Running as unit: rb-build-i386_14-52704.service ==================================================================================== Mon Nov 25 17:33:21 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_i386_14) on jenkins, called using "infom08-i386 infom07-i386" as arguments. Mon Nov 25 17:33:21 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-CgyOZQhb" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Nov 25 17:33:22 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom08-i386.debian.net is marked as down. Mon Nov 25 17:33:22 UTC 2024 - checking via ssh if infom08-i386.debian.net is up. removed '/tmp/read-only-fs-test-FC0DOT' Mon Nov 25 17:33:22 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom07-i386.debian.net is marked as down. Mon Nov 25 17:33:22 UTC 2024 - checking via ssh if infom07-i386.debian.net is up. removed '/tmp/read-only-fs-test-ivL0up' ok, let's check if r-bioc-spatialexperiment is building anywhere yet… ok, r-bioc-spatialexperiment is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of r-bioc-spatialexperiment in trixie on i386 on jenkins now. 1st build will be done on infom08-i386.debian.net. 2nd build will be done on infom07-i386.debian.net. ============================================================================= Mon Nov 25 17:33:25 UTC 2024 I: starting to build r-bioc-spatialexperiment/trixie/i386 on jenkins on '2024-11-25 17:33' Mon Nov 25 17:33:25 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_14/52704/console.log 1732556005 i386 trixie r-bioc-spatialexperiment Mon Nov 25 17:33:25 UTC 2024 I: Downloading source for trixie/r-bioc-spatialexperiment=1.14.0+ds-2 --2024-11-25 17:33:25-- http://deb.debian.org/debian/pool/main/r/r-bioc-spatialexperiment/r-bioc-spatialexperiment_1.14.0%2bds-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2388 (2.3K) [text/prs.lines.tag] Saving to: ‘r-bioc-spatialexperiment_1.14.0+ds-2.dsc’ 0K .. 100% 270M=0s 2024-11-25 17:33:25 (270 MB/s) - ‘r-bioc-spatialexperiment_1.14.0+ds-2.dsc’ saved [2388/2388] --2024-11-25 17:33:25-- http://deb.debian.org/debian/pool/main/r/r-bioc-spatialexperiment/r-bioc-spatialexperiment_1.14.0%2bds-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2388 (2.3K) [text/prs.lines.tag] Saving to: ‘r-bioc-spatialexperiment_1.14.0+ds-2.dsc’ 0K .. 100% 270M=0s 2024-11-25 17:33:25 (270 MB/s) - ‘r-bioc-spatialexperiment_1.14.0+ds-2.dsc’ saved [2388/2388] Mon Nov 25 17:33:26 UTC 2024 I: r-bioc-spatialexperiment_1.14.0+ds-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-spatialexperiment Binary: r-bioc-spatialexperiment Architecture: all Version: 1.14.0+ds-2 Maintainer: Debian R Packages Maintainers Uploaders: Michael R. Crusoe Homepage: https://bioconductor.org/packages/SpatialExperiment Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-spatialexperiment Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-spatialexperiment.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-singlecellexperiment (>= 1.26.0), r-cran-rjson, r-cran-magick, r-bioc-s4vectors (>= 0.42.1), r-bioc-summarizedexperiment (>= 1.34.0), r-bioc-biocgenerics (>= 0.50.0), r-bioc-biocfilecache (>= 2.12.0) Package-List: r-bioc-spatialexperiment deb gnu-r optional arch=all Checksums-Sha1: a86fa302b66cade2bcb6b15012e78e4983ffe518 746420 r-bioc-spatialexperiment_1.14.0+ds.orig.tar.xz 0da7dca041d9fe7fce8ae735c7f21abcffc0e0bd 2368 r-bioc-spatialexperiment_1.14.0+ds-2.debian.tar.xz Checksums-Sha256: 8ee536ea737809599274dbb25078f23c1a155f27bb464bc63923bccabc972dcd 746420 r-bioc-spatialexperiment_1.14.0+ds.orig.tar.xz d847acbfa3b44838dac382bb0d3903ebb28f69a901d8d7ef39ffe095798b2373 2368 r-bioc-spatialexperiment_1.14.0+ds-2.debian.tar.xz Files: e3e87ac3e71c515510b35e35857b96ea 746420 r-bioc-spatialexperiment_1.14.0+ds.orig.tar.xz b461c49714bcbc47f26cc09d187a9de3 2368 r-bioc-spatialexperiment_1.14.0+ds-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmbByXQACgkQPCZ2P2xn 5uIh7xAAiNqx3I8qcP11wOE7rZRa9vEw++kU0ILZRYzWwPdFV06TjJpdllCLWZ1n wEIGIW5r3SkNCPk9KwtskVC05agqYtsIT9ibIBjKQFI8OLRY7d9njBA53GOb84gg X8w8rDwrJVTkHQQuWcm/x7XqsMWLcnOmgWr7E2PAPbkQ304uMUOSJpjs/5KHNE1I z2YDKSWNjDUr0RhWevFRj7xYJQPzC12Vu7LT37fnK5S7D2mU6Q9RYLEC+WdroTQB +woJzLB44OuLfPqL+1KiGRmXb420Vr045siswZg4HtM87wVJikA6sYEsK3vBfU0V UI9LBd9dOX9jrJ4T0pxy7Kvid8ApV8FZi14hyL8SFjpfOg1G5aK3cvqJLKGxM0V8 hdj3YvapfNVWZTa3+6XiM8CONTJjxB0RLp2cBk8Vvinsn7ZrN6lCVJHJHuIwlYyb HwSdi4UR4dzmPhJDGHorV9l5hrPPbVf1jByMTy1MuwqgYIlziD3b6eFTjua1pU8I DcItxDYRf6E7Qr0hnK5mEpbYa+PEFJ2DBzxhv4+c+fZ0alJfnFqlJ1tU76OAG2JK N3dVs5N/ALQFGv/qj/3psZY2qdoMRXQw9ThYB+h0qxOf+rcekxpr4gU2Z64rx13j mSZGoNZMYswoEjNLEmEo3m+jWyVXPeGC4j5UzTKLb/ka9EXZCm0= =8qgT -----END PGP SIGNATURE----- Mon Nov 25 17:33:26 UTC 2024 I: Checking whether the package is not for us Mon Nov 25 17:33:26 UTC 2024 I: Starting 1st build on remote node infom08-i386.debian.net. Mon Nov 25 17:33:26 UTC 2024 I: Preparing to do remote build '1' on infom08-i386.debian.net. Mon Nov 25 17:33:26 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom08-i386.debian.net is marked as down. Mon Nov 25 17:33:26 UTC 2024 - checking via ssh if infom08-i386.debian.net is up. removed '/tmp/read-only-fs-test-DwtqmX' ==================================================================================== Sun Dec 28 23:56:27 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom08-i386, called using "1 r-bioc-spatialexperiment trixie /srv/reproducible-results/rbuild-debian/r-b-build.k5grVpRK 1.14.0+ds-2" as arguments. Sun Dec 28 23:56:27 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-xJZnEtIR" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Dec 28 23:56:27 UTC 2025 I: Downloading source for trixie/r-bioc-spatialexperiment=1.14.0+ds-2 Reading package lists... NOTICE: 'r-bioc-spatialexperiment' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-spatialexperiment.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-spatialexperiment.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 751 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main r-bioc-spatialexperiment 1.14.0+ds-2 (dsc) [2388 B] Get:2 http://deb.debian.org/debian trixie/main r-bioc-spatialexperiment 1.14.0+ds-2 (tar) [746 kB] Get:3 http://deb.debian.org/debian trixie/main r-bioc-spatialexperiment 1.14.0+ds-2 (diff) [2368 B] Fetched 751 kB in 0s (8112 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'r-bioc-spatialexperiment' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-spatialexperiment.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-spatialexperiment.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 751 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main r-bioc-spatialexperiment 1.14.0+ds-2 (dsc) [2388 B] Get:2 http://deb.debian.org/debian trixie/main r-bioc-spatialexperiment 1.14.0+ds-2 (tar) [746 kB] Get:3 http://deb.debian.org/debian trixie/main r-bioc-spatialexperiment 1.14.0+ds-2 (diff) [2368 B] Fetched 751 kB in 0s (8112 kB/s) Download complete and in download only mode ============================================================================= Building r-bioc-spatialexperiment in trixie on i386 on infom08-i386 now. Date: Sun Dec 28 23:56:27 UTC 2025 Date UTC: Sun Dec 28 23:56:27 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Dec 28 11:56:27 -12 2025 I: pbuilder-time-stamp: 1766966187 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [r-bioc-spatialexperiment_1.14.0+ds-2.dsc] I: copying [./r-bioc-spatialexperiment_1.14.0+ds.orig.tar.xz] I: copying [./r-bioc-spatialexperiment_1.14.0+ds-2.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Aug 18 10:14:12 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-spatialexperiment_1.14.0+ds-2.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-spatialexperiment in r-bioc-spatialexperiment-1.14.0+ds dpkg-source: info: unpacking r-bioc-spatialexperiment_1.14.0+ds.orig.tar.xz dpkg-source: info: unpacking r-bioc-spatialexperiment_1.14.0+ds-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/12037/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='3634d20bb78845ea95fa254a7c70ecf8' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='12037' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.k5grVpRK/pbuilderrc_w9MD --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.k5grVpRK/b1 --logfile b1/build.log r-bioc-spatialexperiment_1.14.0+ds-2.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom08-i386 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/12037/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-singlecellexperiment (>= 1.26.0), r-cran-rjson, r-cran-magick, r-bioc-s4vectors (>= 0.42.1), r-bioc-summarizedexperiment (>= 1.34.0), r-bioc-biocgenerics (>= 0.50.0), r-bioc-biocfilecache (>= 2.12.0) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-singlecellexperiment (>= 1.26.0); however: Package r-bioc-singlecellexperiment is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rjson; however: Package r-cran-rjson is not installed. pbuilder-satisfydepends-dummy depends on r-cran-magick; however: Package r-cran-magick is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors (>= 0.42.1); however: Package r-bioc-s4vectors is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-summarizedexperiment (>= 1.34.0); however: Package r-bioc-summarizedexperiment is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics (>= 0.50.0); however: Package r-bioc-biocgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocfilecache (>= 2.12.0); however: Package r-bioc-biocfilecache is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} imagemagick-6-common{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdav1d7{a} libde265-0{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfftw3-double3{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblqr-1-0{a} libltdl7{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmagick++-6.q16-9t64{a} libmagickcore-6.q16-7t64{a} libmagickwand-6.q16-7t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libopenjp2-7{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libraw23t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} littler{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biocfilecache{a} r-bioc-biocgenerics{a} r-bioc-s4vectors{a} r-cran-askpass{a} r-cran-bit{a} r-cran-bit64{a} r-cran-blob{a} r-cran-cachem{a} r-cran-cli{a} r-cran-cpp11{a} r-cran-curl{a} r-cran-dbi{a} r-cran-dbplyr{a} r-cran-dplyr{a} r-cran-fansi{a} r-cran-fastmap{a} r-cran-filelock{a} r-cran-generics{a} r-cran-glue{a} r-cran-httr{a} r-cran-jsonlite{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magick{a} r-cran-magrittr{a} r-cran-memoise{a} r-cran-mime{a} r-cran-openssl{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plogr{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rcpp{a} r-cran-rjson{a} r-cran-rlang{a} r-cran-rsqlite{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-sys{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-withr{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts fonts-urw-base35 ghostscript git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libheif-plugin-aomenc libheif-plugin-x265 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-cran-av r-cran-bench r-cran-brio r-cran-broom r-cran-callr r-cran-covr r-cran-crayon r-cran-data.table r-cran-dbitest r-cran-decor r-cran-desc r-cran-digest r-cran-formattable r-cran-fs r-cran-gert r-cran-ggplot2 r-cran-gh r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-irdisplay r-cran-jpeg r-cran-knitr r-cran-later r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-mockery r-cran-pdftools r-cran-pkgdown r-cran-pkgload r-cran-png r-cran-processx r-cran-progress r-cran-ps r-cran-r.rsp r-cran-readr r-cran-rmariadb r-cran-rmarkdown r-cran-rmysql r-cran-rpostgresql r-cran-rprojroot r-cran-rstudioapi r-cran-rsvg r-cran-runit r-cran-rvest r-cran-scales r-cran-sodium r-cran-spelling r-cran-testthat r-cran-tidyverse r-cran-unitizer r-cran-usethis r-cran-waldo r-cran-webutils r-cran-whoami r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 250 newly installed, 0 to remove and 0 not upgraded. Need to get 134 MB of archives. After unpacking 388 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: r-bioc-singlecellexperiment (>= 1.26.0) but it is not installable Depends: r-bioc-summarizedexperiment (>= 1.34.0) but it is not installable Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} imagemagick-6-common{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdav1d7{a} libde265-0{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfftw3-double3{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblqr-1-0{a} libltdl7{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmagick++-6.q16-9t64{a} libmagickcore-6.q16-7t64{a} libmagickwand-6.q16-7t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libopenjp2-7{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libraw23t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} littler{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biocfilecache{a} r-bioc-biocgenerics{a} r-bioc-s4vectors{a} r-cran-askpass{a} r-cran-bit{a} r-cran-bit64{a} r-cran-blob{a} r-cran-cachem{a} r-cran-cli{a} r-cran-cpp11{a} r-cran-curl{a} r-cran-dbi{a} r-cran-dbplyr{a} r-cran-dplyr{a} r-cran-fansi{a} r-cran-fastmap{a} r-cran-filelock{a} r-cran-generics{a} r-cran-glue{a} r-cran-httr{a} r-cran-jsonlite{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magick{a} r-cran-magrittr{a} r-cran-memoise{a} r-cran-mime{a} r-cran-openssl{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plogr{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rcpp{a} r-cran-rjson{a} r-cran-rlang{a} r-cran-rsqlite{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-sys{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-withr{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts fonts-urw-base35 ghostscript git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libheif-plugin-aomenc libheif-plugin-x265 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-cran-av r-cran-bench r-cran-brio r-cran-broom r-cran-callr r-cran-covr r-cran-crayon r-cran-data.table r-cran-dbitest r-cran-decor r-cran-desc r-cran-digest r-cran-formattable r-cran-fs r-cran-gert r-cran-ggplot2 r-cran-gh r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-irdisplay r-cran-jpeg r-cran-knitr r-cran-later r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-mockery r-cran-pdftools r-cran-pkgdown r-cran-pkgload r-cran-png r-cran-processx r-cran-progress r-cran-ps r-cran-r.rsp r-cran-readr r-cran-rmariadb r-cran-rmarkdown r-cran-rmysql r-cran-rpostgresql r-cran-rprojroot r-cran-rstudioapi r-cran-rsvg r-cran-runit r-cran-rvest r-cran-scales r-cran-sodium r-cran-spelling r-cran-testthat r-cran-tidyverse r-cran-unitizer r-cran-usethis r-cran-waldo r-cran-webutils r-cran-whoami r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 250 newly installed, 0 to remove and 0 not upgraded. Need to get 134 MB of archives. After unpacking 388 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/12037 and its subdirectories Starting cleanup. All cleanup done. Sun Dec 28 23:56:39 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-xJZnEtIR, removing. /srv/reproducible-results/rbuild-debian/r-b-build.k5grVpRK: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 25 17:33 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 25 17:33 b2 -rw-r--r-- 1 jenkins jenkins 2388 Aug 18 10:20 r-bioc-spatialexperiment_1.14.0+ds-2.dsc -rw------- 1 jenkins jenkins 3623 Nov 25 17:33 rbuildlog.YBXRPg0 /srv/reproducible-results/rbuild-debian/r-b-build.k5grVpRK/b1: total 20 -rw-r--r-- 1 jenkins jenkins 18849 Nov 25 17:33 build.log /srv/reproducible-results/rbuild-debian/r-b-build.k5grVpRK/b2: total 0 Mon Nov 25 17:33:40 UTC 2024 I: Deleting $TMPDIR on infom08-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Dec 28 11:56:27 -12 2025 I: pbuilder-time-stamp: 1766966187 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [r-bioc-spatialexperiment_1.14.0+ds-2.dsc] I: copying [./r-bioc-spatialexperiment_1.14.0+ds.orig.tar.xz] I: copying [./r-bioc-spatialexperiment_1.14.0+ds-2.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Aug 18 10:14:12 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-spatialexperiment_1.14.0+ds-2.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-spatialexperiment in r-bioc-spatialexperiment-1.14.0+ds dpkg-source: info: unpacking r-bioc-spatialexperiment_1.14.0+ds.orig.tar.xz dpkg-source: info: unpacking r-bioc-spatialexperiment_1.14.0+ds-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/12037/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='3634d20bb78845ea95fa254a7c70ecf8' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='12037' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.k5grVpRK/pbuilderrc_w9MD --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.k5grVpRK/b1 --logfile b1/build.log r-bioc-spatialexperiment_1.14.0+ds-2.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom08-i386 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/12037/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-singlecellexperiment (>= 1.26.0), r-cran-rjson, r-cran-magick, r-bioc-s4vectors (>= 0.42.1), r-bioc-summarizedexperiment (>= 1.34.0), r-bioc-biocgenerics (>= 0.50.0), r-bioc-biocfilecache (>= 2.12.0) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-singlecellexperiment (>= 1.26.0); however: Package r-bioc-singlecellexperiment is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rjson; however: Package r-cran-rjson is not installed. pbuilder-satisfydepends-dummy depends on r-cran-magick; however: Package r-cran-magick is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors (>= 0.42.1); however: Package r-bioc-s4vectors is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-summarizedexperiment (>= 1.34.0); however: Package r-bioc-summarizedexperiment is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics (>= 0.50.0); however: Package r-bioc-biocgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocfilecache (>= 2.12.0); however: Package r-bioc-biocfilecache is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} imagemagick-6-common{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdav1d7{a} libde265-0{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfftw3-double3{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblqr-1-0{a} libltdl7{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmagick++-6.q16-9t64{a} libmagickcore-6.q16-7t64{a} libmagickwand-6.q16-7t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libopenjp2-7{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libraw23t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} littler{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biocfilecache{a} r-bioc-biocgenerics{a} r-bioc-s4vectors{a} r-cran-askpass{a} r-cran-bit{a} r-cran-bit64{a} r-cran-blob{a} r-cran-cachem{a} r-cran-cli{a} r-cran-cpp11{a} r-cran-curl{a} r-cran-dbi{a} r-cran-dbplyr{a} r-cran-dplyr{a} r-cran-fansi{a} r-cran-fastmap{a} r-cran-filelock{a} r-cran-generics{a} r-cran-glue{a} r-cran-httr{a} r-cran-jsonlite{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magick{a} r-cran-magrittr{a} r-cran-memoise{a} r-cran-mime{a} r-cran-openssl{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plogr{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rcpp{a} r-cran-rjson{a} r-cran-rlang{a} r-cran-rsqlite{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-sys{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-withr{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts fonts-urw-base35 ghostscript git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libheif-plugin-aomenc libheif-plugin-x265 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-cran-av r-cran-bench r-cran-brio r-cran-broom r-cran-callr r-cran-covr r-cran-crayon r-cran-data.table r-cran-dbitest r-cran-decor r-cran-desc r-cran-digest r-cran-formattable r-cran-fs r-cran-gert r-cran-ggplot2 r-cran-gh r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-irdisplay r-cran-jpeg r-cran-knitr r-cran-later r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-mockery r-cran-pdftools r-cran-pkgdown r-cran-pkgload r-cran-png r-cran-processx r-cran-progress r-cran-ps r-cran-r.rsp r-cran-readr r-cran-rmariadb r-cran-rmarkdown r-cran-rmysql r-cran-rpostgresql r-cran-rprojroot r-cran-rstudioapi r-cran-rsvg r-cran-runit r-cran-rvest r-cran-scales r-cran-sodium r-cran-spelling r-cran-testthat r-cran-tidyverse r-cran-unitizer r-cran-usethis r-cran-waldo r-cran-webutils r-cran-whoami r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 250 newly installed, 0 to remove and 0 not upgraded. Need to get 134 MB of archives. After unpacking 388 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: r-bioc-singlecellexperiment (>= 1.26.0) but it is not installable Depends: r-bioc-summarizedexperiment (>= 1.34.0) but it is not installable Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} imagemagick-6-common{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdav1d7{a} libde265-0{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfftw3-double3{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblqr-1-0{a} libltdl7{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmagick++-6.q16-9t64{a} libmagickcore-6.q16-7t64{a} libmagickwand-6.q16-7t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libopenjp2-7{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libraw23t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} littler{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biocfilecache{a} r-bioc-biocgenerics{a} r-bioc-s4vectors{a} r-cran-askpass{a} r-cran-bit{a} r-cran-bit64{a} r-cran-blob{a} r-cran-cachem{a} r-cran-cli{a} r-cran-cpp11{a} r-cran-curl{a} r-cran-dbi{a} r-cran-dbplyr{a} r-cran-dplyr{a} r-cran-fansi{a} r-cran-fastmap{a} r-cran-filelock{a} r-cran-generics{a} r-cran-glue{a} r-cran-httr{a} r-cran-jsonlite{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magick{a} r-cran-magrittr{a} r-cran-memoise{a} r-cran-mime{a} r-cran-openssl{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plogr{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rcpp{a} r-cran-rjson{a} r-cran-rlang{a} r-cran-rsqlite{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-sys{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-withr{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts fonts-urw-base35 ghostscript git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libheif-plugin-aomenc libheif-plugin-x265 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-cran-av r-cran-bench r-cran-brio r-cran-broom r-cran-callr r-cran-covr r-cran-crayon r-cran-data.table r-cran-dbitest r-cran-decor r-cran-desc r-cran-digest r-cran-formattable r-cran-fs r-cran-gert r-cran-ggplot2 r-cran-gh r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-irdisplay r-cran-jpeg r-cran-knitr r-cran-later r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-mockery r-cran-pdftools r-cran-pkgdown r-cran-pkgload r-cran-png r-cran-processx r-cran-progress r-cran-ps r-cran-r.rsp r-cran-readr r-cran-rmariadb r-cran-rmarkdown r-cran-rmysql r-cran-rpostgresql r-cran-rprojroot r-cran-rstudioapi r-cran-rsvg r-cran-runit r-cran-rvest r-cran-scales r-cran-sodium r-cran-spelling r-cran-testthat r-cran-tidyverse r-cran-unitizer r-cran-usethis r-cran-waldo r-cran-webutils r-cran-whoami r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 250 newly installed, 0 to remove and 0 not upgraded. Need to get 134 MB of archives. After unpacking 388 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/12037 and its subdirectories r-bioc-spatialexperiment failed to build from source. removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/r-bioc-spatialexperiment_1.14.0+ds-2.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/r-bioc-spatialexperiment_1.14.0+ds-2.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/r-bioc-spatialexperiment_1.14.0+ds-2.build1.log.gz' Mon Nov 25 17:33:41 UTC 2024 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 75.8% -- replaced with stdout Mon Nov 25 17:33:41 UTC 2024 W: Downloading the build dependencies failed Mon Nov 25 17:33:41 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Mon Nov 25 17:33:41 UTC 2024 W: Network problems are automatically rescheduled after some hours. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-25 17:33:42] INFO: Starting at 2024-11-25 17:33:42.109269 [2024-11-25 17:33:42] INFO: Generating the pages of 1 package(s) [2024-11-25 17:33:42] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/r-bioc-spatialexperiment_1.14.0+ds-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/r-bioc-spatialexperiment_1.14.0+ds-2.diff.gz is missing [2024-11-25 17:33:42] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/r-bioc-spatialexperiment_1.14.0+ds-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/r-bioc-spatialexperiment_1.14.0+ds-2.diff.gz is missing [2024-11-25 17:33:42] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/r-bioc-spatialexperiment_1.14.0+ds-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/r-bioc-spatialexperiment_1.14.0+ds-2.diff.gz is missing [2024-11-25 17:33:42] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/i386/r-bioc-spatialexperiment didn't produce a buildlog, even though it has been built. [2024-11-25 17:33:42] INFO: Finished at 2024-11-25 17:33:42.410837, took: 0:00:00.301573 Mon Nov 25 17:33:42 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/i386/r-bioc-spatialexperiment.html Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/r-bioc-spatialexperiment_1.14.0+ds-2.rbuild.log: 72.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/r-bioc-spatialexperiment_1.14.0+ds-2.rbuild.log.gz [2024-11-25 17:33:42] INFO: Starting at 2024-11-25 17:33:42.784762 [2024-11-25 17:33:42] INFO: Generating the pages of 1 package(s) [2024-11-25 17:33:42] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/r-bioc-spatialexperiment_1.14.0+ds-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/r-bioc-spatialexperiment_1.14.0+ds-2.diff.gz is missing [2024-11-25 17:33:42] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/r-bioc-spatialexperiment_1.14.0+ds-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/r-bioc-spatialexperiment_1.14.0+ds-2.diff.gz is missing [2024-11-25 17:33:43] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/r-bioc-spatialexperiment_1.14.0+ds-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/r-bioc-spatialexperiment_1.14.0+ds-2.diff.gz is missing [2024-11-25 17:33:43] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/r-bioc-spatialexperiment_1.14.0+ds-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/r-bioc-spatialexperiment_1.14.0+ds-2.diff.gz is missing [2024-11-25 17:33:43] INFO: Finished at 2024-11-25 17:33:43.025220, took: 0:00:00.240465 All cleanup done. Mon Nov 25 17:33:43 UTC 2024 - total duration: 0h 0m 19s. Mon Nov 25 17:33:43 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-CgyOZQhb, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 21.227s CPU time consumed: 4.782s