Running as unit: rb-build-i386_13-51314.service ==================================================================================== Fri Nov 22 07:44:08 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_i386_13) on jenkins, called using "infom07-i386 infom08-i386" as arguments. Fri Nov 22 07:44:08 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-JwaZzRVB" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Nov 22 07:44:08 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom07-i386.debian.net is marked as down. Fri Nov 22 07:44:08 UTC 2024 - checking via ssh if infom07-i386.debian.net is up. removed '/tmp/read-only-fs-test-ItN4JO' Fri Nov 22 07:44:08 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom08-i386.debian.net is marked as down. Fri Nov 22 07:44:08 UTC 2024 - checking via ssh if infom08-i386.debian.net is up. removed '/tmp/read-only-fs-test-Pqewvw' ok, let's check if q2-quality-control is building anywhere yet… ok, q2-quality-control is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of q2-quality-control in bookworm on i386 on jenkins now. 1st build will be done on infom07-i386.debian.net. 2nd build will be done on infom08-i386.debian.net. ============================================================================= Fri Nov 22 07:44:22 UTC 2024 I: starting to build q2-quality-control/bookworm/i386 on jenkins on '2024-11-22 07:44' Fri Nov 22 07:44:22 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_13/51314/console.log 1732261462 i386 bookworm q2-quality-control Fri Nov 22 07:44:22 UTC 2024 I: Downloading source for bookworm/q2-quality-control=2022.11.1-2 --2024-11-22 07:44:22-- http://cdn-fastly.deb.debian.org/debian/pool/main/q/q2-quality-control/q2-quality-control_2022.11.1-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2680 (2.6K) [text/prs.lines.tag] Saving to: ‘q2-quality-control_2022.11.1-2.dsc’ 0K .. 100% 265M=0s 2024-11-22 07:44:22 (265 MB/s) - ‘q2-quality-control_2022.11.1-2.dsc’ saved [2680/2680] --2024-11-22 07:44:22-- http://cdn-fastly.deb.debian.org/debian/pool/main/q/q2-quality-control/q2-quality-control_2022.11.1-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2680 (2.6K) [text/prs.lines.tag] Saving to: ‘q2-quality-control_2022.11.1-2.dsc’ 0K .. 100% 265M=0s 2024-11-22 07:44:22 (265 MB/s) - ‘q2-quality-control_2022.11.1-2.dsc’ saved [2680/2680] Fri Nov 22 07:44:22 UTC 2024 I: q2-quality-control_2022.11.1-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: q2-quality-control Binary: q2-quality-control Architecture: all Version: 2022.11.1-2 Maintainer: Debian Med Packaging Team Uploaders: Liubov Chuprikova , Steffen Moeller , Étienne Mollier Homepage: https://qiime2.org/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/q2-quality-control Vcs-Git: https://salsa.debian.org/med-team/q2-quality-control.git Testsuite: autopkgtest Testsuite-Triggers: python3-pytest-cov Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-pytest-cov , python3-biom-format , python3-h5py , python3-numpy , python3-pandas , python3-scipy , python3-seaborn , qiime (>= 2022.11.1) , q2templates (>= 2022.11.1) , q2-taxa (>= 2022.11.1) , q2-feature-table (>= 2022.11.1) , bowtie2 , ncbi-blast+ , samtools , vsearch Package-List: q2-quality-control deb science optional arch=all Checksums-Sha1: 42dbe24b485726b9f0d2402d0db5ed49434848c4 495291 q2-quality-control_2022.11.1.orig.tar.gz dcebf4db22a64968aad3b9f6298913b51acb75fa 5512 q2-quality-control_2022.11.1-2.debian.tar.xz Checksums-Sha256: e7ef298efe0d22a0728feaf255e84e033d835e20c4b207a509474fd59b01d1d1 495291 q2-quality-control_2022.11.1.orig.tar.gz 53c1b47d0e1076b72111caba7d815335d63b14895de98416ab5aeffeccf5ab38 5512 q2-quality-control_2022.11.1-2.debian.tar.xz Files: 9187a4272a60566f8ea67b3a8fe26dcc 495291 q2-quality-control_2022.11.1.orig.tar.gz 86daa6fb8aaaed8fa9d3409e09c12527 5512 q2-quality-control_2022.11.1-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmPQHwERHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHXAg/7BVWbiwQiwy0Mgelq2jIzXpddosIJ68ob JbZvUIca9LGWOuNEZjJwKsr2mwcazf3BCzJPSssbTehIKgRUUFU2jXEGBaW4l+m5 qkXMNENYFy3cpn2AVfA6L2ZP2/N1UotV3Epc5/gyCaGUacCwu/7LqctZf+e1QgzD YHIcmYTc4rGdQgvFp5+dx64An+3QMXqoH3/cP65BPDr9TjFTOgqO316+8bC0nZmq Vgg5NY9I81NNMCYF4kVTwnZ6hHxPEx7/ijYiJWfgSyiOXu5Ahx3pmN/PKgsNKChM l+r9lnYHC71P4H61I0prtR+KW+wcfeuZ52dQ7ZEvB1313YAr3iVyF4JTb/+sQWBO d7PdNc36jw0QZYYsUxq1r0wzRrlYOpLYPb5tb5phnv+RNXWz1DRib/dkK6sCUbKC cyz0Ngohe3WoT4cGqiKGrWi7EAPkZrt52l7blK3D71ioV2vS+bv8zGY04mE+6WsU a2RVEduMY/dLh4ceErk24BDSJ+IEoZaqtkrAWN2680fGJ77OtGaQXFEbOW1lPydL Ry6KqooCDV8wwiRQera8AgxtOsiNBQUxIiRNCap++gB2ZGRAdWZnaY4KhGwpBxgP uv07Xs0AxyFpl42c6InD9jvsLjMnfiISgIcwWY+v4QiPBqypA7a8Gvp2J78E1dlS ShDe5Lhj3sI= =HQQB -----END PGP SIGNATURE----- Fri Nov 22 07:44:22 UTC 2024 I: Checking whether the package is not for us Fri Nov 22 07:44:22 UTC 2024 I: Starting 1st build on remote node infom07-i386.debian.net. Fri Nov 22 07:44:22 UTC 2024 I: Preparing to do remote build '1' on infom07-i386.debian.net. Fri Nov 22 07:44:22 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom07-i386.debian.net is marked as down. Fri Nov 22 07:44:22 UTC 2024 - checking via ssh if infom07-i386.debian.net is up. removed '/tmp/read-only-fs-test-ECrUAz' ==================================================================================== Fri Nov 22 07:44:24 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom07-i386, called using "1 q2-quality-control bookworm /srv/reproducible-results/rbuild-debian/r-b-build.RBUMb8or 2022.11.1-2" as arguments. Fri Nov 22 07:44:24 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-X5Vru4gu" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Nov 22 07:44:24 UTC 2024 I: Downloading source for bookworm/q2-quality-control=2022.11.1-2 Reading package lists... NOTICE: 'q2-quality-control' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/q2-quality-control.git Please use: git clone https://salsa.debian.org/med-team/q2-quality-control.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 503 kB of source archives. Get:1 http://deb.debian.org/debian bookworm/main q2-quality-control 2022.11.1-2 (dsc) [2680 B] Get:2 http://deb.debian.org/debian bookworm/main q2-quality-control 2022.11.1-2 (tar) [495 kB] Get:3 http://deb.debian.org/debian bookworm/main q2-quality-control 2022.11.1-2 (diff) [5512 B] Fetched 503 kB in 0s (4664 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'q2-quality-control' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/q2-quality-control.git Please use: git clone https://salsa.debian.org/med-team/q2-quality-control.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 503 kB of source archives. Get:1 http://deb.debian.org/debian bookworm/main q2-quality-control 2022.11.1-2 (dsc) [2680 B] Get:2 http://deb.debian.org/debian bookworm/main q2-quality-control 2022.11.1-2 (tar) [495 kB] Get:3 http://deb.debian.org/debian bookworm/main q2-quality-control 2022.11.1-2 (diff) [5512 B] Fetched 503 kB in 0s (4664 kB/s) Download complete and in download only mode ============================================================================= Building q2-quality-control in bookworm on i386 on infom07-i386 now. Date: Fri Nov 22 07:44:24 UTC 2024 Date UTC: Fri Nov 22 07:44:24 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Nov 21 19:44:24 -12 2024 I: pbuilder-time-stamp: 1732261464 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [q2-quality-control_2022.11.1-2.dsc] I: copying [./q2-quality-control_2022.11.1.orig.tar.gz] I: copying [./q2-quality-control_2022.11.1-2.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Jan 24 06:10:09 2023 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./q2-quality-control_2022.11.1-2.dsc: no acceptable signature found dpkg-source: info: extracting q2-quality-control in q2-quality-control-2022.11.1 dpkg-source: info: unpacking q2-quality-control_2022.11.1.orig.tar.gz dpkg-source: info: unpacking q2-quality-control_2022.11.1-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/12887/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='2ddb533308f642389ce24ff1bacb1ad7' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='12887' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RBUMb8or/pbuilderrc_sOHq --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RBUMb8or/b1 --logfile b1/build.log q2-quality-control_2022.11.1-2.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom07-i386 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Mar 29 2024 bash -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 2023 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Oct 18 00:56 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 84272 Oct 18 00:56 findmnt -rwsr-xr-x 1 root root 30240 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 22 2023 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Oct 18 00:56 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Oct 18 00:56 more -rwsr-xr-x 1 root root 58912 Oct 18 00:56 mount -rwxr-xr-x 1 root root 13856 Oct 18 00:56 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Mar 29 2024 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Jul 28 2023 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Oct 18 00:56 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Jan 19 2024 tar -rwxr-xr-x 1 root root 13860 Jul 28 2023 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 30236 Oct 18 00:56 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Oct 18 00:56 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/12887/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-pytest-cov, python3-biom-format, python3-h5py, python3-numpy, python3-pandas, python3-scipy, python3-seaborn, qiime (>= 2022.11.1), q2templates (>= 2022.11.1), q2-taxa (>= 2022.11.1), q2-feature-table (>= 2022.11.1), bowtie2, ncbi-blast+, samtools, vsearch dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19554 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-cov; however: Package python3-pytest-cov is not installed. pbuilder-satisfydepends-dummy depends on python3-biom-format; however: Package python3-biom-format is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-seaborn; however: Package python3-seaborn is not installed. pbuilder-satisfydepends-dummy depends on qiime (>= 2022.11.1); however: Package qiime is not installed. pbuilder-satisfydepends-dummy depends on q2templates (>= 2022.11.1); however: Package q2templates is not installed. pbuilder-satisfydepends-dummy depends on q2-taxa (>= 2022.11.1); however: Package q2-taxa is not installed. pbuilder-satisfydepends-dummy depends on q2-feature-table (>= 2022.11.1); however: Package q2-feature-table is not installed. pbuilder-satisfydepends-dummy depends on bowtie2; however: Package bowtie2 is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+; however: Package ncbi-blast+ is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on vsearch; however: Package vsearch is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-glyphicons-halflings{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libcurl3-gnutls{a} libcurl4{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhdf5-103-1{a} libhdf5-hl-100{a} libhts3{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-bootstrap{a} libjs-jquery{a} libjs-jquery-hotkeys{a} libjs-jquery-isonscreen{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-throttle-debounce{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblmdb0{a} liblzf1{a} libmagic-mgc{a} libmagic1{a} libmbedcrypto7{a} libmbedtls14{a} libmbedx509-1{a} libncurses6{a} libnghttp2-14{a} libopenblas-dev{a} libopenblas-pthread-dev{a} libopenblas0{a} libopenblas0-pthread{a} libopenjp2-7{a} libpcre3{a} libpipeline1{a} libpng16-16{a} libpsl5{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libsz2{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxsimd-dev{a} libxslt1.1{a} libxss1{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} ncbi-blast+{a} ncbi-data{a} node-normalize.css{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-attr{a} python3-beniget{a} python3-bibtexparser{a} python3-biom-format{a} python3-brotli{a} python3-click{a} python3-colorama{a} python3-contourpy{a} python3-coverage{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-dill{a} python3-distutils{a} python3-flufl.lock{a} python3-fonttools{a} python3-fs{a} python3-future{a} python3-gast{a} python3-h5py{a} python3-h5py-serial{a} python3-iniconfig{a} python3-jinja2{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-markupsafe{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-networkx{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pluggy{a} python3-ply{a} python3-psutil{a} python3-public{a} python3-py{a} python3-pyparsing{a} python3-pytest{a} python3-pytest-cov{a} python3-pythran{a} python3-pytz-deprecation-shim{a} python3-scipy{a} python3-seaborn{a} python3-setuptools{a} python3-six{a} python3-sympy{a} python3-tk{a} python3-tz{a} python3-tzlocal{a} python3-ufolib2{a} python3-yaml{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} q2templates{a} qiime{a} readline-common{a} samtools{a} sensible-utils{a} tk8.6-blt2.5{a} unicode-data{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-babel python3-bottleneck python3-bs4 python3-gdal python3-html5lib python3-numexpr python3-odf python3-olefile python3-openpyxl python3-patsy python3-pydot python3-pygments python3-pygraphviz python3-tables q2-demux q2-feature-classifier q2-quality-filter q2cli shared-mime-info wget xdg-user-dirs 0 packages upgraded, 206 newly installed, 0 to remove and 0 not upgraded. Need to get 152 MB of archives. After unpacking 768 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: q2-taxa (>= 2022.11.1) but it is not installable Depends: q2-feature-table (>= 2022.11.1) but it is not installable Depends: bowtie2 which is a virtual package and is not provided by any available package Depends: vsearch which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-glyphicons-halflings{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libcurl3-gnutls{a} libcurl4{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhdf5-103-1{a} libhdf5-hl-100{a} libhts3{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-bootstrap{a} libjs-jquery{a} libjs-jquery-hotkeys{a} libjs-jquery-isonscreen{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-throttle-debounce{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblmdb0{a} liblzf1{a} libmagic-mgc{a} libmagic1{a} libmbedcrypto7{a} libmbedtls14{a} libmbedx509-1{a} libncurses6{a} libnghttp2-14{a} libopenblas-dev{a} libopenblas-pthread-dev{a} libopenblas0{a} libopenblas0-pthread{a} libopenjp2-7{a} libpcre3{a} libpipeline1{a} libpng16-16{a} libpsl5{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libsz2{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxsimd-dev{a} libxslt1.1{a} libxss1{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} ncbi-blast+{a} ncbi-data{a} node-normalize.css{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-attr{a} python3-beniget{a} python3-bibtexparser{a} python3-biom-format{a} python3-brotli{a} python3-click{a} python3-colorama{a} python3-contourpy{a} python3-coverage{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-dill{a} python3-distutils{a} python3-flufl.lock{a} python3-fonttools{a} python3-fs{a} python3-future{a} python3-gast{a} python3-h5py{a} python3-h5py-serial{a} python3-iniconfig{a} python3-jinja2{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-markupsafe{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-networkx{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pluggy{a} python3-ply{a} python3-psutil{a} python3-public{a} python3-py{a} python3-pyparsing{a} python3-pytest{a} python3-pytest-cov{a} python3-pythran{a} python3-pytz-deprecation-shim{a} python3-scipy{a} python3-seaborn{a} python3-setuptools{a} python3-six{a} python3-sympy{a} python3-tk{a} python3-tz{a} python3-tzlocal{a} python3-ufolib2{a} python3-yaml{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} q2templates{a} qiime{a} readline-common{a} samtools{a} sensible-utils{a} tk8.6-blt2.5{a} unicode-data{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-babel python3-bottleneck python3-bs4 python3-gdal python3-html5lib python3-numexpr python3-odf python3-olefile python3-openpyxl python3-patsy python3-pydot python3-pygments python3-pygraphviz python3-tables q2-demux q2-feature-classifier q2-quality-filter q2cli shared-mime-info wget xdg-user-dirs 0 packages upgraded, 206 newly installed, 0 to remove and 0 not upgraded. Need to get 152 MB of archives. After unpacking 768 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/12887 and its subdirectories Starting cleanup. All cleanup done. Fri Nov 22 07:44:36 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-X5Vru4gu, removing. /srv/reproducible-results/rbuild-debian/r-b-build.RBUMb8or: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 07:44 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 07:44 b2 -rw-r--r-- 1 jenkins jenkins 2680 Jan 24 2023 q2-quality-control_2022.11.1-2.dsc -rw------- 1 jenkins jenkins 3886 Nov 22 07:44 rbuildlog.pBLpmz8 /srv/reproducible-results/rbuild-debian/r-b-build.RBUMb8or/b1: total 24 -rw-r--r-- 1 jenkins jenkins 20860 Nov 22 07:44 build.log /srv/reproducible-results/rbuild-debian/r-b-build.RBUMb8or/b2: total 0 Fri Nov 22 07:44:37 UTC 2024 I: Deleting $TMPDIR on infom07-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Nov 21 19:44:24 -12 2024 I: pbuilder-time-stamp: 1732261464 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [q2-quality-control_2022.11.1-2.dsc] I: copying [./q2-quality-control_2022.11.1.orig.tar.gz] I: copying [./q2-quality-control_2022.11.1-2.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Jan 24 06:10:09 2023 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./q2-quality-control_2022.11.1-2.dsc: no acceptable signature found dpkg-source: info: extracting q2-quality-control in q2-quality-control-2022.11.1 dpkg-source: info: unpacking q2-quality-control_2022.11.1.orig.tar.gz dpkg-source: info: unpacking q2-quality-control_2022.11.1-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/12887/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='2ddb533308f642389ce24ff1bacb1ad7' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='12887' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RBUMb8or/pbuilderrc_sOHq --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RBUMb8or/b1 --logfile b1/build.log q2-quality-control_2022.11.1-2.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom07-i386 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Mar 29 2024 bash -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 2023 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Oct 18 00:56 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 84272 Oct 18 00:56 findmnt -rwsr-xr-x 1 root root 30240 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 22 2023 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Oct 18 00:56 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Oct 18 00:56 more -rwsr-xr-x 1 root root 58912 Oct 18 00:56 mount -rwxr-xr-x 1 root root 13856 Oct 18 00:56 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Mar 29 2024 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Jul 28 2023 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Oct 18 00:56 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Jan 19 2024 tar -rwxr-xr-x 1 root root 13860 Jul 28 2023 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 30236 Oct 18 00:56 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Oct 18 00:56 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/12887/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-pytest-cov, python3-biom-format, python3-h5py, python3-numpy, python3-pandas, python3-scipy, python3-seaborn, qiime (>= 2022.11.1), q2templates (>= 2022.11.1), q2-taxa (>= 2022.11.1), q2-feature-table (>= 2022.11.1), bowtie2, ncbi-blast+, samtools, vsearch dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19554 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-cov; however: Package python3-pytest-cov is not installed. pbuilder-satisfydepends-dummy depends on python3-biom-format; however: Package python3-biom-format is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-seaborn; however: Package python3-seaborn is not installed. pbuilder-satisfydepends-dummy depends on qiime (>= 2022.11.1); however: Package qiime is not installed. pbuilder-satisfydepends-dummy depends on q2templates (>= 2022.11.1); however: Package q2templates is not installed. pbuilder-satisfydepends-dummy depends on q2-taxa (>= 2022.11.1); however: Package q2-taxa is not installed. pbuilder-satisfydepends-dummy depends on q2-feature-table (>= 2022.11.1); however: Package q2-feature-table is not installed. pbuilder-satisfydepends-dummy depends on bowtie2; however: Package bowtie2 is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+; however: Package ncbi-blast+ is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on vsearch; however: Package vsearch is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-glyphicons-halflings{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libcurl3-gnutls{a} libcurl4{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhdf5-103-1{a} libhdf5-hl-100{a} libhts3{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-bootstrap{a} libjs-jquery{a} libjs-jquery-hotkeys{a} libjs-jquery-isonscreen{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-throttle-debounce{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblmdb0{a} liblzf1{a} libmagic-mgc{a} libmagic1{a} libmbedcrypto7{a} libmbedtls14{a} libmbedx509-1{a} libncurses6{a} libnghttp2-14{a} libopenblas-dev{a} libopenblas-pthread-dev{a} libopenblas0{a} libopenblas0-pthread{a} libopenjp2-7{a} libpcre3{a} libpipeline1{a} libpng16-16{a} libpsl5{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libsz2{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxsimd-dev{a} libxslt1.1{a} libxss1{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} ncbi-blast+{a} ncbi-data{a} node-normalize.css{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-attr{a} python3-beniget{a} python3-bibtexparser{a} python3-biom-format{a} python3-brotli{a} python3-click{a} python3-colorama{a} python3-contourpy{a} python3-coverage{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-dill{a} python3-distutils{a} python3-flufl.lock{a} python3-fonttools{a} python3-fs{a} python3-future{a} python3-gast{a} python3-h5py{a} python3-h5py-serial{a} python3-iniconfig{a} python3-jinja2{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-markupsafe{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-networkx{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pluggy{a} python3-ply{a} python3-psutil{a} python3-public{a} python3-py{a} python3-pyparsing{a} python3-pytest{a} python3-pytest-cov{a} python3-pythran{a} python3-pytz-deprecation-shim{a} python3-scipy{a} python3-seaborn{a} python3-setuptools{a} python3-six{a} python3-sympy{a} python3-tk{a} python3-tz{a} python3-tzlocal{a} python3-ufolib2{a} python3-yaml{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} q2templates{a} qiime{a} readline-common{a} samtools{a} sensible-utils{a} tk8.6-blt2.5{a} unicode-data{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-babel python3-bottleneck python3-bs4 python3-gdal python3-html5lib python3-numexpr python3-odf python3-olefile python3-openpyxl python3-patsy python3-pydot python3-pygments python3-pygraphviz python3-tables q2-demux q2-feature-classifier q2-quality-filter q2cli shared-mime-info wget xdg-user-dirs 0 packages upgraded, 206 newly installed, 0 to remove and 0 not upgraded. Need to get 152 MB of archives. After unpacking 768 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: q2-taxa (>= 2022.11.1) but it is not installable Depends: q2-feature-table (>= 2022.11.1) but it is not installable Depends: bowtie2 which is a virtual package and is not provided by any available package Depends: vsearch which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-glyphicons-halflings{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libcurl3-gnutls{a} libcurl4{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhdf5-103-1{a} libhdf5-hl-100{a} libhts3{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-bootstrap{a} libjs-jquery{a} libjs-jquery-hotkeys{a} libjs-jquery-isonscreen{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-throttle-debounce{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblmdb0{a} liblzf1{a} libmagic-mgc{a} libmagic1{a} libmbedcrypto7{a} libmbedtls14{a} libmbedx509-1{a} libncurses6{a} libnghttp2-14{a} libopenblas-dev{a} libopenblas-pthread-dev{a} libopenblas0{a} libopenblas0-pthread{a} libopenjp2-7{a} libpcre3{a} libpipeline1{a} libpng16-16{a} libpsl5{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libsz2{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxsimd-dev{a} libxslt1.1{a} libxss1{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} ncbi-blast+{a} ncbi-data{a} node-normalize.css{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-attr{a} python3-beniget{a} python3-bibtexparser{a} python3-biom-format{a} python3-brotli{a} python3-click{a} python3-colorama{a} python3-contourpy{a} python3-coverage{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-dill{a} python3-distutils{a} python3-flufl.lock{a} python3-fonttools{a} python3-fs{a} python3-future{a} python3-gast{a} python3-h5py{a} python3-h5py-serial{a} python3-iniconfig{a} python3-jinja2{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-markupsafe{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-networkx{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pluggy{a} python3-ply{a} python3-psutil{a} python3-public{a} python3-py{a} python3-pyparsing{a} python3-pytest{a} python3-pytest-cov{a} python3-pythran{a} python3-pytz-deprecation-shim{a} python3-scipy{a} python3-seaborn{a} python3-setuptools{a} python3-six{a} python3-sympy{a} python3-tk{a} python3-tz{a} python3-tzlocal{a} python3-ufolib2{a} python3-yaml{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} q2templates{a} qiime{a} readline-common{a} samtools{a} sensible-utils{a} tk8.6-blt2.5{a} unicode-data{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-babel python3-bottleneck python3-bs4 python3-gdal python3-html5lib python3-numexpr python3-odf python3-olefile python3-openpyxl python3-patsy python3-pydot python3-pygments python3-pygraphviz python3-tables q2-demux q2-feature-classifier q2-quality-filter q2cli shared-mime-info wget xdg-user-dirs 0 packages upgraded, 206 newly installed, 0 to remove and 0 not upgraded. Need to get 152 MB of archives. After unpacking 768 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/12887 and its subdirectories q2-quality-control failed to build from source. removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/bookworm/i386/q2-quality-control_2022.11.1-2.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/bookworm/i386/q2-quality-control_2022.11.1-2.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/q2-quality-control_2022.11.1-2.build1.log.gz' Fri Nov 22 07:44:38 UTC 2024 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 76.1% -- replaced with stdout Fri Nov 22 07:44:38 UTC 2024 W: Downloading the build dependencies failed Fri Nov 22 07:44:38 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Fri Nov 22 07:44:38 UTC 2024 W: Network problems are automatically rescheduled after some hours. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-22 07:44:39] INFO: Starting at 2024-11-22 07:44:39.325672 [2024-11-22 07:44:39] INFO: Generating the pages of 1 package(s) [2024-11-22 07:44:39] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/q2-quality-control_2024.5.0-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/q2-quality-control_2024.5.0-1.diff.gz is missing [2024-11-22 07:44:39] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/q2-quality-control_2024.5.0-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/q2-quality-control_2024.5.0-1.diff.gz is missing [2024-11-22 07:44:39] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/q2-quality-control_2024.5.0-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/q2-quality-control_2024.5.0-1.diff.gz is missing [2024-11-22 07:44:39] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/q2-quality-control_2022.11.1-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/q2-quality-control_2022.11.1-2.diff.gz is missing [2024-11-22 07:44:39] CRITICAL: https://tests.reproducible-builds.org/debian/bookworm/i386/q2-quality-control didn't produce a buildlog, even though it has been built. [2024-11-22 07:44:39] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/q2-quality-control_2020.11.1-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/q2-quality-control_2020.11.1-3.diff.gz is missing [2024-11-22 07:44:39] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/q2-quality-control_2020.11.1-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/q2-quality-control_2020.11.1-3.diff.gz is missing [2024-11-22 07:44:39] INFO: Finished at 2024-11-22 07:44:39.975872, took: 0:00:00.650204 Fri Nov 22 07:44:40 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/bookworm/i386/q2-quality-control.html Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/bookworm/i386/q2-quality-control_2022.11.1-2.rbuild.log: 72.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/bookworm/i386/q2-quality-control_2022.11.1-2.rbuild.log.gz [2024-11-22 07:44:40] INFO: Starting at 2024-11-22 07:44:40.381717 [2024-11-22 07:44:40] INFO: Generating the pages of 1 package(s) [2024-11-22 07:44:40] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/q2-quality-control_2024.5.0-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/q2-quality-control_2024.5.0-1.diff.gz is missing [2024-11-22 07:44:40] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/q2-quality-control_2024.5.0-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/q2-quality-control_2024.5.0-1.diff.gz is missing [2024-11-22 07:44:40] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/q2-quality-control_2024.5.0-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/q2-quality-control_2024.5.0-1.diff.gz is missing [2024-11-22 07:44:40] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/q2-quality-control_2022.11.1-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/q2-quality-control_2022.11.1-2.diff.gz is missing [2024-11-22 07:44:40] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/q2-quality-control_2022.11.1-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/q2-quality-control_2022.11.1-2.diff.gz is missing [2024-11-22 07:44:41] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/q2-quality-control_2020.11.1-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/q2-quality-control_2020.11.1-3.diff.gz is missing [2024-11-22 07:44:41] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/q2-quality-control_2020.11.1-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/q2-quality-control_2020.11.1-3.diff.gz is missing [2024-11-22 07:44:41] INFO: Finished at 2024-11-22 07:44:41.017757, took: 0:00:00.636044 All cleanup done. Fri Nov 22 07:44:41 UTC 2024 - total duration: 0h 0m 30s. Fri Nov 22 07:44:41 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-JwaZzRVB, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 33.037s CPU time consumed: 5.544s