Running as unit: rb-build-i386_14-52498.service ==================================================================================== Mon Nov 25 08:45:35 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_i386_14) on jenkins, called using "infom08-i386 infom07-i386" as arguments. Mon Nov 25 08:45:35 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-GR7uTiFJ" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Nov 25 08:45:35 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom08-i386.debian.net is marked as down. Mon Nov 25 08:45:35 UTC 2024 - checking via ssh if infom08-i386.debian.net is up. removed '/tmp/read-only-fs-test-2WWnbF' Mon Nov 25 08:45:35 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom07-i386.debian.net is marked as down. Mon Nov 25 08:45:35 UTC 2024 - checking via ssh if infom07-i386.debian.net is up. removed '/tmp/read-only-fs-test-RKu0qc' ok, let's check if metaphlan2 is building anywhere yet… ok, metaphlan2 is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of metaphlan2 in bullseye on i386 on jenkins now. 1st build will be done on infom08-i386.debian.net. 2nd build will be done on infom07-i386.debian.net. ============================================================================= Mon Nov 25 08:45:59 UTC 2024 I: starting to build metaphlan2/bullseye/i386 on jenkins on '2024-11-25 08:45' Mon Nov 25 08:45:59 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_14/52498/console.log 1732524359 i386 bullseye metaphlan2 Mon Nov 25 08:45:59 UTC 2024 I: Downloading source for bullseye/metaphlan2=2.9.22-1 --2024-11-25 08:46:00-- http://cdn-fastly.deb.debian.org/debian/pool/main/m/metaphlan2/metaphlan2_2.9.22-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2023 (2.0K) [text/prs.lines.tag] Saving to: ‘metaphlan2_2.9.22-1.dsc’ 0K . 100% 276M=0s 2024-11-25 08:46:00 (276 MB/s) - ‘metaphlan2_2.9.22-1.dsc’ saved [2023/2023] --2024-11-25 08:46:00-- http://cdn-fastly.deb.debian.org/debian/pool/main/m/metaphlan2/metaphlan2_2.9.22-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2023 (2.0K) [text/prs.lines.tag] Saving to: ‘metaphlan2_2.9.22-1.dsc’ 0K . 100% 276M=0s 2024-11-25 08:46:00 (276 MB/s) - ‘metaphlan2_2.9.22-1.dsc’ saved [2023/2023] Mon Nov 25 08:46:00 UTC 2024 I: metaphlan2_2.9.22-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: metaphlan2 Binary: metaphlan2 Architecture: all Version: 2.9.22-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://bitbucket.org/biobakery/metaphlan2 Standards-Version: 4.4.1 Vcs-Browser: https://salsa.debian.org/med-team/metaphlan2 Vcs-Git: https://salsa.debian.org/med-team/metaphlan2.git Build-Depends: debhelper-compat (= 12), python3-all, dh-python, pandoc, bowtie2 Package-List: metaphlan2 deb science optional arch=all Checksums-Sha1: e23f8cc139ab857fe00c2fc09ce4b7d174aeb793 157286 metaphlan2_2.9.22.orig.tar.bz2 203437b522e7c839b435308fb6f6ff906c15ec5f 462020 metaphlan2_2.9.22-1.debian.tar.xz Checksums-Sha256: 09adf5068c057f5711cba054312f63bf921403322d402c69233d7f0315e6f5ee 157286 metaphlan2_2.9.22.orig.tar.bz2 9d1986e355831cababd46d8ac46b2c4fa3dcff24f4c32308b5fb9b52ec7dfb22 462020 metaphlan2_2.9.22-1.debian.tar.xz Files: 0b7b5d066813648354584269a1c2e686 157286 metaphlan2_2.9.22.orig.tar.bz2 d2eb76b2a500a3283cb244b1a8a635ee 462020 metaphlan2_2.9.22-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl3FEhgRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGuAQ/9GjDMZSHL2fXNoxjuykBLq5wzXJ8sg4AU rYlHo5LrMiEa54YTHgzVbWAMcyn3YKPXvFHysSKRwnzIISIa85rlGQOjgDj+ZjxU 6gOThXu8ZVgmWnpAv9gjSdDLyKIRZHbbxmdHrzQxvZOVtN7+jt0UD4g1LkLg6EVP zZBzzFrI92vb2BUn7qVvjYATn5jOcKSDCgwiZJB0NU+pc+bzR5gFn0XzhiPwsZS4 jTRptU0VPAHBoxAzh5Zx/ALhHPWOi+DXN9t+lsbsxs34Q7sjYSrxSW9hDU2hhOqq zkINs4iYkiVKbDVvySqAYM4d2C8uun2Yr5KUVaQosP6ULSdX2rj+ZoIuTHuVkuJk ckN+kkJWDvehp/aNZtSb2uEbMLZVzSQobSKBZZen0U7BBBZWdyfSwcUcOdgdeM9i 77iu0lHRnSCxnUcOceo5oyTC625f1+lmh43J3ZwbqOw+MUg3Hwrnr1pAiJfhMZC5 h0w4DuGScpd7UeldloCFDb+5Aojt4JHqtw2/fmIeatAIVbMUzbYFVrby3dlLCyJ/ kRfb7n1VUKRhayLefmUXJZFeFm6KVDQ/fSDH9dFF1KmeGFeZVrQu0vK9pt2d2h2n iLmDxTzsLRN7VZmh1GsTNKVPacun+WK5JlOYNwRwqNCegMxXy6U0B+m/ocJc/Phd nG3PNgmvcGk= =4atq -----END PGP SIGNATURE----- Mon Nov 25 08:46:00 UTC 2024 I: Checking whether the package is not for us Mon Nov 25 08:46:00 UTC 2024 I: Starting 1st build on remote node infom08-i386.debian.net. Mon Nov 25 08:46:00 UTC 2024 I: Preparing to do remote build '1' on infom08-i386.debian.net. Mon Nov 25 08:46:00 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom08-i386.debian.net is marked as down. Mon Nov 25 08:46:00 UTC 2024 - checking via ssh if infom08-i386.debian.net is up. removed '/tmp/read-only-fs-test-QOpXzj' ==================================================================================== Sun Dec 28 15:09:01 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom08-i386, called using "1 metaphlan2 bullseye /srv/reproducible-results/rbuild-debian/r-b-build.FFUpuTHr 2.9.22-1" as arguments. Sun Dec 28 15:09:01 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-jAu0i6G9" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Dec 28 15:09:01 UTC 2025 I: Downloading source for bullseye/metaphlan2=2.9.22-1 Reading package lists... NOTICE: 'metaphlan2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/metaphlan2.git Please use: git clone https://salsa.debian.org/med-team/metaphlan2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 621 kB of source archives. Get:1 http://deb.debian.org/debian bullseye/main metaphlan2 2.9.22-1 (dsc) [2023 B] Get:2 http://deb.debian.org/debian bullseye/main metaphlan2 2.9.22-1 (tar) [157 kB] Get:3 http://deb.debian.org/debian bullseye/main metaphlan2 2.9.22-1 (diff) [462 kB] Fetched 621 kB in 0s (5170 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'metaphlan2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/metaphlan2.git Please use: git clone https://salsa.debian.org/med-team/metaphlan2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 621 kB of source archives. Get:1 http://deb.debian.org/debian bullseye/main metaphlan2 2.9.22-1 (dsc) [2023 B] Get:2 http://deb.debian.org/debian bullseye/main metaphlan2 2.9.22-1 (tar) [157 kB] Get:3 http://deb.debian.org/debian bullseye/main metaphlan2 2.9.22-1 (diff) [462 kB] Fetched 621 kB in 0s (5170 kB/s) Download complete and in download only mode ============================================================================= Building metaphlan2 in bullseye on i386 on infom08-i386 now. Date: Sun Dec 28 15:09:02 UTC 2025 Date UTC: Sun Dec 28 15:09:02 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Dec 28 03:09:02 -12 2025 I: pbuilder-time-stamp: 1766934542 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [metaphlan2_2.9.22-1.dsc] I: copying [./metaphlan2_2.9.22.orig.tar.bz2] I: copying [./metaphlan2_2.9.22-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.xaCZj6Kh/trustedkeys.kbx': General error gpgv: Signature made Thu Nov 7 18:58:32 2019 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./metaphlan2_2.9.22-1.dsc dpkg-source: info: extracting metaphlan2 in metaphlan2-2.9.22 dpkg-source: info: unpacking metaphlan2_2.9.22.orig.tar.bz2 dpkg-source: info: unpacking metaphlan2_2.9.22-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying mpa_dir-is-usr_share_metaphlan2.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying _metaphlan2.py.patch dpkg-source: info: applying python3.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1263/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=6 ' DISTRIBUTION='bullseye' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='5d9432ce128a4c15ba4b55785a81e39c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1263' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.FFUpuTHr/pbuilderrc_ssYQ --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.FFUpuTHr/b1 --logfile b1/build.log metaphlan2_2.9.22-1.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom08-i386 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin total 5772 -rwxr-xr-x 1 root root 1367848 Mar 27 2022 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Mar 27 2024 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Jan 24 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 71928 Mar 27 2024 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 210488 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Mar 27 2024 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Mar 27 2024 more -rwsr-xr-x 1 root root 50720 Mar 27 2024 mount -rwxr-xr-x 1 root root 13856 Mar 27 2024 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Dec 10 03:47 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Mar 27 2024 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 598488 Jan 19 2024 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 27 2024 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Mar 27 2024 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/1263/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), python3-all, dh-python, pandoc, bowtie2 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19730 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on pandoc; however: Package pandoc is not installed. pbuilder-satisfydepends-dummy depends on bowtie2; however: Package bowtie2 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcmark-gfm-extensions0{a} libcmark-gfm0{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libpipeline1{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} pandoc{a} pandoc-data{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 51 newly installed, 0 to remove and 0 not upgraded. Need to get 44.0 MB of archives. After unpacking 226 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: bowtie2 which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcmark-gfm-extensions0{a} libcmark-gfm0{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libpipeline1{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} pandoc{a} pandoc-data{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 51 newly installed, 0 to remove and 0 not upgraded. Need to get 44.0 MB of archives. After unpacking 226 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1263 and its subdirectories Starting cleanup. All cleanup done. Sun Dec 28 15:09:15 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-jAu0i6G9, removing. /srv/reproducible-results/rbuild-debian/r-b-build.FFUpuTHr: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 25 08:46 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 25 08:46 b2 -rw-r--r-- 1 jenkins jenkins 2023 Nov 8 2019 metaphlan2_2.9.22-1.dsc -rw------- 1 jenkins jenkins 3158 Nov 25 08:46 rbuildlog.c4jhmZI /srv/reproducible-results/rbuild-debian/r-b-build.FFUpuTHr/b1: total 16 -rw-r--r-- 1 jenkins jenkins 12832 Nov 25 08:46 build.log /srv/reproducible-results/rbuild-debian/r-b-build.FFUpuTHr/b2: total 0 Mon Nov 25 08:46:16 UTC 2024 I: Deleting $TMPDIR on infom08-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Dec 28 03:09:02 -12 2025 I: pbuilder-time-stamp: 1766934542 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [metaphlan2_2.9.22-1.dsc] I: copying [./metaphlan2_2.9.22.orig.tar.bz2] I: copying [./metaphlan2_2.9.22-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.xaCZj6Kh/trustedkeys.kbx': General error gpgv: Signature made Thu Nov 7 18:58:32 2019 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./metaphlan2_2.9.22-1.dsc dpkg-source: info: extracting metaphlan2 in metaphlan2-2.9.22 dpkg-source: info: unpacking metaphlan2_2.9.22.orig.tar.bz2 dpkg-source: info: unpacking metaphlan2_2.9.22-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying mpa_dir-is-usr_share_metaphlan2.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying _metaphlan2.py.patch dpkg-source: info: applying python3.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1263/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=6 ' DISTRIBUTION='bullseye' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='5d9432ce128a4c15ba4b55785a81e39c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1263' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.FFUpuTHr/pbuilderrc_ssYQ --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.FFUpuTHr/b1 --logfile b1/build.log metaphlan2_2.9.22-1.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom08-i386 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin total 5772 -rwxr-xr-x 1 root root 1367848 Mar 27 2022 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Mar 27 2024 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Jan 24 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 71928 Mar 27 2024 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 210488 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Mar 27 2024 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Mar 27 2024 more -rwsr-xr-x 1 root root 50720 Mar 27 2024 mount -rwxr-xr-x 1 root root 13856 Mar 27 2024 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Dec 10 03:47 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Mar 27 2024 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 598488 Jan 19 2024 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 27 2024 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Mar 27 2024 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/1263/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), python3-all, dh-python, pandoc, bowtie2 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19730 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on pandoc; however: Package pandoc is not installed. pbuilder-satisfydepends-dummy depends on bowtie2; however: Package bowtie2 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcmark-gfm-extensions0{a} libcmark-gfm0{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libpipeline1{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} pandoc{a} pandoc-data{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 51 newly installed, 0 to remove and 0 not upgraded. Need to get 44.0 MB of archives. After unpacking 226 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: bowtie2 which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcmark-gfm-extensions0{a} libcmark-gfm0{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libpipeline1{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} pandoc{a} pandoc-data{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 51 newly installed, 0 to remove and 0 not upgraded. Need to get 44.0 MB of archives. After unpacking 226 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1263 and its subdirectories metaphlan2 failed to build from source. removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/bullseye/i386/metaphlan2_2.9.22-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/bullseye/i386/metaphlan2_2.9.22-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/metaphlan2_2.9.22-1.build1.log.gz' Mon Nov 25 08:46:19 UTC 2024 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 70.7% -- replaced with stdout Mon Nov 25 08:46:19 UTC 2024 W: Downloading the build dependencies failed Mon Nov 25 08:46:19 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Mon Nov 25 08:46:19 UTC 2024 W: Network problems are automatically rescheduled after some hours. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-25 08:46:19] INFO: Starting at 2024-11-25 08:46:19.994542 [2024-11-25 08:46:20] INFO: Generating the pages of 1 package(s) [2024-11-25 08:46:21] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/metaphlan2_2.9.22-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/metaphlan2_2.9.22-1.diff.gz is missing [2024-11-25 08:46:21] CRITICAL: https://tests.reproducible-builds.org/debian/bullseye/i386/metaphlan2 didn't produce a buildlog, even though it has been built. [2024-11-25 08:46:21] INFO: Finished at 2024-11-25 08:46:21.630558, took: 0:00:01.636025 Mon Nov 25 08:46:21 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/bullseye/i386/metaphlan2.html Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/bullseye/i386/metaphlan2_2.9.22-1.rbuild.log: 66.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/bullseye/i386/metaphlan2_2.9.22-1.rbuild.log.gz [2024-11-25 08:46:22] INFO: Starting at 2024-11-25 08:46:22.047732 [2024-11-25 08:46:22] INFO: Generating the pages of 1 package(s) [2024-11-25 08:46:23] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/metaphlan2_2.9.22-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/metaphlan2_2.9.22-1.diff.gz is missing [2024-11-25 08:46:23] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/metaphlan2_2.9.22-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/metaphlan2_2.9.22-1.diff.gz is missing [2024-11-25 08:46:23] INFO: Finished at 2024-11-25 08:46:23.731553, took: 0:00:01.683829 All cleanup done. Mon Nov 25 08:46:23 UTC 2024 - total duration: 0h 0m 44s. Mon Nov 25 08:46:23 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-GR7uTiFJ, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 48.822s CPU time consumed: 7.856s