Running as unit: rb-build-i386_13-51302.service ==================================================================================== Fri Nov 22 07:35:42 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_i386_13) on jenkins, called using "infom07-i386 infom08-i386" as arguments. Fri Nov 22 07:35:42 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-vdJ7d9QF" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Nov 22 07:35:42 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom07-i386.debian.net is marked as down. Fri Nov 22 07:35:42 UTC 2024 - checking via ssh if infom07-i386.debian.net is up. removed '/tmp/read-only-fs-test-tfN2M9' Fri Nov 22 07:35:43 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom08-i386.debian.net is marked as down. Fri Nov 22 07:35:43 UTC 2024 - checking via ssh if infom08-i386.debian.net is up. removed '/tmp/read-only-fs-test-oVjtGK' ok, let's check if metaphlan is building anywhere yet… ok, metaphlan is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of metaphlan in unstable on i386 on jenkins now. 1st build will be done on infom07-i386.debian.net. 2nd build will be done on infom08-i386.debian.net. ============================================================================= Fri Nov 22 07:36:01 UTC 2024 I: starting to build metaphlan/unstable/i386 on jenkins on '2024-11-22 07:35' Fri Nov 22 07:36:01 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_13/51302/console.log 1732260961 i386 unstable metaphlan Fri Nov 22 07:36:01 UTC 2024 I: Downloading source for unstable/metaphlan=4.0.4-1 --2024-11-22 07:36:01-- http://deb.debian.org/debian/pool/main/m/metaphlan/metaphlan_4.0.4-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2047 (2.0K) [text/prs.lines.tag] Saving to: ‘metaphlan_4.0.4-1.dsc’ 0K . 100% 206M=0s 2024-11-22 07:36:01 (206 MB/s) - ‘metaphlan_4.0.4-1.dsc’ saved [2047/2047] --2024-11-22 07:36:01-- http://deb.debian.org/debian/pool/main/m/metaphlan/metaphlan_4.0.4-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2047 (2.0K) [text/prs.lines.tag] Saving to: ‘metaphlan_4.0.4-1.dsc’ 0K . 100% 206M=0s 2024-11-22 07:36:01 (206 MB/s) - ‘metaphlan_4.0.4-1.dsc’ saved [2047/2047] Fri Nov 22 07:36:01 UTC 2024 I: metaphlan_4.0.4-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: metaphlan Binary: metaphlan Architecture: all Version: 4.0.4-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/biobakery/MetaPhlAn Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/metaphlan Vcs-Git: https://salsa.debian.org/med-team/metaphlan.git Build-Depends: debhelper-compat (= 13), python3, dh-python, pandoc, bowtie2, python3-setuptools, python3-biopython Package-List: metaphlan deb science optional arch=all Checksums-Sha1: 6155334673fac2ac7b4957019f7f59438e5c0042 1891888 metaphlan_4.0.4.orig.tar.gz 42359168a4bd3c44441da28cad4ce600270bc190 458252 metaphlan_4.0.4-1.debian.tar.xz Checksums-Sha256: 3eccd2d76fd137cd113fb35700452aa215b5f0af32f4e1173c1db6366d0ac304 1891888 metaphlan_4.0.4.orig.tar.gz e70a8a0acf7e032cf217dadf9b8312ba40b4be3f344daae1fc80b8bb3fadb2a7 458252 metaphlan_4.0.4-1.debian.tar.xz Files: 3d9fb1e382d01e6f95879a05f449d364 1891888 metaphlan_4.0.4.orig.tar.gz 43d9caf26dd36d38b5653efd77be7d54 458252 metaphlan_4.0.4-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmPadA8RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGfeA//eiKVPU5YiIy5zNhXLGq0ZALV2Uw/vwdq xY7TBN8EAuI3bVDamCRceM6UWYy0Hl+f1SY+NJ6CWHw87G9q7TAwDRHk0lFuAC6s GsjdcvxPM0xGu3ViUsVgiOGYVQS5Z4Rh1ZDJjaowU6JGW7yh7qGbS+zFh/WHUQRS xpkjviaQTK/0ZpTU/2pFtnsG4E9qZ7O1MC08oKByMxPsozTtYHA/hdSx5+iu/pl6 S1/WQ0qknq0FvozW1ts1IaY+D9+viAX+NKnOxz04n8Gnp8TQOIH97b/MKUGPc/bK +gUJ03qH4iOSReCJYHwi7Wz8+Cg8r0HIMhO9LaoWi/OpHXZLAI8FbFxkUwpl6fFq 7T0U7T6wbhMOedtNviXG/pM9Trvy8RoFmCfMwwFjnutzaL9XLqEoErCHcQKji/sk OBa+kIOTnSE7SFFDw+muKgBViF1HIwJ9zIUeVrKwIbvIeAXloQzuvYy2KdCZm9LR D9jw+ZhKyVjlDvfQ0BgRbkwqY/gMDiC7ffJ4KqWzE/sKDBmY6FwTQxo42BXnImmv tqM/DMsXjOUxDO8yCDl8GbEQttZc91oeQY7BtL4jMjgqIP6RqSc7/7vU6DKsyQUv cyLh0Ei86Cov1UUBwSLHHJx4Xi9HMXI6ljbveGefmaaKKuzxrsyWPsf2qh+c9Equ gRgrrCFC7yI= =Uzhz -----END PGP SIGNATURE----- Fri Nov 22 07:36:01 UTC 2024 I: Checking whether the package is not for us Fri Nov 22 07:36:01 UTC 2024 I: Starting 1st build on remote node infom07-i386.debian.net. Fri Nov 22 07:36:01 UTC 2024 I: Preparing to do remote build '1' on infom07-i386.debian.net. Fri Nov 22 07:36:01 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom07-i386.debian.net is marked as down. Fri Nov 22 07:36:01 UTC 2024 - checking via ssh if infom07-i386.debian.net is up. removed '/tmp/read-only-fs-test-lYbvVo' ==================================================================================== Fri Nov 22 07:36:02 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom07-i386, called using "1 metaphlan unstable /srv/reproducible-results/rbuild-debian/r-b-build.UDFeObXr 4.0.4-1" as arguments. Fri Nov 22 07:36:02 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-upbXhAe7" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Nov 22 07:36:02 UTC 2024 I: Downloading source for unstable/metaphlan=4.0.4-1 Reading package lists... NOTICE: 'metaphlan' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/metaphlan.git Please use: git clone https://salsa.debian.org/med-team/metaphlan.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2352 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main metaphlan 4.0.4-1 (dsc) [2047 B] Get:2 http://deb.debian.org/debian unstable/main metaphlan 4.0.4-1 (tar) [1892 kB] Get:3 http://deb.debian.org/debian unstable/main metaphlan 4.0.4-1 (diff) [458 kB] Fetched 2352 kB in 0s (16.1 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'metaphlan' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/metaphlan.git Please use: git clone https://salsa.debian.org/med-team/metaphlan.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2352 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main metaphlan 4.0.4-1 (dsc) [2047 B] Get:2 http://deb.debian.org/debian unstable/main metaphlan 4.0.4-1 (tar) [1892 kB] Get:3 http://deb.debian.org/debian unstable/main metaphlan 4.0.4-1 (diff) [458 kB] Fetched 2352 kB in 0s (16.1 MB/s) Download complete and in download only mode ============================================================================= Building metaphlan in unstable on i386 on infom07-i386 now. Date: Fri Nov 22 07:36:03 UTC 2024 Date UTC: Fri Nov 22 07:36:03 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Nov 21 19:36:03 -12 2024 I: pbuilder-time-stamp: 1732260963 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [metaphlan_4.0.4-1.dsc] I: copying [./metaphlan_4.0.4.orig.tar.gz] I: copying [./metaphlan_4.0.4-1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Feb 1 14:15:43 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./metaphlan_4.0.4-1.dsc: no acceptable signature found dpkg-source: info: extracting metaphlan in metaphlan-4.0.4 dpkg-source: info: unpacking metaphlan_4.0.4.orig.tar.gz dpkg-source: info: unpacking metaphlan_4.0.4-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/8509/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='43bb25cb06b445469501ff73dd55f237' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='8509' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UDFeObXr/pbuilderrc_Uo9L --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UDFeObXr/b1 --logfile b1/build.log metaphlan_4.0.4-1.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom07-i386 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/8509/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), python3, dh-python, pandoc, bowtie2, python3-setuptools, python3-biopython dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19952 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on pandoc; however: Package pandoc is not installed. pbuilder-satisfydepends-dummy depends on bowtie2; however: Package bowtie2 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} liblerc4{a} liblua5.4-0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libnuma1{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} pandoc{a} pandoc-data{a} po-debconf{a} python3{a} python3-autocommand{a} python3-biopython{a} python3-cairo{a} python3-chardet{a} python3-freetype{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile shared-mime-info wget xdg-user-dirs 0 packages upgraded, 122 newly installed, 0 to remove and 0 not upgraded. Need to get 99.8 MB of archives. After unpacking 512 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: bowtie2 which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} liblerc4{a} liblua5.4-0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libnuma1{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} pandoc{a} pandoc-data{a} po-debconf{a} python3{a} python3-autocommand{a} python3-biopython{a} python3-cairo{a} python3-chardet{a} python3-freetype{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile shared-mime-info wget xdg-user-dirs 0 packages upgraded, 122 newly installed, 0 to remove and 0 not upgraded. Need to get 99.8 MB of archives. After unpacking 512 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/8509 and its subdirectories Starting cleanup. All cleanup done. Fri Nov 22 07:36:30 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-upbXhAe7, removing. /srv/reproducible-results/rbuild-debian/r-b-build.UDFeObXr: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 07:36 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 07:36 b2 -rw-r--r-- 1 jenkins jenkins 2047 Feb 1 2023 metaphlan_4.0.4-1.dsc -rw------- 1 jenkins jenkins 3159 Nov 22 07:36 rbuildlog.qxNkfFm /srv/reproducible-results/rbuild-debian/r-b-build.UDFeObXr/b1: total 12 -rw-r--r-- 1 jenkins jenkins 10885 Nov 22 07:36 build.log /srv/reproducible-results/rbuild-debian/r-b-build.UDFeObXr/b2: total 0 Fri Nov 22 07:36:30 UTC 2024 I: Deleting $TMPDIR on infom07-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Nov 21 19:36:03 -12 2024 I: pbuilder-time-stamp: 1732260963 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [metaphlan_4.0.4-1.dsc] I: copying [./metaphlan_4.0.4.orig.tar.gz] I: copying [./metaphlan_4.0.4-1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Feb 1 14:15:43 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./metaphlan_4.0.4-1.dsc: no acceptable signature found dpkg-source: info: extracting metaphlan in metaphlan-4.0.4 dpkg-source: info: unpacking metaphlan_4.0.4.orig.tar.gz dpkg-source: info: unpacking metaphlan_4.0.4-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/8509/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='43bb25cb06b445469501ff73dd55f237' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='8509' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UDFeObXr/pbuilderrc_Uo9L --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UDFeObXr/b1 --logfile b1/build.log metaphlan_4.0.4-1.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom07-i386 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/8509/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), python3, dh-python, pandoc, bowtie2, python3-setuptools, python3-biopython dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19952 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on pandoc; however: Package pandoc is not installed. pbuilder-satisfydepends-dummy depends on bowtie2; however: Package bowtie2 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} liblerc4{a} liblua5.4-0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libnuma1{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} pandoc{a} pandoc-data{a} po-debconf{a} python3{a} python3-autocommand{a} python3-biopython{a} python3-cairo{a} python3-chardet{a} python3-freetype{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile shared-mime-info wget xdg-user-dirs 0 packages upgraded, 122 newly installed, 0 to remove and 0 not upgraded. Need to get 99.8 MB of archives. After unpacking 512 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: bowtie2 which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} liblerc4{a} liblua5.4-0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libnuma1{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} pandoc{a} pandoc-data{a} po-debconf{a} python3{a} python3-autocommand{a} python3-biopython{a} python3-cairo{a} python3-chardet{a} python3-freetype{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile shared-mime-info wget xdg-user-dirs 0 packages upgraded, 122 newly installed, 0 to remove and 0 not upgraded. Need to get 99.8 MB of archives. After unpacking 512 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/8509 and its subdirectories metaphlan failed to build from source. removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/metaphlan_4.0.4-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/metaphlan_4.0.4-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/metaphlan_4.0.4-1.build1.log.gz' Fri Nov 22 07:36:31 UTC 2024 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 69.8% -- replaced with stdout Fri Nov 22 07:36:32 UTC 2024 W: Downloading the build dependencies failed Fri Nov 22 07:36:32 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Fri Nov 22 07:36:32 UTC 2024 W: Network problems are automatically rescheduled after some hours. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-22 07:36:32] INFO: Starting at 2024-11-22 07:36:32.690350 [2024-11-22 07:36:32] INFO: Generating the pages of 1 package(s) [2024-11-22 07:36:33] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/metaphlan_4.0.4-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/metaphlan_4.0.4-1.diff.gz is missing [2024-11-22 07:36:33] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/i386/metaphlan didn't produce a buildlog, even though it has been built. [2024-11-22 07:36:33] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/metaphlan_4.0.4-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/metaphlan_4.0.4-1.diff.gz is missing [2024-11-22 07:36:33] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/metaphlan_4.0.4-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/metaphlan_4.0.4-1.diff.gz is missing [2024-11-22 07:36:33] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/metaphlan_4.0.4-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/metaphlan_4.0.4-1.diff.gz is missing [2024-11-22 07:36:33] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/metaphlan_4.0.4-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/metaphlan_4.0.4-1.diff.gz is missing [2024-11-22 07:36:33] INFO: Finished at 2024-11-22 07:36:33.248427, took: 0:00:00.558082 Fri Nov 22 07:36:33 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/i386/metaphlan.html Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/metaphlan_4.0.4-1.rbuild.log: 65.0% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/metaphlan_4.0.4-1.rbuild.log.gz [2024-11-22 07:36:33] INFO: Starting at 2024-11-22 07:36:33.649929 [2024-11-22 07:36:33] INFO: Generating the pages of 1 package(s) [2024-11-22 07:36:33] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/metaphlan_4.0.4-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/metaphlan_4.0.4-1.diff.gz is missing [2024-11-22 07:36:33] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/metaphlan_4.0.4-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/metaphlan_4.0.4-1.diff.gz is missing [2024-11-22 07:36:34] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/metaphlan_4.0.4-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/metaphlan_4.0.4-1.diff.gz is missing [2024-11-22 07:36:34] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/metaphlan_4.0.4-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/metaphlan_4.0.4-1.diff.gz is missing [2024-11-22 07:36:34] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/metaphlan_4.0.4-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/metaphlan_4.0.4-1.diff.gz is missing [2024-11-22 07:36:34] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/metaphlan_4.0.4-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/metaphlan_4.0.4-1.diff.gz is missing [2024-11-22 07:36:34] INFO: Finished at 2024-11-22 07:36:34.092495, took: 0:00:00.442572 All cleanup done. Fri Nov 22 07:36:34 UTC 2024 - total duration: 0h 0m 50s. Fri Nov 22 07:36:34 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-vdJ7d9QF, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 51.945s CPU time consumed: 5.338s