Running as unit: rb-build-i386_15-48654.service ==================================================================================== Mon Nov 25 19:21:01 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_i386_15) on jenkins, called using "infom07-i386 infom08-i386" as arguments. Mon Nov 25 19:21:01 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-3kZn3PBH" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Nov 25 19:21:01 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom07-i386.debian.net is marked as down. Mon Nov 25 19:21:01 UTC 2024 - checking via ssh if infom07-i386.debian.net is up. removed '/tmp/read-only-fs-test-ieTU2k' Mon Nov 25 19:21:02 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom08-i386.debian.net is marked as down. Mon Nov 25 19:21:02 UTC 2024 - checking via ssh if infom08-i386.debian.net is up. removed '/tmp/read-only-fs-test-p68ZAx' ok, let's check if btllib is building anywhere yet… ok, btllib is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of btllib in unstable on i386 on jenkins now. 1st build will be done on infom07-i386.debian.net. 2nd build will be done on infom08-i386.debian.net. ============================================================================= Mon Nov 25 19:21:06 UTC 2024 I: starting to build btllib/unstable/i386 on jenkins on '2024-11-25 19:21' Mon Nov 25 19:21:06 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_15/48654/console.log 1732562466 i386 unstable btllib Mon Nov 25 19:21:06 UTC 2024 I: Downloading source for unstable/btllib=1.4.10+dfsg-1 --2024-11-25 19:21:06-- http://deb.debian.org/debian/pool/main/b/btllib/btllib_1.4.10%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2161 (2.1K) [text/prs.lines.tag] Saving to: ‘btllib_1.4.10+dfsg-1.dsc’ 0K .. 100% 297M=0s 2024-11-25 19:21:06 (297 MB/s) - ‘btllib_1.4.10+dfsg-1.dsc’ saved [2161/2161] --2024-11-25 19:21:06-- http://deb.debian.org/debian/pool/main/b/btllib/btllib_1.4.10%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2161 (2.1K) [text/prs.lines.tag] Saving to: ‘btllib_1.4.10+dfsg-1.dsc’ 0K .. 100% 297M=0s 2024-11-25 19:21:06 (297 MB/s) - ‘btllib_1.4.10+dfsg-1.dsc’ saved [2161/2161] Mon Nov 25 19:21:06 UTC 2024 I: btllib_1.4.10+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: btllib Binary: libbtllib-dev, btllib-tools Architecture: any Version: 1.4.10+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/bcgsc/btllib Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/btllib Vcs-Git: https://salsa.debian.org/med-team/btllib.git Build-Depends: debhelper-compat (= 13), dh-exec, meson, ninja-build, libcpptoml-dev, libomp-dev, samtools Package-List: btllib-tools deb science optional arch=any libbtllib-dev deb libdevel optional arch=any-amd64,arm64,mips64el,ppc64el,s390x,ia64,ppc64,riscv64,sparc64,alpha Checksums-Sha1: b4dc0dbae9ca4543be0ecf20f48396fadcdeb6a2 209360 btllib_1.4.10+dfsg.orig.tar.xz 0551566c884a2b7acb54d90bc8aee15c56db73b7 3268 btllib_1.4.10+dfsg-1.debian.tar.xz Checksums-Sha256: 6eba5c5626680c3edf8dda9de6af05b401a560986ea77770c14c053e7ba9743c 209360 btllib_1.4.10+dfsg.orig.tar.xz cce781d2defaf1b8192af143662f5dc1fc172f3a44c3d977e08dc33bc57536ff 3268 btllib_1.4.10+dfsg-1.debian.tar.xz Files: e3ce32eaf3f812264056fe26758b7483 209360 btllib_1.4.10+dfsg.orig.tar.xz 79076576244cd8561bfda4c8e55b5b45 3268 btllib_1.4.10+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmPbc0sRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFPzw//TYsmwEOKs9yojPq6Ee9leadja7dxJSjy QSQGunYss5zzGubViyhMZKwtWQrhxj7eMtWDEcZzruC76CNNEUuSkgKQm7PimdSM INSOx0iFAJX0qcHadLrdqP3lQU6ZX4fIlD/KSZ8vTU+Cv+1jJhrj2lByatE3r8TO ZgnXLaOuIBLwrbrgDkwdhNWvs1G3plcCY6WWObpro4CCaIrLGQ0lv3Rl4ucKMgAs wplM9vQm9GCHekXHU9/iXU5nlGC/161CaXn0PIvhw78LMcVGnUeRLavbhoNgHjlE lrrU2zshltXbqjq7Y3ccMSM8Sqe9u3U6NJ2emfixQFx6YWFaEJ5UgWAvwndg9qwn YxGIBco9iH3wpqGgYX8nkSiHlptK7WLsSR1Z48Vw2rfJ0upDIYAfvMsVfG9FMs1r vNhwCiBtxnbkjhp79laA5P7ouMPziROuMzBkk+HMAaPPfyswFeIJ7U3xDLQ/Fdf2 JAn1+nTxKoNRo98GgiJTlID/OOYD9ppi0xsfaJrcnsQii54J77LnapLbdcCZPiJt mzPAPPRLP+fZFFm3tkE0iJ6PQeVZPKtygfre3Y6iCjPf1PIvrSk9GogBYTOoyPAh lfOLCNPS2Ayunj/CqQ6pQmROGrw8f0pdvMCz0NL+/Wz4SJAAC8QWWUlDKY/lnMnA /1BdXWdxUGs= =1qap -----END PGP SIGNATURE----- Mon Nov 25 19:21:06 UTC 2024 I: Checking whether the package is not for us Mon Nov 25 19:21:06 UTC 2024 I: Starting 1st build on remote node infom07-i386.debian.net. Mon Nov 25 19:21:06 UTC 2024 I: Preparing to do remote build '1' on infom07-i386.debian.net. Mon Nov 25 19:21:06 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom07-i386.debian.net is marked as down. Mon Nov 25 19:21:06 UTC 2024 - checking via ssh if infom07-i386.debian.net is up. removed '/tmp/read-only-fs-test-e4FhMg' ==================================================================================== Mon Nov 25 19:21:08 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom07-i386, called using "1 btllib unstable /srv/reproducible-results/rbuild-debian/r-b-build.RzFn8q3O 1.4.10+dfsg-1" as arguments. Mon Nov 25 19:21:08 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-ebFMwlUH" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Nov 25 19:21:08 UTC 2024 I: Downloading source for unstable/btllib=1.4.10+dfsg-1 Reading package lists... NOTICE: 'btllib' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/btllib.git Please use: git clone https://salsa.debian.org/med-team/btllib.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 215 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main btllib 1.4.10+dfsg-1 (dsc) [2161 B] Get:2 http://deb.debian.org/debian unstable/main btllib 1.4.10+dfsg-1 (tar) [209 kB] Get:3 http://deb.debian.org/debian unstable/main btllib 1.4.10+dfsg-1 (diff) [3268 B] Fetched 215 kB in 0s (474 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'btllib' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/btllib.git Please use: git clone https://salsa.debian.org/med-team/btllib.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 215 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main btllib 1.4.10+dfsg-1 (dsc) [2161 B] Get:2 http://deb.debian.org/debian unstable/main btllib 1.4.10+dfsg-1 (tar) [209 kB] Get:3 http://deb.debian.org/debian unstable/main btllib 1.4.10+dfsg-1 (diff) [3268 B] Fetched 215 kB in 0s (474 kB/s) Download complete and in download only mode ============================================================================= Building btllib in unstable on i386 on infom07-i386 now. Date: Mon Nov 25 19:21:09 UTC 2024 Date UTC: Mon Nov 25 19:21:09 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Mon Nov 25 07:21:10 -12 2024 I: pbuilder-time-stamp: 1732562470 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [btllib_1.4.10+dfsg-1.dsc] I: copying [./btllib_1.4.10+dfsg.orig.tar.xz] I: copying [./btllib_1.4.10+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Feb 2 08:24:43 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./btllib_1.4.10+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting btllib in btllib-1.4.10+dfsg dpkg-source: info: unpacking btllib_1.4.10+dfsg.orig.tar.xz dpkg-source: info: unpacking btllib_1.4.10+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying find_object_files_at_right_loc.patch dpkg-source: info: applying use_debian_packaged_libs.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/20111/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='dcb927d197fb40f596a6527499dbe37f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='20111' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RzFn8q3O/pbuilderrc_UNkB --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RzFn8q3O/b1 --logfile b1/build.log btllib_1.4.10+dfsg-1.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom07-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/20111/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-exec, meson, ninja-build, libcpptoml-dev, libomp-dev, samtools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19951 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-exec; however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on meson; however: Package meson is not installed. pbuilder-satisfydepends-dummy depends on ninja-build; however: Package ninja-build is not installed. pbuilder-satisfydepends-dummy depends on libcpptoml-dev; however: Package libcpptoml-dev is not installed. pbuilder-satisfydepends-dummy depends on libomp-dev; however: Package libomp-dev is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcpptoml-dev{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libomp-16-dev{a} libomp-dev{a} libomp5-16t64{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} meson{a} netbase{a} ninja-build{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} samtools{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 87 newly installed, 0 to remove and 0 not upgraded. Need to get 35.3 MB of archives. After unpacking 136 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 libpython3.12-minimal i386 3.12.7-3 [814 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.6.4-1 [107 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 python3.12-minimal i386 3.12.7-3 [2236 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 python3-minimal i386 3.12.7-1 [26.8 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 libcom-err2 i386 1.47.1-1+b1 [23.4 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Get: 12 http://deb.debian.org/debian unstable/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 libtirpc3t64 i386 1.3.4+ds-1.3+b1 [90.5 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 libnsl2 i386 1.3.0-3+b3 [42.7 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 libreadline8t64 i386 8.2-5 [173 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 libpython3.12-stdlib i386 3.12.7-3 [1964 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 python3.12 i386 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 libpython3-stdlib i386 3.12.7-1 [9712 B] Get: 22 http://deb.debian.org/debian unstable/main i386 python3 i386 3.12.7-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.2-11 [95.6 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-4 [293 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 autopoint all 0.22.5-2 [723 kB] Get: 38 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 39 http://deb.debian.org/debian unstable/main i386 libtool all 2.4.7-8 [517 kB] Get: 40 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 43 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 44 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 45 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 46 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-5+b1 [9583 kB] Get: 47 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 48 http://deb.debian.org/debian unstable/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 49 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian unstable/main i386 debhelper all 13.20 [915 kB] Get: 52 http://deb.debian.org/debian unstable/main i386 dh-exec i386 0.30 [26.2 kB] Get: 53 http://deb.debian.org/debian unstable/main i386 libbrotli1 i386 1.1.0-2+b6 [308 kB] Get: 54 http://deb.debian.org/debian unstable/main i386 libcpptoml-dev all 0.1.1-3 [180 kB] Get: 55 http://deb.debian.org/debian unstable/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8 [20.6 kB] Get: 56 http://deb.debian.org/debian unstable/main i386 libsasl2-2 i386 2.1.28+dfsg1-8 [61.0 kB] Get: 57 http://deb.debian.org/debian unstable/main i386 libldap-2.5-0 i386 2.5.18+dfsg-3+b1 [200 kB] Get: 58 http://deb.debian.org/debian unstable/main i386 libnghttp2-14 i386 1.64.0-1 [82.4 kB] Get: 59 http://deb.debian.org/debian unstable/main i386 libnghttp3-9 i386 1.4.0-1+b1 [74.9 kB] Get: 60 http://deb.debian.org/debian unstable/main i386 libngtcp2-16 i386 1.6.0-1 [154 kB] Get: 61 http://deb.debian.org/debian unstable/main i386 libngtcp2-crypto-gnutls8 i386 1.6.0-1 [20.2 kB] Get: 62 http://deb.debian.org/debian unstable/main i386 libpsl5t64 i386 0.21.2-1.1+b1 [57.7 kB] Get: 63 http://deb.debian.org/debian unstable/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b5 [62.4 kB] Get: 64 http://deb.debian.org/debian unstable/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB] Get: 65 http://deb.debian.org/debian unstable/main i386 libcurl3t64-gnutls i386 8.11.0-1 [403 kB] Get: 66 http://deb.debian.org/debian unstable/main i386 libdeflate0 i386 1.22-1 [48.1 kB] Get: 67 http://deb.debian.org/debian unstable/main i386 libhtscodecs2 i386 1.6.1-1 [70.8 kB] Get: 68 http://deb.debian.org/debian unstable/main i386 libhts3t64 i386 1.20+ds-2 [500 kB] Get: 69 http://deb.debian.org/debian unstable/main i386 libncurses6 i386 6.5-2+b1 [112 kB] Get: 70 http://deb.debian.org/debian unstable/main i386 libomp5-16t64 i386 1:16.0.6-27+b1 [418 kB] Get: 71 http://deb.debian.org/debian unstable/main i386 libpython3.12t64 i386 3.12.7-3 [2170 kB] Get: 72 http://deb.debian.org/debian unstable/main i386 libomp-16-dev i386 1:16.0.6-27+b1 [122 kB] Get: 73 http://deb.debian.org/debian unstable/main i386 libomp-dev i386 1:16.0-58.1 [4960 B] Get: 74 http://deb.debian.org/debian unstable/main i386 ninja-build i386 1.12.1-1 [153 kB] Get: 75 http://deb.debian.org/debian unstable/main i386 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 76 http://deb.debian.org/debian unstable/main i386 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 77 http://deb.debian.org/debian unstable/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 78 http://deb.debian.org/debian unstable/main i386 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 79 http://deb.debian.org/debian unstable/main i386 python3-inflect all 7.3.1-2 [32.4 kB] Get: 80 http://deb.debian.org/debian unstable/main i386 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 81 http://deb.debian.org/debian unstable/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 82 http://deb.debian.org/debian unstable/main i386 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 83 http://deb.debian.org/debian unstable/main i386 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 84 http://deb.debian.org/debian unstable/main i386 python3-zipp all 3.21.0-1 [10.6 kB] Get: 85 http://deb.debian.org/debian unstable/main i386 python3-setuptools all 75.2.0-1 [731 kB] Get: 86 http://deb.debian.org/debian unstable/main i386 meson all 1.6.0-1 [628 kB] Get: 87 http://deb.debian.org/debian unstable/main i386 samtools i386 1.20-3 [688 kB] Fetched 35.3 MB in 0s (73.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19951 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_i386.deb ... Unpacking libpython3.12-minimal:i386 (3.12.7-3) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.6.4-1_i386.deb ... Unpacking libexpat1:i386 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_i386.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:i386 (3.12.7-3) ... Setting up libexpat1:i386 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20271 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_i386.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../04-libkrb5support0_1.21.3-3_i386.deb ... Unpacking libkrb5support0:i386 (1.21.3-3) ... Selecting previously unselected package libcom-err2:i386. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_i386.deb ... Unpacking libcom-err2:i386 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../06-libk5crypto3_1.21.3-3_i386.deb ... Unpacking libk5crypto3:i386 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../07-libkeyutils1_1.6.3-4_i386.deb ... Unpacking libkeyutils1:i386 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../08-libkrb5-3_1.21.3-3_i386.deb ... Unpacking libkrb5-3:i386 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:i386. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3 to /lib/i386-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3.0.0 to /lib/i386-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:i386 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:i386. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_i386.deb ... Unpacking libnsl2:i386 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:i386. Preparing to unpack .../14-libreadline8t64_8.2-5_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:i386. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_i386.deb ... Unpacking libpython3.12-stdlib:i386 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_i386.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../17-libpython3-stdlib_3.12.7-1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.12.7-1) ... Setting up python3-minimal (3.12.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21333 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.7-1_i386.deb ... Unpacking python3 (3.12.7-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3+b1_i386.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.22.5-2_i386.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-5_i386.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.40.2-11_i386.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../09-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../22-libelf1t64_0.192-4_i386.deb ... Unpacking libelf1t64:i386 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../24-libicu72_72.1-5+b1_i386.deb ... Unpacking libicu72:i386 (72.1-5+b1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_i386.deb ... Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.22.5-2_i386.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package dh-exec. Preparing to unpack .../30-dh-exec_0.30_i386.deb ... Unpacking dh-exec (0.30) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../31-libbrotli1_1.1.0-2+b6_i386.deb ... Unpacking libbrotli1:i386 (1.1.0-2+b6) ... Selecting previously unselected package libcpptoml-dev. Preparing to unpack .../32-libcpptoml-dev_0.1.1-3_all.deb ... Unpacking libcpptoml-dev (0.1.1-3) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../33-libsasl2-modules-db_2.1.28+dfsg1-8_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg1-8) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../34-libsasl2-2_2.1.28+dfsg1-8_i386.deb ... Unpacking libsasl2-2:i386 (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:i386. Preparing to unpack .../35-libldap-2.5-0_2.5.18+dfsg-3+b1_i386.deb ... Unpacking libldap-2.5-0:i386 (2.5.18+dfsg-3+b1) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../36-libnghttp2-14_1.64.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.64.0-1) ... Selecting previously unselected package libnghttp3-9:i386. Preparing to unpack .../37-libnghttp3-9_1.4.0-1+b1_i386.deb ... Unpacking libnghttp3-9:i386 (1.4.0-1+b1) ... Selecting previously unselected package libngtcp2-16:i386. Preparing to unpack .../38-libngtcp2-16_1.6.0-1_i386.deb ... Unpacking libngtcp2-16:i386 (1.6.0-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:i386. Preparing to unpack .../39-libngtcp2-crypto-gnutls8_1.6.0-1_i386.deb ... Unpacking libngtcp2-crypto-gnutls8:i386 (1.6.0-1) ... Selecting previously unselected package libpsl5t64:i386. Preparing to unpack .../40-libpsl5t64_0.21.2-1.1+b1_i386.deb ... Unpacking libpsl5t64:i386 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../41-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:i386. Preparing to unpack .../42-libssh2-1t64_1.11.1-1_i386.deb ... Unpacking libssh2-1t64:i386 (1.11.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:i386. Preparing to unpack .../43-libcurl3t64-gnutls_8.11.0-1_i386.deb ... Unpacking libcurl3t64-gnutls:i386 (8.11.0-1) ... Selecting previously unselected package libdeflate0:i386. Preparing to unpack .../44-libdeflate0_1.22-1_i386.deb ... Unpacking libdeflate0:i386 (1.22-1) ... Selecting previously unselected package libhtscodecs2:i386. Preparing to unpack .../45-libhtscodecs2_1.6.1-1_i386.deb ... Unpacking libhtscodecs2:i386 (1.6.1-1) ... Selecting previously unselected package libhts3t64:i386. Preparing to unpack .../46-libhts3t64_1.20+ds-2_i386.deb ... Unpacking libhts3t64:i386 (1.20+ds-2) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../47-libncurses6_6.5-2+b1_i386.deb ... Unpacking libncurses6:i386 (6.5-2+b1) ... Selecting previously unselected package libomp5-16t64:i386. Preparing to unpack .../48-libomp5-16t64_1%3a16.0.6-27+b1_i386.deb ... Unpacking libomp5-16t64:i386 (1:16.0.6-27+b1) ... Selecting previously unselected package libpython3.12t64:i386. Preparing to unpack .../49-libpython3.12t64_3.12.7-3_i386.deb ... Unpacking libpython3.12t64:i386 (3.12.7-3) ... Selecting previously unselected package libomp-16-dev. Preparing to unpack .../50-libomp-16-dev_1%3a16.0.6-27+b1_i386.deb ... Unpacking libomp-16-dev (1:16.0.6-27+b1) ... Selecting previously unselected package libomp-dev:i386. Preparing to unpack .../51-libomp-dev_1%3a16.0-58.1_i386.deb ... Unpacking libomp-dev:i386 (1:16.0-58.1) ... Selecting previously unselected package ninja-build. Preparing to unpack .../52-ninja-build_1.12.1-1_i386.deb ... Unpacking ninja-build (1.12.1-1) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../53-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../54-python3-more-itertools_10.5.0-1_all.deb ... Unpacking python3-more-itertools (10.5.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../55-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../56-python3-typeguard_4.4.1-1_all.deb ... Unpacking python3-typeguard (4.4.1-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../57-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../58-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../59-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../60-python3-pkg-resources_75.2.0-1_all.deb ... Unpacking python3-pkg-resources (75.2.0-1) ... Selecting previously unselected package python3-jaraco.text. Preparing to unpack .../61-python3-jaraco.text_4.0.0-1_all.deb ... Unpacking python3-jaraco.text (4.0.0-1) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../62-python3-zipp_3.21.0-1_all.deb ... Unpacking python3-zipp (3.21.0-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../63-python3-setuptools_75.2.0-1_all.deb ... Unpacking python3-setuptools (75.2.0-1) ... Selecting previously unselected package meson. Preparing to unpack .../64-meson_1.6.0-1_all.deb ... Unpacking meson (1.6.0-1) ... Selecting previously unselected package samtools. Preparing to unpack .../65-samtools_1.20-3_i386.deb ... Unpacking samtools (1.20-3) ... Setting up libhtscodecs2:i386 (1.6.1-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:i386 (1.5.8-1) ... Setting up libkeyutils1:i386 (1.6.3-4) ... Setting up libicu72:i386 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:i386 (1.1.0-2+b6) ... Setting up libmagic1t64:i386 (1:5.45-3+b1) ... Setting up libpsl5t64:i386 (0.21.2-1.1+b1) ... Setting up libnghttp2-14:i386 (1.64.0-1) ... Setting up libdeflate0:i386 (1.22-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:i386 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up ninja-build (1.12.1-1) ... Setting up libelf1t64:i386 (0.192-4) ... Setting up libkrb5support0:i386 (1.21.3-3) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Nov 25 19:21:28 UTC 2024. Universal Time is now: Mon Nov 25 19:21:28 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libomp5-16t64:i386 (1:16.0.6-27+b1) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libcpptoml-dev (0.1.1-3) ... Setting up libncurses6:i386 (6.5-2+b1) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:i386 (1.21.3-3) ... Setting up libsasl2-2:i386 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:i386 (1.4.0-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b2) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:i386 (1.6.0-1) ... Setting up libkrb5-3:i386 (1.21.3-3) ... Setting up libssh2-1t64:i386 (1.11.1-1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libngtcp2-crypto-gnutls8:i386 (1.6.0-1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up libldap-2.5-0:i386 (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:i386 (1.21.3-3) ... Setting up libreadline8t64:i386 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libtirpc3t64:i386 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3t64-gnutls:i386 (8.11.0-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:i386 (1.3.0-3+b3) ... Setting up libhts3t64:i386 (1.20+ds-2) ... Setting up libpython3.12-stdlib:i386 (3.12.7-3) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up dh-exec (0.30) ... Setting up samtools (1.20-3) ... Setting up libpython3.12t64:i386 (3.12.7-3) ... Setting up libpython3-stdlib:i386 (3.12.7-1) ... Setting up libomp-16-dev (1:16.0.6-27+b1) ... Setting up python3 (3.12.7-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up libomp-dev:i386 (1:16.0-58.1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up meson (1.6.0-1) ... Processing triggers for libc-bin (2.40-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/btllib-1.4.10+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../btllib_1.4.10+dfsg-1_source.changes dpkg-buildpackage: info: source package btllib dpkg-buildpackage: info: source version 1.4.10+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-i686-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 meson setup .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/i386-linux-gnu -Dpython.bytecompile=-1 The Meson build system Version: 1.6.0 Source dir: /build/reproducible-path/btllib-1.4.10+dfsg Build dir: /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu Build type: native build Project name: btllib Project version: 1.4.9 C++ compiler for the host machine: c++ (gcc 14.2.0 "c++ (Debian 14.2.0-8) 14.2.0") C++ linker for the host machine: c++ ld.bfd 2.43.1 Host machine cpu family: x86 Host machine cpu: i686 Configuring config.hpp using configuration Run-time dependency threads found: YES Run-time dependency OpenMP found: YES 4.5 Program samtools found: YES (/usr/bin/samtools) Program gzip found: YES (/usr/bin/gzip) Program xz found: YES (/usr/bin/xz) Program bzip2 found: YES (/usr/bin/bzip2) Program tar found: YES (/usr/bin/tar) Program swig found: NO Program doxygen found: NO WARNING: You should add the boolean check kwarg to the run_command call. It currently defaults to false, but it will default to true in meson 2.0. See also: https://github.com/mesonbuild/meson/issues/9300 Program python3 found: YES (/usr/bin/python3) Program python3-config found: NO Message: python3-config not found, skipping Python wrappers. Build targets in project: 23 btllib 1.4.9 User defined options buildtype : plain libdir : lib/i386-linux-gnu localstatedir : /var prefix : /usr python.bytecompile: -1 sysconfdir : /etc wrap_mode : nodownload Found ninja-1.12.1 at /usr/bin/ninja dh_auto_build cd obj-i686-linux-gnu && LC_ALL=C.UTF-8 ninja -j6 -v [1/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_multiline_fastq_module.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_multiline_fastq_module.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_multiline_fastq_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/seq_reader_multiline_fastq_module.cpp [2/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_cstring.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_cstring.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_cstring.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/cstring.cpp [3/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/seq.cpp [4/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_fastq_module.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_fastq_module.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_fastq_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/seq_reader_fastq_module.cpp [5/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_sam_module.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_sam_module.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_sam_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/seq_reader_sam_module.cpp [6/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_status.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_status.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_status.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/status.cpp [7/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_multiline_fasta_module.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_multiline_fasta_module.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_multiline_fasta_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/seq_reader_multiline_fasta_module.cpp [8/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_writer.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_writer.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_writer.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/seq_writer.cpp [9/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_data_stream.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_data_stream.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_data_stream.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/data_stream.cpp [10/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_util.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_util.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_util.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/util.cpp [11/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/nthash.cpp [12/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_fasta_module.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_fasta_module.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_fasta_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/seq_reader_fasta_module.cpp [13/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash_consts.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash_consts.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash_consts.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/nthash_consts.cpp [14/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash_lowlevel.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash_lowlevel.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash_lowlevel.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/nthash_lowlevel.cpp [15/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_gfa2_module.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_gfa2_module.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_gfa2_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/seq_reader_gfa2_module.cpp [16/51] c++ -Itests/cstring_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/cstring_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_cstring.cpp.o -MF tests/cstring_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_cstring.cpp.o.d -o tests/cstring_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_cstring.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/cstring.cpp [17/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_process_pipeline.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_process_pipeline.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_process_pipeline.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/process_pipeline.cpp [18/51] c++ -Itests/seq_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/seq_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq.cpp.o -MF tests/seq_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq.cpp.o.d -o tests/seq_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/seq.cpp [19/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/seq_reader.cpp [20/51] c++ -Itests/data_stream_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/data_stream_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_data_stream.cpp.o -MF tests/data_stream_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_data_stream.cpp.o.d -o tests/data_stream_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_data_stream.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/data_stream.cpp [21/51] c++ -Itests/seq_reader_sam_module_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/seq_reader_sam_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_sam_module.cpp.o -MF tests/seq_reader_sam_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_sam_module.cpp.o.d -o tests/seq_reader_sam_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_sam_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/seq_reader_sam_module.cpp [22/51] c++ -Itests/seq_reader_multiline_fastq_module_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/seq_reader_multiline_fastq_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_multiline_fastq_module.cpp.o -MF tests/seq_reader_multiline_fastq_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_multiline_fastq_module.cpp.o.d -o tests/seq_reader_multiline_fastq_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_multiline_fastq_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/seq_reader_multiline_fastq_module.cpp [23/51] c++ -Itests/nthash_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/nthash_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_nthash.cpp.o -MF tests/nthash_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_nthash.cpp.o.d -o tests/nthash_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_nthash.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/nthash.cpp [24/51] c++ -Itests/seq_reader_multiline_fasta_module_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/seq_reader_multiline_fasta_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_multiline_fasta_module.cpp.o -MF tests/seq_reader_multiline_fasta_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_multiline_fasta_module.cpp.o.d -o tests/seq_reader_multiline_fasta_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_multiline_fasta_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/seq_reader_multiline_fasta_module.cpp [25/51] c++ -Irecipes/indexlr.p -Irecipes -I../recipes -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ recipes/indexlr.p/_build_reproducible-path_btllib-1.4.10+dfsg_recipes_indexlr.cpp.o -MF recipes/indexlr.p/_build_reproducible-path_btllib-1.4.10+dfsg_recipes_indexlr.cpp.o.d -o recipes/indexlr.p/_build_reproducible-path_btllib-1.4.10+dfsg_recipes_indexlr.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/recipes/indexlr.cpp [26/51] c++ -Itests/seq_reader_fastq_module_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/seq_reader_fastq_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_fastq_module.cpp.o -MF tests/seq_reader_fastq_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_fastq_module.cpp.o.d -o tests/seq_reader_fastq_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_fastq_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/seq_reader_fastq_module.cpp [27/51] c++ -Itests/util_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/util_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_util.cpp.o -MF tests/util_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_util.cpp.o.d -o tests/util_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_util.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/util.cpp [28/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_bloom_filter.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_bloom_filter.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_bloom_filter.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/bloom_filter.cpp [29/51] rm -f libbtllib.a && gcc-ar csrD libbtllib.a libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_cstring.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_multiline_fastq_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_status.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_data_stream.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_process_pipeline.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_sam_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_fastq_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_multiline_fasta_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_writer.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_bloom_filter.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_util.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash_lowlevel.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_fasta_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_gfa2_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash_consts.cpp.o [30/51] c++ -Itests/seq_writer_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/seq_writer_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_writer.cpp.o -MF tests/seq_writer_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_writer.cpp.o.d -o tests/seq_writer_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_writer.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/seq_writer.cpp [31/51] c++ -o recipes/indexlr recipes/indexlr.p/_build_reproducible-path_btllib-1.4.10+dfsg_recipes_indexlr.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [32/51] c++ -o tests/cstring_test tests/cstring_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_cstring.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [33/51] c++ -o tests/seq_test tests/seq_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [34/51] c++ -o tests/seq_reader_multiline_fastq_module_test tests/seq_reader_multiline_fastq_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_multiline_fastq_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [35/51] c++ -o tests/nthash_test tests/nthash_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_nthash.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [36/51] c++ -Itests/seq_reader_gfa2_module_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/seq_reader_gfa2_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_gfa2_module.cpp.o -MF tests/seq_reader_gfa2_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_gfa2_module.cpp.o.d -o tests/seq_reader_gfa2_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_gfa2_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/seq_reader_gfa2_module.cpp [37/51] c++ -Itests/seq_reader_fasta_module_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/seq_reader_fasta_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_fasta_module.cpp.o -MF tests/seq_reader_fasta_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_fasta_module.cpp.o.d -o tests/seq_reader_fasta_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_fasta_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/seq_reader_fasta_module.cpp [38/51] c++ -o tests/data_stream_test tests/data_stream_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_data_stream.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [39/51] c++ -o tests/seq_reader_sam_module_test tests/seq_reader_sam_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_sam_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [40/51] c++ -o tests/seq_reader_fastq_module_test tests/seq_reader_fastq_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_fastq_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [41/51] c++ -o tests/seq_reader_multiline_fasta_module_test tests/seq_reader_multiline_fasta_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_multiline_fasta_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [42/51] c++ -o tests/seq_writer_test tests/seq_writer_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_writer.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [43/51] c++ -o tests/util_test tests/util_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_util.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [44/51] c++ -o tests/seq_reader_fasta_module_test tests/seq_reader_fasta_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_fasta_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [45/51] c++ -o tests/seq_reader_gfa2_module_test tests/seq_reader_gfa2_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_gfa2_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [46/51] c++ -Itests/bloom_filter_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/bloom_filter_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_bloom_filter.cpp.o -MF tests/bloom_filter_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_bloom_filter.cpp.o.d -o tests/bloom_filter_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_bloom_filter.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/bloom_filter.cpp [47/51] c++ -o tests/bloom_filter_test tests/bloom_filter_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_bloom_filter.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [48/51] c++ -Itests/counting_bloom_filter_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/counting_bloom_filter_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_counting_bloom_filter.cpp.o -MF tests/counting_bloom_filter_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_counting_bloom_filter.cpp.o.d -o tests/counting_bloom_filter_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_counting_bloom_filter.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/counting_bloom_filter.cpp [49/51] c++ -o tests/counting_bloom_filter_test tests/counting_bloom_filter_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_counting_bloom_filter.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [50/51] c++ -Itests/indexlr_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/indexlr_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_indexlr.cpp.o -MF tests/indexlr_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_indexlr.cpp.o.d -o tests/indexlr_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_indexlr.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/indexlr.cpp [51/51] c++ -o tests/indexlr_test tests/indexlr_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_indexlr.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/btllib-1.4.10+dfsg' cp -a tests/ obj-*/ dh_auto_test cd obj-i686-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 MESON_TESTTHREADS=6 meson test ninja: Entering directory `/build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu' ninja: no work to do. 1/15 cstring OK 0.02s 2/15 seq OK 0.02s 3/15 nthash OK 0.02s 4/15 data_stream OK 0.05s 5/15 bloom_filter OK 0.09s 6/15 util OK 0.01s 7/15 seq_writer TIMEOUT 30.10s killed by signal 15 SIGTERM >>> MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=25 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/seq_writer_test 8/15 seq_reader_multiline_fastq_module TIMEOUT 30.12s killed by signal 15 SIGTERM >>> MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=7 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/seq_reader_multiline_fastq_module_test 9/15 seq_reader_sam_module TIMEOUT 30.15s killed by signal 15 SIGTERM >>> MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=137 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/seq_reader_sam_module_test 10/15 seq_reader_fastq_module TIMEOUT 30.16s killed by signal 15 SIGTERM >>> MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=19 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/seq_reader_fastq_module_test 11/15 seq_reader_multiline_fasta_module TIMEOUT 30.16s killed by signal 15 SIGTERM >>> MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=168 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/seq_reader_multiline_fasta_module_test 12/15 seq_reader_gfa2_module OK 0.04s 13/15 seq_reader_fasta_module TIMEOUT 30.02s killed by signal 15 SIGTERM >>> MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=43 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/seq_reader_fasta_module_test 14/15 counting_bloom_filter OK 0.13s 15/15 indexlr TIMEOUT 30.13s killed by signal 15 SIGTERM >>> MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=142 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/indexlr_test Ok: 8 Expected Fail: 0 Fail: 0 Unexpected Pass: 0 Skipped: 0 Timeout: 7 Full log written to /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/meson-logs/testlog.txt cd obj-i686-linux-gnu && tail -v -n \+0 meson-logs/testlog.txt ==> meson-logs/testlog.txt <== Log of Meson test suite run on 2024-11-25T07:21:52.703008 Inherited environment: DEB_HOST_MULTIARCH=i386-linux-gnu LC_ALL=C.UTF-8 DEB_HOST_GNU_SYSTEM=linux-gnu DEB_BUILD_GNU_TYPE=i686-linux-gnu DEB_TARGET_ARCH_LIBC=gnu FFLAGS='-g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong' SUDO_UID=104 DEB_BUILD_ARCH_ENDIAN=little DEB_BUILD_GNU_SYSTEM=linux-gnu CFLAGS_FOR_BUILD='-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security' OBJCXXFLAGS_FOR_BUILD='-g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security' DEB_BUILD_ARCH_BITS=32 DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DEB_HOST_ARCH=i386 LDFLAGS_FOR_BUILD='-Wl,-z,relro -Wl,-z,now' DEB_TARGET_ARCH_ENDIAN=little PWD=/build/reproducible-path/btllib-1.4.10+dfsg SOURCE_DATE_EPOCH=1675321847 MAIL=/var/mail/root OBJCFLAGS_FOR_BUILD='-g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security' OBJCXXFLAGS='-g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security' OLDPWD=/ PBUILDER_PKGDATADIR=/usr/share/pbuilder DEB_HOST_ARCH_BITS=32 LANG=C MAKEFLAGS=w DEB_TARGET_ARCH=i386 DH_INTERNAL_OPTIONS='' DEB_HOST_GNU_CPU=i686 DEB_BUILD_ARCH_LIBC=gnu BUILDUSERNAME=pbuilder1 MFLAGS=-w DEB_TARGET_ARCH_BITS=32 CXXFLAGS_FOR_BUILD='-g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security' ASFLAGS='' DEB_BUILD_ARCH_CPU=i386 LD_PRELOAD='' DEB_HOST_ARCH_OS=linux SHELL=/bin/bash LD_LIBRARY_PATH=/usr/lib/libeatmydata SHLVL=2 DEB_HOST_ARCH_CPU=i386 FCFLAGS='-g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong' PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PBCURRENTCOMMANDLINEOPERATION=build DEB_BUILD_ARCH_ABI=base LANGUAGE=en_US:en PBUILDER_SYSCONFDIR=/etc CPPFLAGS_FOR_BUILD='-Wdate-time -D_FORTIFY_SOURCE=2' DEB_BUILD_ARCH=i386 FFLAGS_FOR_BUILD='-g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong' DEB_HOST_ARCH_LIBC=gnu TZ=/usr/share/zoneinfo/Etc/GMT+12 INVOCATION_ID=63da272d54264fe6882fd3ea288c8999 SUDO_GID=111 SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RzFn8q3O/pbuilderrc_UNkB --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RzFn8q3O/b1 --logfile b1/build.log btllib_1.4.10+dfsg-1.dsc' DEB_TARGET_ARCH_CPU=i386 DEB_HOST_GNU_TYPE=i686-linux-gnu DEB_BUILD_ARCH_OS=linux FCFLAGS_FOR_BUILD='-g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong' DFLAGS_FOR_BUILD=-frelease LOGNAME=pbuilder1 CPPFLAGS='-Wdate-time -D_FORTIFY_SOURCE=2' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' DEB_TARGET_MULTIARCH=i386-linux-gnu DEB_BUILD_GNU_CPU=i686 DEB_TARGET_ARCH_OS=linux USER=pbuilder1 DEB_HOST_ARCH_ABI=base DEB_BUILD_MULTIARCH=i386-linux-gnu LDFLAGS='-Wl,-z,relro -Wl,-z,now' DEB_TARGET_GNU_TYPE=i686-linux-gnu DEB_TARGET_ARCH_ABI=base _=/usr/bin/unshare CFLAGS='-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security' SUDO_USER=jenkins DFLAGS=-frelease PBUILDER_PKGLIBDIR=/usr/lib/pbuilder DEB_TARGET_GNU_CPU=i686 ASFLAGS_FOR_BUILD='' DEBIAN_FRONTEND=noninteractive HOME=/build/reproducible-path/btllib-1.4.10+dfsg/debian/.debhelper/generated/_source/home DEB_RULES_REQUIRES_ROOT=no DEB_TARGET_GNU_SYSTEM=linux-gnu DEB_HOST_ARCH_ENDIAN=little TERM=unknown OBJCFLAGS='-g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security' DEB_BUILD_MAINT_OPTIONS=hardening=+all DH_INTERNAL_BUILDFLAGS=1 CXXFLAGS='-g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security' DH_INTERNAL_OVERRIDE=dh_auto_test PBUILDER_OPERATION=build MAKELEVEL=2 XDG_RUNTIME_DIR=/tmp/dh-xdg-rundir-hrysRWHo MESON_TESTTHREADS=6 DEB_PYTHON_INSTALL_LAYOUT=deb ==================================== 1/15 ==================================== test: cstring start time: 19:21:52 duration: 0.02s result: exit status 0 command: MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=244 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/cstring_test ============================================================================== ==================================== 2/15 ==================================== test: seq start time: 19:21:52 duration: 0.02s result: exit status 0 command: MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=222 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/seq_test ============================================================================== ==================================== 3/15 ==================================== test: nthash start time: 19:21:52 duration: 0.02s result: exit status 0 command: MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=242 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/nthash_test ----------------------------------- stderr ----------------------------------- ./tests/nthash.cpp: Testing k-mer hash values ./tests/nthash.cpp: Testing k-mer rolling ./tests/nthash.cpp: Testing k-mer rolling vs ntbase hash values ./tests/nthash.cpp: Testing canonical hashing ./tests/nthash.cpp: Testing k-mer back rolling ./tests/nthash.cpp: Testing k-mer peeking ./tests/nthash.cpp: Testing skipping Ns ./tests/nthash.cpp: Testing base substitution Testing RNA ./tests/nthash.cpp: Testing block parsing ./tests/nthash.cpp: Testing spaced seed hash values ./tests/nthash.cpp: Testing spaced seeds ./tests/nthash.cpp: Testing spaced seed back roll Testing rolling spaced seeds vs masked hashing Testing reset function ./tests/nthash.cpp: Testing canonical hashing in spaced seeds ============================================================================== ==================================== 4/15 ==================================== test: data_stream start time: 19:21:52 duration: 0.05s result: exit status 0 command: MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=8 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/data_stream_test ----------------------------------- stderr ----------------------------------- Test .gz write Test .gz read Test .xz write Test .xz read ============================================================================== ==================================== 5/15 ==================================== test: bloom_filter start time: 19:21:52 duration: 0.09s result: exit status 0 command: MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=55 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/bloom_filter_test ----------------------------------- stderr ----------------------------------- Testing BloomFilter Testing KmerBloomFilter Testing SeedBloomFilter Testing KmerBloomFilter with multiple threads False positives = 0 ============================================================================== ==================================== 6/15 ==================================== test: util start time: 19:21:52 duration: 0.01s result: exit status 0 command: MALLOC_PERTURB_=230 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/util_test ============================================================================== ==================================== 7/15 ==================================== test: seq_writer start time: 19:21:52 duration: 30.10s result: killed by signal 15 SIGTERM command: MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=25 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/seq_writer_test ----------------------------------- stderr ----------------------------------- Iteration 1 Test FASTA ============================================================================== ==================================== 8/15 ==================================== test: seq_reader_multiline_fastq_module start time: 19:21:52 duration: 30.12s result: killed by signal 15 SIGTERM command: MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=7 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/seq_reader_multiline_fastq_module_test ----------------------------------- stderr ----------------------------------- Iteration 1 Test multiline FASTQ ============================================================================== ==================================== 9/15 ==================================== test: seq_reader_sam_module start time: 19:21:52 duration: 30.15s result: killed by signal 15 SIGTERM command: MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=137 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/seq_reader_sam_module_test ----------------------------------- stderr ----------------------------------- Iteration 1 Test small SAM [2024-11-25 07:21:52][INFO]  samtools 1.20 Using htslib 1.20 [M::bam2fq_mainloop] discarded 0 singletons [M::bam2fq_mainloop] processed 2 reads ============================================================================== =================================== 10/15 ==================================== test: seq_reader_fastq_module start time: 19:21:52 duration: 30.16s result: killed by signal 15 SIGTERM command: MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=19 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/seq_reader_fastq_module_test ----------------------------------- stderr ----------------------------------- Iteration 1 Test small FASTA and FASTQ simultaneously ============================================================================== =================================== 11/15 ==================================== test: seq_reader_multiline_fasta_module start time: 19:21:52 duration: 30.16s result: killed by signal 15 SIGTERM command: MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=168 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/seq_reader_multiline_fasta_module_test ----------------------------------- stderr ----------------------------------- Iteration 1 Test multiline FASTA ============================================================================== =================================== 12/15 ==================================== test: seq_reader_gfa2_module start time: 19:22:22 duration: 0.04s result: exit status 0 command: MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=19 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/seq_reader_gfa2_module_test ============================================================================== =================================== 13/15 ==================================== test: seq_reader_fasta_module start time: 19:21:52 duration: 30.02s result: killed by signal 15 SIGTERM command: MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=43 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/seq_reader_fasta_module_test ----------------------------------- stderr ----------------------------------- Iteration 1 Test small FASTA ============================================================================== =================================== 14/15 ==================================== test: counting_bloom_filter start time: 19:22:22 duration: 0.13s result: exit status 0 command: MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=163 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/counting_bloom_filter_test ----------------------------------- stderr ----------------------------------- Testing CountingBloomFilter Testing KmerCountingBloomFilter Testing KmerCountingBloomfilter with multiple threads False positives = 0 Seqs with more than 1 presence = 89 ============================================================================== =================================== 15/15 ==================================== test: indexlr start time: 19:22:22 duration: 30.13s result: killed by signal 15 SIGTERM command: MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=142 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/indexlr_test ----------------------------------- stderr ----------------------------------- Testing on empty file [2024-11-25 07:22:22][WARNING] ./tests/empty.fa is empty. ============================================================================== Summary of Failures: 7/15 seq_writer TIMEOUT 30.10s killed by signal 15 SIGTERM 8/15 seq_reader_multiline_fastq_module TIMEOUT 30.12s killed by signal 15 SIGTERM 9/15 seq_reader_sam_module TIMEOUT 30.15s killed by signal 15 SIGTERM 10/15 seq_reader_fastq_module TIMEOUT 30.16s killed by signal 15 SIGTERM 11/15 seq_reader_multiline_fasta_module TIMEOUT 30.16s killed by signal 15 SIGTERM 13/15 seq_reader_fasta_module TIMEOUT 30.02s killed by signal 15 SIGTERM 15/15 indexlr TIMEOUT 30.13s killed by signal 15 SIGTERM Ok: 8 Expected Fail: 0 Fail: 0 Unexpected Pass: 0 Skipped: 0 Timeout: 7 dh_auto_test: error: cd obj-i686-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 MESON_TESTTHREADS=6 meson test returned exit code 7 make[1]: *** [debian/rules:12: override_dh_auto_test] Error 25 make[1]: Leaving directory '/build/reproducible-path/btllib-1.4.10+dfsg' make: *** [debian/rules:8: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/20111 and its subdirectories Starting cleanup. All cleanup done. Mon Nov 25 19:22:54 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-ebFMwlUH, removing. /srv/reproducible-results/rbuild-debian/r-b-build.RzFn8q3O: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 25 19:22 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 25 19:21 b2 -rw-r--r-- 1 jenkins jenkins 2161 Feb 2 2023 btllib_1.4.10+dfsg-1.dsc -rw------- 1 jenkins jenkins 3284 Nov 25 19:21 rbuildlog.Wl8gRvJ /srv/reproducible-results/rbuild-debian/r-b-build.RzFn8q3O/b1: total 96 -rw-r--r-- 1 jenkins jenkins 97114 Nov 25 19:22 build.log /srv/reproducible-results/rbuild-debian/r-b-build.RzFn8q3O/b2: total 0 Mon Nov 25 19:22:55 UTC 2024 I: Deleting $TMPDIR on infom07-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Nov 25 07:21:10 -12 2024 I: pbuilder-time-stamp: 1732562470 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [btllib_1.4.10+dfsg-1.dsc] I: copying [./btllib_1.4.10+dfsg.orig.tar.xz] I: copying [./btllib_1.4.10+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Feb 2 08:24:43 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./btllib_1.4.10+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting btllib in btllib-1.4.10+dfsg dpkg-source: info: unpacking btllib_1.4.10+dfsg.orig.tar.xz dpkg-source: info: unpacking btllib_1.4.10+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying find_object_files_at_right_loc.patch dpkg-source: info: applying use_debian_packaged_libs.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/20111/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='dcb927d197fb40f596a6527499dbe37f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='20111' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RzFn8q3O/pbuilderrc_UNkB --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RzFn8q3O/b1 --logfile b1/build.log btllib_1.4.10+dfsg-1.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom07-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/20111/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-exec, meson, ninja-build, libcpptoml-dev, libomp-dev, samtools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19951 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-exec; however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on meson; however: Package meson is not installed. pbuilder-satisfydepends-dummy depends on ninja-build; however: Package ninja-build is not installed. pbuilder-satisfydepends-dummy depends on libcpptoml-dev; however: Package libcpptoml-dev is not installed. pbuilder-satisfydepends-dummy depends on libomp-dev; however: Package libomp-dev is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcpptoml-dev{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libomp-16-dev{a} libomp-dev{a} libomp5-16t64{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} meson{a} netbase{a} ninja-build{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} samtools{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 87 newly installed, 0 to remove and 0 not upgraded. Need to get 35.3 MB of archives. After unpacking 136 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 libpython3.12-minimal i386 3.12.7-3 [814 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.6.4-1 [107 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 python3.12-minimal i386 3.12.7-3 [2236 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 python3-minimal i386 3.12.7-1 [26.8 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 libcom-err2 i386 1.47.1-1+b1 [23.4 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Get: 12 http://deb.debian.org/debian unstable/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 libtirpc3t64 i386 1.3.4+ds-1.3+b1 [90.5 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 libnsl2 i386 1.3.0-3+b3 [42.7 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 libreadline8t64 i386 8.2-5 [173 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 libpython3.12-stdlib i386 3.12.7-3 [1964 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 python3.12 i386 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 libpython3-stdlib i386 3.12.7-1 [9712 B] Get: 22 http://deb.debian.org/debian unstable/main i386 python3 i386 3.12.7-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.2-11 [95.6 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-4 [293 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 autopoint all 0.22.5-2 [723 kB] Get: 38 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 39 http://deb.debian.org/debian unstable/main i386 libtool all 2.4.7-8 [517 kB] Get: 40 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 43 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 44 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 45 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 46 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-5+b1 [9583 kB] Get: 47 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 48 http://deb.debian.org/debian unstable/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 49 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian unstable/main i386 debhelper all 13.20 [915 kB] Get: 52 http://deb.debian.org/debian unstable/main i386 dh-exec i386 0.30 [26.2 kB] Get: 53 http://deb.debian.org/debian unstable/main i386 libbrotli1 i386 1.1.0-2+b6 [308 kB] Get: 54 http://deb.debian.org/debian unstable/main i386 libcpptoml-dev all 0.1.1-3 [180 kB] Get: 55 http://deb.debian.org/debian unstable/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8 [20.6 kB] Get: 56 http://deb.debian.org/debian unstable/main i386 libsasl2-2 i386 2.1.28+dfsg1-8 [61.0 kB] Get: 57 http://deb.debian.org/debian unstable/main i386 libldap-2.5-0 i386 2.5.18+dfsg-3+b1 [200 kB] Get: 58 http://deb.debian.org/debian unstable/main i386 libnghttp2-14 i386 1.64.0-1 [82.4 kB] Get: 59 http://deb.debian.org/debian unstable/main i386 libnghttp3-9 i386 1.4.0-1+b1 [74.9 kB] Get: 60 http://deb.debian.org/debian unstable/main i386 libngtcp2-16 i386 1.6.0-1 [154 kB] Get: 61 http://deb.debian.org/debian unstable/main i386 libngtcp2-crypto-gnutls8 i386 1.6.0-1 [20.2 kB] Get: 62 http://deb.debian.org/debian unstable/main i386 libpsl5t64 i386 0.21.2-1.1+b1 [57.7 kB] Get: 63 http://deb.debian.org/debian unstable/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b5 [62.4 kB] Get: 64 http://deb.debian.org/debian unstable/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB] Get: 65 http://deb.debian.org/debian unstable/main i386 libcurl3t64-gnutls i386 8.11.0-1 [403 kB] Get: 66 http://deb.debian.org/debian unstable/main i386 libdeflate0 i386 1.22-1 [48.1 kB] Get: 67 http://deb.debian.org/debian unstable/main i386 libhtscodecs2 i386 1.6.1-1 [70.8 kB] Get: 68 http://deb.debian.org/debian unstable/main i386 libhts3t64 i386 1.20+ds-2 [500 kB] Get: 69 http://deb.debian.org/debian unstable/main i386 libncurses6 i386 6.5-2+b1 [112 kB] Get: 70 http://deb.debian.org/debian unstable/main i386 libomp5-16t64 i386 1:16.0.6-27+b1 [418 kB] Get: 71 http://deb.debian.org/debian unstable/main i386 libpython3.12t64 i386 3.12.7-3 [2170 kB] Get: 72 http://deb.debian.org/debian unstable/main i386 libomp-16-dev i386 1:16.0.6-27+b1 [122 kB] Get: 73 http://deb.debian.org/debian unstable/main i386 libomp-dev i386 1:16.0-58.1 [4960 B] Get: 74 http://deb.debian.org/debian unstable/main i386 ninja-build i386 1.12.1-1 [153 kB] Get: 75 http://deb.debian.org/debian unstable/main i386 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 76 http://deb.debian.org/debian unstable/main i386 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 77 http://deb.debian.org/debian unstable/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 78 http://deb.debian.org/debian unstable/main i386 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 79 http://deb.debian.org/debian unstable/main i386 python3-inflect all 7.3.1-2 [32.4 kB] Get: 80 http://deb.debian.org/debian unstable/main i386 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 81 http://deb.debian.org/debian unstable/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 82 http://deb.debian.org/debian unstable/main i386 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 83 http://deb.debian.org/debian unstable/main i386 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 84 http://deb.debian.org/debian unstable/main i386 python3-zipp all 3.21.0-1 [10.6 kB] Get: 85 http://deb.debian.org/debian unstable/main i386 python3-setuptools all 75.2.0-1 [731 kB] Get: 86 http://deb.debian.org/debian unstable/main i386 meson all 1.6.0-1 [628 kB] Get: 87 http://deb.debian.org/debian unstable/main i386 samtools i386 1.20-3 [688 kB] Fetched 35.3 MB in 0s (73.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19951 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_i386.deb ... Unpacking libpython3.12-minimal:i386 (3.12.7-3) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.6.4-1_i386.deb ... Unpacking libexpat1:i386 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_i386.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:i386 (3.12.7-3) ... Setting up libexpat1:i386 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20271 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_i386.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../04-libkrb5support0_1.21.3-3_i386.deb ... Unpacking libkrb5support0:i386 (1.21.3-3) ... Selecting previously unselected package libcom-err2:i386. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_i386.deb ... Unpacking libcom-err2:i386 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../06-libk5crypto3_1.21.3-3_i386.deb ... Unpacking libk5crypto3:i386 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../07-libkeyutils1_1.6.3-4_i386.deb ... Unpacking libkeyutils1:i386 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../08-libkrb5-3_1.21.3-3_i386.deb ... Unpacking libkrb5-3:i386 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:i386. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3 to /lib/i386-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3.0.0 to /lib/i386-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:i386 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:i386. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_i386.deb ... Unpacking libnsl2:i386 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:i386. Preparing to unpack .../14-libreadline8t64_8.2-5_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:i386. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_i386.deb ... Unpacking libpython3.12-stdlib:i386 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_i386.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../17-libpython3-stdlib_3.12.7-1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.12.7-1) ... Setting up python3-minimal (3.12.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21333 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.7-1_i386.deb ... Unpacking python3 (3.12.7-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3+b1_i386.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.22.5-2_i386.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-5_i386.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.40.2-11_i386.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../09-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../22-libelf1t64_0.192-4_i386.deb ... Unpacking libelf1t64:i386 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../24-libicu72_72.1-5+b1_i386.deb ... Unpacking libicu72:i386 (72.1-5+b1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_i386.deb ... Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.22.5-2_i386.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package dh-exec. Preparing to unpack .../30-dh-exec_0.30_i386.deb ... Unpacking dh-exec (0.30) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../31-libbrotli1_1.1.0-2+b6_i386.deb ... Unpacking libbrotli1:i386 (1.1.0-2+b6) ... Selecting previously unselected package libcpptoml-dev. Preparing to unpack .../32-libcpptoml-dev_0.1.1-3_all.deb ... Unpacking libcpptoml-dev (0.1.1-3) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../33-libsasl2-modules-db_2.1.28+dfsg1-8_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg1-8) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../34-libsasl2-2_2.1.28+dfsg1-8_i386.deb ... Unpacking libsasl2-2:i386 (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:i386. Preparing to unpack .../35-libldap-2.5-0_2.5.18+dfsg-3+b1_i386.deb ... Unpacking libldap-2.5-0:i386 (2.5.18+dfsg-3+b1) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../36-libnghttp2-14_1.64.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.64.0-1) ... Selecting previously unselected package libnghttp3-9:i386. Preparing to unpack .../37-libnghttp3-9_1.4.0-1+b1_i386.deb ... Unpacking libnghttp3-9:i386 (1.4.0-1+b1) ... Selecting previously unselected package libngtcp2-16:i386. Preparing to unpack .../38-libngtcp2-16_1.6.0-1_i386.deb ... Unpacking libngtcp2-16:i386 (1.6.0-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:i386. Preparing to unpack .../39-libngtcp2-crypto-gnutls8_1.6.0-1_i386.deb ... Unpacking libngtcp2-crypto-gnutls8:i386 (1.6.0-1) ... Selecting previously unselected package libpsl5t64:i386. Preparing to unpack .../40-libpsl5t64_0.21.2-1.1+b1_i386.deb ... Unpacking libpsl5t64:i386 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../41-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:i386. Preparing to unpack .../42-libssh2-1t64_1.11.1-1_i386.deb ... Unpacking libssh2-1t64:i386 (1.11.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:i386. Preparing to unpack .../43-libcurl3t64-gnutls_8.11.0-1_i386.deb ... Unpacking libcurl3t64-gnutls:i386 (8.11.0-1) ... Selecting previously unselected package libdeflate0:i386. Preparing to unpack .../44-libdeflate0_1.22-1_i386.deb ... Unpacking libdeflate0:i386 (1.22-1) ... Selecting previously unselected package libhtscodecs2:i386. Preparing to unpack .../45-libhtscodecs2_1.6.1-1_i386.deb ... Unpacking libhtscodecs2:i386 (1.6.1-1) ... Selecting previously unselected package libhts3t64:i386. Preparing to unpack .../46-libhts3t64_1.20+ds-2_i386.deb ... Unpacking libhts3t64:i386 (1.20+ds-2) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../47-libncurses6_6.5-2+b1_i386.deb ... Unpacking libncurses6:i386 (6.5-2+b1) ... Selecting previously unselected package libomp5-16t64:i386. Preparing to unpack .../48-libomp5-16t64_1%3a16.0.6-27+b1_i386.deb ... Unpacking libomp5-16t64:i386 (1:16.0.6-27+b1) ... Selecting previously unselected package libpython3.12t64:i386. Preparing to unpack .../49-libpython3.12t64_3.12.7-3_i386.deb ... Unpacking libpython3.12t64:i386 (3.12.7-3) ... Selecting previously unselected package libomp-16-dev. Preparing to unpack .../50-libomp-16-dev_1%3a16.0.6-27+b1_i386.deb ... Unpacking libomp-16-dev (1:16.0.6-27+b1) ... Selecting previously unselected package libomp-dev:i386. Preparing to unpack .../51-libomp-dev_1%3a16.0-58.1_i386.deb ... Unpacking libomp-dev:i386 (1:16.0-58.1) ... Selecting previously unselected package ninja-build. Preparing to unpack .../52-ninja-build_1.12.1-1_i386.deb ... Unpacking ninja-build (1.12.1-1) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../53-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../54-python3-more-itertools_10.5.0-1_all.deb ... Unpacking python3-more-itertools (10.5.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../55-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../56-python3-typeguard_4.4.1-1_all.deb ... Unpacking python3-typeguard (4.4.1-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../57-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../58-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../59-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../60-python3-pkg-resources_75.2.0-1_all.deb ... Unpacking python3-pkg-resources (75.2.0-1) ... Selecting previously unselected package python3-jaraco.text. Preparing to unpack .../61-python3-jaraco.text_4.0.0-1_all.deb ... Unpacking python3-jaraco.text (4.0.0-1) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../62-python3-zipp_3.21.0-1_all.deb ... Unpacking python3-zipp (3.21.0-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../63-python3-setuptools_75.2.0-1_all.deb ... Unpacking python3-setuptools (75.2.0-1) ... Selecting previously unselected package meson. Preparing to unpack .../64-meson_1.6.0-1_all.deb ... Unpacking meson (1.6.0-1) ... Selecting previously unselected package samtools. Preparing to unpack .../65-samtools_1.20-3_i386.deb ... Unpacking samtools (1.20-3) ... Setting up libhtscodecs2:i386 (1.6.1-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:i386 (1.5.8-1) ... Setting up libkeyutils1:i386 (1.6.3-4) ... Setting up libicu72:i386 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:i386 (1.1.0-2+b6) ... Setting up libmagic1t64:i386 (1:5.45-3+b1) ... Setting up libpsl5t64:i386 (0.21.2-1.1+b1) ... Setting up libnghttp2-14:i386 (1.64.0-1) ... Setting up libdeflate0:i386 (1.22-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:i386 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up ninja-build (1.12.1-1) ... Setting up libelf1t64:i386 (0.192-4) ... Setting up libkrb5support0:i386 (1.21.3-3) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Nov 25 19:21:28 UTC 2024. Universal Time is now: Mon Nov 25 19:21:28 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libomp5-16t64:i386 (1:16.0.6-27+b1) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libcpptoml-dev (0.1.1-3) ... Setting up libncurses6:i386 (6.5-2+b1) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:i386 (1.21.3-3) ... Setting up libsasl2-2:i386 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:i386 (1.4.0-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b2) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:i386 (1.6.0-1) ... Setting up libkrb5-3:i386 (1.21.3-3) ... Setting up libssh2-1t64:i386 (1.11.1-1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libngtcp2-crypto-gnutls8:i386 (1.6.0-1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up libldap-2.5-0:i386 (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:i386 (1.21.3-3) ... Setting up libreadline8t64:i386 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libtirpc3t64:i386 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3t64-gnutls:i386 (8.11.0-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:i386 (1.3.0-3+b3) ... Setting up libhts3t64:i386 (1.20+ds-2) ... Setting up libpython3.12-stdlib:i386 (3.12.7-3) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up dh-exec (0.30) ... Setting up samtools (1.20-3) ... Setting up libpython3.12t64:i386 (3.12.7-3) ... Setting up libpython3-stdlib:i386 (3.12.7-1) ... Setting up libomp-16-dev (1:16.0.6-27+b1) ... Setting up python3 (3.12.7-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up libomp-dev:i386 (1:16.0-58.1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up meson (1.6.0-1) ... Processing triggers for libc-bin (2.40-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/btllib-1.4.10+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../btllib_1.4.10+dfsg-1_source.changes dpkg-buildpackage: info: source package btllib dpkg-buildpackage: info: source version 1.4.10+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-i686-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 meson setup .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/i386-linux-gnu -Dpython.bytecompile=-1 The Meson build system Version: 1.6.0 Source dir: /build/reproducible-path/btllib-1.4.10+dfsg Build dir: /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu Build type: native build Project name: btllib Project version: 1.4.9 C++ compiler for the host machine: c++ (gcc 14.2.0 "c++ (Debian 14.2.0-8) 14.2.0") C++ linker for the host machine: c++ ld.bfd 2.43.1 Host machine cpu family: x86 Host machine cpu: i686 Configuring config.hpp using configuration Run-time dependency threads found: YES Run-time dependency OpenMP found: YES 4.5 Program samtools found: YES (/usr/bin/samtools) Program gzip found: YES (/usr/bin/gzip) Program xz found: YES (/usr/bin/xz) Program bzip2 found: YES (/usr/bin/bzip2) Program tar found: YES (/usr/bin/tar) Program swig found: NO Program doxygen found: NO WARNING: You should add the boolean check kwarg to the run_command call. It currently defaults to false, but it will default to true in meson 2.0. See also: https://github.com/mesonbuild/meson/issues/9300 Program python3 found: YES (/usr/bin/python3) Program python3-config found: NO Message: python3-config not found, skipping Python wrappers. Build targets in project: 23 btllib 1.4.9 User defined options buildtype : plain libdir : lib/i386-linux-gnu localstatedir : /var prefix : /usr python.bytecompile: -1 sysconfdir : /etc wrap_mode : nodownload Found ninja-1.12.1 at /usr/bin/ninja dh_auto_build cd obj-i686-linux-gnu && LC_ALL=C.UTF-8 ninja -j6 -v [1/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_multiline_fastq_module.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_multiline_fastq_module.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_multiline_fastq_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/seq_reader_multiline_fastq_module.cpp [2/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_cstring.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_cstring.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_cstring.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/cstring.cpp [3/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/seq.cpp [4/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_fastq_module.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_fastq_module.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_fastq_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/seq_reader_fastq_module.cpp [5/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_sam_module.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_sam_module.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_sam_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/seq_reader_sam_module.cpp [6/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_status.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_status.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_status.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/status.cpp [7/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_multiline_fasta_module.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_multiline_fasta_module.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_multiline_fasta_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/seq_reader_multiline_fasta_module.cpp [8/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_writer.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_writer.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_writer.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/seq_writer.cpp [9/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_data_stream.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_data_stream.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_data_stream.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/data_stream.cpp [10/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_util.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_util.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_util.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/util.cpp [11/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/nthash.cpp [12/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_fasta_module.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_fasta_module.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_fasta_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/seq_reader_fasta_module.cpp [13/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash_consts.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash_consts.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash_consts.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/nthash_consts.cpp [14/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash_lowlevel.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash_lowlevel.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash_lowlevel.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/nthash_lowlevel.cpp [15/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_gfa2_module.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_gfa2_module.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_gfa2_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/seq_reader_gfa2_module.cpp [16/51] c++ -Itests/cstring_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/cstring_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_cstring.cpp.o -MF tests/cstring_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_cstring.cpp.o.d -o tests/cstring_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_cstring.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/cstring.cpp [17/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_process_pipeline.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_process_pipeline.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_process_pipeline.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/process_pipeline.cpp [18/51] c++ -Itests/seq_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/seq_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq.cpp.o -MF tests/seq_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq.cpp.o.d -o tests/seq_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/seq.cpp [19/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/seq_reader.cpp [20/51] c++ -Itests/data_stream_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/data_stream_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_data_stream.cpp.o -MF tests/data_stream_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_data_stream.cpp.o.d -o tests/data_stream_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_data_stream.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/data_stream.cpp [21/51] c++ -Itests/seq_reader_sam_module_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/seq_reader_sam_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_sam_module.cpp.o -MF tests/seq_reader_sam_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_sam_module.cpp.o.d -o tests/seq_reader_sam_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_sam_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/seq_reader_sam_module.cpp [22/51] c++ -Itests/seq_reader_multiline_fastq_module_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/seq_reader_multiline_fastq_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_multiline_fastq_module.cpp.o -MF tests/seq_reader_multiline_fastq_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_multiline_fastq_module.cpp.o.d -o tests/seq_reader_multiline_fastq_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_multiline_fastq_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/seq_reader_multiline_fastq_module.cpp [23/51] c++ -Itests/nthash_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/nthash_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_nthash.cpp.o -MF tests/nthash_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_nthash.cpp.o.d -o tests/nthash_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_nthash.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/nthash.cpp [24/51] c++ -Itests/seq_reader_multiline_fasta_module_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/seq_reader_multiline_fasta_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_multiline_fasta_module.cpp.o -MF tests/seq_reader_multiline_fasta_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_multiline_fasta_module.cpp.o.d -o tests/seq_reader_multiline_fasta_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_multiline_fasta_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/seq_reader_multiline_fasta_module.cpp [25/51] c++ -Irecipes/indexlr.p -Irecipes -I../recipes -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ recipes/indexlr.p/_build_reproducible-path_btllib-1.4.10+dfsg_recipes_indexlr.cpp.o -MF recipes/indexlr.p/_build_reproducible-path_btllib-1.4.10+dfsg_recipes_indexlr.cpp.o.d -o recipes/indexlr.p/_build_reproducible-path_btllib-1.4.10+dfsg_recipes_indexlr.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/recipes/indexlr.cpp [26/51] c++ -Itests/seq_reader_fastq_module_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/seq_reader_fastq_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_fastq_module.cpp.o -MF tests/seq_reader_fastq_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_fastq_module.cpp.o.d -o tests/seq_reader_fastq_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_fastq_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/seq_reader_fastq_module.cpp [27/51] c++ -Itests/util_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/util_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_util.cpp.o -MF tests/util_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_util.cpp.o.d -o tests/util_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_util.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/util.cpp [28/51] c++ -Ilibbtllib.a.p -I. -I.. -Iinclude -I../include -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fopenmp -pthread -MD -MQ libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_bloom_filter.cpp.o -MF libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_bloom_filter.cpp.o.d -o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_bloom_filter.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/src/btllib/bloom_filter.cpp [29/51] rm -f libbtllib.a && gcc-ar csrD libbtllib.a libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_cstring.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_multiline_fastq_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_status.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_data_stream.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_process_pipeline.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_sam_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_fastq_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_multiline_fasta_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_writer.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_bloom_filter.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_util.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash_lowlevel.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_fasta_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_seq_reader_gfa2_module.cpp.o libbtllib.a.p/_build_reproducible-path_btllib-1.4.10+dfsg_src_btllib_nthash_consts.cpp.o [30/51] c++ -Itests/seq_writer_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/seq_writer_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_writer.cpp.o -MF tests/seq_writer_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_writer.cpp.o.d -o tests/seq_writer_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_writer.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/seq_writer.cpp [31/51] c++ -o recipes/indexlr recipes/indexlr.p/_build_reproducible-path_btllib-1.4.10+dfsg_recipes_indexlr.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [32/51] c++ -o tests/cstring_test tests/cstring_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_cstring.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [33/51] c++ -o tests/seq_test tests/seq_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [34/51] c++ -o tests/seq_reader_multiline_fastq_module_test tests/seq_reader_multiline_fastq_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_multiline_fastq_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [35/51] c++ -o tests/nthash_test tests/nthash_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_nthash.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [36/51] c++ -Itests/seq_reader_gfa2_module_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/seq_reader_gfa2_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_gfa2_module.cpp.o -MF tests/seq_reader_gfa2_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_gfa2_module.cpp.o.d -o tests/seq_reader_gfa2_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_gfa2_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/seq_reader_gfa2_module.cpp [37/51] c++ -Itests/seq_reader_fasta_module_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/seq_reader_fasta_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_fasta_module.cpp.o -MF tests/seq_reader_fasta_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_fasta_module.cpp.o.d -o tests/seq_reader_fasta_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_fasta_module.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/seq_reader_fasta_module.cpp [38/51] c++ -o tests/data_stream_test tests/data_stream_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_data_stream.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [39/51] c++ -o tests/seq_reader_sam_module_test tests/seq_reader_sam_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_sam_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [40/51] c++ -o tests/seq_reader_fastq_module_test tests/seq_reader_fastq_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_fastq_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [41/51] c++ -o tests/seq_reader_multiline_fasta_module_test tests/seq_reader_multiline_fasta_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_multiline_fasta_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [42/51] c++ -o tests/seq_writer_test tests/seq_writer_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_writer.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [43/51] c++ -o tests/util_test tests/util_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_util.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [44/51] c++ -o tests/seq_reader_fasta_module_test tests/seq_reader_fasta_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_fasta_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [45/51] c++ -o tests/seq_reader_gfa2_module_test tests/seq_reader_gfa2_module_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_seq_reader_gfa2_module.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [46/51] c++ -Itests/bloom_filter_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/bloom_filter_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_bloom_filter.cpp.o -MF tests/bloom_filter_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_bloom_filter.cpp.o.d -o tests/bloom_filter_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_bloom_filter.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/bloom_filter.cpp [47/51] c++ -o tests/bloom_filter_test tests/bloom_filter_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_bloom_filter.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [48/51] c++ -Itests/counting_bloom_filter_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/counting_bloom_filter_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_counting_bloom_filter.cpp.o -MF tests/counting_bloom_filter_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_counting_bloom_filter.cpp.o.d -o tests/counting_bloom_filter_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_counting_bloom_filter.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/counting_bloom_filter.cpp [49/51] c++ -o tests/counting_bloom_filter_test tests/counting_bloom_filter_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_counting_bloom_filter.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp [50/51] c++ -Itests/indexlr_test.p -Itests -I../tests -Iinclude -I../include -I. -I.. -fdiagnostics-color=always -D_GLIBCXX_ASSERTIONS=1 -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++11 -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -pthread -MD -MQ tests/indexlr_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_indexlr.cpp.o -MF tests/indexlr_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_indexlr.cpp.o.d -o tests/indexlr_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_indexlr.cpp.o -c /build/reproducible-path/btllib-1.4.10+dfsg/tests/indexlr.cpp [51/51] c++ -o tests/indexlr_test tests/indexlr_test.p/_build_reproducible-path_btllib-1.4.10+dfsg_tests_indexlr.cpp.o -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -ldl -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 libbtllib.a -Wl,--end-group -pthread -fopenmp -fopenmp debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/btllib-1.4.10+dfsg' cp -a tests/ obj-*/ dh_auto_test cd obj-i686-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 MESON_TESTTHREADS=6 meson test ninja: Entering directory `/build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu' ninja: no work to do. 1/15 cstring OK 0.02s 2/15 seq OK 0.02s 3/15 nthash OK 0.02s 4/15 data_stream OK 0.05s 5/15 bloom_filter OK 0.09s 6/15 util OK 0.01s 7/15 seq_writer TIMEOUT 30.10s killed by signal 15 SIGTERM >>> MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=25 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/seq_writer_test 8/15 seq_reader_multiline_fastq_module TIMEOUT 30.12s killed by signal 15 SIGTERM >>> MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=7 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/seq_reader_multiline_fastq_module_test 9/15 seq_reader_sam_module TIMEOUT 30.15s killed by signal 15 SIGTERM >>> MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=137 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/seq_reader_sam_module_test 10/15 seq_reader_fastq_module TIMEOUT 30.16s killed by signal 15 SIGTERM >>> MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=19 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/seq_reader_fastq_module_test 11/15 seq_reader_multiline_fasta_module TIMEOUT 30.16s killed by signal 15 SIGTERM >>> MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=168 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/seq_reader_multiline_fasta_module_test 12/15 seq_reader_gfa2_module OK 0.04s 13/15 seq_reader_fasta_module TIMEOUT 30.02s killed by signal 15 SIGTERM >>> MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=43 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/seq_reader_fasta_module_test 14/15 counting_bloom_filter OK 0.13s 15/15 indexlr TIMEOUT 30.13s killed by signal 15 SIGTERM >>> MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=142 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/indexlr_test Ok: 8 Expected Fail: 0 Fail: 0 Unexpected Pass: 0 Skipped: 0 Timeout: 7 Full log written to /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/meson-logs/testlog.txt cd obj-i686-linux-gnu && tail -v -n \+0 meson-logs/testlog.txt ==> meson-logs/testlog.txt <== Log of Meson test suite run on 2024-11-25T07:21:52.703008 Inherited environment: DEB_HOST_MULTIARCH=i386-linux-gnu LC_ALL=C.UTF-8 DEB_HOST_GNU_SYSTEM=linux-gnu DEB_BUILD_GNU_TYPE=i686-linux-gnu DEB_TARGET_ARCH_LIBC=gnu FFLAGS='-g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong' SUDO_UID=104 DEB_BUILD_ARCH_ENDIAN=little DEB_BUILD_GNU_SYSTEM=linux-gnu CFLAGS_FOR_BUILD='-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security' OBJCXXFLAGS_FOR_BUILD='-g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security' DEB_BUILD_ARCH_BITS=32 DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DEB_HOST_ARCH=i386 LDFLAGS_FOR_BUILD='-Wl,-z,relro -Wl,-z,now' DEB_TARGET_ARCH_ENDIAN=little PWD=/build/reproducible-path/btllib-1.4.10+dfsg SOURCE_DATE_EPOCH=1675321847 MAIL=/var/mail/root OBJCFLAGS_FOR_BUILD='-g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security' OBJCXXFLAGS='-g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security' OLDPWD=/ PBUILDER_PKGDATADIR=/usr/share/pbuilder DEB_HOST_ARCH_BITS=32 LANG=C MAKEFLAGS=w DEB_TARGET_ARCH=i386 DH_INTERNAL_OPTIONS='' DEB_HOST_GNU_CPU=i686 DEB_BUILD_ARCH_LIBC=gnu BUILDUSERNAME=pbuilder1 MFLAGS=-w DEB_TARGET_ARCH_BITS=32 CXXFLAGS_FOR_BUILD='-g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security' ASFLAGS='' DEB_BUILD_ARCH_CPU=i386 LD_PRELOAD='' DEB_HOST_ARCH_OS=linux SHELL=/bin/bash LD_LIBRARY_PATH=/usr/lib/libeatmydata SHLVL=2 DEB_HOST_ARCH_CPU=i386 FCFLAGS='-g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong' PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PBCURRENTCOMMANDLINEOPERATION=build DEB_BUILD_ARCH_ABI=base LANGUAGE=en_US:en PBUILDER_SYSCONFDIR=/etc CPPFLAGS_FOR_BUILD='-Wdate-time -D_FORTIFY_SOURCE=2' DEB_BUILD_ARCH=i386 FFLAGS_FOR_BUILD='-g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong' DEB_HOST_ARCH_LIBC=gnu TZ=/usr/share/zoneinfo/Etc/GMT+12 INVOCATION_ID=63da272d54264fe6882fd3ea288c8999 SUDO_GID=111 SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RzFn8q3O/pbuilderrc_UNkB --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RzFn8q3O/b1 --logfile b1/build.log btllib_1.4.10+dfsg-1.dsc' DEB_TARGET_ARCH_CPU=i386 DEB_HOST_GNU_TYPE=i686-linux-gnu DEB_BUILD_ARCH_OS=linux FCFLAGS_FOR_BUILD='-g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong' DFLAGS_FOR_BUILD=-frelease LOGNAME=pbuilder1 CPPFLAGS='-Wdate-time -D_FORTIFY_SOURCE=2' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' DEB_TARGET_MULTIARCH=i386-linux-gnu DEB_BUILD_GNU_CPU=i686 DEB_TARGET_ARCH_OS=linux USER=pbuilder1 DEB_HOST_ARCH_ABI=base DEB_BUILD_MULTIARCH=i386-linux-gnu LDFLAGS='-Wl,-z,relro -Wl,-z,now' DEB_TARGET_GNU_TYPE=i686-linux-gnu DEB_TARGET_ARCH_ABI=base _=/usr/bin/unshare CFLAGS='-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security' SUDO_USER=jenkins DFLAGS=-frelease PBUILDER_PKGLIBDIR=/usr/lib/pbuilder DEB_TARGET_GNU_CPU=i686 ASFLAGS_FOR_BUILD='' DEBIAN_FRONTEND=noninteractive HOME=/build/reproducible-path/btllib-1.4.10+dfsg/debian/.debhelper/generated/_source/home DEB_RULES_REQUIRES_ROOT=no DEB_TARGET_GNU_SYSTEM=linux-gnu DEB_HOST_ARCH_ENDIAN=little TERM=unknown OBJCFLAGS='-g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security' DEB_BUILD_MAINT_OPTIONS=hardening=+all DH_INTERNAL_BUILDFLAGS=1 CXXFLAGS='-g -O2 -ffile-prefix-map=/build/reproducible-path/btllib-1.4.10+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security' DH_INTERNAL_OVERRIDE=dh_auto_test PBUILDER_OPERATION=build MAKELEVEL=2 XDG_RUNTIME_DIR=/tmp/dh-xdg-rundir-hrysRWHo MESON_TESTTHREADS=6 DEB_PYTHON_INSTALL_LAYOUT=deb ==================================== 1/15 ==================================== test: cstring start time: 19:21:52 duration: 0.02s result: exit status 0 command: MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=244 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/cstring_test ============================================================================== ==================================== 2/15 ==================================== test: seq start time: 19:21:52 duration: 0.02s result: exit status 0 command: MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=222 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/seq_test ============================================================================== ==================================== 3/15 ==================================== test: nthash start time: 19:21:52 duration: 0.02s result: exit status 0 command: MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=242 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/nthash_test ----------------------------------- stderr ----------------------------------- ./tests/nthash.cpp: Testing k-mer hash values ./tests/nthash.cpp: Testing k-mer rolling ./tests/nthash.cpp: Testing k-mer rolling vs ntbase hash values ./tests/nthash.cpp: Testing canonical hashing ./tests/nthash.cpp: Testing k-mer back rolling ./tests/nthash.cpp: Testing k-mer peeking ./tests/nthash.cpp: Testing skipping Ns ./tests/nthash.cpp: Testing base substitution Testing RNA ./tests/nthash.cpp: Testing block parsing ./tests/nthash.cpp: Testing spaced seed hash values ./tests/nthash.cpp: Testing spaced seeds ./tests/nthash.cpp: Testing spaced seed back roll Testing rolling spaced seeds vs masked hashing Testing reset function ./tests/nthash.cpp: Testing canonical hashing in spaced seeds ============================================================================== ==================================== 4/15 ==================================== test: data_stream start time: 19:21:52 duration: 0.05s result: exit status 0 command: MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=8 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/data_stream_test ----------------------------------- stderr ----------------------------------- Test .gz write Test .gz read Test .xz write Test .xz read ============================================================================== ==================================== 5/15 ==================================== test: bloom_filter start time: 19:21:52 duration: 0.09s result: exit status 0 command: MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=55 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/bloom_filter_test ----------------------------------- stderr ----------------------------------- Testing BloomFilter Testing KmerBloomFilter Testing SeedBloomFilter Testing KmerBloomFilter with multiple threads False positives = 0 ============================================================================== ==================================== 6/15 ==================================== test: util start time: 19:21:52 duration: 0.01s result: exit status 0 command: MALLOC_PERTURB_=230 MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/util_test ============================================================================== ==================================== 7/15 ==================================== test: seq_writer start time: 19:21:52 duration: 30.10s result: killed by signal 15 SIGTERM command: MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=25 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/seq_writer_test ----------------------------------- stderr ----------------------------------- Iteration 1 Test FASTA ============================================================================== ==================================== 8/15 ==================================== test: seq_reader_multiline_fastq_module start time: 19:21:52 duration: 30.12s result: killed by signal 15 SIGTERM command: MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=7 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/seq_reader_multiline_fastq_module_test ----------------------------------- stderr ----------------------------------- Iteration 1 Test multiline FASTQ ============================================================================== ==================================== 9/15 ==================================== test: seq_reader_sam_module start time: 19:21:52 duration: 30.15s result: killed by signal 15 SIGTERM command: MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=137 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/seq_reader_sam_module_test ----------------------------------- stderr ----------------------------------- Iteration 1 Test small SAM [2024-11-25 07:21:52][INFO]  samtools 1.20 Using htslib 1.20 [M::bam2fq_mainloop] discarded 0 singletons [M::bam2fq_mainloop] processed 2 reads ============================================================================== =================================== 10/15 ==================================== test: seq_reader_fastq_module start time: 19:21:52 duration: 30.16s result: killed by signal 15 SIGTERM command: MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=19 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/seq_reader_fastq_module_test ----------------------------------- stderr ----------------------------------- Iteration 1 Test small FASTA and FASTQ simultaneously ============================================================================== =================================== 11/15 ==================================== test: seq_reader_multiline_fasta_module start time: 19:21:52 duration: 30.16s result: killed by signal 15 SIGTERM command: MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=168 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/seq_reader_multiline_fasta_module_test ----------------------------------- stderr ----------------------------------- Iteration 1 Test multiline FASTA ============================================================================== =================================== 12/15 ==================================== test: seq_reader_gfa2_module start time: 19:22:22 duration: 0.04s result: exit status 0 command: MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 MALLOC_PERTURB_=19 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/seq_reader_gfa2_module_test ============================================================================== =================================== 13/15 ==================================== test: seq_reader_fasta_module start time: 19:21:52 duration: 30.02s result: killed by signal 15 SIGTERM command: MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=43 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/seq_reader_fasta_module_test ----------------------------------- stderr ----------------------------------- Iteration 1 Test small FASTA ============================================================================== =================================== 14/15 ==================================== test: counting_bloom_filter start time: 19:22:22 duration: 0.13s result: exit status 0 command: MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=163 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/counting_bloom_filter_test ----------------------------------- stderr ----------------------------------- Testing CountingBloomFilter Testing KmerCountingBloomFilter Testing KmerCountingBloomfilter with multiple threads False positives = 0 Seqs with more than 1 presence = 89 ============================================================================== =================================== 15/15 ==================================== test: indexlr start time: 19:22:22 duration: 30.13s result: killed by signal 15 SIGTERM command: MSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 MALLOC_PERTURB_=142 MESON_TEST_ITERATION=1 UBSAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1:print_stacktrace=1 /build/reproducible-path/btllib-1.4.10+dfsg/obj-i686-linux-gnu/tests/indexlr_test ----------------------------------- stderr ----------------------------------- Testing on empty file [2024-11-25 07:22:22][WARNING] ./tests/empty.fa is empty. ============================================================================== Summary of Failures: 7/15 seq_writer TIMEOUT 30.10s killed by signal 15 SIGTERM 8/15 seq_reader_multiline_fastq_module TIMEOUT 30.12s killed by signal 15 SIGTERM 9/15 seq_reader_sam_module TIMEOUT 30.15s killed by signal 15 SIGTERM 10/15 seq_reader_fastq_module TIMEOUT 30.16s killed by signal 15 SIGTERM 11/15 seq_reader_multiline_fasta_module TIMEOUT 30.16s killed by signal 15 SIGTERM 13/15 seq_reader_fasta_module TIMEOUT 30.02s killed by signal 15 SIGTERM 15/15 indexlr TIMEOUT 30.13s killed by signal 15 SIGTERM Ok: 8 Expected Fail: 0 Fail: 0 Unexpected Pass: 0 Skipped: 0 Timeout: 7 dh_auto_test: error: cd obj-i686-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 MESON_TESTTHREADS=6 meson test returned exit code 7 make[1]: *** [debian/rules:12: override_dh_auto_test] Error 25 make[1]: Leaving directory '/build/reproducible-path/btllib-1.4.10+dfsg' make: *** [debian/rules:8: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/20111 and its subdirectories btllib failed to build from source. removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/btllib_1.4.10+dfsg-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/btllib_1.4.10+dfsg-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/btllib_1.4.10+dfsg-1.build1.log.gz' Mon Nov 25 19:22:56 UTC 2024 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 86.6% -- replaced with stdout INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-25 19:22:57] INFO: Starting at 2024-11-25 19:22:57.231826 [2024-11-25 19:22:57] INFO: Generating the pages of 1 package(s) [2024-11-25 19:22:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/btllib_1.4.10+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/btllib_1.4.10+dfsg-1.diff.gz is missing [2024-11-25 19:22:57] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/i386/btllib didn't produce a buildlog, even though it has been built. [2024-11-25 19:22:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/btllib_1.4.10+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/btllib_1.4.10+dfsg-1.diff.gz is missing [2024-11-25 19:22:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/btllib_1.4.10+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/btllib_1.4.10+dfsg-1.diff.gz is missing [2024-11-25 19:22:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/btllib_1.4.10+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/btllib_1.4.10+dfsg-1.diff.gz is missing [2024-11-25 19:22:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/btllib_1.4.10+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/btllib_1.4.10+dfsg-1.diff.gz is missing [2024-11-25 19:22:57] INFO: Finished at 2024-11-25 19:22:57.508865, took: 0:00:00.277043 Mon Nov 25 19:22:57 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/i386/btllib.html Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/btllib_1.4.10+dfsg-1.rbuild.log: 85.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/btllib_1.4.10+dfsg-1.rbuild.log.gz [2024-11-25 19:22:57] INFO: Starting at 2024-11-25 19:22:57.852801 [2024-11-25 19:22:57] INFO: Generating the pages of 1 package(s) [2024-11-25 19:22:58] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/btllib_1.4.10+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/btllib_1.4.10+dfsg-1.diff.gz is missing [2024-11-25 19:22:58] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/btllib_1.4.10+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/btllib_1.4.10+dfsg-1.diff.gz is missing [2024-11-25 19:22:58] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/btllib_1.4.10+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/btllib_1.4.10+dfsg-1.diff.gz is missing [2024-11-25 19:22:58] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/btllib_1.4.10+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/btllib_1.4.10+dfsg-1.diff.gz is missing [2024-11-25 19:22:58] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/btllib_1.4.10+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/btllib_1.4.10+dfsg-1.diff.gz is missing [2024-11-25 19:22:58] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/btllib_1.4.10+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/btllib_1.4.10+dfsg-1.diff.gz is missing [2024-11-25 19:22:58] INFO: Finished at 2024-11-25 19:22:58.121260, took: 0:00:00.268462 All cleanup done. Mon Nov 25 19:22:58 UTC 2024 - total duration: 0h 1m 55s. Mon Nov 25 19:22:58 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-3kZn3PBH, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1min 56.577s CPU time consumed: 4.535s