Running as unit: rb-build-i386_16-49009.service ==================================================================================== Fri Nov 22 14:27:15 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_i386_16) on jenkins, called using "infom08-i386 infom07-i386" as arguments. Fri Nov 22 14:27:15 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-rmnjlAY5" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Nov 22 14:27:15 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom08-i386.debian.net is marked as down. Fri Nov 22 14:27:15 UTC 2024 - checking via ssh if infom08-i386.debian.net is up. removed '/tmp/read-only-fs-test-kjfZsQ' Fri Nov 22 14:27:16 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom07-i386.debian.net is marked as down. Fri Nov 22 14:27:16 UTC 2024 - checking via ssh if infom07-i386.debian.net is up. removed '/tmp/read-only-fs-test-LU41M3' ok, let's check if r-bioc-genomeinfodb is building anywhere yet… ok, r-bioc-genomeinfodb is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of r-bioc-genomeinfodb in trixie on i386 on jenkins now. 1st build will be done on infom08-i386.debian.net. 2nd build will be done on infom07-i386.debian.net. ============================================================================= Fri Nov 22 14:27:35 UTC 2024 I: starting to build r-bioc-genomeinfodb/trixie/i386 on jenkins on '2024-11-22 14:27' Fri Nov 22 14:27:35 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_16/49009/console.log 1732285655 i386 trixie r-bioc-genomeinfodb Fri Nov 22 14:27:35 UTC 2024 I: Downloading source for trixie/r-bioc-genomeinfodb=1.40.1+dfsg-1 --2024-11-22 14:27:36-- http://deb.debian.org/debian/pool/main/r/r-bioc-genomeinfodb/r-bioc-genomeinfodb_1.40.1%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2332 (2.3K) [text/prs.lines.tag] Saving to: ‘r-bioc-genomeinfodb_1.40.1+dfsg-1.dsc’ 0K .. 100% 295M=0s 2024-11-22 14:27:36 (295 MB/s) - ‘r-bioc-genomeinfodb_1.40.1+dfsg-1.dsc’ saved [2332/2332] --2024-11-22 14:27:36-- http://deb.debian.org/debian/pool/main/r/r-bioc-genomeinfodb/r-bioc-genomeinfodb_1.40.1%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2332 (2.3K) [text/prs.lines.tag] Saving to: ‘r-bioc-genomeinfodb_1.40.1+dfsg-1.dsc’ 0K .. 100% 295M=0s 2024-11-22 14:27:36 (295 MB/s) - ‘r-bioc-genomeinfodb_1.40.1+dfsg-1.dsc’ saved [2332/2332] Fri Nov 22 14:27:36 UTC 2024 I: r-bioc-genomeinfodb_1.40.1+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-genomeinfodb Binary: r-bioc-genomeinfodb Architecture: all Version: 1.40.1+dfsg-1 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille , Charles Plessy Homepage: https://bioconductor.org/packages/GenomeInfoDb/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-genomeinfodb Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-genomeinfodb.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.50.0), r-bioc-s4vectors (>= 0.42.1), r-bioc-iranges (>= 2.38.1), r-bioc-ucsc.utils (>> 1.0.0+ds-1), r-bioc-genomeinfodbdata (>= 1.2.12) Package-List: r-bioc-genomeinfodb deb gnu-r optional arch=all Checksums-Sha1: 47afe0a4b2c3b569c58a22cee65c27433f11a6f9 3261372 r-bioc-genomeinfodb_1.40.1+dfsg.orig.tar.xz 0cd2860a62087660a706a290e693754bc8f05938 5968 r-bioc-genomeinfodb_1.40.1+dfsg-1.debian.tar.xz Checksums-Sha256: 708443334025215f3f92f0499290277076591742cae37fe0b46d27b32928e55e 3261372 r-bioc-genomeinfodb_1.40.1+dfsg.orig.tar.xz a120f19581952bb1d357ad51d3bc279bf72699e84cf249cf498c146e9cbf124a 5968 r-bioc-genomeinfodb_1.40.1+dfsg-1.debian.tar.xz Files: 0c01ade0e75f3f6eac10da1dc85a0fde 3261372 r-bioc-genomeinfodb_1.40.1+dfsg.orig.tar.xz df48604bb0ad72c5e71c3180d517702e 5968 r-bioc-genomeinfodb_1.40.1+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAma/0XsACgkQPCZ2P2xn 5uJFZhAArITG0GOzKoTAzdhjcBkCjWJBPJ6oKgliqUOQ05KTT8iOxs2XLLv9yZkZ uG2QiW6FVqNvhqZEpbQHpXuW3IZ+vbrV0N03r+rsaDUqTyjRxqLd4lsuFO/r0zPP Wr+zMsVic+ejVRODSpt/IS19yvVwFa9PyOQ5nX9a+FKi+cOnWL3xW3WJWmAvbHx7 iK8APDNL2IwrHnTIusDEBawabW5wTskVjQDi0WUqh4IOGh8C7UbVhfFrjDb8X6Q8 TRbOxXXklYaNKfOaJtSYBWy9BKGq5ibdqk0N2oYSELsKrjhZji8uM5aW33InCTRm xE0cNBNLb0cIk5Xh7F2bCsctxdJH8kZP6LGwOni5queVVVf4egkLET4drI/la9jP yNnDMst2rYpnEBnF8QG/MPQV/MFAcgyxqQfXEvgS+hZbBXPH27qZsucocTFvF8mt i1aCnlAuJ7kYqijTzu6VOXb0Frz4h9g/qvjRuEoFa4uZ2shp1MsJODE39dnwyl1J 8sY51ticJ2A3X6tGUSt4qnOBHkFl8kkOqT6Bi7nY/+h6vPffMHHx5YTxhZ9MLRpF q6ON+Oa1xFIApCZs7fZgAqG0tv/59x4JMq0Y08EMoJRM/+XF8krNHdr0UuEqGmR/ LpgsrSWneB8dwm3hCUu7po1B1F2qIy3Lcth4hp3DvR57TQ9c+2o= =Z9yU -----END PGP SIGNATURE----- Fri Nov 22 14:27:36 UTC 2024 I: Checking whether the package is not for us Fri Nov 22 14:27:36 UTC 2024 I: Starting 1st build on remote node infom08-i386.debian.net. Fri Nov 22 14:27:36 UTC 2024 I: Preparing to do remote build '1' on infom08-i386.debian.net. Fri Nov 22 14:27:36 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom08-i386.debian.net is marked as down. Fri Nov 22 14:27:36 UTC 2024 - checking via ssh if infom08-i386.debian.net is up. removed '/tmp/read-only-fs-test-k5MLMu' ==================================================================================== Thu Dec 25 20:50:37 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom08-i386, called using "1 r-bioc-genomeinfodb trixie /srv/reproducible-results/rbuild-debian/r-b-build.vLMJlPuT 1.40.1+dfsg-1" as arguments. Thu Dec 25 20:50:37 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-kYx1nDqb" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Dec 25 20:50:37 UTC 2025 I: Downloading source for trixie/r-bioc-genomeinfodb=1.40.1+dfsg-1 Reading package lists... NOTICE: 'r-bioc-genomeinfodb' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-genomeinfodb.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-genomeinfodb.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3270 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main r-bioc-genomeinfodb 1.40.1+dfsg-1 (dsc) [2332 B] Get:2 http://deb.debian.org/debian trixie/main r-bioc-genomeinfodb 1.40.1+dfsg-1 (tar) [3261 kB] Get:3 http://deb.debian.org/debian trixie/main r-bioc-genomeinfodb 1.40.1+dfsg-1 (diff) [5968 B] Fetched 3270 kB in 0s (34.0 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'r-bioc-genomeinfodb' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-genomeinfodb.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-genomeinfodb.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3270 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main r-bioc-genomeinfodb 1.40.1+dfsg-1 (dsc) [2332 B] Get:2 http://deb.debian.org/debian trixie/main r-bioc-genomeinfodb 1.40.1+dfsg-1 (tar) [3261 kB] Get:3 http://deb.debian.org/debian trixie/main r-bioc-genomeinfodb 1.40.1+dfsg-1 (diff) [5968 B] Fetched 3270 kB in 0s (34.0 MB/s) Download complete and in download only mode ============================================================================= Building r-bioc-genomeinfodb in trixie on i386 on infom08-i386 now. Date: Thu Dec 25 20:50:37 UTC 2025 Date UTC: Thu Dec 25 20:50:37 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Dec 25 08:50:37 -12 2025 I: pbuilder-time-stamp: 1766695837 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [r-bioc-genomeinfodb_1.40.1+dfsg-1.dsc] I: copying [./r-bioc-genomeinfodb_1.40.1+dfsg.orig.tar.xz] I: copying [./r-bioc-genomeinfodb_1.40.1+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Aug 16 22:23:55 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-genomeinfodb_1.40.1+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-genomeinfodb in r-bioc-genomeinfodb-1.40.1+dfsg dpkg-source: info: unpacking r-bioc-genomeinfodb_1.40.1+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-genomeinfodb_1.40.1+dfsg-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/19041/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='0db1dac065c040cfb8d55d1cbfa38ee8' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='19041' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.vLMJlPuT/pbuilderrc_VOsf --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.vLMJlPuT/b1 --logfile b1/build.log r-bioc-genomeinfodb_1.40.1+dfsg-1.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom08-i386 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/19041/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.50.0), r-bioc-s4vectors (>= 0.42.1), r-bioc-iranges (>= 2.38.1), r-bioc-ucsc.utils (>> 1.0.0+ds-1), r-bioc-genomeinfodbdata (>= 1.2.12) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics (>= 0.50.0); however: Package r-bioc-biocgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors (>= 0.42.1); however: Package r-bioc-s4vectors is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-iranges (>= 2.38.1); however: Package r-bioc-iranges is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-ucsc.utils (>> 1.0.0+ds-1); however: Package r-bioc-ucsc.utils is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomeinfodbdata (>= 1.2.12); however: Package r-bioc-genomeinfodbdata is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biocgenerics{a} r-bioc-genomeinfodbdata{a} r-bioc-s4vectors{a} r-bioc-ucsc.utils{a} r-cran-askpass{a} r-cran-curl{a} r-cran-httr{a} r-cran-jsonlite{a} r-cran-mime{a} r-cran-openssl{a} r-cran-r6{a} r-cran-sys{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-cran-covr r-cran-digest r-cran-httpuv r-cran-jpeg r-cran-knitr r-cran-later r-cran-png r-cran-r.rsp r-cran-readr r-cran-rmarkdown r-cran-sodium r-cran-spelling r-cran-testthat r-cran-vctrs r-cran-webutils r-cran-xml2 r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 197 newly installed, 0 to remove and 0 not upgraded. Need to get 121 MB of archives. After unpacking 340 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: r-bioc-iranges (>= 2.38.1) which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biocgenerics{a} r-bioc-genomeinfodbdata{a} r-bioc-s4vectors{a} r-bioc-ucsc.utils{a} r-cran-askpass{a} r-cran-curl{a} r-cran-httr{a} r-cran-jsonlite{a} r-cran-mime{a} r-cran-openssl{a} r-cran-r6{a} r-cran-sys{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-cran-covr r-cran-digest r-cran-httpuv r-cran-jpeg r-cran-knitr r-cran-later r-cran-png r-cran-r.rsp r-cran-readr r-cran-rmarkdown r-cran-sodium r-cran-spelling r-cran-testthat r-cran-vctrs r-cran-webutils r-cran-xml2 r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 197 newly installed, 0 to remove and 0 not upgraded. Need to get 121 MB of archives. After unpacking 340 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/19041 and its subdirectories Starting cleanup. All cleanup done. Thu Dec 25 20:50:49 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-kYx1nDqb, removing. /srv/reproducible-results/rbuild-debian/r-b-build.vLMJlPuT: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 14:27 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 14:27 b2 -rw-r--r-- 1 jenkins jenkins 2332 Aug 16 22:28 r-bioc-genomeinfodb_1.40.1+dfsg-1.dsc -rw------- 1 jenkins jenkins 3542 Nov 22 14:27 rbuildlog.udmk2Qi /srv/reproducible-results/rbuild-debian/r-b-build.vLMJlPuT/b1: total 16 -rw-r--r-- 1 jenkins jenkins 15233 Nov 22 14:27 build.log /srv/reproducible-results/rbuild-debian/r-b-build.vLMJlPuT/b2: total 0 Fri Nov 22 14:27:50 UTC 2024 I: Deleting $TMPDIR on infom08-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Dec 25 08:50:37 -12 2025 I: pbuilder-time-stamp: 1766695837 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [r-bioc-genomeinfodb_1.40.1+dfsg-1.dsc] I: copying [./r-bioc-genomeinfodb_1.40.1+dfsg.orig.tar.xz] I: copying [./r-bioc-genomeinfodb_1.40.1+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Aug 16 22:23:55 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-genomeinfodb_1.40.1+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-genomeinfodb in r-bioc-genomeinfodb-1.40.1+dfsg dpkg-source: info: unpacking r-bioc-genomeinfodb_1.40.1+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-genomeinfodb_1.40.1+dfsg-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/19041/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='0db1dac065c040cfb8d55d1cbfa38ee8' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='19041' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.vLMJlPuT/pbuilderrc_VOsf --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.vLMJlPuT/b1 --logfile b1/build.log r-bioc-genomeinfodb_1.40.1+dfsg-1.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom08-i386 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/19041/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.50.0), r-bioc-s4vectors (>= 0.42.1), r-bioc-iranges (>= 2.38.1), r-bioc-ucsc.utils (>> 1.0.0+ds-1), r-bioc-genomeinfodbdata (>= 1.2.12) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics (>= 0.50.0); however: Package r-bioc-biocgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors (>= 0.42.1); however: Package r-bioc-s4vectors is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-iranges (>= 2.38.1); however: Package r-bioc-iranges is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-ucsc.utils (>> 1.0.0+ds-1); however: Package r-bioc-ucsc.utils is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomeinfodbdata (>= 1.2.12); however: Package r-bioc-genomeinfodbdata is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biocgenerics{a} r-bioc-genomeinfodbdata{a} r-bioc-s4vectors{a} r-bioc-ucsc.utils{a} r-cran-askpass{a} r-cran-curl{a} r-cran-httr{a} r-cran-jsonlite{a} r-cran-mime{a} r-cran-openssl{a} r-cran-r6{a} r-cran-sys{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-cran-covr r-cran-digest r-cran-httpuv r-cran-jpeg r-cran-knitr r-cran-later r-cran-png r-cran-r.rsp r-cran-readr r-cran-rmarkdown r-cran-sodium r-cran-spelling r-cran-testthat r-cran-vctrs r-cran-webutils r-cran-xml2 r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 197 newly installed, 0 to remove and 0 not upgraded. Need to get 121 MB of archives. After unpacking 340 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: r-bioc-iranges (>= 2.38.1) which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biocgenerics{a} r-bioc-genomeinfodbdata{a} r-bioc-s4vectors{a} r-bioc-ucsc.utils{a} r-cran-askpass{a} r-cran-curl{a} r-cran-httr{a} r-cran-jsonlite{a} r-cran-mime{a} r-cran-openssl{a} r-cran-r6{a} r-cran-sys{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-cran-covr r-cran-digest r-cran-httpuv r-cran-jpeg r-cran-knitr r-cran-later r-cran-png r-cran-r.rsp r-cran-readr r-cran-rmarkdown r-cran-sodium r-cran-spelling r-cran-testthat r-cran-vctrs r-cran-webutils r-cran-xml2 r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 197 newly installed, 0 to remove and 0 not upgraded. Need to get 121 MB of archives. After unpacking 340 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/19041 and its subdirectories r-bioc-genomeinfodb failed to build from source. removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/r-bioc-genomeinfodb_1.40.1+dfsg-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/r-bioc-genomeinfodb_1.40.1+dfsg-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/r-bioc-genomeinfodb_1.40.1+dfsg-1.build1.log.gz' Fri Nov 22 14:27:51 UTC 2024 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 73.7% -- replaced with stdout Fri Nov 22 14:27:51 UTC 2024 W: Downloading the build dependencies failed Fri Nov 22 14:27:51 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Fri Nov 22 14:27:51 UTC 2024 W: Network problems are automatically rescheduled after some hours. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-22 14:27:51] INFO: Starting at 2024-11-22 14:27:51.790692 [2024-11-22 14:27:51] INFO: Generating the pages of 1 package(s) [2024-11-22 14:27:52] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/r-bioc-genomeinfodb_1.40.1+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/r-bioc-genomeinfodb_1.40.1+dfsg-1.diff.gz is missing [2024-11-22 14:27:52] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/r-bioc-genomeinfodb_1.40.1+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/r-bioc-genomeinfodb_1.40.1+dfsg-1.diff.gz is missing [2024-11-22 14:27:52] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/r-bioc-genomeinfodb_1.40.1+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/r-bioc-genomeinfodb_1.40.1+dfsg-1.diff.gz is missing [2024-11-22 14:27:52] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/i386/r-bioc-genomeinfodb didn't produce a buildlog, even though it has been built. [2024-11-22 14:27:52] INFO: Finished at 2024-11-22 14:27:52.645666, took: 0:00:00.854983 Fri Nov 22 14:27:52 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/i386/r-bioc-genomeinfodb.html Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/r-bioc-genomeinfodb_1.40.1+dfsg-1.rbuild.log: 69.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/i386/r-bioc-genomeinfodb_1.40.1+dfsg-1.rbuild.log.gz [2024-11-22 14:27:53] INFO: Starting at 2024-11-22 14:27:53.053314 [2024-11-22 14:27:53] INFO: Generating the pages of 1 package(s) [2024-11-22 14:27:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/r-bioc-genomeinfodb_1.40.1+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/r-bioc-genomeinfodb_1.40.1+dfsg-1.diff.gz is missing [2024-11-22 14:27:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/r-bioc-genomeinfodb_1.40.1+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/r-bioc-genomeinfodb_1.40.1+dfsg-1.diff.gz is missing [2024-11-22 14:27:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/r-bioc-genomeinfodb_1.40.1+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/r-bioc-genomeinfodb_1.40.1+dfsg-1.diff.gz is missing [2024-11-22 14:27:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/r-bioc-genomeinfodb_1.40.1+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/r-bioc-genomeinfodb_1.40.1+dfsg-1.diff.gz is missing [2024-11-22 14:27:53] INFO: Finished at 2024-11-22 14:27:53.636043, took: 0:00:00.582738 All cleanup done. Fri Nov 22 14:27:53 UTC 2024 - total duration: 0h 0m 36s. Fri Nov 22 14:27:53 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-rmnjlAY5, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 38.237s CPU time consumed: 5.399s