Running as unit: rb-build-i386_15-48596.service ==================================================================================== Mon Nov 25 17:11:46 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_i386_15) on jenkins, called using "infom07-i386 infom08-i386" as arguments. Mon Nov 25 17:11:46 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-YwOTehfa" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Nov 25 17:11:46 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom07-i386.debian.net is marked as down. Mon Nov 25 17:11:46 UTC 2024 - checking via ssh if infom07-i386.debian.net is up. removed '/tmp/read-only-fs-test-gEkjIh' Mon Nov 25 17:11:47 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom08-i386.debian.net is marked as down. Mon Nov 25 17:11:47 UTC 2024 - checking via ssh if infom08-i386.debian.net is up. removed '/tmp/read-only-fs-test-keFeqg' ok, let's check if unifrac is building anywhere yet… ok, unifrac is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of unifrac in bookworm on i386 on jenkins now. 1st build will be done on infom07-i386.debian.net. 2nd build will be done on infom08-i386.debian.net. ============================================================================= Mon Nov 25 17:12:11 UTC 2024 I: starting to build unifrac/bookworm/i386 on jenkins on '2024-11-25 17:11' Mon Nov 25 17:12:11 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_15/48596/console.log 1732554731 i386 bookworm unifrac Mon Nov 25 17:12:11 UTC 2024 I: Downloading source for bookworm/unifrac=1.2-3 --2024-11-25 17:12:12-- http://cdn-fastly.deb.debian.org/debian/pool/main/u/unifrac/unifrac_1.2-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2250 (2.2K) [text/prs.lines.tag] Saving to: ‘unifrac_1.2-3.dsc’ 0K .. 100% 337M=0s 2024-11-25 17:12:12 (337 MB/s) - ‘unifrac_1.2-3.dsc’ saved [2250/2250] --2024-11-25 17:12:12-- http://cdn-fastly.deb.debian.org/debian/pool/main/u/unifrac/unifrac_1.2-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2250 (2.2K) [text/prs.lines.tag] Saving to: ‘unifrac_1.2-3.dsc’ 0K .. 100% 337M=0s 2024-11-25 17:12:12 (337 MB/s) - ‘unifrac_1.2-3.dsc’ saved [2250/2250] Mon Nov 25 17:12:12 UTC 2024 I: unifrac_1.2-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: unifrac Binary: python3-unifrac Architecture: any Version: 1.2-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/biocore/unifrac Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/unifrac Vcs-Git: https://salsa.debian.org/med-team/unifrac.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: build-essential, python3-all Build-Depends: debhelper-compat (= 13), dh-exec, dh-python, python3-all-dev, python3-setuptools, python3-numpy, cython3, libhdf5-dev, hdf5-helpers, python3-h5py, python3-biom-format, python3-skbio (>= 0.5.8-3~) , python3-iow , libssu-dev (>= 1.2-1~) Package-List: python3-unifrac deb python optional arch=any Checksums-Sha1: d2588065c9e5aabf0a946de442136074a92779ad 61591 unifrac_1.2.orig.tar.gz 7547eac53721dac60fd4e899a67adc7eeae5196e 6760 unifrac_1.2-3.debian.tar.xz Checksums-Sha256: f275a5281d151b9a44b3cd34d80397fd6a9ed52595e4ed5d45a82f368053b364 61591 unifrac_1.2.orig.tar.gz ad3fcbfda47563c657488cba1cb58b1a6846de7903144e979c50d3ab2eb4384e 6760 unifrac_1.2-3.debian.tar.xz Files: 8edbcdc9b12f4a0fc2c50bb6267f6b09 61591 unifrac_1.2.orig.tar.gz e95e03aecc5784389db4836c5b592d09 6760 unifrac_1.2-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmPaYIoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtF2DQ//dVe4mkfgvk5f5Ck+kW3a7gN3WgS4ttWt Q0RAnKnz94UgXwKPD12Sdt47BM5ooDpzQCNlGNGowJsjt1A6Sx2auz03mQe6+hZu vc6/G00jU33cCXwER+52TRnGQNkOOzgYvoji1vWZ9B6g1xNj8fofTJuGk/5H5JXj 9D1f/OvL/8kreMXOdYa7KYfXmyQ21EXNu9Jfy6+HVD+r/fEzmop3Sh24yem8vNvI yqPYsj49ZqqPMzY3XIymKJEQBhmjSPm2Izxnzo55cN0Gtr/9QtekdqfQuvOOQyMA ZajmUl5PnQdFCvMmg+7pyTVqLarHIiTAe/Y4g6lhhHppNm2t9Wcy6LrNdf/rqOVI Ea6zbu6PY7o21un/R8DGn3sQbeZYaJLvU9D8309iuZ1329chXY4gPS7rQsuMdWei vo3nWQdIBeC4xxDgFDn2ahXgxPz7q0W4hIs/8kRuOp1uf3gNy7fvXD33+lxV2Tic wsbmU6aBRlXNF5045DszRvpImiviLcvZDJwKPk+odjTAe6ZOs3LqxgxLbx4EGHmS r4ictbvs21XEMzSjoD9kUGMztuXl1xMKK/cjwyAWPW86gakhcIypxQM8HjXl0A7y PJG1n3qaAdUxvYR8YLRtqnBguxFhy2CS3AIRwfJ5eBQK9scobQq1R6e1rPCjaqHE +sehYqNUbBY= =4Bqf -----END PGP SIGNATURE----- Mon Nov 25 17:12:12 UTC 2024 I: Checking whether the package is not for us Mon Nov 25 17:12:12 UTC 2024 I: Starting 1st build on remote node infom07-i386.debian.net. Mon Nov 25 17:12:12 UTC 2024 I: Preparing to do remote build '1' on infom07-i386.debian.net. Mon Nov 25 17:12:12 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom07-i386.debian.net is marked as down. Mon Nov 25 17:12:12 UTC 2024 - checking via ssh if infom07-i386.debian.net is up. removed '/tmp/read-only-fs-test-iy1tRl' ==================================================================================== Mon Nov 25 17:12:13 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom07-i386, called using "1 unifrac bookworm /srv/reproducible-results/rbuild-debian/r-b-build.kQPyFCqS 1.2-3" as arguments. Mon Nov 25 17:12:13 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-kP1M8hrX" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Nov 25 17:12:13 UTC 2024 I: Downloading source for bookworm/unifrac=1.2-3 Reading package lists... NOTICE: 'unifrac' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/unifrac.git Please use: git clone https://salsa.debian.org/med-team/unifrac.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 70.6 kB of source archives. Get:1 http://deb.debian.org/debian bookworm/main unifrac 1.2-3 (dsc) [2250 B] Get:2 http://deb.debian.org/debian bookworm/main unifrac 1.2-3 (tar) [61.6 kB] Get:3 http://deb.debian.org/debian bookworm/main unifrac 1.2-3 (diff) [6760 B] Fetched 70.6 kB in 0s (712 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'unifrac' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/unifrac.git Please use: git clone https://salsa.debian.org/med-team/unifrac.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 70.6 kB of source archives. Get:1 http://deb.debian.org/debian bookworm/main unifrac 1.2-3 (dsc) [2250 B] Get:2 http://deb.debian.org/debian bookworm/main unifrac 1.2-3 (tar) [61.6 kB] Get:3 http://deb.debian.org/debian bookworm/main unifrac 1.2-3 (diff) [6760 B] Fetched 70.6 kB in 0s (712 kB/s) Download complete and in download only mode ============================================================================= Building unifrac in bookworm on i386 on infom07-i386 now. Date: Mon Nov 25 17:12:13 UTC 2024 Date UTC: Mon Nov 25 17:12:13 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Mon Nov 25 05:12:14 -12 2024 I: pbuilder-time-stamp: 1732554734 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [unifrac_1.2-3.dsc] I: copying [./unifrac_1.2.orig.tar.gz] I: copying [./unifrac_1.2-3.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Feb 1 00:52:26 2023 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./unifrac_1.2-3.dsc: no acceptable signature found dpkg-source: info: extracting unifrac in unifrac-1.2 dpkg-source: info: unpacking unifrac_1.2.orig.tar.gz dpkg-source: info: unpacking unifrac_1.2-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove-check-for-pkg-version.patch dpkg-source: info: applying no_conda_prefix.patch dpkg-source: info: applying relax_test_conditions.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/15903/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='bc0e717ba9c043df91b4c4a40690a6ad' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='15903' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.kQPyFCqS/pbuilderrc_cOmz --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.kQPyFCqS/b1 --logfile b1/build.log unifrac_1.2-3.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom07-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Mar 29 2024 bash -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 2023 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Oct 18 00:56 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 84272 Oct 18 00:56 findmnt -rwsr-xr-x 1 root root 30240 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 22 2023 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Oct 18 00:56 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Oct 18 00:56 more -rwsr-xr-x 1 root root 58912 Oct 18 00:56 mount -rwxr-xr-x 1 root root 13856 Oct 18 00:56 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Mar 29 2024 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Jul 28 2023 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Oct 18 00:56 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Jan 19 2024 tar -rwxr-xr-x 1 root root 13860 Jul 28 2023 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 30236 Oct 18 00:56 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Oct 18 00:56 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/15903/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-exec, dh-python, python3-all-dev, python3-setuptools, python3-numpy, cython3, libhdf5-dev, hdf5-helpers, python3-h5py, python3-biom-format, python3-skbio (>= 0.5.8-3~), python3-iow, libssu-dev (>= 1.2-1~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19554 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-exec; however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on hdf5-helpers; however: Package hdf5-helpers is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-biom-format; however: Package python3-biom-format is not installed. pbuilder-satisfydepends-dummy depends on python3-skbio (>= 0.5.8-3~); however: Package python3-skbio is not installed. pbuilder-satisfydepends-dummy depends on python3-iow; however: Package python3-iow is not installed. pbuilder-satisfydepends-dummy depends on libssu-dev (>= 1.2-1~); however: Package libssu-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libcurl4{a} libcurl4-openssl-dev{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libicu72{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblapacke{a} liblbfgsb0{a} libldap-2.5-0{a} liblzf1{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libopenblas-dev{a} libopenblas-pthread-dev{a} libopenblas0{a} libopenblas0-pthread{a} libpipeline1{a} libpsl5{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libssl-dev{a} libssu-dev{a} libssu0{a} libsub-override-perl{a} libsz2{a} libtmglib3{a} libtool{a} libuchardet0{a} libxml2{a} libxsimd-dev{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-beniget{a} python3-biom-format{a} python3-click{a} python3-colorama{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-gast{a} python3-h5py{a} python3-h5py-serial{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-ply{a} python3-pythran{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-tz{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-bottleneck python3-bs4 python3-html5lib python3-jinja2 python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pil python3-tables wget 0 packages upgraded, 119 newly installed, 0 to remove and 0 not upgraded. Need to get 96.7 MB of archives. After unpacking 539 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: python3-skbio (>= 0.5.8-3~) which is a virtual package and is not provided by any available package Depends: python3-iow which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libcurl4{a} libcurl4-openssl-dev{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libicu72{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblapacke{a} liblbfgsb0{a} libldap-2.5-0{a} liblzf1{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libopenblas-dev{a} libopenblas-pthread-dev{a} libopenblas0{a} libopenblas0-pthread{a} libpipeline1{a} libpsl5{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libssl-dev{a} libssu-dev{a} libssu0{a} libsub-override-perl{a} libsz2{a} libtmglib3{a} libtool{a} libuchardet0{a} libxml2{a} libxsimd-dev{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-beniget{a} python3-biom-format{a} python3-click{a} python3-colorama{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-gast{a} python3-h5py{a} python3-h5py-serial{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-ply{a} python3-pythran{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-tz{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-bottleneck python3-bs4 python3-html5lib python3-jinja2 python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pil python3-tables wget 0 packages upgraded, 119 newly installed, 0 to remove and 0 not upgraded. Need to get 96.7 MB of archives. After unpacking 539 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/15903 and its subdirectories Starting cleanup. All cleanup done. Mon Nov 25 17:12:32 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-kP1M8hrX, removing. /srv/reproducible-results/rbuild-debian/r-b-build.kQPyFCqS: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 25 17:12 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 25 17:12 b2 -rw------- 1 jenkins jenkins 3349 Nov 25 17:12 rbuildlog.PNRhkSV -rw-r--r-- 1 jenkins jenkins 2250 Feb 1 2023 unifrac_1.2-3.dsc /srv/reproducible-results/rbuild-debian/r-b-build.kQPyFCqS/b1: total 20 -rw-r--r-- 1 jenkins jenkins 16787 Nov 25 17:12 build.log /srv/reproducible-results/rbuild-debian/r-b-build.kQPyFCqS/b2: total 0 Mon Nov 25 17:12:33 UTC 2024 I: Deleting $TMPDIR on infom07-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Nov 25 05:12:14 -12 2024 I: pbuilder-time-stamp: 1732554734 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [unifrac_1.2-3.dsc] I: copying [./unifrac_1.2.orig.tar.gz] I: copying [./unifrac_1.2-3.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Feb 1 00:52:26 2023 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./unifrac_1.2-3.dsc: no acceptable signature found dpkg-source: info: extracting unifrac in unifrac-1.2 dpkg-source: info: unpacking unifrac_1.2.orig.tar.gz dpkg-source: info: unpacking unifrac_1.2-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove-check-for-pkg-version.patch dpkg-source: info: applying no_conda_prefix.patch dpkg-source: info: applying relax_test_conditions.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/15903/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='bc0e717ba9c043df91b4c4a40690a6ad' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='15903' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.kQPyFCqS/pbuilderrc_cOmz --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.kQPyFCqS/b1 --logfile b1/build.log unifrac_1.2-3.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom07-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Mar 29 2024 bash -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 2023 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Oct 18 00:56 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 84272 Oct 18 00:56 findmnt -rwsr-xr-x 1 root root 30240 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 22 2023 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Oct 18 00:56 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Oct 18 00:56 more -rwsr-xr-x 1 root root 58912 Oct 18 00:56 mount -rwxr-xr-x 1 root root 13856 Oct 18 00:56 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Mar 29 2024 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Jul 28 2023 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Oct 18 00:56 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Jan 19 2024 tar -rwxr-xr-x 1 root root 13860 Jul 28 2023 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 30236 Oct 18 00:56 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Oct 18 00:56 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/15903/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-exec, dh-python, python3-all-dev, python3-setuptools, python3-numpy, cython3, libhdf5-dev, hdf5-helpers, python3-h5py, python3-biom-format, python3-skbio (>= 0.5.8-3~), python3-iow, libssu-dev (>= 1.2-1~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19554 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-exec; however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on hdf5-helpers; however: Package hdf5-helpers is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-biom-format; however: Package python3-biom-format is not installed. pbuilder-satisfydepends-dummy depends on python3-skbio (>= 0.5.8-3~); however: Package python3-skbio is not installed. pbuilder-satisfydepends-dummy depends on python3-iow; however: Package python3-iow is not installed. pbuilder-satisfydepends-dummy depends on libssu-dev (>= 1.2-1~); however: Package libssu-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libcurl4{a} libcurl4-openssl-dev{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libicu72{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblapacke{a} liblbfgsb0{a} libldap-2.5-0{a} liblzf1{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libopenblas-dev{a} libopenblas-pthread-dev{a} libopenblas0{a} libopenblas0-pthread{a} libpipeline1{a} libpsl5{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libssl-dev{a} libssu-dev{a} libssu0{a} libsub-override-perl{a} libsz2{a} libtmglib3{a} libtool{a} libuchardet0{a} libxml2{a} libxsimd-dev{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-beniget{a} python3-biom-format{a} python3-click{a} python3-colorama{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-gast{a} python3-h5py{a} python3-h5py-serial{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-ply{a} python3-pythran{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-tz{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-bottleneck python3-bs4 python3-html5lib python3-jinja2 python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pil python3-tables wget 0 packages upgraded, 119 newly installed, 0 to remove and 0 not upgraded. Need to get 96.7 MB of archives. After unpacking 539 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: python3-skbio (>= 0.5.8-3~) which is a virtual package and is not provided by any available package Depends: python3-iow which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libcurl4{a} libcurl4-openssl-dev{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libicu72{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblapacke{a} liblbfgsb0{a} libldap-2.5-0{a} liblzf1{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libopenblas-dev{a} libopenblas-pthread-dev{a} libopenblas0{a} libopenblas0-pthread{a} libpipeline1{a} libpsl5{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libssl-dev{a} libssu-dev{a} libssu0{a} libsub-override-perl{a} libsz2{a} libtmglib3{a} libtool{a} libuchardet0{a} libxml2{a} libxsimd-dev{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-beniget{a} python3-biom-format{a} python3-click{a} python3-colorama{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-gast{a} python3-h5py{a} python3-h5py-serial{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-ply{a} python3-pythran{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-tz{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-bottleneck python3-bs4 python3-html5lib python3-jinja2 python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pil python3-tables wget 0 packages upgraded, 119 newly installed, 0 to remove and 0 not upgraded. Need to get 96.7 MB of archives. After unpacking 539 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/15903 and its subdirectories unifrac failed to build from source. removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/bookworm/i386/unifrac_1.2-3.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/bookworm/i386/unifrac_1.2-3.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/unifrac_1.2-3.build1.log.gz' Mon Nov 25 17:12:34 UTC 2024 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 74.3% -- replaced with stdout Mon Nov 25 17:12:34 UTC 2024 W: Downloading the build dependencies failed Mon Nov 25 17:12:34 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Mon Nov 25 17:12:34 UTC 2024 W: Network problems are automatically rescheduled after some hours. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-25 17:12:34] INFO: Starting at 2024-11-25 17:12:34.826179 [2024-11-25 17:12:34] INFO: Generating the pages of 1 package(s) [2024-11-25 17:12:35] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/unifrac_1.3-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/unifrac_1.3-4.diff.gz is missing [2024-11-25 17:12:35] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/unifrac_1.3-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/unifrac_1.3-4.diff.gz is missing [2024-11-25 17:12:35] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/unifrac_1.3-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/unifrac_1.3-4.diff.gz is missing [2024-11-25 17:12:35] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/unifrac_1.3-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/unifrac_1.3-4.diff.gz is missing [2024-11-25 17:12:35] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/unifrac_1.2-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/unifrac_1.2-3.diff.gz is missing [2024-11-25 17:12:35] CRITICAL: https://tests.reproducible-builds.org/debian/bookworm/i386/unifrac didn't produce a buildlog, even though it has been built. [2024-11-25 17:12:35] INFO: Finished at 2024-11-25 17:12:35.355352, took: 0:00:00.529177 Mon Nov 25 17:12:35 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/bookworm/i386/unifrac.html Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/bookworm/i386/unifrac_1.2-3.rbuild.log: 70.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/bookworm/i386/unifrac_1.2-3.rbuild.log.gz [2024-11-25 17:12:35] INFO: Starting at 2024-11-25 17:12:35.714531 [2024-11-25 17:12:35] INFO: Generating the pages of 1 package(s) [2024-11-25 17:12:36] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/unifrac_1.3-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/unifrac_1.3-4.diff.gz is missing [2024-11-25 17:12:36] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/unifrac_1.3-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/unifrac_1.3-4.diff.gz is missing [2024-11-25 17:12:36] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/unifrac_1.3-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/unifrac_1.3-4.diff.gz is missing [2024-11-25 17:12:36] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/unifrac_1.3-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/unifrac_1.3-4.diff.gz is missing [2024-11-25 17:12:36] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/unifrac_1.2-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/unifrac_1.2-3.diff.gz is missing [2024-11-25 17:12:36] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/unifrac_1.2-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/unifrac_1.2-3.diff.gz is missing [2024-11-25 17:12:36] INFO: Finished at 2024-11-25 17:12:36.220209, took: 0:00:00.505682 All cleanup done. Mon Nov 25 17:12:36 UTC 2024 - total duration: 0h 0m 48s. Mon Nov 25 17:12:36 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-YwOTehfa, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 49.487s CPU time consumed: 5.049s