Running as unit: rb-build-i386_16-48822.service ==================================================================================== Fri Nov 22 07:29:08 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_i386_16) on jenkins, called using "infom08-i386 infom07-i386" as arguments. Fri Nov 22 07:29:08 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-bgedyQcG" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Nov 22 07:29:08 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom08-i386.debian.net is marked as down. Fri Nov 22 07:29:08 UTC 2024 - checking via ssh if infom08-i386.debian.net is up. removed '/tmp/read-only-fs-test-EjgWiH' Fri Nov 22 07:29:09 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom07-i386.debian.net is marked as down. Fri Nov 22 07:29:09 UTC 2024 - checking via ssh if infom07-i386.debian.net is up. removed '/tmp/read-only-fs-test-wzHusY' ok, let's check if r-bioc-gsva is building anywhere yet… ok, r-bioc-gsva is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of r-bioc-gsva in unstable on i386 on jenkins now. 1st build will be done on infom08-i386.debian.net. 2nd build will be done on infom07-i386.debian.net. ============================================================================= Fri Nov 22 07:29:29 UTC 2024 I: starting to build r-bioc-gsva/unstable/i386 on jenkins on '2024-11-22 07:29' Fri Nov 22 07:29:29 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_16/48822/console.log 1732260569 i386 unstable r-bioc-gsva Fri Nov 22 07:29:29 UTC 2024 I: Downloading source for unstable/r-bioc-gsva=1.52.3+ds-1 --2024-11-22 07:29:29-- http://deb.debian.org/debian/pool/main/r/r-bioc-gsva/r-bioc-gsva_1.52.3%2bds-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2518 (2.5K) [text/prs.lines.tag] Saving to: ‘r-bioc-gsva_1.52.3+ds-1.dsc’ 0K .. 100% 305M=0s 2024-11-22 07:29:29 (305 MB/s) - ‘r-bioc-gsva_1.52.3+ds-1.dsc’ saved [2518/2518] --2024-11-22 07:29:29-- http://deb.debian.org/debian/pool/main/r/r-bioc-gsva/r-bioc-gsva_1.52.3%2bds-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2518 (2.5K) [text/prs.lines.tag] Saving to: ‘r-bioc-gsva_1.52.3+ds-1.dsc’ 0K .. 100% 305M=0s 2024-11-22 07:29:29 (305 MB/s) - ‘r-bioc-gsva_1.52.3+ds-1.dsc’ saved [2518/2518] Fri Nov 22 07:29:29 UTC 2024 I: r-bioc-gsva_1.52.3+ds-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-gsva Binary: r-bioc-gsva Architecture: any Version: 1.52.3+ds-1 Maintainer: Debian R Packages Maintainers Uploaders: Steffen Moeller Homepage: https://bioconductor.org/packages/GSVA/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-gsva Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-gsva.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, dh-r, r-base-dev, r-bioc-s4vectors (>= 0.42.1), r-bioc-iranges (>= 2.38.1), r-bioc-biobase (>= 2.64.0), r-bioc-summarizedexperiment (>= 1.34.0), r-bioc-gseabase (>= 1.66.0), r-cran-matrix (>= 1.5-0), r-bioc-biocparallel (>= 1.38.0), r-bioc-singlecellexperiment (>= 1.26.0), r-bioc-sparsematrixstats (>= 1.16.0), r-bioc-delayedarray (>= 0.30.1), r-bioc-delayedmatrixstats (>= 1.26.0), r-bioc-hdf5array (>= 1.32.0), r-bioc-biocsingular (>= 1.20.0), r-bioc-spatialexperiment (>= 1.14.0) Package-List: r-bioc-gsva deb gnu-r optional arch=any Checksums-Sha1: 8f476f004d80c837376af7201dafe4accac8d91c 1324352 r-bioc-gsva_1.52.3+ds.orig.tar.xz 56a57f5f63b504c73b5a4b77a07acda5611dec22 4060 r-bioc-gsva_1.52.3+ds-1.debian.tar.xz Checksums-Sha256: 7b8b471a4e08e5c27fce05995c23a62de1c17fb1eb0505e3ccef5c3761f3c23a 1324352 r-bioc-gsva_1.52.3+ds.orig.tar.xz 9477767e11e470a8d136f8f20622a70ad0362490c961459c991104e818845dc3 4060 r-bioc-gsva_1.52.3+ds-1.debian.tar.xz Files: 70c1d1049ac4895809a50b1a31b85ab6 1324352 r-bioc-gsva_1.52.3+ds.orig.tar.xz 413a98b79cea175d000bae8f93cf36e2 4060 r-bioc-gsva_1.52.3+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmbByJAACgkQPCZ2P2xn 5uJ91g/9HvJ9iD/8ubiaE9GfGDTnCPmSreW4VA96yu9BCehqQGDE2YxR/oulq8M2 x7n6XO45BMtH/0UFOoAviFbmEive1nCz/b53o/Fl+vbOdeULQjam3Q7MPQLhBtzp WdP/MmICpa3pJRUGBShON0yVAOfBiaOdW6g44+vaqxnYj1qpKKQ3PlBUI/5XB52D 1JFt0Z+nIjojgduF6JC7W7Pc8Xt86kfGwPvfiBfNSvqEeMBAgBG2c3g0ox9fyCqe 5W6QMEg1oHE4MSjfj5KL27/X4WRHAyYkhvRAe/FisHfj6eqVwj6COrXlsjtmgtsb aTY6ETEGl66Pnf4LyuuyKg9pYEFfaM7GbYNuvawrnvZpJGS2Gh7GvVXMW4rvVf40 SO57r8ekXECQ6Wj9z8yuSs7wq4x7mpMMvx2AkThSoElxNrySQPx5i6SApzJqNZHI dUDhmVraclglJMnfROwjuX4c5OKD2z6+POSs4qIlnH1qSlOcljFQDwHeiL2kG/ME st68bW66kD0xG1TcWHirGWeoHcwXwlgnqEzNr9ENL763hnu5K+iksvW4Xs9/8dmD LiohYyzEI6eLz5Sn463WyTG3TI024WACdjKgJP/ezCjkbYwZBZ0ixCihOy7URvot VgdePipO198SAVhET89VaM2yYuy2x7O7riB36p8PB7Wezpo+SD8= =Kymx -----END PGP SIGNATURE----- Fri Nov 22 07:29:29 UTC 2024 I: Checking whether the package is not for us Fri Nov 22 07:29:29 UTC 2024 I: Starting 1st build on remote node infom08-i386.debian.net. Fri Nov 22 07:29:29 UTC 2024 I: Preparing to do remote build '1' on infom08-i386.debian.net. Fri Nov 22 07:29:29 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom08-i386.debian.net is marked as down. Fri Nov 22 07:29:29 UTC 2024 - checking via ssh if infom08-i386.debian.net is up. removed '/tmp/read-only-fs-test-oQxzeT' ==================================================================================== Thu Dec 25 13:52:30 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom08-i386, called using "1 r-bioc-gsva unstable /srv/reproducible-results/rbuild-debian/r-b-build.yGlafkT6 1.52.3+ds-1" as arguments. Thu Dec 25 13:52:30 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-fTzW5F4n" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Dec 25 13:52:30 UTC 2025 I: Downloading source for unstable/r-bioc-gsva=1.52.3+ds-1 Reading package lists... NOTICE: 'r-bioc-gsva' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-gsva.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-gsva.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1331 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main r-bioc-gsva 1.52.3+ds-1 (dsc) [2518 B] Get:2 http://deb.debian.org/debian unstable/main r-bioc-gsva 1.52.3+ds-1 (tar) [1324 kB] Get:3 http://deb.debian.org/debian unstable/main r-bioc-gsva 1.52.3+ds-1 (diff) [4060 B] Fetched 1331 kB in 0s (9651 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'r-bioc-gsva' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-gsva.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-gsva.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1331 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main r-bioc-gsva 1.52.3+ds-1 (dsc) [2518 B] Get:2 http://deb.debian.org/debian unstable/main r-bioc-gsva 1.52.3+ds-1 (tar) [1324 kB] Get:3 http://deb.debian.org/debian unstable/main r-bioc-gsva 1.52.3+ds-1 (diff) [4060 B] Fetched 1331 kB in 0s (9651 kB/s) Download complete and in download only mode ============================================================================= Building r-bioc-gsva in unstable on i386 on infom08-i386 now. Date: Thu Dec 25 13:52:30 UTC 2025 Date UTC: Thu Dec 25 13:52:30 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Dec 25 01:52:30 -12 2025 I: pbuilder-time-stamp: 1766670750 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [r-bioc-gsva_1.52.3+ds-1.dsc] I: copying [./r-bioc-gsva_1.52.3+ds.orig.tar.xz] I: copying [./r-bioc-gsva_1.52.3+ds-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Aug 18 10:10:24 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-gsva_1.52.3+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-gsva in r-bioc-gsva-1.52.3+ds dpkg-source: info: unpacking r-bioc-gsva_1.52.3+ds.orig.tar.xz dpkg-source: info: unpacking r-bioc-gsva_1.52.3+ds-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/30641/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='006ae2e108e349769d346aa98e942954' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='30641' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.yGlafkT6/pbuilderrc_9MOB --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.yGlafkT6/b1 --logfile b1/build.log r-bioc-gsva_1.52.3+ds-1.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom08-i386 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/30641/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), architecture-is-64-bit, dh-r, r-base-dev, r-bioc-s4vectors (>= 0.42.1), r-bioc-iranges (>= 2.38.1), r-bioc-biobase (>= 2.64.0), r-bioc-summarizedexperiment (>= 1.34.0), r-bioc-gseabase (>= 1.66.0), r-cran-matrix (>= 1.5-0), r-bioc-biocparallel (>= 1.38.0), r-bioc-singlecellexperiment (>= 1.26.0), r-bioc-sparsematrixstats (>= 1.16.0), r-bioc-delayedarray (>= 0.30.1), r-bioc-delayedmatrixstats (>= 1.26.0), r-bioc-hdf5array (>= 1.32.0), r-bioc-biocsingular (>= 1.20.0), r-bioc-spatialexperiment (>= 1.14.0) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19952 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors (>= 0.42.1); however: Package r-bioc-s4vectors is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-iranges (>= 2.38.1); however: Package r-bioc-iranges is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biobase (>= 2.64.0); however: Package r-bioc-biobase is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-summarizedexperiment (>= 1.34.0); however: Package r-bioc-summarizedexperiment is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-gseabase (>= 1.66.0); however: Package r-bioc-gseabase is not installed. pbuilder-satisfydepends-dummy depends on r-cran-matrix (>= 1.5-0); however: Package r-cran-matrix is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocparallel (>= 1.38.0); however: Package r-bioc-biocparallel is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-singlecellexperiment (>= 1.26.0); however: Package r-bioc-singlecellexperiment is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-sparsematrixstats (>= 1.16.0); however: Package r-bioc-sparsematrixstats is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-delayedarray (>= 0.30.1); however: Package r-bioc-delayedarray is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-delayedmatrixstats (>= 1.26.0); however: Package r-bioc-delayedmatrixstats is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-hdf5array (>= 1.32.0); however: Package r-bioc-hdf5array is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocsingular (>= 1.20.0); however: Package r-bioc-biocsingular is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-spatialexperiment (>= 1.14.0); however: Package r-bioc-spatialexperiment is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-s4vectors{a} r-cran-lattice{a} r-cran-matrix{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 190 newly installed, 0 to remove and 0 not upgraded. Need to get 115 MB of archives. After unpacking 338 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: architecture-is-64-bit which is a virtual package and is not provided by any available package Depends: r-bioc-iranges (>= 2.38.1) which is a virtual package and is not provided by any available package Depends: r-bioc-summarizedexperiment (>= 1.34.0) but it is not installable Depends: r-bioc-gseabase (>= 1.66.0) but it is not installable Depends: r-bioc-biocparallel (>= 1.38.0) which is a virtual package and is not provided by any available package Depends: r-bioc-singlecellexperiment (>= 1.26.0) but it is not installable Depends: r-bioc-sparsematrixstats (>= 1.16.0) which is a virtual package and is not provided by any available package Depends: r-bioc-delayedarray (>= 0.30.1) which is a virtual package and is not provided by any available package Depends: r-bioc-delayedmatrixstats (>= 1.26.0) but it is not installable Depends: r-bioc-hdf5array (>= 1.32.0) which is a virtual package and is not provided by any available package Depends: r-bioc-biocsingular (>= 1.20.0) which is a virtual package and is not provided by any available package Depends: r-bioc-spatialexperiment (>= 1.14.0) but it is not installable Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-s4vectors{a} r-cran-lattice{a} r-cran-matrix{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 190 newly installed, 0 to remove and 0 not upgraded. Need to get 115 MB of archives. After unpacking 338 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/30641 and its subdirectories Starting cleanup. All cleanup done. Thu Dec 25 13:52:42 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-fTzW5F4n, removing. /srv/reproducible-results/rbuild-debian/r-b-build.yGlafkT6: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 07:29 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 07:29 b2 -rw-r--r-- 1 jenkins jenkins 2518 Aug 18 10:20 r-bioc-gsva_1.52.3+ds-1.dsc -rw------- 1 jenkins jenkins 3666 Nov 22 07:29 rbuildlog.5CnXXFb /srv/reproducible-results/rbuild-debian/r-b-build.yGlafkT6/b1: total 20 -rw-r--r-- 1 jenkins jenkins 17530 Nov 22 07:29 build.log /srv/reproducible-results/rbuild-debian/r-b-build.yGlafkT6/b2: total 0 Fri Nov 22 07:29:43 UTC 2024 I: Deleting $TMPDIR on infom08-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Dec 25 01:52:30 -12 2025 I: pbuilder-time-stamp: 1766670750 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [r-bioc-gsva_1.52.3+ds-1.dsc] I: copying [./r-bioc-gsva_1.52.3+ds.orig.tar.xz] I: copying [./r-bioc-gsva_1.52.3+ds-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Aug 18 10:10:24 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-gsva_1.52.3+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-gsva in r-bioc-gsva-1.52.3+ds dpkg-source: info: unpacking r-bioc-gsva_1.52.3+ds.orig.tar.xz dpkg-source: info: unpacking r-bioc-gsva_1.52.3+ds-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/30641/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='006ae2e108e349769d346aa98e942954' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='30641' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.yGlafkT6/pbuilderrc_9MOB --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.yGlafkT6/b1 --logfile b1/build.log r-bioc-gsva_1.52.3+ds-1.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom08-i386 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/30641/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), architecture-is-64-bit, dh-r, r-base-dev, r-bioc-s4vectors (>= 0.42.1), r-bioc-iranges (>= 2.38.1), r-bioc-biobase (>= 2.64.0), r-bioc-summarizedexperiment (>= 1.34.0), r-bioc-gseabase (>= 1.66.0), r-cran-matrix (>= 1.5-0), r-bioc-biocparallel (>= 1.38.0), r-bioc-singlecellexperiment (>= 1.26.0), r-bioc-sparsematrixstats (>= 1.16.0), r-bioc-delayedarray (>= 0.30.1), r-bioc-delayedmatrixstats (>= 1.26.0), r-bioc-hdf5array (>= 1.32.0), r-bioc-biocsingular (>= 1.20.0), r-bioc-spatialexperiment (>= 1.14.0) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19952 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors (>= 0.42.1); however: Package r-bioc-s4vectors is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-iranges (>= 2.38.1); however: Package r-bioc-iranges is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biobase (>= 2.64.0); however: Package r-bioc-biobase is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-summarizedexperiment (>= 1.34.0); however: Package r-bioc-summarizedexperiment is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-gseabase (>= 1.66.0); however: Package r-bioc-gseabase is not installed. pbuilder-satisfydepends-dummy depends on r-cran-matrix (>= 1.5-0); however: Package r-cran-matrix is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocparallel (>= 1.38.0); however: Package r-bioc-biocparallel is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-singlecellexperiment (>= 1.26.0); however: Package r-bioc-singlecellexperiment is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-sparsematrixstats (>= 1.16.0); however: Package r-bioc-sparsematrixstats is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-delayedarray (>= 0.30.1); however: Package r-bioc-delayedarray is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-delayedmatrixstats (>= 1.26.0); however: Package r-bioc-delayedmatrixstats is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-hdf5array (>= 1.32.0); however: Package r-bioc-hdf5array is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocsingular (>= 1.20.0); however: Package r-bioc-biocsingular is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-spatialexperiment (>= 1.14.0); however: Package r-bioc-spatialexperiment is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-s4vectors{a} r-cran-lattice{a} r-cran-matrix{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 190 newly installed, 0 to remove and 0 not upgraded. Need to get 115 MB of archives. After unpacking 338 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: architecture-is-64-bit which is a virtual package and is not provided by any available package Depends: r-bioc-iranges (>= 2.38.1) which is a virtual package and is not provided by any available package Depends: r-bioc-summarizedexperiment (>= 1.34.0) but it is not installable Depends: r-bioc-gseabase (>= 1.66.0) but it is not installable Depends: r-bioc-biocparallel (>= 1.38.0) which is a virtual package and is not provided by any available package Depends: r-bioc-singlecellexperiment (>= 1.26.0) but it is not installable Depends: r-bioc-sparsematrixstats (>= 1.16.0) which is a virtual package and is not provided by any available package Depends: r-bioc-delayedarray (>= 0.30.1) which is a virtual package and is not provided by any available package Depends: r-bioc-delayedmatrixstats (>= 1.26.0) but it is not installable Depends: r-bioc-hdf5array (>= 1.32.0) which is a virtual package and is not provided by any available package Depends: r-bioc-biocsingular (>= 1.20.0) which is a virtual package and is not provided by any available package Depends: r-bioc-spatialexperiment (>= 1.14.0) but it is not installable Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-s4vectors{a} r-cran-lattice{a} r-cran-matrix{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 190 newly installed, 0 to remove and 0 not upgraded. Need to get 115 MB of archives. After unpacking 338 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/30641 and its subdirectories r-bioc-gsva failed to build from source. removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/r-bioc-gsva_1.52.3+ds-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/r-bioc-gsva_1.52.3+ds-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/r-bioc-gsva_1.52.3+ds-1.build1.log.gz' Fri Nov 22 07:29:44 UTC 2024 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 76.1% -- replaced with stdout Fri Nov 22 07:29:44 UTC 2024 W: Downloading the build dependencies failed Fri Nov 22 07:29:44 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Fri Nov 22 07:29:44 UTC 2024 W: Network problems are automatically rescheduled after some hours. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-22 07:29:45] INFO: Starting at 2024-11-22 07:29:45.238995 [2024-11-22 07:29:45] INFO: Generating the pages of 1 package(s) [2024-11-22 07:29:45] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/r-bioc-gsva_1.52.3+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/r-bioc-gsva_1.52.3+ds-1.diff.gz is missing [2024-11-22 07:29:45] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/i386/r-bioc-gsva didn't produce a buildlog, even though it has been built. [2024-11-22 07:29:45] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/r-bioc-gsva_1.52.3+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/r-bioc-gsva_1.52.3+ds-1.diff.gz is missing [2024-11-22 07:29:45] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/r-bioc-gsva_1.52.3+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/r-bioc-gsva_1.52.3+ds-1.diff.gz is missing [2024-11-22 07:29:45] INFO: Finished at 2024-11-22 07:29:45.569638, took: 0:00:00.330652 Fri Nov 22 07:29:45 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/i386/r-bioc-gsva.html Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/r-bioc-gsva_1.52.3+ds-1.rbuild.log: 72.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/i386/r-bioc-gsva_1.52.3+ds-1.rbuild.log.gz [2024-11-22 07:29:45] INFO: Starting at 2024-11-22 07:29:45.991758 [2024-11-22 07:29:46] INFO: Generating the pages of 1 package(s) [2024-11-22 07:29:46] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/r-bioc-gsva_1.52.3+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/r-bioc-gsva_1.52.3+ds-1.diff.gz is missing [2024-11-22 07:29:46] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/r-bioc-gsva_1.52.3+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/r-bioc-gsva_1.52.3+ds-1.diff.gz is missing [2024-11-22 07:29:46] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/r-bioc-gsva_1.52.3+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/r-bioc-gsva_1.52.3+ds-1.diff.gz is missing [2024-11-22 07:29:46] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/r-bioc-gsva_1.52.3+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/r-bioc-gsva_1.52.3+ds-1.diff.gz is missing [2024-11-22 07:29:46] INFO: Finished at 2024-11-22 07:29:46.412656, took: 0:00:00.420907 All cleanup done. Fri Nov 22 07:29:46 UTC 2024 - total duration: 0h 0m 36s. Fri Nov 22 07:29:46 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-bgedyQcG, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 37.845s CPU time consumed: 4.989s