actions. -:testClasses (Thread[#53,Task worker for ':' Thread 4,5,main]) completed. Took 0.001 secs. -:test (Thread[#53,Task worker for ':' Thread 4,5,main]) started. +:testClasses (Thread[#60,Task worker for ':' Thread 5,5,main]) completed. Took 0.0 secs. +:test (Thread[#60,Task worker for ':' Thread 5,5,main]) started. :test Putting task artifact state for task ':test' into context took 0.0 secs. -Up-to-date check for task ':test' took 0.142 secs. It is not up-to-date because: +Up-to-date check for task ':test' took 0.058 secs. It is not up-to-date because: No history is available. -Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg Command: /usr/lib/jvm/java-21-openjdk-i386/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath5028028391587859174txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' +Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg Command: /usr/lib/jvm/java-21-openjdk-i386/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath2416216564698293956txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' Successfully started process 'Gradle Test Executor 1' Gradle Test Executor 1 started executing tests. Gradle Test Executor 1 finished executing tests. Results: SUCCESS (2 tests, 2 successes, 0 failures, 0 skipped) -Finished generating test XML results (0.015 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/test-results/test +Finished generating test XML results (0.007 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/test-results/test Generating HTML test report... -Finished generating test html results (0.034 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/reports/tests/test -:test (Thread[#53,Task worker for ':' Thread 4,5,main]) completed. Took 2.151 secs. +Finished generating test html results (0.016 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/reports/tests/test +:test (Thread[#60,Task worker for ':' Thread 5,5,main]) completed. Took 1.373 secs. -BUILD SUCCESSFUL in 13s +BUILD SUCCESSFUL in 6s 4 actionable tasks: 2 executed, 2 up-to-date make[1]: Leaving directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg' create-stamp debian/debhelper-build-stamp @@ -1446,8 +1482,8 @@ dh_md5sums dh_builddeb dpkg-deb: building package 'libgatk-fermilite-java' in '../libgatk-fermilite-java_1.2.1+dfsg-2_all.deb'. -dpkg-deb: building package 'libgatk-fermilite-jni-dbgsym' in '../libgatk-fermilite-jni-dbgsym_1.2.1+dfsg-2_i386.deb'. dpkg-deb: building package 'libgatk-fermilite-jni' in '../libgatk-fermilite-jni_1.2.1+dfsg-2_i386.deb'. +dpkg-deb: building package 'libgatk-fermilite-jni-dbgsym' in '../libgatk-fermilite-jni-dbgsym_1.2.1+dfsg-2_i386.deb'. dpkg-genbuildinfo --build=binary -O../gatk-fermilite_1.2.1+dfsg-2_i386.buildinfo dpkg-genchanges --build=binary -O../gatk-fermilite_1.2.1+dfsg-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1455,12 +1491,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/73755/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/73755/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/52976 and its subdirectories -I: Current time: Fri Feb 21 04:28:51 -12 2025 -I: pbuilder-time-stamp: 1740155331 +I: removing directory /srv/workspace/pbuilder/73755 and its subdirectories +I: Current time: Fri Mar 27 12:52:50 +14 2026 +I: pbuilder-time-stamp: 1774565570 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/gatk-fermilite_1.2.1+dfsg-2.diff: 80.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/gatk-fermilite_1.2.1+dfsg-2.diff.gz b2/build.log: 81.7% -- replaced with stdout Compressing the 1st log... b1/build.log: 82.1% -- replaced with stdout Fri Feb 21 16:29:53 UTC 2025 I: diffoscope 288 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_gatk-fermilite_trixie_i386_1740155393 + touch /var/log/reproducible-builds/diffoscope_stamp_gatk-fermilite_trixie_i386_1740155393 + RESULT=0 + systemd-run '--description=diffoscope on gatk-fermilite/1.2.1+dfsg-2 in trixie/i386' --slice=rb-build-diffoscope.slice -u rb-diffoscope-i386_12-40759 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L --run-session -c jenkins-reproducible-trixie-diffoscope-42359b7b-f324-4ea1-818a-696d2ddc002f -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L/dbd-tmp-TEPiXvX ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L/gatk-fermilite_1.2.1+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L/gatk-fermilite_1.2.1+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L/gatk-fermilite_1.2.1+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L/b1/gatk-fermilite_1.2.1+dfsg-2_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L/b2/gatk-fermilite_1.2.1+dfsg-2_i386.changes' + false + set +x Running as unit: rb-diffoscope-i386_12-40759.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L/gatk-fermilite_1.2.1+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L/gatk-fermilite_1.2.1+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L/gatk-fermilite_1.2.1+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L/b1/gatk-fermilite_1.2.1+dfsg-2_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.RyvYeV7L/b2/gatk-fermilite_1.2.1+dfsg-2_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 225ms CPU time consumed: 226ms _ _ __ _ _ _ _ __ _ __ _| |_| | __ / _| ___ _ __ _ __ ___ (_) (_) |_ ___ / _` |/ _` | __| |/ /____| |_ / _ \ '__| '_ ` _ \| | | | __/ _ \ | (_| | (_| | |_| <_____| _| __/ | | | | | | | | | | || __/ \__, |\__,_|\__|_|\_\ |_| \___|_| |_| |_| |_|_|_|_|\__\___| |___/ Fri Feb 21 16:29:54 UTC 2025 I: diffoscope 288 found no differences in the changes files, and a .buildinfo file also exists. Fri Feb 21 16:29:54 UTC 2025 I: gatk-fermilite from trixie built successfully and reproducibly on i386. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-02-21 16:29:54] INFO: Starting at 2025-02-21 16:29:54.807926 [2025-02-21 16:29:54] INFO: Generating the pages of 1 package(s) [2025-02-21 16:29:55] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/i386/gatk-fermilite didn't produce a buildlog, even though it has been built. [2025-02-21 16:29:55] INFO: Finished at 2025-02-21 16:29:55.061611, took: 0:00:00.253693 Fri Feb 21 16:29:55 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/i386/gatk-fermilite.html Fri Feb 21 16:29:55 UTC 2025 I: Submitting .buildinfo files to external archives: Fri Feb 21 16:29:55 UTC 2025 I: Submitting 12K b1/gatk-fermilite_1.2.1+dfsg-2_i386.buildinfo.asc https://buildinfo.debian.net/f846431dddff26b3fa683475f481ee76045b4b85/gatk-fermilite_1.2.1+dfsg-2_all Fri Feb 21 16:29:56 UTC 2025 I: Submitting 12K b2/gatk-fermilite_1.2.1+dfsg-2_i386.buildinfo.asc https://buildinfo.debian.net/0f3970ecea54e0e01efcd682e276753e6c5dcb4d/gatk-fermilite_1.2.1+dfsg-2_all Fri Feb 21 16:29:59 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Feb 21 16:29:59 UTC 2025 I: Done submitting .buildinfo files. Fri Feb 21 16:29:59 UTC 2025 I: Removing signed gatk-fermilite_1.2.1+dfsg-2_i386.buildinfo.asc files: removed './b1/gatk-fermilite_1.2.1+dfsg-2_i386.buildinfo.asc' removed './b2/gatk-fermilite_1.2.1+dfsg-2_i386.buildinfo.asc' 1740155399 i386 trixie gatk-fermilite Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/gatk-fermilite_1.2.1+dfsg-2.rbuild.log: 80.5% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/gatk-fermilite_1.2.1+dfsg-2.rbuild.log.gz [2025-02-21 16:29:59] INFO: Starting at 2025-02-21 16:29:59.684230 [2025-02-21 16:29:59] INFO: Generating the pages of 1 package(s) [2025-02-21 16:29:59] INFO: Finished at 2025-02-21 16:29:59.931323, took: 0:00:00.247099 All cleanup done. Fri Feb 21 16:30:00 UTC 2025 - total duration: 0h 3m 8s. Fri Feb 21 16:30:00 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-KDE8ACEJ, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 3min 13.695s CPU time consumed: 6.745s